Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 235 of 427
Found at i:66640715 original size:20 final size:18
Alignment explanation
Indices: 66640687--66640728 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
66640677 ATAATTAATT
66640687 AAATAATTAAAAATATATTA
1 AAATAATTAAAAAT-T-TTA
*
66640707 AAATCATTAAAAATTTTA
1 AAATAATTAAAAATTTTA
66640725 AAAT
1 AAAT
66640729 TATAAAACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
20 13 0.62
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATAATTAAAAATTTTA
Found at i:66646046 original size:24 final size:24
Alignment explanation
Indices: 66646014--66646098 Score: 118
Period size: 24 Copynumber: 3.5 Consensus size: 24
66646004 ACCAAACGTT
* **
66646014 GCACACATAGTGCT-TATTATGTTC
1 GCACACATAGTGCTATAGTA-AATC
66646038 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCTATAGTAAATC
*
66646062 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTATAGTAAATC
66646086 GCACACATAGTGC
1 GCACACATAGTGC
66646099 ATTTGAGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
24 52 0.93
25 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (24 bp):
GCACACATAGTGCTATAGTAAATC
Found at i:66653866 original size:24 final size:23
Alignment explanation
Indices: 66653834--66653942 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
66653824 ACCAAACGTT
* **
66653834 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
66653858 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
66653882 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
66653906 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
66653930 GCACACATAGTGC
1 GCACACATAGTGC
66653943 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:66653908 original size:48 final size:48
Alignment explanation
Indices: 66653834--66653942 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
66653824 ACCAAACGTT
* **
66653834 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
66653882 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
66653930 GCACACATAGTGC
1 GCACACATAGTGC
66653943 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:66656150 original size:34 final size:34
Alignment explanation
Indices: 66656107--66656175 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
66656097 GGCTCGAGAG
66656107 TATGCTCCCTGAATAAGAATTGACGATTTATCCA
1 TATGCTCCCTGAATAAGAATTGACGATTTATCCA
*
66656141 TATGCTCCCTGAATAAGAATTGACGGTTTATCCA
1 TATGCTCCCTGAATAAGAATTGACGATTTATCCA
66656175 T
1 T
66656176 CGACATTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (34 bp):
TATGCTCCCTGAATAAGAATTGACGATTTATCCA
Found at i:66660298 original size:48 final size:48
Alignment explanation
Indices: 66660227--66660460 Score: 265
Period size: 48 Copynumber: 4.9 Consensus size: 48
66660217 AGGGTAAGAT
* **
66660227 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA-AGTCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA-TAAAG
* * *
66660275 GCCGATGCCATGTCCCAAACATGGTCTTACGCTAGCTCTCATATAAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * * **
66660323 GCCAATGCCATGTTCCAAATATGGTCTTACACTAGTTCACATATCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * *
66660371 GCCAATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCATATAAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAG
* * * *
66660418 GCCGATGCCATGTTCCAAACATGGTCTTAAATTGGCTCACATA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
66660461 ACCTTAGTAT
Statistics
Matches: 154, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
47 39 0.25
48 114 0.74
49 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAG
Found at i:66660458 original size:95 final size:97
Alignment explanation
Indices: 66660225--66660460 Score: 352
Period size: 96 Copynumber: 2.5 Consensus size: 97
66660215 AAAGGGTAAG
* * *
66660225 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA-AGTCGAGGCCGATGCCATGTC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAGTCGAGGCCAATGCCATGTC
*
66660289 CCAAACATGGTCTTACGCTAGCTCTCATATAA
66 CCAAACATGGTCTTACACTAGCTCTCATATAA
* * *
66660321 ATGCCAATGCCATGTTCCAAATATGGTCTTACACTAGTTCACATA-TCGAGGCCAATGCCATGTC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAGTCGAGGCCAATGCCATGTC
*
66660385 CCAGACAT-GTCTTACACTAGCTCTCATATAA
66 CCAAACATGGTCTTACACTAGCTCTCATATAA
* * *
66660416 ATGCCGATGCCATGTTCCAAACATGGTCTTAAATTGGCTCACATA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
66660461 ACCTTAGTAT
Statistics
Matches: 125, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
95 61 0.49
96 63 0.50
97 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (97 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAGTCGAGGCCAATGCCATGTC
CCAAACATGGTCTTACACTAGCTCTCATATAA
Found at i:66672622 original size:29 final size:28
Alignment explanation
Indices: 66672589--66672644 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
66672579 CTAGAGATAC
66672589 TGATTTGGCTTCGAGCCATGCATATCAGT
1 TGATTTGGCTTCGAGCCATG-ATATCAGT
* *
66672618 TGATTTGGCTTCGGGCTATGATATCAG
1 TGATTTGGCTTCGAGCCATGATATCAG
66672645 AATTTTGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.36
Consensus pattern (28 bp):
TGATTTGGCTTCGAGCCATGATATCAGT
Found at i:66675043 original size:13 final size:13
Alignment explanation
Indices: 66674989--66675044 Score: 60
Period size: 13 Copynumber: 4.3 Consensus size: 13
66674979 GGACACACCC
* *
66674989 GTGTCCTATGCCC
1 GTGTCCCATGCCT
*
66675002 ATGTCCCATGCCT
1 GTGTCCCATGCCT
*
66675015 GTATCCCACT-CCT
1 GTGTCCCA-TGCCT
66675028 GTGTCCCATGCCT
1 GTGTCCCATGCCT
66675041 GTGT
1 GTGT
66675045 GAATTAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
12 1 0.03
13 33 0.94
14 1 0.03
ACGTcount: A:0.11, C:0.38, G:0.20, T:0.32
Consensus pattern (13 bp):
GTGTCCCATGCCT
Found at i:66678631 original size:6 final size:6
Alignment explanation
Indices: 66678620--66678717 Score: 67
Period size: 6 Copynumber: 15.8 Consensus size: 6
66678610 AACCAAAATG
* *
66678620 AGAATC AGAATC AGAATT AG-GTGAC AGAGAATC AGAATC AGTAA-C AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGA-A-TC AGAATC AG-AATC AGAATC
* * * *
66678671 AGAATC AGAATC AGTATT AGTAA-C AGAATT AGGATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT
66678718 TACGTGACAG
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
5 5 0.07
6 55 0.77
7 6 0.08
8 4 0.06
10 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:66678683 original size:30 final size:30
Alignment explanation
Indices: 66678647--66678742 Score: 129
Period size: 30 Copynumber: 3.2 Consensus size: 30
66678637 TAGGTGACAG
*
66678647 AGAATCAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATTAGTAACAGAATCAGAATC
* * *
66678677 AGAATCAGTATTAGTAACAGAATTAGGATC
1 AGAATCAGAATTAGTAACAGAATCAGAATC
* *
66678707 AGAATCAGAATTACGTGACAGAATCAGAACC
1 AGAATCAGAATTA-GTAACAGAATCAGAATC
66678738 AGAAT
1 AGAAT
66678743 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
30 38 0.68
31 18 0.32
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATTAGTAACAGAATCAGAATC
Found at i:66678697 original size:24 final size:24
Alignment explanation
Indices: 66678620--66678708 Score: 81
Period size: 24 Copynumber: 3.6 Consensus size: 24
66678610 AACCAAAATG
* *
66678620 AGAATCAGAATCAGAATTAGGTGACAG
1 AGAATCAGAATCAGTATTA-GT-A-AC
**
66678647 AGAATCAGAATCAGTAACAG-AATC
1 AGAATCAGAATCAGTATTAGTAA-C
66678671 AGAATCAGAATCAGTATTAGTAAC
1 AGAATCAGAATCAGTATTAGTAAC
* *
66678695 AGAATTAGGATCAG
1 AGAATCAGAATCAG
66678709 AATCAGAATT
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.02
24 32 0.62
25 2 0.04
26 1 0.02
27 16 0.31
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGTATTAGTAAC
Found at i:66678730 original size:19 final size:18
Alignment explanation
Indices: 66678650--66678735 Score: 70
Period size: 18 Copynumber: 4.7 Consensus size: 18
66678640 GTGACAGAGA
* *
66678650 ATCAGAATCAGTAA-CAGA
1 ATCAGAATCAG-AATTAGG
* *
66678668 ATCAGAATCAGAATCAGT
1 ATCAGAATCAGAATTAGG
*
66678686 ATTAGTAA-CAGAATTAGG
1 ATCAG-AATCAGAATTAGG
66678704 ATCAGAATCAGAATTACGTG
1 ATCAGAATCAGAATTA-G-G
66678724 A-CAGAATCAGAA
1 ATCAGAATCAGAA
66678736 CCAGAATGTG
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
17 4 0.07
18 38 0.66
19 14 0.24
20 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (18 bp):
ATCAGAATCAGAATTAGG
Found at i:66678735 original size:6 final size:6
Alignment explanation
Indices: 66678647--66678717 Score: 74
Period size: 6 Copynumber: 11.8 Consensus size: 6
66678637 TAGGTGACAG
* *
66678647 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
* *
66678695 AGAATT AGGATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT
66678718 TACGTGACAG
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
5 4 0.08
6 46 0.87
7 3 0.06
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:66678916 original size:27 final size:26
Alignment explanation
Indices: 66678874--66678975 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
66678864 GCTCAGTTAT
* *
66678874 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
66678901 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
66678927 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
66678955 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
66678976 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:66679161 original size:22 final size:22
Alignment explanation
Indices: 66679133--66679197 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
66679123 GCAAATACGT
*
66679133 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
66679155 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
66679177 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
66679198 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:66679663 original size:27 final size:27
Alignment explanation
Indices: 66679606--66680151 Score: 763
Period size: 27 Copynumber: 20.3 Consensus size: 27
66679596 AGGGCAAAAT
* * *
66679606 GGTAATTTTACCCCACA-AGGTATCTT-
1 GGTAATTCTACCCTACAGGGGTAT-TTC
* *
66679632 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
66679659 AGTAATTCTACCTTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66679686 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66679713 GGTAATTCTACCCTACAGGGGTACTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66679740 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66679767 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66679794 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66679821 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66679848 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66679875 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
66679902 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
66679929 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
66679956 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66679983 GGTGATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
66680010 GGTTATTCTACCATACAAGGGTAATTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
66680037 GATAATTCTAACCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66680064 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
66680091 GGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
66680118 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
66680145 GGTAATT
1 GGTAATT
66680152 TTGTAAACCA
Statistics
Matches: 469, Mismatches: 49, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
26 16 0.03
27 453 0.97
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:66680337 original size:26 final size:26
Alignment explanation
Indices: 66680081--66680340 Score: 136
Period size: 27 Copynumber: 9.7 Consensus size: 26
66680071 CTACCCTATA
* *
66680081 AGGGTATTTCGGTAATTTTAC-CCTAT
1 AGGGTATTTCGGTAATTTTACAACT-G
* * *
66680107 AGGGGTATTTCGGTAATTCTAC-CCTAC
1 A-GGGTATTTCGGTAATTTTACAACT-G
**
66680134 AGGGGTATTTCGGTAATTTTGTA-AACCA
1 A-GGGTATTTCGGTAA-TTT-TACAACTG
* * *
66680162 AGGGCATTTTGGTAATTTTACAAAC-C
1 AGGGTATTTCGGTAATTTTAC-AACTG
* **
66680188 AGGGGTATTTTGGTAATTTTATTGA-TCG
1 A-GGGTATTTCGGTAATTTTA-CAACT-G
** *
66680216 AGGGTATTTTAGTAATTTTGCAAACTG
1 AGGGTATTTCGGTAATTTTAC-AACTG
*
66680243 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAACT-G
* * * *
66680270 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTA-CAACTG
*
66680297 GGGGTACTTT-GGTAATTTTACAACTG
1 AGGGTA-TTTCGGTAATTTTACAACTG
* *
66680323 GGGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
66680341 CATAATCGAG
Statistics
Matches: 187, Mismatches: 31, Indels: 32
0.75 0.12 0.13
Matches are distributed among these distances:
25 5 0.03
26 25 0.13
27 144 0.77
28 10 0.05
29 3 0.02
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAACTG
Found at i:66680381 original size:27 final size:27
Alignment explanation
Indices: 66680344--66680516 Score: 240
Period size: 27 Copynumber: 6.4 Consensus size: 27
66680334 GTAATTTCAT
66680344 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
66680371 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
** *
66680398 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
66680425 AATCGAGGGTAAAATGTTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
66680452 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
66680479 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
66680506 AATCGAGGGTA
1 AATCGAGGGTA
66680517 CTTTGGTAAT
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.01
27 127 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:66680524 original size:27 final size:27
Alignment explanation
Indices: 66680136--66680540 Score: 227
Period size: 27 Copynumber: 15.1 Consensus size: 27
66680126 TACCCTACAG
* * *
66680136 GGGT-ATTTCGGTAATTTTGTAAACCAA
1 GGGTAATTT-GGTAATTTTATAAATCGA
* * * *
66680163 GGGCATTTTGGTAATTTTACAAA-CCA
1 GGGTAATTTGGTAATTTTATAAATCGA
* **
66680189 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTAATTTGGTAATTTTATAAATCGA
* * **
66680217 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTAATTTGGTAATTTTATAAATC-GA
*
66680244 GGGT-ATTTCGGTAATTTTACAAATCGA
1 GGGTAATTT-GGTAATTTTATAAATCGA
* * *
66680271 GGAT-ATTTGGGTAATTTTATAAACCGG
1 GGGTAATTT-GGTAATTTTATAAATCGA
* * * *
66680298 GGGTACTTTGGTAATTTTACAACT-GG
1 GGGTAATTTGGTAATTTTATAAATCGA
* *
66680324 GGGT-ATTTCAGTAATTTCAT-AATCGA
1 GGGTAATTT-GGTAATTTTATAAATCGA
** *
66680350 GGGTAAAATGGTAATTTTGTAAA-CTGA
1 GGGTAATTTGGTAATTTTATAAATC-GA
** *
66680377 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
**** * *
66680404 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** * *
66680431 GGGTAAAATGTTAATTCTATAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** *
66680458 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAATTTGGTAATTTTATAAATCGA
** *
66680485 GGGTGAA-ACGGTAATTCTATAAATCGA
1 GGGT-AATTTGGTAATTTTATAAATCGA
* * *
66680512 GGGTACTTTGGTAATTTTACAAATTGA
1 GGGTAATTTGGTAATTTTATAAATCGA
66680539 GG
1 GG
66680541 ACATTTTAGT
Statistics
Matches: 305, Mismatches: 58, Indels: 30
0.78 0.15 0.08
Matches are distributed among these distances:
25 5 0.02
26 35 0.11
27 253 0.83
28 12 0.04
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (27 bp):
GGGTAATTTGGTAATTTTATAAATCGA
Found at i:66680527 original size:81 final size:81
Alignment explanation
Indices: 66680332--66680516 Score: 277
Period size: 81 Copynumber: 2.3 Consensus size: 81
66680322 GGGGGTATTT
* *
66680332 CAGTAATT-TCAT-AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTT
1 CAGTAATTCT-ATAAATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTT
66680395 GTAAATCGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* *
66680412 CAGTAATTCTGTAAATCGAGGGTAAAATGTTAATTCTATAAA-TCGAGGGTAAAATGGTAATTTT
1 CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAACT-GAGGGTAAAATGGTAATTTT
*
66680476 GTAAATCGAGGGTGAAA
65 GTAAATCGAGGGTAAAA
*
66680493 CGGTAATTCTATAAATCGAGGGTA
1 CAGTAATTCTATAAATCGAGGGTA
66680517 CTTTGGTAAT
Statistics
Matches: 95, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
80 10 0.11
81 85 0.89
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (81 bp):
CAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAACTGAGGGTAAAATGGTAATTTTG
TAAATCGAGGGTAAAA
Found at i:66690705 original size:41 final size:41
Alignment explanation
Indices: 66690648--66690730 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
66690638 GTTGAAAGCA
* *
66690648 TTACTGACAGAGGCACCACTGTTAGTTTAGCCTGAATCAGG
1 TTACTGACAGAGGCACCACTGTTAGTTCAGCCCGAATCAGG
* *
66690689 TTACTGATAGAGGCACCAGTGTTAGTTCAGCCCGAATCAGG
1 TTACTGACAGAGGCACCACTGTTAGTTCAGCCCGAATCAGG
66690730 T
1 T
66690731 AAAGAATTCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (41 bp):
TTACTGACAGAGGCACCACTGTTAGTTCAGCCCGAATCAGG
Found at i:66693764 original size:23 final size:23
Alignment explanation
Indices: 66693737--66693783 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
66693727 AAAGAATGGT
66693737 TGATTAAATAAGTTAATTCTGAA
1 TGATTAAATAAGTTAATTCTGAA
*
66693760 TGATTAAATAAGTTAATTTTGAA
1 TGATTAAATAAGTTAATTCTGAA
66693783 T
1 T
66693784 TCATATAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.13, T:0.43
Consensus pattern (23 bp):
TGATTAAATAAGTTAATTCTGAA
Found at i:66700392 original size:17 final size:17
Alignment explanation
Indices: 66700370--66700444 Score: 51
Period size: 17 Copynumber: 4.1 Consensus size: 17
66700360 CCAATTGGGA
66700370 CGTGTGGGCCACACGGG
1 CGTGTGGGCCACACGGG
* * *
66700387 CGTGTGGGAATCTAGACCAGGC
1 CGTGTGGG---CCACA-C-GGG
*
66700409 CGTGTGTGCCACACGGG
1 CGTGTGGGCCACACGGG
*
66700426 CTTGTGGGCTCACACGGG
1 CGTGTGGGC-CACACGGG
66700444 C
1 C
66700445 AAGCCACATG
Statistics
Matches: 43, Mismatches: 9, Indels: 11
0.68 0.14 0.17
Matches are distributed among these distances:
17 17 0.40
18 10 0.23
19 3 0.07
20 3 0.07
21 1 0.02
22 9 0.21
ACGTcount: A:0.15, C:0.28, G:0.40, T:0.17
Consensus pattern (17 bp):
CGTGTGGGCCACACGGG
Found at i:66704825 original size:21 final size:20
Alignment explanation
Indices: 66704801--66704850 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
66704791 TATATGAGTA
*
66704801 AATTTAACATCAATTTAATGT
1 AATTTAAC-TCAATTTAATCT
* *
66704822 AATTCATACTCAATTTAGTCT
1 AATTTA-ACTCAATTTAATCT
66704843 AATTTAAC
1 AATTTAAC
66704851 CTTTAGAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.42
Consensus pattern (20 bp):
AATTTAACTCAATTTAATCT
Found at i:66708891 original size:40 final size:40
Alignment explanation
Indices: 66708783--66709032 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
66708773 CGGGATTTAA
* * * * *
66708783 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
66708823 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66708863 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66708903 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66708943 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66708983 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66709023 CCGGATATAT
1 CCGGATATAT
66709033 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:66716997 original size:40 final size:40
Alignment explanation
Indices: 66716889--66717138 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
66716879 CGGGATTTAA
* * * * *
66716889 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
66716929 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66716969 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66717009 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66717049 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66717089 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66717129 CCGGATATAT
1 CCGGATATAT
66717139 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:66721437 original size:127 final size:128
Alignment explanation
Indices: 66721033--66721676 Score: 1026
Period size: 127 Copynumber: 5.0 Consensus size: 128
66721023 TGACTTGAAA
* *
66721033 AACTAGATTAACAAACTTGAATGAGCTAAACCCAAATTAACTCGACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
* *
66721098 AAAATGATTAAAAAA-ATAAAATTCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAGTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
* *
66721160 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTTG-CTTGACCAAAAAAAACTTAAAATT
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAA-TTGACTCGACCAAAAATAACTTAAAATT
66721224 CAAAATGATTAAAAAAGTTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
65 CAAAATGATTAAAAAAG-TTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
* * *
66721289 AACTCGATTAACAAACCTGAATGAGCTAAACCCAAATTGGCTCGATCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
* * *
66721354 AAAATGATTAAAAAA-TTAAAATCCGAATTTACCTTATACAATTCATTATACCATAACTTCAT
66 AAAATGATTAAAAAAGTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
66721416 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
*
66721481 AAAATGATTAAAAAAAAGTTTAAAATTCGAATTTACCCTAAACAATTCATAATACCATAACTTCA
66 AAAATGATT--AAAAAAG-TTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCA
66721546 T
128 T
* *
66721547 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAAATGACTCGATCAAAAGA-AACTTAAAATT
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAA-ATAACTTAAAATT
***
66721611 CAAAATGATTAAAAAAAGTTTAAAATAAAAATTTACCCTAAACAATTCATAATACCATAACTTCA
65 CAAAATGATT-AAAAAAG-TTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCA
66721676 T
128 T
66721677 CATTAAGTGT
Statistics
Matches: 483, Mismatches: 25, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
127 188 0.39
128 5 0.01
129 123 0.25
130 53 0.11
131 113 0.23
132 1 0.00
ACGTcount: A:0.48, C:0.18, G:0.07, T:0.27
Consensus pattern (128 bp):
AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
AAAATGATTAAAAAAGTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
Found at i:66721493 original size:256 final size:257
Alignment explanation
Indices: 66721033--66721676 Score: 1060
Period size: 256 Copynumber: 2.5 Consensus size: 257
66721023 TGACTTGAAA
* * *
66721033 AACTAGATTAACAAACTTGAATGAGCTAAACCCAAATTAACTCGACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGATCAAAAATAACTTAAAATTC
* *
66721098 AAAATGATTAAAAAAATAAAATTCGAATTTACCCTAAACAATTCATAATACCATAACTTCATAAC
66 AAAATGATTAAAAAATTAAAATACGAATTTACCCTAAACAATTCATAATACCATAACTTCATAAC
*
66721163 TCGATTAACAAACTTGAATGAGCTAAACCCAAATTTGCTTGACCAAAAAAAACTTAAAATTCAAA
131 TCGATTAACAAACTTGAATGAGCTAAACCCAAATTTGCTCGACCAAAAAAAACTTAAAATTCAAA
66721228 ATGATT-AAAAAAGTTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
196 ATGATTAAAAAAAGTTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
* *
66721289 AACTCGATTAACAAACCTGAATGAGCTAAACCCAAATTGGCTCGATCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGATCAAAAATAACTTAAAATTC
* * * *
66721354 AAAATGATTAAAAAATTAAAATCCGAATTTACCTTATACAATTCATTATACCATAACTTCATAAC
66 AAAATGATTAAAAAATTAAAATACGAATTTACCCTAAACAATTCATAATACCATAACTTCATAAC
*
66721419 TCGATTAACAAACTTGAATGAGCTAAACCCAAA-TTGACTCGACCAAAAATAACTTAAAATTCAA
131 TCGATTAACAAACTTGAATGAGCTAAACCCAAATTTG-CTCGACCAAAAAAAACTTAAAATTCAA
*
66721483 AATGATTAAAAAAAAGTTTAAAATTCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
195 AATGATT-AAAAAAAGTTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
*
66721547 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAAATGACTCGATCAAAAGA-AACTTAAAATT
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGATCAAAA-ATAACTTAAAATT
**
66721611 CAAAATGATTAAAAAAAGTTTAAAATAAAAATTTACCCTAAACAATTCATAATACCATAACTTCA
65 CAAAATGATT-AAAAAA--TTAAAATACGAATTTACCCTAAACAATTCATAATACCATAACTTCA
66721676 T
127 T
66721677 CATTAAGTGT
Statistics
Matches: 359, Mismatches: 22, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
255 3 0.01
256 185 0.52
258 123 0.34
259 7 0.02
261 41 0.11
ACGTcount: A:0.48, C:0.18, G:0.07, T:0.27
Consensus pattern (257 bp):
AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGATCAAAAATAACTTAAAATTC
AAAATGATTAAAAAATTAAAATACGAATTTACCCTAAACAATTCATAATACCATAACTTCATAAC
TCGATTAACAAACTTGAATGAGCTAAACCCAAATTTGCTCGACCAAAAAAAACTTAAAATTCAAA
ATGATTAAAAAAAGTTTAAAATCCGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
Found at i:66722709 original size:125 final size:126
Alignment explanation
Indices: 66722477--66723395 Score: 658
Period size: 140 Copynumber: 7.0 Consensus size: 126
66722467 TGTTTTCTTA
* * * * *
66722477 GGCATACTATTGGACAAAACCAACTCTTATTTAAGTGTTGTCTTAGGCATGCATAT-CCAACCCT
1 GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCT
* * *
66722541 TATACATAGAGTTGGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTT
66 TATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTT
* *
66722602 GGCATAGTGTTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGTATATCCCAACCCT
1 GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCT
* * * * * * *
66722667 TATAC-AA-AGTTGGCCAAAAGGGTATGTCGACTAGGCTGTCCCAATAATTAGGAAAGTGTCGAC
66 TATACAAAGAGTTGGCC-AAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAA--GT----
66722730 CCAAAAGTGT
124 ------GT-T
* * ** * * * *
66722740 CGGCATAGTGTCGGATAAAGCTGACTCTTATTTAAGCGTTGCCTTAAGCAAGCATATCCTAACCA
1 -GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCC
* *
66722805 TTATACAAAGAGTTGGCCAAAGCGTACGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTC
65 TTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTT
**** * *
66722867 ATTTTAG-GACTGGACAAAGCCAACTCTTATTTAAGC-ATGCCTTAGGCATGCATA-CCTCAA-C
1 GGCATAGTG-TTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCC-CAACC
* * ** *
66722928 CTTCATACAAAGAGTTGGCCAAAACGTATGTTGGCAAGTCTATCTGAACACTTAGGAAAGTGTC
64 CTT-ATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTT
* * * * *
66722992 GCCCTAGAAGTGTTGTCTTAGGACTAGACAAAGCCAATTCTTATTTAAGCATTGTCTTAGGCATG
1 G-GC-A-TA--G-TG--TT--G----GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATG
* * * *
66723057 CATATCACAACCCTTATACAAAGAGTTAGCCAAAGCGTATGTTGGCAAGTTTATCCCAACACTTA
52 CATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTA
*
66723122 GGAAAGTGTCAC
117 GGAAAGTGT--T
** * * *
66723134 CCCAAAAGTGTCTTCTTAGGACTAAACAAAGCCAACTCTTATTTAAGTGTTGCCTTAGACATGCA
1 GGC-ATAGTG-----TT-GG-----ACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCA
* * *
66723199 TATCCCAACCCATATACAAAAAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGG
54 TATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGG
*
66723264 AAAGTGTCAC
119 AAAGTGT--T
** * * ** ** *
66723274 CCCAAAAGTG-T---C--ATCTTAGGCTTATTTAAGCGTTGCCTTAGACATGCATATCCCAACCC
1 GGC-ATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCC
* * * * **
66723333 TTATACAAAAAGTTGGCCAAAGCGTATGTTGGTAAGTTTATCCCAACACTTAATAAAGTGTT
65 TTATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTT
66723395 G
1 G
66723396 CCCCAAAAGT
Statistics
Matches: 651, Mismatches: 95, Indels: 100
0.77 0.11 0.12
Matches are distributed among these distances:
123 97 0.15
124 13 0.02
125 154 0.24
126 38 0.06
127 2 0.00
128 3 0.00
130 1 0.00
132 1 0.00
133 1 0.00
134 1 0.00
135 2 0.00
137 4 0.01
138 4 0.01
139 86 0.13
140 227 0.35
141 16 0.02
142 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.27
Consensus pattern (126 bp):
GGCATAGTGTTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCT
TATACAAAGAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTT
Found at i:66722985 original size:265 final size:263
Alignment explanation
Indices: 66722489--66723393 Score: 879
Period size: 265 Copynumber: 3.4 Consensus size: 263
66722479 CATACTATTG
* * *
66722489 GACAAAACCAACTCTTATTTAAGTGTTGTCTTAGGCATGCATATCCAACCCTTATACATAGAGTT
1 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCAACCCTTATACAAAGAGTT
* ***** *
66722554 GGCCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGGCATAGTG-TTGGACA
66 GGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCATTTTAG-GACTGGACA
* *
66722618 AAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGTATATCCCAACCCTTATAC-AAAGTTGGCC
130 AAGCCAACTCTTATTTAAGC-TTGCCTTAGGCATGCATATCCCAACCCTTATACAAAAGTTGGCC
* * * * * * * *
66722682 AAAAGGGTATGTCGACTAGGCTGTCCCAATAATTAGGAAAGTGTCGACCCAAAAGTGTCGGCATA
194 AAAA-CGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGACCCAAAAGTGTCGGCATA
* *
66722747 GTGTC-G
258 G-GACTA
* ** * * * *
66722753 GATAAAGCTGACTCTTATTTAAGCGTTGCCTTAAGCAAGCATATCCTAACCATTATACAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCC-AACCCTTATACAAAGAGT
* *
66722818 TGGCCAAAGCGTACGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCATTTTAGGACTGGACA
65 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCATTTTAGGACTGGACA
*
66722883 AAGCCAACTCTTATTTAAGCATGCCTTAGGCATGCATA-CCTCAA-CCTTCATACAAAGAGTTGG
130 AAGCCAACTCTTATTTAAGCTTGCCTTAGGCATGCATATCC-CAACCCTT-ATACAAA-AGTTGG
** * * * *
66722946 CCAAAACGTATGTTGGCAAGTCTATCTGAACACTTAGGAAAGTGTCG-CCCTAGAAGTGTTGTCT
192 CCAAAACGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGACCC-AAAAGTGTCGGCA
66723010 TAGGACTA
256 TAGGACTA
* *
66723018 GACAAAGCCAATTCTTATTTAAGCATTGTCTTAGGCATGCATATCACAACCCTTATACAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATC-CAACCCTTATACAAAGAGT
* *
66723083 TAGCCAAAGCGTATGTTGGCAAGTTTATCCCAACACTTAGGAAAGTGTCACCCCAAAAGTGTCTT
65 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGT-----C---A-----TT
** * * *
66723148 CTTAGGACTAAACAAAGCCAACTCTTATTTAAGTGTTGCCTTAGACATGCATATCCCAACCCATA
117 -TTAGGACTGGACAAAGCCAACTCTTATTTAAG-CTTGCCTTAGGCATGCATATCCCAACCCTTA
*
66723213 TACAAAAAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTC-ACCCC
180 TAC-AAAAGTTGGCCAAAACGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGA-CCC
66723277 AAAAGTGT---CAT----CTTA
243 AAAAGTGTCGGCATAGGAC-TA
* * *
66723292 G-----G------CTTATTTAAGCGTTGCCTTAGACATGCATATCCCAACCCTTATACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATAT-CCAACCCTTATACAAAGAGT
* * **
66723346 TGGCCAAAGCGTATGTTGGTAAGTTTATCCCAACACTTAATAAAGTGT
65 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGT
66723394 TGCCCCAAAA
Statistics
Matches: 540, Mismatches: 70, Indels: 63
0.80 0.10 0.09
Matches are distributed among these distances:
263 96 0.18
264 68 0.13
265 232 0.43
266 13 0.02
269 1 0.00
270 1 0.00
273 2 0.00
274 3 0.01
277 2 0.00
278 2 0.00
279 30 0.06
280 79 0.15
281 11 0.02
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (263 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGTCTTAGGCATGCATATCCAACCCTTATACAAAGAGTT
GGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCATTTTAGGACTGGACAA
AGCCAACTCTTATTTAAGCTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAAGTTGGCCAA
AACGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGACCCAAAAGTGTCGGCATAGGA
CTA
Found at i:66723391 original size:123 final size:123
Alignment explanation
Indices: 66723171--66723405 Score: 398
Period size: 123 Copynumber: 1.9 Consensus size: 123
66723161 AAAGCCAACT
*
66723171 CTTATTTAAGTGTTGCCTTAGACATGCATATCCCAACCCATATACAAAAAGTTGGCCAAAGCGTA
1 CTTATTTAAGCGTTGCCTTAGACATGCATATCCCAACCCATATACAAAAAGTTGGCCAAAGCGTA
*
66723236 TGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCACCCCAAAAGTGTCATCTTAGG
66 TGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGTCACCCCAAAAGTGTCATCTTAGG
*
66723294 CTTATTTAAGCGTTGCCTTAGACATGCATATCCCAACCCTTATACAAAAAGTTGGCCAAAGCGTA
1 CTTATTTAAGCGTTGCCTTAGACATGCATATCCCAACCCATATACAAAAAGTTGGCCAAAGCGTA
* * * **
66723359 TGTTGGTAAGTTTATCCCAACACTTAATAAAGTGTTGCCCCAAAAGT
66 TGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGTCACCCCAAAAGT
66723406 ATTGTCTTAT
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
123 104 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (123 bp):
CTTATTTAAGCGTTGCCTTAGACATGCATATCCCAACCCATATACAAAAAGTTGGCCAAAGCGTA
TGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGTCACCCCAAAAGTGTCATCTTAGG
Found at i:66725659 original size:23 final size:21
Alignment explanation
Indices: 66725617--66725659 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
66725607 AAATTTTGAT
*
66725617 TAATTATTTTAAATTAAATTA
1 TAATTATTTTAAATCAAATTA
*
66725638 TAATTATATTTAGATCACAATT
1 TAATTAT-TTTAAATCA-AATT
66725660 TAGTAATATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 7 0.39
23 4 0.22
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (21 bp):
TAATTATTTTAAATCAAATTA
Found at i:66730150 original size:21 final size:21
Alignment explanation
Indices: 66730124--66730164 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
66730114 AGACAAGCGA
* *
66730124 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
66730145 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
66730165 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:66734701 original size:28 final size:29
Alignment explanation
Indices: 66734636--66734715 Score: 99
Period size: 28 Copynumber: 2.7 Consensus size: 29
66734626 TGCATTAGTA
* *
66734636 TATATTTTTATAATTTTTAGAAGAATTAAAT
1 TATAATTTTATTATTTTT--AAGAATTAAAT
*
66734667 TAAAATTTTATTATTTTTAA-AATTAAAT
1 TATAATTTTATTATTTTTAAGAATTAAAT
66734695 TATAATTTTATTATTTATTAA
1 TATAATTTTATTATTT-TTAA
66734716 CTTAAAATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 23 0.52
29 6 0.14
31 15 0.34
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (29 bp):
TATAATTTTATTATTTTTAAGAATTAAAT
Found at i:66734714 original size:23 final size:25
Alignment explanation
Indices: 66734659--66734729 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 25
66734649 TTTTTAGAAG
66734659 AATTAAATTAAAATTTTATTATTTTT
1 AATTAAATTAAAATTTTATTA-TTTT
*
66734685 AAAATTAAATTATAATTTTATTA-TTT
1 --AATTAAATTAAAATTTTATTATTTT
*
66734711 -ATTAACTTAAAATTGTTAT
1 AATTAAATTAAAATT-TTAT
66734730 CAACTTTAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
23 12 0.31
24 4 0.10
26 3 0.08
28 20 0.51
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (25 bp):
AATTAAATTAAAATTTTATTATTTT
Found at i:66737721 original size:4 final size:4
Alignment explanation
Indices: 66737712--66737972 Score: 477
Period size: 4 Copynumber: 65.2 Consensus size: 4
66737702 TGTTCAACAC
* *
66737712 ACAT ACAT ACAT ACAC ACAT ACAT ACAT ACAC ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
66737760 ACAT ACAC ACAT ACAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
66737808 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
66737856 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
66737904 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
66737952 ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT A
66737973 AATTGTCCAA
Statistics
Matches: 247, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 247 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:66738730 original size:27 final size:27
Alignment explanation
Indices: 66738700--66738753 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
66738690 ATAAAAGCCT
*
66738700 AAATTTATAGATATGAAATTTGGGGGA
1 AAATTTATAGATATGAAATTTGAGGGA
*
66738727 AAATTTATTGATATGAAATTTGAGGGA
1 AAATTTATAGATATGAAATTTGAGGGA
66738754 TTTTTAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (27 bp):
AAATTTATAGATATGAAATTTGAGGGA
Found at i:66739716 original size:56 final size:56
Alignment explanation
Indices: 66739636--66739747 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
66739626 GACATTTTCA
66739636 TGAATGTTTGGTTACTTTGATATGTGGTTGGGTTGTATGTATACATGATTATGAAT
1 TGAATGTTTGGTTACTTTGATATGTGGTTGGGTTGTATGTATACATGATTATGAAT
66739692 TGAATGTTTGGTTACTTTGATATGTGGTTGGGTTGTATGTATACATGATTATGAAT
1 TGAATGTTTGGTTACTTTGATATGTGGTTGGGTTGTATGTATACATGATTATGAAT
66739748 GAAATAAGGC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.23, C:0.04, G:0.27, T:0.46
Consensus pattern (56 bp):
TGAATGTTTGGTTACTTTGATATGTGGTTGGGTTGTATGTATACATGATTATGAAT
Found at i:66748720 original size:30 final size:30
Alignment explanation
Indices: 66748686--66748756 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
66748676 TGGGTAGAGG
*
66748686 CACGGGCGTGTGTCTCAGCCGTGTACGACA
1 CACGGGCATGTGTCTCAGCCGTGTACGACA
66748716 CACGGGCATGTGTCTCAGCCGTGTACGACA
1 CACGGGCATGTGTCTCAGCCGTGTACGACA
*
66748746 CACGGTCATGT
1 CACGGGCATGT
66748757 TACACGGTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (30 bp):
CACGGGCATGTGTCTCAGCCGTGTACGACA
Found at i:66749571 original size:26 final size:26
Alignment explanation
Indices: 66749535--66749604 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
66749525 ACATTCCGAC
* *
66749535 CCACAACTCGTGTGAGTAGGCCCATT
1 CCACAACTCGTGTGAGCAGACCCATT
*
66749561 CCACAACTCGTATGAGCAGACCCATT
1 CCACAACTCGTGTGAGCAGACCCATT
* * *
66749587 TCACAGCTTGTGTGAGCA
1 CCACAACTCGTGTGAGCA
66749605 ACAATGTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
CCACAACTCGTGTGAGCAGACCCATT
Found at i:66755412 original size:26 final size:25
Alignment explanation
Indices: 66755383--66755445 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 25
66755373 ATGCTCAATC
*
66755383 AGTCATATATCTCATAAGGGCATAAT
1 AGTCATTTATCTCAT-AGGGCATAAT
* *
66755409 AGTCATTTTACCTCATAGGGTATAAT
1 AGTCA-TTTATCTCATAGGGCATAAT
66755435 AGTCATTTATC
1 AGTCATTTATC
66755446 AATTTGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 5 0.16
26 19 0.59
27 8 0.25
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (25 bp):
AGTCATTTATCTCATAGGGCATAAT
Found at i:66757758 original size:19 final size:18
Alignment explanation
Indices: 66757716--66757758 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
66757706 AGACACAATG
*
66757716 AAAATTTAAAATTGAGTT
1 AAAATTTAAAATTGAGTC
**
66757734 GCAATTTAAAACTTGAGTC
1 AAAATTTAAAA-TTGAGTC
66757753 AAAATT
1 AAAATT
66757759 GACCTTTTTA
Statistics
Matches: 19, Mismatches: 5, Indels: 1
0.76 0.20 0.04
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.35
Consensus pattern (18 bp):
AAAATTTAAAATTGAGTC
Found at i:66764393 original size:13 final size:13
Alignment explanation
Indices: 66764375--66764404 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
66764365 CTTCGAATAG
*
66764375 GAAAATGAGAGGA
1 GAAAATGAGAGAA
66764388 GAAAATGAGAGAA
1 GAAAATGAGAGAA
66764401 GAAA
1 GAAA
66764405 GAAGAGATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (13 bp):
GAAAATGAGAGAA
Found at i:66768542 original size:20 final size:21
Alignment explanation
Indices: 66768509--66768547 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
66768499 ATTAGGGACT
66768509 TTTTAATTAAATG-CAAATGG
1 TTTTAATTAAATGCCAAATGG
**
66768529 TTTTAATTTGATGCCAAAT
1 TTTTAATTAAATGCCAAAT
66768548 TTTATGGCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.44
Consensus pattern (21 bp):
TTTTAATTAAATGCCAAATGG
Found at i:66771403 original size:39 final size:39
Alignment explanation
Indices: 66771377--66771495 Score: 220
Period size: 39 Copynumber: 3.1 Consensus size: 39
66771367 GTCCAGCACG
66771377 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
*
66771416 TAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
*
66771455 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
66771494 TA
1 TA
66771496 TATATTCACA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (39 bp):
TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
Found at i:66779519 original size:39 final size:39
Alignment explanation
Indices: 66779471--66779594 Score: 203
Period size: 39 Copynumber: 3.2 Consensus size: 39
66779461 TATATGTCCA
* *
66779471 GCATGTAGCCTGCGGACCTAAAGTCCGGATATAATTCTC
1 GCATATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
* * *
66779510 GCATATAGCCTACAGACATGAAGTCCGGATATAATTCTC
1 GCATATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
66779549 GCATATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
1 GCATATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
66779588 GCATATA
1 GCATATA
66779595 TATATTCACA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (39 bp):
GCATATAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
Found at i:66781763 original size:16 final size:16
Alignment explanation
Indices: 66781742--66781772 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66781732 TTATGCGTGA
*
66781742 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
66781758 AAAATACAAAAGACA
1 AAAATACAAAAGACA
66781773 TTATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:66790383 original size:89 final size:89
Alignment explanation
Indices: 66790165--66790366 Score: 379
Period size: 89 Copynumber: 2.3 Consensus size: 89
66790155 ATTTGACGGA
*
66790165 GAGCAGATCGAAGATATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
66790230 ATTTGGCATCCTTGCGTTTACAAG
66 ATTTGGCATCCTTGCGTTTACAAG
66790254 GAGCAGATCGAAGACATAGCA-AGTCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGAT
1 GAGCAGATCGAAGACATAGCAGA-TCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGAT
66790318 GATTTGGCATCCTTGCGTTTACAAG
65 GATTTGGCATCCTTGCGTTTACAAG
66790343 GAGCAGATCGAAGACATAGCAGAT
1 GAGCAGATCGAAGACATAGCAGAT
66790367 TTGGCTTTCA
Statistics
Matches: 110, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
88 1 0.01
89 108 0.98
90 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (89 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
ATTTGGCATCCTTGCGTTTACAAG
Found at i:66790611 original size:44 final size:43
Alignment explanation
Indices: 66790563--66790811 Score: 336
Period size: 44 Copynumber: 5.7 Consensus size: 43
66790553 TGTTTACAAG
*
66790563 GAGCAGATCGAAGATAGCAGACTTGGCGTCTCTGTATTATCAGA
1 GAGCAGATCGAAGATAGCAGA-TTGGCGTCTCTGTATTGTCAGA
* * *
66790607 GAGCAGATCGGAGAAAACAGATTAGGCGTCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATT-GGCGTCTCTGTATTGTCAGA
*
66790651 GAGCAGATCGAAGATAGCAGATTAGGCATCTCTGTATTGTCAGA
1 GAGCAGATCGAAGATAGCAGATT-GGCGTCTCTGTATTGTCAGA
* *
66790695 GAGCAGATTGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGA
1 GAGCAGATCGAAGATAGCAGA-TTGGCGTCTCTGTATTGTCAGA
* * *
66790739 GAGCAGATTGAAGATAGCAGATTTGCCGTCTCTGTATTGCCAGA
1 GAGCAGATCGAAGATAGCAGA-TTGGCGTCTCTGTATTGTCAGA
* *
66790783 GAGTAGATCGAAGATAACAGATCTGGCGT
1 GAGCAGATCGAAGATAGCAGAT-TGGCGT
66790812 TCCTGAGTTT
Statistics
Matches: 184, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
43 3 0.02
44 179 0.97
45 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (43 bp):
GAGCAGATCGAAGATAGCAGATTGGCGTCTCTGTATTGTCAGA
Found at i:66790720 original size:309 final size:305
Alignment explanation
Indices: 66790080--66790763 Score: 737
Period size: 309 Copynumber: 2.2 Consensus size: 305
66790070 TGTTTACGCT
* * * * *
66790080 GAAGTAGATCCAAGATGATTTGGCATATCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTG
1 GAAGCAGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGAAACAGATTTG
* * *
66790145 GCATCTCCATATTTGACGGAGAGCAGATCGAAGATATAGCAGATCTAACCTTCGGATGTTTTCAC
66 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTAGGATGTTTTCAC
*
66790210 ATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGACATAGCA
131 ATCGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGA-ATAGCA
* * * * * * * *
66790275 AGTCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTAC
195 ACTCTAACCTTCGGATATTATCACA-CGAAGCAGATCCAAAAAGATTAGGCATCCTTGCATTTAC
* * *
66790340 AAGGAGCAGATCGAAGACATAGCAGATTTGGCTTTCACGTGTTTACGTT
259 AAGGAGCAGATCGAAGA-ATAGCAGATTAGGCTATCACGTGTTTA-GTA
*
66790389 GAAGTAGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGAAACAGATTTG
1 GAAGCAGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGAAACAGATTTG
* **
66790454 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTATGATGTTTTTGC
66 GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTAGGATGTTTTCAC
*
66790519 ATCGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAGCAGATCGAAG-ATAGCAG
131 ATCGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGAATAGCA-
** * * * * * *
66790583 ACT-TGGCGTCTCTG-TATTATCAGA-G-AGCAGATCGGAGAAAACAGATTAGGCGT-CTCTGTA
195 ACTCTAACCT-TCGGATATTATCACACGAAGCAGATC---CAAAA-AGATTAGGCATCCT-TGCA
*
66790643 TTGT-C-AGAGAGCAGATCGAAG-ATAGCAGATTAGGC-ATCTC-TGTATT-GTCA
254 TT-TACAAG-GAGCAGATCGAAGAATAGCAGATTAGGCTATCACGTGT-TTAGT-A
* * * *
66790693 GAGAGCAGAT-TGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATTGAAGATAGC
1 GA-AGCAGATCT-AAGAT----GATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGA-AAC
66790757 AGATTTG
59 AGATTTG
66790764 CCGTCTCTGT
Statistics
Matches: 320, Mismatches: 37, Indels: 35
0.82 0.09 0.09
Matches are distributed among these distances:
303 2 0.01
304 13 0.04
305 17 0.05
306 13 0.04
307 23 0.07
308 31 0.10
309 212 0.66
310 9 0.03
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (305 bp):
GAAGCAGATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAGCAAATTGAAGAAACAGATTTG
GCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTAGGATGTTTTCAC
ATCGAAGCAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCGAAGAATAGCAA
CTCTAACCTTCGGATATTATCACACGAAGCAGATCCAAAAAGATTAGGCATCCTTGCATTTACAA
GGAGCAGATCGAAGAATAGCAGATTAGGCTATCACGTGTTTAGTA
Found at i:66790851 original size:132 final size:130
Alignment explanation
Indices: 66790553--66790844 Score: 347
Period size: 132 Copynumber: 2.2 Consensus size: 130
66790543 GGCATCCTTG
* * * * * *
66790553 TGTTTACAAGGAGCAGATCGAAGATAGCAGACTTGGCGTCTCTGTATTATCAGAGAGCAGATCGG
1 TGTTTGCAAGAAGCAGATTGAAGATAGCAGATTTGGCGTCTCTATATTATCAGAGAGCAGATCGA
* * *
66790618 AGAAAACAGATTAGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTAGGCATCTC
66 AGAAAACAGATTAGCCGTCTCTGTATTGCCAGAGAGCAGATCGAAGATAACAGATTAGGCATCTC
*
66790683 TGTATTGTC-AGAGAGCAGATTGAAGATAGCAGATTTGGCGTCTCTATATTGTCAGAGAGCAGAT
1 TGT-TTG-CAAGA-AGCAGATTGAAGATAGCAGATTTGGCGTCTCTATATTATCAGAGAGCAGAT
* * * * * *
66790747 TGAAGATAGCAGATTTGCCGTCTCTGTATTGCCAGAGAGTAGATCGAAGATAACAGATCT-GGCG
63 CGAAGAAAACAGATTAGCCGTCTCTGTATTGCCAGAGAGCAGATCGAAGATAACAGAT-TAGGCA
66790811 T-TCC
127 TCT-C
*
66790815 TGAGTTTGCAAGAAGCAGGTTGAAGATAGC
1 T--GTTTGCAAGAAGCAGATTGAAGATAGC
66790845 CAATTTGACA
Statistics
Matches: 137, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
130 3 0.02
131 5 0.04
132 120 0.88
133 7 0.05
134 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (130 bp):
TGTTTGCAAGAAGCAGATTGAAGATAGCAGATTTGGCGTCTCTATATTATCAGAGAGCAGATCGA
AGAAAACAGATTAGCCGTCTCTGTATTGCCAGAGAGCAGATCGAAGATAACAGATTAGGCATCTC
Found at i:66792354 original size:15 final size:15
Alignment explanation
Indices: 66792334--66792363 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
66792324 ATATAAATAA
*
66792334 TATATTATTTTATAT
1 TATATTATTATATAT
66792349 TATATTATTATATAT
1 TATATTATTATATAT
66792364 GTTTCTTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATATTATTATATAT
Found at i:66792435 original size:21 final size:21
Alignment explanation
Indices: 66792392--66792444 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
66792382 TTATATATAC
* ** *
66792392 ATTTTACTTTATATATTATTT
1 ATTTTACTATATATAAAAATT
66792413 ATTTTACTATATATAAAAATT
1 ATTTTACTATATATAAAAATT
*
66792434 ATTATA-TATAT
1 ATTTTACTATAT
66792445 TTTTATCTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 5 0.19
21 22 0.81
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTACTATATATAAAAATT
Found at i:66792540 original size:32 final size:33
Alignment explanation
Indices: 66792511--66792580 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
66792501 TCAATATATG
66792511 TTTTATT-CATTATATTATTT-TTATTATATAGA
1 TTTTATTGCATTAT-TTATTTATTATTATATAGA
* * *
66792543 TTTTATTGTATTATTTATTTATTATTATGTACA
1 TTTTATTGCATTATTTATTTATTATTATATAGA
66792576 TTTTA
1 TTTTA
66792581 AAAAAAACTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (33 bp):
TTTTATTGCATTATTTATTTATTATTATATAGA
Found at i:66794233 original size:12 final size:13
Alignment explanation
Indices: 66794180--66794222 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
66794170 AAAGTCTAAG
*
66794180 AAAATAAAAAGAA
1 AAAATAAGAAGAA
66794193 AACAACTAA-AAGAA
1 AA-AA-TAAGAAGAA
66794207 AAAATAAGAAGAA
1 AAAATAAGAAGAA
66794220 AAA
1 AAA
66794223 GAAAGAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 3 0.11
13 12 0.44
14 9 0.33
15 3 0.11
ACGTcount: A:0.79, C:0.05, G:0.09, T:0.07
Consensus pattern (13 bp):
AAAATAAGAAGAA
Found at i:66798591 original size:40 final size:40
Alignment explanation
Indices: 66798528--66798711 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
66798518 TATTCGAATG
* *
66798528 ATATCCGGGCTAAG-TCCCAAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
66798568 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * *
66798608 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
66798648 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
66798688 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
66798712 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
40 124 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:66798661 original size:80 final size:80
Alignment explanation
Indices: 66798528--66798711 Score: 262
Period size: 80 Copynumber: 2.3 Consensus size: 80
66798518 TATTCGAATG
* * * *
66798528 ATATCCGGGCTAAGTCCCAAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* * *
66798592 ATTTGTGCGAGTTACT
65 ATTTATGCGAGTGACC
* *
66798608 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
66798673 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
66798688 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
66798712 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
79 1 0.01
80 92 0.99
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:66800836 original size:15 final size:15
Alignment explanation
Indices: 66800816--66800851 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
66800806 TCAAGTATAC
66800816 GAATTTGGTTTATGT
1 GAATTTGGTTTATGT
66800831 GAATTTGGTTTATGT
1 GAATTTGGTTTATGT
66800846 GAATTT
1 GAATTT
66800852 CGAGTTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (15 bp):
GAATTTGGTTTATGT
Found at i:66805341 original size:46 final size:48
Alignment explanation
Indices: 66805228--66805444 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 48
66805218 GTTATTTGTT
* * * *
66805228 AGCCAGTGTAAGACCATGTCTGGGACATGGTATCGTCATTC-AGACG-AG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACTCGAGATGTAG
* *
66805276 AGCTAGTGTAAGTCATGTCTGGGACATGCATCGGC-CTCGAGATGTA-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACTCGAGATGTAG
**
66805322 AGCCAGTGTAAGACATGTCTTAGACATGCATCGG--CTACGAGATGT--
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACT-CGAGATGTAG
* * * *
66805367 -GTCAGTGTAAGACTATGTCTAGGACATGGCATCGGCAC-GGATATGTGAG
1 AGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCACTCGAGATGT-AG
*
66805416 AGCTAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGA-CATGTCTGGGACATG
66805445 GTGTCGGCCT
Statistics
Matches: 139, Mismatches: 18, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 61 0.44
47 15 0.11
48 12 0.09
49 1 0.01
50 22 0.16
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACTCGAGATGTAG
Found at i:66805539 original size:96 final size:99
Alignment explanation
Indices: 66805362--66805539 Score: 240
Period size: 96 Copynumber: 1.8 Consensus size: 99
66805352 TCGGCTACGA
* * *
66805362 GATGTGTCAGTGTAAGACTATGTCTAGGACATGGCATCGGCACGGATATGTGAGAGCTAGTGTAA
1 GATGTGTCAGTGTAAGACCACGTCTAGGACATGGCATCGGCACGGA-ATGTGAGAGCCAGTGTAA
66805427 GACCATGTCTGGGACATGGTGTCGGCCTTGATTTC
65 GACCATGTCTGGGACATGGTGTCGGCCTTGATTTC
* *
66805462 GATG-GTCAGTGTAAGACCACGTCTGGGACATGGCATC-G-ACTTG-ATG-GATGAGCCAGTGTA
1 GATGTGTCAGTGTAAGACCACGTCTAGGACATGGCATCGGCAC-GGAATGTGA-GAGCCAGTGTA
*
66805522 AGACCATGTCTGTGACAT
64 AGACCATGTCTGGGACAT
66805540 TATACCCTAT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
95 2 0.03
96 30 0.43
97 2 0.03
98 2 0.03
99 30 0.43
100 4 0.06
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (99 bp):
GATGTGTCAGTGTAAGACCACGTCTAGGACATGGCATCGGCACGGAATGTGAGAGCCAGTGTAAG
ACCATGTCTGGGACATGGTGTCGGCCTTGATTTC
Found at i:66810004 original size:48 final size:46
Alignment explanation
Indices: 66809902--66810030 Score: 159
Period size: 48 Copynumber: 2.7 Consensus size: 46
66809892 AATCGATAAG
* * * * *
66809902 TACCTATACTATGACCCGTAGCAAAATCAAGGCAACTTATCCTGGAA
1 TACCTATACCATG-CCCGTAGCCAAATCAAGGTAACTCATCCTGAAA
* *
66809949 TACCTATACCATAGCCCATAGCCAAATCAAGGTAACTCCTCCCTGAAA
1 TACCTATACCAT-GCCCGTAGCCAAATCAAGGTAACTCAT-CCTGAAA
66809997 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 TACCTATACCAT-GCCCGTAGCCAAATCAAGGTA
66810031 TCATTCACAT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
47 32 0.45
48 39 0.55
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (46 bp):
TACCTATACCATGCCCGTAGCCAAATCAAGGTAACTCATCCTGAAA
Found at i:66810583 original size:29 final size:26
Alignment explanation
Indices: 66810536--66810594 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
66810526 AATTTCATTT
66810536 ATTTCACATTTAAACCCCTCAATTTGCAC
1 ATTTCACATTTAAACCCCT--ATTTG-AC
*
66810565 ATTTCACAATTT-AATCCCTATTTGAC
1 ATTTCAC-ATTTAAACCCCTATTTGAC
66810591 ATTT
1 ATTT
66810595 TTGTCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 5 0.18
29 13 0.46
30 4 0.14
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (26 bp):
ATTTCACATTTAAACCCCTATTTGAC
Found at i:66818295 original size:13 final size:13
Alignment explanation
Indices: 66818274--66818306 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
66818264 CTTAGTTAAA
*
66818274 TTAGTTAATTAGT
1 TTAGATAATTAGT
66818287 TTAGATAATTAGT
1 TTAGATAATTAGT
66818300 TTA-ATAA
1 TTAGATAA
66818307 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:66819074 original size:47 final size:48
Alignment explanation
Indices: 66819000--66819131 Score: 169
Period size: 47 Copynumber: 2.8 Consensus size: 48
66818990 CTCAATTGAT
* *
66819000 AAGTACCTATACCATGG-CTCATAGCCAAATCAAGGTAAATTATCCCAG
1 AAGTACCTATACCATGGCCT-GTAGCCAAATCAAGGTAAATCATCCCAG
* * * *
66819048 -AGTACCTATACCATGGCCTGTCGCCAAATCAAGGTAACTCCTCCCTG
1 AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAAATCATCCCAG
* *
66819095 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTA
66819132 TCATTCGCAC
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
47 38 0.52
48 35 0.48
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAAATCATCCCAG
Found at i:66821150 original size:16 final size:16
Alignment explanation
Indices: 66821129--66821170 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
66821119 TACATGACAA
66821129 GTGATATATGAAATAT
1 GTGATATATGAAATAT
66821145 GTGATATATGAAATAT
1 GTGATATATGAAATAT
66821161 GTGATATATG
1 GTGATATATG
66821171 TTATGTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (16 bp):
GTGATATATGAAATAT
Found at i:66821645 original size:49 final size:49
Alignment explanation
Indices: 66821479--66821703 Score: 270
Period size: 49 Copynumber: 4.5 Consensus size: 49
66821469 TGAGTTCGCA
*** * * *
66821479 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAA-T-TGGTCACG
* * * * * **
66821530 TGTGTAGTACTAAGTGCAAGCTACTACGTATATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT-GGTCACG
66821580 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCACG
* * *
66821629 TGTGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCACG
*
66821678 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
66821704 TGCGTACCAG
Statistics
Matches: 151, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
49 78 0.52
50 42 0.28
51 31 0.21
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCACG
Found at i:66821654 original size:99 final size:100
Alignment explanation
Indices: 66821477--66821703 Score: 296
Period size: 99 Copynumber: 2.3 Consensus size: 100
66821467 TGTGAGTTCG
**
66821477 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
* * **
66821542 AGTGCAAGCTACTACGTATATCAGATGGTTAGGTCA
66 AGTGCAAGCTACTACATATACCAGATAATT-GGTCA
* * * * *
66821578 CGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAA-T-TGGTCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
* * *
66821641 AGTGCAAGCTACTACATGTACCGGATAATTGGTCG
66 AGTGCAAGCTACTACATATACCAGATAATTGGTCA
*
66821676 CATGTGTAGTACTATGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
66821704 TGCGTACCAG
Statistics
Matches: 110, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
98 30 0.27
99 43 0.39
100 1 0.01
101 36 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACACGTACCCGAAAACTGTGATCACGTGTGTAGTACTA
AGTGCAAGCTACTACATATACCAGATAATTGGTCA
Found at i:66825687 original size:11 final size:11
Alignment explanation
Indices: 66825671--66825695 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
66825661 CAATACACTC
66825671 CATTTAACATA
1 CATTTAACATA
66825682 CATTTAACATA
1 CATTTAACATA
66825693 CAT
1 CAT
66825696 AAAGCATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (11 bp):
CATTTAACATA
Found at i:66830588 original size:93 final size:92
Alignment explanation
Indices: 66830430--66830599 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
66830420 GGATGGTTGA
* *
66830430 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
66830495 GAGTCCGAGTTCGAGAGATGTAACTAG
66 GAGTCCGAGTTCGAGAGATGTAACTAG
* *
66830522 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66830587 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
66830600 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 23 0.32
93 50 0.68
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:66830593 original size:46 final size:46
Alignment explanation
Indices: 66830434--66830607 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
66830424 GGTTGAGCAT
* *
66830434 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*** * * * *
66830479 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
66830524 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
66830572 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66830608 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
45 22 0.21
46 49 0.46
47 33 0.31
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:66836002 original size:46 final size:45
Alignment explanation
Indices: 66835952--66836127 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
66835942 TGGTTGAGCA
66835952 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
66835998 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
66836045 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
66836091 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66836128 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:66836108 original size:93 final size:93
Alignment explanation
Indices: 66835949--66836119 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
66835939 GGATGGTTGA
* *
66835949 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66836014 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
66836042 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66836107 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66836120 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:66837530 original size:48 final size:48
Alignment explanation
Indices: 66837473--66837745 Score: 334
Period size: 48 Copynumber: 5.6 Consensus size: 48
66837463 TGTAAGCCAA
* *
66837473 TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGTTATGTGAGCCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGTTATGAGAGCTAG
* ** ** *
66837521 TGTAAGACCATGTCTGGAACATGGCATCGGTATTTTTATAAGAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGTTATGAGAGCTAG
* * *
66837569 TGTAAGACCATGTTTGGAACATGGCATCAGCCTCGATATAAGAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGTTATGAGAGCTAG
* *** *
66837617 TGTAAGACCATGTCTTGG-ACATGGTATCGGCCTTAATATGTGAGCTAG
1 TGTAAGACCATGT-TTGGAACATGGCATCGGCCTCGTTATGAGAGCTAG
*
66837665 TGTAAGACCATGTTTGGAACATGGCATCGGCAC-CAATATATGAGAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGGC-CTC-GT-TATGAGAGCTAG
*
66837715 TGTAAGACCATGTTTGGGACATGGCATCGGC
1 TGTAAGACCATGTTTGGAACATGGCATCGGC
66837746 TCTTATCCTT
Statistics
Matches: 194, Mismatches: 26, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
47 4 0.02
48 143 0.74
49 6 0.03
50 41 0.21
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGTTATGAGAGCTAG
Found at i:66840166 original size:29 final size:30
Alignment explanation
Indices: 66840133--66840194 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
66840123 TTAAACTCAA
*
66840133 AATTATTAAACTCATGTTTACACTGTTA-G
1 AATTATTAAACTCATGTGTACACTGTTACG
*
66840162 AATTATTAAATTCATGTGTACACTGTTACG
1 AATTATTAAACTCATGTGTACACTGTTACG
66840192 AAT
1 AAT
66840195 AAATTCACAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.40
Consensus pattern (30 bp):
AATTATTAAACTCATGTGTACACTGTTACG
Found at i:66849470 original size:48 final size:48
Alignment explanation
Indices: 66849408--66849621 Score: 272
Period size: 48 Copynumber: 4.5 Consensus size: 48
66849398 ATTGAGAGCT
*
66849408 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACCAGCC
* *
66849456 AGTGTAAGATATGTCTAGGACATGCATCGG-CTTCGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTT-GAGATATACCAGCC
* * ** * *
66849504 AGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGA-CGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACCAGCC
* * * *
66849550 AGTGTATGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACCAGCC
*
66849598 AGTGTAAGACTTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
66849622 GCGTCAGCTT
Statistics
Matches: 142, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
46 37 0.26
47 5 0.04
48 98 0.69
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACCAGCC
Found at i:66849555 original size:94 final size:96
Alignment explanation
Indices: 66849362--66849621 Score: 296
Period size: 94 Copynumber: 2.8 Consensus size: 96
66849352 TATGTGTGCT
* * * * * *
66849362 AGTGTAAAACATGTCTATGACATGCATCGGCCAC-ATAT-TGA-GAGCTAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATAT-ACAAGCCAGTGTAAGACATGTCT
* *
66849424 GGGACATGCATCAGCCTTGAGATATACCAGCC
65 GGGACATGCATCAGCATTGAGATAGACCAGCC
* * * *
66849456 AGTGTAAGATATGTCTAGGACATGCATCGGCTTCGAGATATACCAGCCAGTGTAAGACATGTTTG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCAGTGTAAGACATGTCTG
* * * *
66849521 GGACATGCATCGGCATTGAGA-CGA-GAGCT
66 GGACATGCATCAGCATTGAGATAGACCAGCC
* * * *
66849550 AGTGTATGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACTTGTCTG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCAGTGTAAGACATGTCTG
66849615 GGACATG
66 GGACATG
66849622 GCGTCAGCTT
Statistics
Matches: 140, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
94 96 0.69
95 5 0.04
96 39 0.28
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCAGTGTAAGACATGTCTG
GGACATGCATCAGCATTGAGATAGACCAGCC
Found at i:66849701 original size:49 final size:49
Alignment explanation
Indices: 66849639--66849812 Score: 167
Period size: 49 Copynumber: 3.6 Consensus size: 49
66849629 CTTGTTGTGT
* * * *
66849639 GTCAGTGTAAGACCTGTCTAGGACATGGCAACGACAC-CGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCAATAGATGAAA
** *
66849688 G-CTAGTGTAAGACCTGTCTGGGACACAGCATCGACCTCAATATATGAAA
1 GTC-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
* * ** **
66849737 GTCAATGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGCTA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
*
66849784 GCCAGTGTAAGACCATGTCTGGGACATGG
1 GTCAGTGTAAGACC-TGTCTGGGACATGG
66849813 TGTCGGCATC
Statistics
Matches: 103, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
47 15 0.15
48 16 0.16
49 71 0.69
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCAATAGATGAAA
Found at i:66849719 original size:142 final size:145
Alignment explanation
Indices: 66849400--66849812 Score: 359
Period size: 142 Copynumber: 2.9 Consensus size: 145
66849390 GGCCACATAT
* ** * * *
66849400 TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATC-AGCCTTGAGATAT-ACCAGCCAGTGTAA
1 TGAGAGCTAGTGTAAGACATGTCTGGGACAAGCATCGA-CCTCAAGATATGA-AAGTCAATGTAA
** * * * * * * * *
66849463 GATATGTCTAGGACAT-GCATCGGCTTCGAGATATACCAGCCAGTGTAAGA-CATGTTTGGGACA
64 GACCTGTCTGGGACATGGCATCGACTT--TGATGTGCTAGCCAGTGTAAGACCATGTCTAGGACA
* * **
66849526 T-GCATCGGCATTG--AGA
127 TGGCAACGACACCGATAGA
* * * * * *
66849542 CGAGAGCTAGTGTATGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAAG-CTAGTGTAA
1 TGAGAGCTAGTGTAAGACATGTCTGGGACAAGCATCGACCTCAAGATATGA-AAGTC-AATGTAA
* * * *
66849605 GACTTGTCTGGGACATGGCGTC-AGC-TTGTTGTG-T-GTCAGTGTAAGACC-TGTCTAGGACAT
64 GACCTGTCTGGGACATGGCATCGA-CTTTGATGTGCTAGCCAGTGTAAGACCATGTCTAGGACAT
66849665 GGCAACGACACCGATAGA
128 GGCAACGACACCGATAGA
* *
66849683 TGAGAGCTAGTGTAAGACCTGTCTGGGACACAGCATCGACCTCAATATATGAAAGTCAATGTAAG
1 TGAGAGCTAGTGTAAGACATGTCTGGGACA-AGCATCGACCTCAAGATATGAAAGTCAATGTAAG
*
66849748 ACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATGTCTGGGACATGG
65 ACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATGTCTAGGACATGG
66849813 TGTCGGCATC
Statistics
Matches: 220, Mismatches: 35, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
138 21 0.10
139 9 0.04
140 3 0.01
141 31 0.14
142 114 0.52
143 15 0.07
144 1 0.00
145 13 0.06
146 13 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (145 bp):
TGAGAGCTAGTGTAAGACATGTCTGGGACAAGCATCGACCTCAAGATATGAAAGTCAATGTAAGA
CCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATGTCTAGGACATGGC
AACGACACCGATAGA
Found at i:66849812 original size:48 final size:46
Alignment explanation
Indices: 66849408--66849811 Score: 192
Period size: 48 Copynumber: 8.5 Consensus size: 46
66849398 ATTGAGAGCT
* * * *
66849408 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTT-TGATATGCAAGCC
* * * * * *
66849456 AGTGTAAGATATGTCTAGGACATGCATCGGCTTCGAGATATACCAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACTT--TGATATGCAAGCC
* * * * * *
66849504 AGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACG-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACTTTGATATGCA-AGCC
* * ** * *
66849550 AGTGTATGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GACT-TTGATATGCAAGCC
* * *** *
66849598 AGTGTAAGACTTGTCTGGGACATGGCGTC-AGC-TTG-T-TGTGTGTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGA-CTTTGATATGCAAGCC
* * * *** *
66849642 AGTGTAAGACCTGTCTAGGACATGGCAACGACACCGATAGATG-AGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACTTTGAT--ATGCA-AGCC
* * * * *
66849691 AGTGTAAGACCTGTCTGGGACACAGCATCGACCTCAAT-ATATGAAAGTC
1 AGTGTAAGACATGTCTGGGACA-TGCATCGA-CT--TTGATATGCAAGCC
* * * *
66849740 AATGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCTAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACTTTGATATGCAAGCC
66849787 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
66849812 GTGTCGGCAT
Statistics
Matches: 273, Mismatches: 61, Indels: 45
0.72 0.16 0.12
Matches are distributed among these distances:
44 28 0.10
45 3 0.01
46 35 0.13
47 22 0.08
48 113 0.41
49 68 0.25
50 2 0.01
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTTTGATATGCAAGCC
Found at i:66854295 original size:68 final size:67
Alignment explanation
Indices: 66854223--66854372 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
66854213 CATCATGTGT
* * * *
66854223 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
66854285 ATGTAG
62 ATGTAG
** * *
66854291 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
66854356 AG
66 AG
66854358 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
66854373 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:66854328 original size:64 final size:64
Alignment explanation
Indices: 66854247--66854430 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
66854237 AGACATTATG
* *
66854247 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
66854311 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
66854376 AA
63 AA
* * * *
66854378 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
66854431 CGAACTATGT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:66857194 original size:31 final size:29
Alignment explanation
Indices: 66857125--66857198 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
66857115 ACAAAATAAT
**
66857125 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
*
66857154 AACATAAGTGACTAAAATGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
66857185 AACAAAAGTGACTA
1 AACATAAGTGACTA
66857199 TTTTTGTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:66857624 original size:13 final size:13
Alignment explanation
Indices: 66857608--66857673 Score: 80
Period size: 13 Copynumber: 5.1 Consensus size: 13
66857598 TTTAAATTAA
66857608 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
66857621 ACTTCTT-AAAAGC
1 ACTT-TTCAAAAGC
* *
66857634 ACTTTTCCATAGC
1 ACTTTTCAAAAGC
*
66857647 CCTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
66857660 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
66857673 A
1 A
66857674 TTGCCAAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
12 2 0.05
13 40 0.91
14 2 0.05
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:66858094 original size:24 final size:24
Alignment explanation
Indices: 66858062--66858109 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
66858052 ACGGACTCAC
*
66858062 CTCAGCTTGTAAGAGCTTACTGTT
1 CTCAACTTGTAAGAGCTTACTGTT
*
66858086 CTCAACTTGTCAGAGCTTACTGTT
1 CTCAACTTGTAAGAGCTTACTGTT
66858110 TTAGCTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (24 bp):
CTCAACTTGTAAGAGCTTACTGTT
Found at i:66860309 original size:30 final size:30
Alignment explanation
Indices: 66860273--66860329 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
66860263 TACATGACCG
*
66860273 TGTATCACACACGGTTGAGACACACGCCCA
1 TGTATCACACACGATTGAGACACACGCCCA
*
66860303 TGTATCACACATGATTGAGACACACGC
1 TGTATCACACACGATTGAGACACACGC
66860330 TCGTGACTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (30 bp):
TGTATCACACACGATTGAGACACACGCCCA
Found at i:66861918 original size:44 final size:44
Alignment explanation
Indices: 66861863--66861948 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
66861853 TATAAAATGA
* * * *
66861863 AAGTTGTGATAATTATACATTTAAAAATAGTTATAATTTAATAC
1 AAGTTGTGATAAGTACACATTTAAAAATAATTATAAGTTAATAC
*
66861907 AAGTTTTGATAAGTACACATTTAAAAATAATTATAAGTTAAT
1 AAGTTGTGATAAGTACACATTTAAAAATAATTATAAGTTAAT
66861949 TTATCATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (44 bp):
AAGTTGTGATAAGTACACATTTAAAAATAATTATAAGTTAATAC
Found at i:66862957 original size:31 final size:29
Alignment explanation
Indices: 66862916--66862995 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
66862906 ATTTTAAAAT
* *
66862916 TATAGATAAATTATGATTTAATGTGCAATTG
1 TATATATAAATTATAATTT--TGTGCAATTG
* * *
66862947 TATTTATAAATTTTAATTTTGTGCAATTT
1 TATATATAAATTATAATTTTGTGCAATTG
*
66862976 TATATATGAAATTTTAATTT
1 TATATAT-AAATTATAATTT
66862996 GATTTAATTC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 15 0.36
30 12 0.29
31 15 0.36
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (29 bp):
TATATATAAATTATAATTTTGTGCAATTG
Found at i:66862969 original size:29 final size:30
Alignment explanation
Indices: 66862937--66862995 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
66862927 TATGATTTAA
*
66862937 TGTGCAATTGTATTTAT-AAATTTTAATTT
1 TGTGCAATTGTATATATGAAATTTTAATTT
*
66862966 TGTGCAATTTTATATATGAAATTTTAATTT
1 TGTGCAATTGTATATATGAAATTTTAATTT
66862996 GATTTAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.54
Consensus pattern (30 bp):
TGTGCAATTGTATATATGAAATTTTAATTT
Found at i:66869114 original size:40 final size:41
Alignment explanation
Indices: 66869020--66869240 Score: 212
Period size: 40 Copynumber: 5.6 Consensus size: 41
66869010 TATTCGAATG
* *
66869020 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCTA-GTGACT
* * * *
66869061 ATAACCAGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCTAG-TGACT
* * *
66869101 ATATCCGGGCTAAGA-CCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCTAGTGACT
*
66869141 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTC-GTGCTAGTGACT
* * *
66869181 ATATCCGGGCTAAGA-CCCGAAGGCCTT-GTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCTAGTGA-CT
66869220 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
66869241 ATTACTTGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 15 0.10
40 89 0.60
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCTAGTGACT
Found at i:66869188 original size:80 final size:81
Alignment explanation
Indices: 66869020--66869204 Score: 234
Period size: 80 Copynumber: 2.3 Consensus size: 81
66869010 TATTCGAATG
* * *
66869020 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
*
66869085 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* * * *
66869101 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGAT-CCGAAGG
*
66869164 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
66869181 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
66869205 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
79 5 0.05
80 55 0.60
81 31 0.34
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:66880912 original size:26 final size:26
Alignment explanation
Indices: 66880876--66880957 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
66880866 TGAAATTCCA
66880876 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
66880902 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
66880928 ATCATGGGACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66880954 ATCA
1 ATCA
66880958 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:66882999 original size:15 final size:16
Alignment explanation
Indices: 66882972--66883001 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
66882962 AAAAATAAAA
66882972 ATAAATATAATTAATG
1 ATAAATATAATTAATG
66882988 ATAAAT-TAATTAAT
1 ATAAATATAATTAAT
66883002 TATTAATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
ATAAATATAATTAATG
Found at i:66885009 original size:25 final size:25
Alignment explanation
Indices: 66884952--66885017 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 25
66884942 TAAATGAGAT
* *
66884952 ATATATTTTTTGATAATTTTTTAAA
1 ATATATTTTTTGATAATATTTAAAA
*
66884977 ATA-A-TTTTT-ATGATATTTAAAA
1 ATATATTTTTTGATAATATTTAAAA
66884999 GATATATTTTTCTGATAAT
1 -ATATATTTTT-TGATAAT
66885018 TATTATATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
22 10 0.31
23 8 0.25
24 2 0.06
25 7 0.22
26 1 0.03
27 4 0.12
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.55
Consensus pattern (25 bp):
ATATATTTTTTGATAATATTTAAAA
Found at i:66889200 original size:26 final size:26
Alignment explanation
Indices: 66889170--66889221 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
66889160 TGAAAAGCCT
66889170 TCGAAATTCACAGGAAAGAATTTTAA
1 TCGAAATTCACAGGAAAGAATTTTAA
66889196 TCGAAATTCACAGGAAAGAATTTTAA
1 TCGAAATTCACAGGAAAGAATTTTAA
66889222 AACATGGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (26 bp):
TCGAAATTCACAGGAAAGAATTTTAA
Found at i:66901358 original size:15 final size:15
Alignment explanation
Indices: 66901338--66901369 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
66901328 ATTAACCTAA
66901338 ACCCATTTTAGGCTC
1 ACCCATTTTAGGCTC
*
66901353 ACCCATTTTATGCTC
1 ACCCATTTTAGGCTC
66901368 AC
1 AC
66901370 ATGAGTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.34, G:0.09, T:0.34
Consensus pattern (15 bp):
ACCCATTTTAGGCTC
Found at i:66901657 original size:60 final size:59
Alignment explanation
Indices: 66901564--66901750 Score: 187
Period size: 59 Copynumber: 3.2 Consensus size: 59
66901554 CATTTGACAA
*
66901564 GTACCAAATCGAA-CAATAAAAAGATTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAG
1 GTACCAAATTGAACCAA-AAAAAGATTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAG
** ** * * * *
66901623 GTACCAAATTGAACCTCCAAAAAGATTAAATACCAACTTAAGAAAAAGTGTCAAGTTTGG
1 GTACCAAATTGAACC-AAAAAAAGATTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAG
* * * * * * * * *
66901683 GTATCAATTTGGACCAAAAAAAGTTTAGGTACCAAACTAGAAAAAAGCGTCAAGTTCAT
1 GTACCAAATTGAACCAAAAAAAGATTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAG
66901742 GTACCAAAT
1 GTACCAAAT
66901751 GTTATATTAA
Statistics
Matches: 99, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
59 50 0.51
60 49 0.49
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (59 bp):
GTACCAAATTGAACCAAAAAAAGATTAGGTACCAAATTAGGAAAAAGAGTCAAGTTTAG
Found at i:66910957 original size:46 final size:46
Alignment explanation
Indices: 66910904--66911076 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
66910894 TGGTTGAGCA
66910904 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
66910950 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66910995 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66911043 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66911077 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66911060 original size:93 final size:93
Alignment explanation
Indices: 66910901--66911071 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
66910891 GGATGGTTGA
* * *
66910901 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66910966 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
66910994 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66911059 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66911072 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:66913945 original size:23 final size:23
Alignment explanation
Indices: 66913913--66913972 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
66913903 GGTAATGCCT
66913913 CACACGCCCGTGTGGAGGCAAAG
1 CACACGCCCGTGTGGAGGCAAAG
*
66913936 CACACACCCGTGTGGAGGCAAAG
1 CACACGCCCGTGTGGAGGCAAAG
66913959 CACACGCCCGTGTG
1 CACACGCCCGTGTG
66913973 CTTAGGGACA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.25, C:0.33, G:0.32, T:0.10
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAAAG
Found at i:66924254 original size:93 final size:92
Alignment explanation
Indices: 66924138--66924305 Score: 221
Period size: 91 Copynumber: 1.8 Consensus size: 92
66924128 TATCTAGGCT
* * * * *
66924138 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCCTGAGGCTAATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCAT-T-CATCATGAGGCCAATGCATGTCCCAAAC
66924203 ATGTCTTACACTACCCTCGTCTCAATGTC
64 ATGTCTTACACTACCCTCGTCTCAATGTC
* * * * *
66924232 GATG-CATGTCCCAGACATGTCTTGCACTAGCATTCATGATGTGGCCGATGCATGTCCCAAACAT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCATTCATCATGAGGCCAATGCATGTCCCAAACAT
66924296 GTCTTACACT
66 GTCTTACACT
66924306 GACTCACATA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
91 33 0.52
92 1 0.02
93 26 0.41
94 4 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCATTCATCATGAGGCCAATGCATGTCCCAAACAT
GTCTTACACTACCCTCGTCTCAATGTC
Found at i:66936859 original size:27 final size:27
Alignment explanation
Indices: 66936826--66936886 Score: 113
Period size: 27 Copynumber: 2.2 Consensus size: 27
66936816 TGGCAGAGGG
66936826 TGGTTGACCAATTCAATTTGGTAGTCC
1 TGGTTGACCAATTCAATTTGGTAGTCC
66936853 TGGTTGACCAATTCAATTTGGTAGTCC
1 TGGTTGACCAATTCAATTTGGTAGTCC
66936880 TAGGTTG
1 T-GGTTG
66936887 TCTCCCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 28 0.85
28 5 0.15
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (27 bp):
TGGTTGACCAATTCAATTTGGTAGTCC
Found at i:66947021 original size:39 final size:40
Alignment explanation
Indices: 66946921--66947111 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
66946911 TCGAATGATG
* * *
66946921 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
66946961 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
66947001 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
66947039 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
66947080 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
66947112 CGTTATATCC
Statistics
Matches: 123, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 11 0.09
39 43 0.35
40 60 0.49
41 9 0.07
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66947095 original size:40 final size:39
Alignment explanation
Indices: 66946974--66947112 Score: 147
Period size: 39 Copynumber: 3.5 Consensus size: 39
66946964 GGACTAGGAT
* * *
66946974 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTCACTAAA-CCGGGCTTAGTC
* * * *
66947013 CCGAAGGCATTTGTGCAAGTTACTAACCCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTT-AGTC
*
66947052 CCGAAGGCATTCGTGCGAGTCACTATAACCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCGGGCTTAGTC
* *
66947092 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
66947113 GTTATATCCG
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 7 0.08
39 46 0.55
40 28 0.33
41 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCGGGCTTAGTC
Found at i:66947136 original size:78 final size:78
Alignment explanation
Indices: 66946921--66947112 Score: 183
Period size: 78 Copynumber: 2.4 Consensus size: 78
66946911 TCGAATGATG
* * * ** *
66946921 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTA-ACCCGGGTTA-AATCCCGAAGGCAT
*
66946984 TCGTGCGAGTTAATAAA
62 TCGTGCGAGTCAATAAA
* * *
66947001 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAACCCGGGTTAAGTCCCGAAGGCATTCGT
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAACCCGGGTTAAATCCCGAAGGCATTCGT
*
66947066 GCGAGTCACTATAA
66 GCGAGTCAATA-AA
** *
66947080 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTC
66947113 GTTATATCCG
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 38 0.40
79 38 0.40
80 18 0.19
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAACCCGGGTTAAATCCCGAAGGCATTCGT
GCGAGTCAATAAA
Found at i:66955023 original size:40 final size:39
Alignment explanation
Indices: 66954979--66955090 Score: 120
Period size: 38 Copynumber: 2.8 Consensus size: 39
66954969 AAGTGACTAT
*
66954979 ATCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAA
1 ATCCGGGCTA-GATCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
66955019 ATCCGGGCTA-AGCCGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
* *
66955057 ACCCGGGTTA-AGTCCCGAAGGCATTCGTGCGAGT
1 ATCCGGGCTAGA-T-CCGAAGGCATTCGTGCGAGT
66955091 CACTATAACC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
38 33 0.55
40 27 0.45
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:66955103 original size:40 final size:40
Alignment explanation
Indices: 66954941--66955131 Score: 167
Period size: 40 Copynumber: 4.8 Consensus size: 40
66954931 CGAATGATGT
* * * *
66954941 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * * *
66954981 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
66955021 CCGGGCTAAG--CCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
66955059 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
66955099 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
66955132 GTTATATCCG
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
38 33 0.27
40 82 0.66
41 9 0.07
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:66955103 original size:78 final size:80
Alignment explanation
Indices: 66954940--66955123 Score: 207
Period size: 78 Copynumber: 2.3 Consensus size: 80
66954930 TCGAATGATG
* * *
66954940 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
66955004 CGTGCGAGTTAATAAA
65 CGTGCGAGTCAATAAA
* **
66955020 TCCGGGCTAAG-CCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
66955082 CGTGCGAGTCACTATAA
65 CGTGCGAGTCAATA-AA
**
66955099 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
66955124 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 55 0.62
79 9 0.10
80 24 0.27
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTCAATAAA
Found at i:66960666 original size:18 final size:20
Alignment explanation
Indices: 66960626--66960669 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
66960616 GTGGCCGGAG
66960626 CTCCCCCTCCCCTCTCTTCT
1 CTCCCCCTCCCCTCTCTTCT
*
66960646 CTCCCCGCT-CCCTCTTTTCT
1 CTCCCC-CTCCCCTCTCTTCT
66960666 CTCC
1 CTCC
66960670 TTCCCCTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.00, C:0.61, G:0.02, T:0.36
Consensus pattern (20 bp):
CTCCCCCTCCCCTCTCTTCT
Found at i:66961259 original size:13 final size:14
Alignment explanation
Indices: 66961235--66961265 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
66961225 ATTATTATCA
66961235 ATATTGATATATGT
1 ATATTGATATATGT
66961249 ATATT-ATATATGT
1 ATATTGATATATGT
66961262 ATAT
1 ATAT
66961266 ATTCATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (14 bp):
ATATTGATATATGT
Found at i:66974087 original size:40 final size:40
Alignment explanation
Indices: 66974002--66974152 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
66973992 AATTGAATGA
* * *
66974002 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
66974042 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
66974083 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
66974122 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
66974153 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:66974166 original size:40 final size:40
Alignment explanation
Indices: 66974039--66974168 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
66974029 ATGCTGGAAA
* * * *
66974039 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
66974079 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
66974119 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
66974159 TTATATCCGG
1 TTATATCCGG
66974169 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:66979114 original size:43 final size:43
Alignment explanation
Indices: 66979033--66979117 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
66979023 AAATCATACA
**
66979033 ATGCCAATGTCCCAGACGTGGTCTTACATGTAGCCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
*
66979076 ATGCCACTGTCCCAGACAG-GGTCTTAC-TCGTAAACACATATC
1 ATGCCAATGTCCCAGAC-GTGGTCTTACAT-GTAAACACATATC
66979118 AAAATCACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 35 0.95
44 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAAACACATATCG
Found at i:66988380 original size:40 final size:40
Alignment explanation
Indices: 66988252--66988382 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
66988242 TATGCTGGAA
* * * *
66988252 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
66988292 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
66988332 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
66988372 ATTATATCCGG
1 ATTATATCCGG
66988383 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:66996393 original size:40 final size:40
Alignment explanation
Indices: 66996265--66996395 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
66996255 TATGCTGGAA
* * * *
66996265 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
66996305 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
66996345 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
66996385 ATTATATCCGG
1 ATTATATCCGG
66996396 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:67002663 original size:17 final size:20
Alignment explanation
Indices: 67002621--67002660 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
67002611 CATAGAGAGG
67002621 AATTGAAGTGGATAGAGTAAA
1 AATTGAAGTGGATAGAG-AAA
67002642 AATTGAAGT-GATAG-GAAA
1 AATTGAAGTGGATAGAGAAA
67002660 A
1 A
67002661 TTGCCACCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 1 0.05
20 5 0.26
21 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.23
Consensus pattern (20 bp):
AATTGAAGTGGATAGAGAAA
Found at i:67002731 original size:23 final size:22
Alignment explanation
Indices: 67002705--67002749 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
67002695 ATTTTTTAGG
*
67002705 TCATTTAGG-TTTTTATAGAAGAT
1 TCATTAAGGATTTTT-T-GAAGAT
67002728 TCATTAAGGATTTTTTGAAGAT
1 TCATTAAGGATTTTTTGAAGAT
67002750 ATCTAAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 9 0.45
24 5 0.25
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (22 bp):
TCATTAAGGATTTTTTGAAGAT
Found at i:67008661 original size:40 final size:40
Alignment explanation
Indices: 67008616--67008730 Score: 130
Period size: 40 Copynumber: 2.9 Consensus size: 40
67008606 TTAATGTATG
67008616 AATGCACAT-TCGTGCCCCTATTTATACTTCGGTATCCC-TA
1 AATGCACATAT-GTGCCCCTATTTATACTTCGGTA-CCCTTA
* * *
67008656 AATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCTTG
1 AATGCACATATGTGCCCCTATTTATACTTCGGTACCCTTA
*
67008696 AATGCACATATGT-TCCCT-TGTTAGTACTTCGGTAC
1 AATGCACATATGTGCCCCTAT-TTA-TACTTCGGTAC
67008731 TCCTGAAGGC
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 9 0.14
40 55 0.83
41 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.36
Consensus pattern (40 bp):
AATGCACATATGTGCCCCTATTTATACTTCGGTACCCTTA
Found at i:67011513 original size:46 final size:46
Alignment explanation
Indices: 67011464--67011634 Score: 236
Period size: 46 Copynumber: 3.7 Consensus size: 46
67011454 GGTTGAGCAT
*
67011464 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
* * *
67011510 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
* * * * *
67011556 CCGAGCTCGTTGAGTTGAGTCTGAGTTCATTTATTGATGCGAACT-C
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAATGC
*
67011602 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67011635 GGGGAGGGTT
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
46 111 0.99
47 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGC
Found at i:67011896 original size:19 final size:20
Alignment explanation
Indices: 67011859--67011896 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67011849 ATAAGGTGGT
67011859 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67011879 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67011897 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Done.