Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 236 of 427
Found at i:67016781 original size:19 final size:19
Alignment explanation
Indices: 67016757--67016793 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
67016747 AAATGTATAG
67016757 TACGCCTAGTTTGTCTAAA
1 TACGCCTAGTTTGTCTAAA
67016776 TACGCCTAGTTTGTCTAA
1 TACGCCTAGTTTGTCTAA
67016794 GCACTGTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (19 bp):
TACGCCTAGTTTGTCTAAA
Found at i:67020044 original size:68 final size:66
Alignment explanation
Indices: 67019972--67020143 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
67019962 CATCATGTGT
* * * *
67019972 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
67020035 TGTAG
62 TGTAG
** * *
67020040 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
67020105 AG
65 AG
* * * *
67020107 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
67020144 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:67020077 original size:64 final size:64
Alignment explanation
Indices: 67019996--67020179 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
67019986 AGACATTATG
* * *
67019996 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
67020060 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67020125 AA
63 AA
* * *
67020127 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67020180 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67024464 original size:68 final size:66
Alignment explanation
Indices: 67024392--67024563 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
67024382 CATCATGTGT
* * * *
67024392 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
67024455 TGTAG
62 TGTAG
** * *
67024460 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
67024525 AG
65 AG
* * * *
67024527 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
67024564 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:67024497 original size:64 final size:64
Alignment explanation
Indices: 67024416--67024599 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
67024406 AGACATTATG
* * *
67024416 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
67024480 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67024545 AA
63 AA
* * *
67024547 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
67024600 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67028399 original size:11 final size:11
Alignment explanation
Indices: 67028383--67028411 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
67028373 TAGATCCATA
67028383 ATCACAAGGTC
1 ATCACAAGGTC
67028394 ATCACAAGGTC
1 ATCACAAGGTC
67028405 ATCACAA
1 ATCACAA
67028412 AATCATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.41, C:0.28, G:0.14, T:0.17
Consensus pattern (11 bp):
ATCACAAGGTC
Found at i:67028698 original size:48 final size:48
Alignment explanation
Indices: 67028626--67028799 Score: 156
Period size: 48 Copynumber: 3.6 Consensus size: 48
67028616 GTAAATCGAC
* * * *
67028626 GATGCCATGTCCCAAACATGGTCTTACATTGGCTCACATGTCGAGGCT
1 GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATCGAGGCT
* * * * * * *
67028674 GATGTCATGTCCTAGACATGGTCTTACACTAGCTCTCGTTTCGATGCC
1 GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATCGAGGCT
* * * * *
67028722 GATGTCATGT-TTCAGATATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTCCT-AAACATGGTCTTACACTGGCTCTCAT-ATCGAGGCT
67028770 GATGCCATGTTCC-AAACATGGTCTTACACT
1 GATGCCATG-TCCTAAACATGGTCTTACACT
67028800 AGCACACATA
Statistics
Matches: 100, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
47 1 0.01
48 97 0.97
49 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (48 bp):
GATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATATCGAGGCT
Found at i:67029298 original size:70 final size:70
Alignment explanation
Indices: 67029197--67029568 Score: 595
Period size: 70 Copynumber: 5.3 Consensus size: 70
67029187 TTCCTTGATC
* * * *
67029197 TATAACAACA-CATTTTAATTAGCTAAACACCATGAATTTGTCCTAATTTGGACAACCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
*
67029261 TACAA
66 TACAG
*
67029266 TAGT-ACAGCAGCATATTAGTTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAAT
1 TA-TAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAAT
67029330 TTACAG
65 TTACAG
*
67029336 TATAACAGCAGAATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
67029401 TACAG
66 TACAG
* * * *
67029406 TATAACAGCAGTATATTAATTAGCTAAGCACCATGAATTTGTCATAATTTTGACAGACAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
*
67029471 TATAG
66 TACAG
* *
67029476 TATAACAGCAGCATATTCATTAGCTAAGCACCATGAATTTGTCCAAATTTGGACAGCCAATAATT
1 TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
67029541 TACAG
66 TACAG
67029546 TATAACAGCAGCATATTAATTAG
1 TATAACAGCAGCATATTAATTAG
67029569 TAATAAACTA
Statistics
Matches: 279, Mismatches: 21, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
69 8 0.03
70 271 0.97
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (70 bp):
TATAACAGCAGCATATTAATTAGCTAAGCACCATGAATTTGTCCTAATTTGGACAGCCAATAATT
TACAG
Found at i:67031426 original size:16 final size:17
Alignment explanation
Indices: 67031405--67031439 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
67031395 ATTGTTCAAA
*
67031405 TTATTTAAGA-ACAATT
1 TTATTTAAAACACAATT
67031421 TTATTTAAAACACAATT
1 TTATTTAAAACACAATT
67031438 TT
1 TT
67031440 GAAGCCCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (17 bp):
TTATTTAAAACACAATT
Found at i:67031801 original size:38 final size:38
Alignment explanation
Indices: 67031759--67031834 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
67031749 GCAAAGTAAG
*
67031759 TACTAAAATGAAAGTCCAAATCCAAAAGAAAACTAGCC
1 TACTAAAACGAAAGTCCAAATCCAAAAGAAAACTAGCC
67031797 TACTAAAACGAAAGTCCAAATCCAAAAGAAAACTAGCC
1 TACTAAAACGAAAGTCCAAATCCAAAAGAAAACTAGCC
67031835 AAAAAGTTCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.53, C:0.22, G:0.11, T:0.14
Consensus pattern (38 bp):
TACTAAAACGAAAGTCCAAATCCAAAAGAAAACTAGCC
Found at i:67041428 original size:40 final size:40
Alignment explanation
Indices: 67041301--67041430 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
67041291 ATGCTGGAAA
* * *
67041301 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
67041341 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
67041381 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
67041421 TTATATCCGG
1 TTATATCCGG
67041431 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:67047372 original size:40 final size:39
Alignment explanation
Indices: 67047261--67047411 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
67047251 TATAACATGT
* ** *
67047261 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
67047301 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
67047341 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
67047381 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
67047412 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:67047395 original size:80 final size:79
Alignment explanation
Indices: 67047261--67047411 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67047251 TATAACATGT
*
67047261 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
67047326 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67047341 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
67047404 CCGGATAT
64 CCGGATAT
67047412 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:67055305 original size:40 final size:39
Alignment explanation
Indices: 67055194--67055344 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
67055184 TATAACATGT
* ** *
67055194 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
67055234 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
67055274 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
67055314 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
67055345 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:67055328 original size:80 final size:79
Alignment explanation
Indices: 67055194--67055344 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
67055184 TATAACATGT
*
67055194 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
67055259 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
67055274 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
67055337 CCGGATAT
64 CCGGATAT
67055345 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:67059129 original size:20 final size:20
Alignment explanation
Indices: 67059104--67059141 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
67059094 TGTTAGTATG
67059104 TGTAACAGCCCGATTTAGAC
1 TGTAACAGCCCGATTTAGAC
*
67059124 TGTAACAGCCTGATTTAG
1 TGTAACAGCCCGATTTAG
67059142 GGCCAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (20 bp):
TGTAACAGCCCGATTTAGAC
Found at i:67063261 original size:40 final size:40
Alignment explanation
Indices: 67063216--67063381 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
67063206 CGGAATATAA
67063216 CCGGATATAATCAC-ATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTA-GCACAAATGCCTTCGGGTCTTAGC
* * * *
67063256 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
67063296 CCGGATATAGCCACTAGCAC-ATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
67063335 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
67063374 CCGGATAT
1 CCGGATAT
67063382 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 44 0.42
40 61 0.58
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67065433 original size:25 final size:25
Alignment explanation
Indices: 67065400--67065449 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
67065390 CTTTGTGATG
67065400 TTAGATGATGAATTATAAAAGATAT
1 TTAGATGATGAATTATAAAAGATAT
*
67065425 TTAGATGATGAATTATGAAAGATAT
1 TTAGATGATGAATTATAAAAGATAT
67065450 GTTTTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.18, T:0.36
Consensus pattern (25 bp):
TTAGATGATGAATTATAAAAGATAT
Found at i:67066128 original size:43 final size:43
Alignment explanation
Indices: 67066056--67066697 Score: 849
Period size: 43 Copynumber: 15.0 Consensus size: 43
67066046 TAGGATTTTT
*
67066056 GATATGTGATTACGCGTAAGACCTA-GTCTGGGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACC-ACGTCTGGGACAGTGGCATC
** **
67066099 GATACATGATTACGTGTAAGACCACGTCTGGGACTTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCATC
67066142 GATATGTGATTACGTGTAAGACCACGTCTGGGAC-GTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCATC
*
67066185 GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCATC
* *
67066228 GATATGTGATTACATGTAAGACC-CTGTCTGGGATAGTGGCATC
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCATC
* * *
67066271 GATATGTGATTACCTGTAAGACCACATTTGGGAC-GTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCATC
*
67066314 GATATGTGATTACGTGTAAGACC-CTATCTGGGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCATC
*
67066357 GATATGTGATTACATGTAAGACCACGTCTGGGAC-GTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCATC
* *
67066400 AATATGTGATTACGAGTAAGACC-CTGTCTGGGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCATC
67066443 GATATGTGATTACGTGTAAGACCACGTCTGGGAC-GTTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAG-TGGCATC
* ** *
67066486 GATATGTGATTATGTGTAAGACCTTGTCTGGGACAGTGGCATT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCATC
* *
67066529 GATATGTGATTACGTGTAAGACCACGTCTGGGACAATGGAATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCATC
* *
67066572 GATATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGACATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAGT-GGCATC
* *
67066615 -ATATTTGATT-TGTGTAAGACC-CTGTCTGGGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCAC-GTCTGGGACAGTGGCATC
* * * *
67066656 GATATGTGATTACATGTAAGACCACATCTTGGACATTGGCAT
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCAT
67066698 TATACGATAT
Statistics
Matches: 530, Mismatches: 48, Indels: 42
0.85 0.08 0.07
Matches are distributed among these distances:
41 25 0.05
42 27 0.05
43 471 0.89
44 7 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:67066895 original size:43 final size:43
Alignment explanation
Indices: 67066845--67067099 Score: 338
Period size: 43 Copynumber: 6.0 Consensus size: 43
67066835 GTAAGTATTT
*
67066845 GATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGAATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATC
* * *
67066888 GATATGTGATTACGTGTAAGACCCTGTCTGGGACAGTGGCATT
1 GATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATC
* *
67066931 GATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGAATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATC
* *
67066974 GATATGTGATTACGTGTAAGACCATGTCAGGGACA-TCGGCATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACAGT-GGCATC
* * * *
67067017 G-TATTTGATT-CGTGTAAGACCCTGTCTGGGACAATGGCATC
1 GATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATC
* *
67067058 GATATGTTATTACATGTAAGACCATGTCTTGGAC-GTTGGCAT
1 GATATGTGATTACATGTAAGACCATGTCTGGGACAG-TGGCAT
67067100 TGTACGATAT
Statistics
Matches: 185, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
41 28 0.15
42 17 0.09
43 140 0.76
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATC
Found at i:67067073 original size:127 final size:129
Alignment explanation
Indices: 67066845--67067091 Score: 383
Period size: 127 Copynumber: 1.9 Consensus size: 129
67066835 GTAAGTATTT
*
67066845 GATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGAATCGATATGTGATTACGTGTAAGAC
1 GATATGTGATTACATGTAAGACCATGTCAGGGACAGTGGAATCGATATGTGATTACGTGTAAGAC
* *
67066910 CCTGTCTGGGACAGTGGCATTGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGAATC
66 CCTGTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGAATC
* * *
67066974 GATATGTGATTACGTGTAAGACCATGTCAGGGACA-TCGGCATCG-TATTTGATT-CGTGTAAGA
1 GATATGTGATTACATGTAAGACCATGTCAGGGACAGT-GGAATCGATATGTGATTACGTGTAAGA
* * *
67067036 CCCTGTCTGGGACAATGGCATCGATATGTTATTACATGTAAGACCATGTCTTGGAC
65 CCCTGTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
67067092 GTTGGCATTG
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
127 60 0.56
128 9 0.08
129 39 0.36
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (129 bp):
GATATGTGATTACATGTAAGACCATGTCAGGGACAGTGGAATCGATATGTGATTACGTGTAAGAC
CCTGTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGAATC
Found at i:67067187 original size:402 final size:405
Alignment explanation
Indices: 67066443--67067259 Score: 1390
Period size: 402 Copynumber: 2.0 Consensus size: 405
67066433 CAGTGGCATC
* * *
67066443 GATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTATGTGTAAGAC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGAATCGATATGTGATTACGTGTAAGAC
* *
67066508 CTTGTCTGGGACAGTGGCATTGATATGTGATTACGTGTAAGACCACGTCTGGGACAATGGAATCG
66 CCTGTCTGGGACAGTGGCATTGATATGTGATTACATGTAAGACCACGTCTGGGACAATGGAATCG
* *
67066573 ATATGTGATTACGTGTAAGACCATGTCTGGGACATCGACATCATATTTGATTTGTGTAAGACCCT
131 ATATGTGATTACGTGTAAGACCATGTCAGGGACATCGACATCATATTTGATTCGTGTAAGACCCT
*
67066638 GTCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACCACATCTTGGACATTGGCATTATAC
196 GTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACATCTTGGACATTGGCATTATAC
67066703 GATATGTGTGATTATCCCAGTATCCTATTCAATTACGAATGGTTCAACGGGCAATAATAAGTTAT
261 GATATGTGTGATTATCCCAGTATCCTATTCAATTACGAATGGTTCAACGGGCAATAATAAGTTAT
* *
67066768 TATCGAATGTGTAATCAAGCTAAAGTGATCAGGTATGTGATAGCTAAATTGCCTATTTGAAAATA
326 GATCGAATGTGTAATCAAGCTAAAGTGATCAAGTATGTGATAGCTAAATTGCCTATTTGAAAATA
67066833 AGGTAAG-T-A-TTT
391 AGGTAAGTTGACTTT
*
67066845 GATATGTGATTACATGTAAGACCATGTCTGGGACAG-TGGAATCGATATGTGATTACGTGTAAGA
1 GATATGTGATTACATGTAAGACCACGTCTGGGAC-GTTGGAATCGATATGTGATTACGTGTAAGA
*
67066909 CCCTGTCTGGGACAGTGGCATTGATATGTGATTACATGTAAGACCACGTCTGGGACAGTGGAATC
65 CCCTGTCTGGGACAGTGGCATTGATATGTGATTACATGTAAGACCACGTCTGGGACAATGGAATC
* *
67066974 GATATGTGATTACGTGTAAGACCATGTCAGGGACATCGGCATCGTATTTGATTCGTGTAAGACCC
130 GATATGTGATTACGTGTAAGACCATGTCAGGGACATCGACATCATATTTGATTCGTGTAAGACCC
* ** * *
67067039 TGTCTGGGACAATGGCATCGATATGTTATTACATGTAAGACCATGTCTTGGACGTTGGCATTGTA
195 TGTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACATCTTGGACATTGGCATTATA
* * *
67067104 CGATATGTGTGATTATCCGAGTATCCTATTCAATTCCGAATGGTTCAACGGGCAATGATAAGTTA
260 CGATATGTGTGATTATCCCAGTATCCTATTCAATTACGAATGGTTCAACGGGCAATAATAAGTTA
*
67067169 TGATCGAATGTGTAATCAAGCTAAAGTGGTCAAGTATGTGATAGCTAAATTGCCTATTTGAAAAT
325 TGATCGAATGTGTAATCAAGCTAAAGTGATCAAGTATGTGATAGCTAAATTGCCTATTTGAAAAT
67067234 AAGGTAAGTTGACTTT
390 AAGGTAAGTTGACTTT
67067250 GATATGTGAT
1 GATATGTGAT
67067260 GCAAATTATA
Statistics
Matches: 388, Mismatches: 23, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
402 372 0.96
403 2 0.01
404 1 0.00
405 13 0.03
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (405 bp):
GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGAATCGATATGTGATTACGTGTAAGAC
CCTGTCTGGGACAGTGGCATTGATATGTGATTACATGTAAGACCACGTCTGGGACAATGGAATCG
ATATGTGATTACGTGTAAGACCATGTCAGGGACATCGACATCATATTTGATTCGTGTAAGACCCT
GTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACATCTTGGACATTGGCATTATAC
GATATGTGTGATTATCCCAGTATCCTATTCAATTACGAATGGTTCAACGGGCAATAATAAGTTAT
GATCGAATGTGTAATCAAGCTAAAGTGATCAAGTATGTGATAGCTAAATTGCCTATTTGAAAATA
AGGTAAGTTGACTTT
Found at i:67067275 original size:16 final size:16
Alignment explanation
Indices: 67067251--67067281 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67067241 GTTGACTTTG
*
67067251 ATATGTGATGCAAATT
1 ATATATGATGCAAATT
67067267 ATATATGATGCAAAT
1 ATATATGATGCAAAT
67067282 GAAAATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (16 bp):
ATATATGATGCAAATT
Found at i:67070529 original size:29 final size:28
Alignment explanation
Indices: 67070487--67070577 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 28
67070477 ACATGGCTTG
* *
67070487 GAAT-TGATTCGGGCCGGATGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
67070515 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
* *
67070544 GAATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGTGATTTGGGCC-AATGGGCCATAT
*
67070572 GCATGT
1 GAATGT
67070578 ATGTAGACTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
28 27 0.49
29 28 0.51
ACGTcount: A:0.23, C:0.15, G:0.34, T:0.27
Consensus pattern (28 bp):
GAATGTGATTTGGGCCAATGGGCCATAT
Found at i:67070565 original size:28 final size:29
Alignment explanation
Indices: 67070504--67070572 Score: 113
Period size: 28 Copynumber: 2.4 Consensus size: 29
67070494 TTCGGGCCGG
*
67070504 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
67070533 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
67070561 GTGGGCCATATG
1 ATGGGCCATATG
67070573 CATGTATGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 20 0.53
29 18 0.47
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:67071268 original size:11 final size:11
Alignment explanation
Indices: 67071252--67071277 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67071242 ATTGCATGTA
67071252 TGATATTATTG
1 TGATATTATTG
67071263 TGATATTATTG
1 TGATATTATTG
67071274 TGAT
1 TGAT
67071278 GTAGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:67072228 original size:55 final size:54
Alignment explanation
Indices: 67072141--67072395 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
67072131 ATTAGGGTTT
* *
67072141 AAGGATACCATGTAAGACCATGCCTAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * *
67072196 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
67072251 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
67072304 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAATTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
67072353 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
67072396 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
49 38 0.22
52 7 0.04
53 39 0.23
54 12 0.07
55 71 0.42
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:67077824 original size:2 final size:2
Alignment explanation
Indices: 67077817--67077841 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
67077807 GAGACTAGTC
67077817 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
67077842 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67077931 original size:15 final size:16
Alignment explanation
Indices: 67077895--67077924 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67077885 ACATATCATT
67077895 TATTTCATTATATCAA
1 TATTTCATTATATCAA
67077911 TATTTCA-TATATCA
1 TATTTCATTATATCA
67077925 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:67079064 original size:67 final size:64
Alignment explanation
Indices: 67078926--67079109 Score: 194
Period size: 64 Copynumber: 2.8 Consensus size: 64
67078916 ATATAGTTCG
* * * * * * *
67078926 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAATCACCCATGCGACCTAGCTACA-TATATCCCGT
67078988 A
64 A
* * * *
67078989 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAATCACCCATGCGACCTAGCTACATATATCCCG
67079054 TA
63 TA
*
67079056 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAATCACCCATGCGACCTAGCTACAT
67079110 CATAATGTCT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 29 0.29
66 22 0.22
67 29 0.29
68 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAATCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:67079878 original size:30 final size:30
Alignment explanation
Indices: 67079844--67079904 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67079834 TCCTTAACTC
67079844 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67079874 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67079904 A
1 A
67079905 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67085506 original size:21 final size:21
Alignment explanation
Indices: 67085481--67085539 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 21
67085471 CAAAATATCA
**
67085481 AAAAAAGTGAAAAAAAAAGTT
1 AAAAAAGTGAAAAAAAAAGCG
* *
67085502 CAAAAAGCG-AAAAAAAAGCG
1 AAAAAAGTGAAAAAAAAAGCG
67085522 AAAAAAGTGAAAAAAAAA
1 AAAAAAGTGAAAAAAAAA
67085540 AAGCAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.73, C:0.05, G:0.15, T:0.07
Consensus pattern (21 bp):
AAAAAAGTGAAAAAAAAAGCG
Found at i:67085541 original size:14 final size:14
Alignment explanation
Indices: 67085522--67085570 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
67085512 AAAAAAAGCG
67085522 AAAAAAGTGAAAAA
1 AAAAAAGTGAAAAA
**
67085536 AAAAAAGCAAAAAAA
1 AAAAAAG-TGAAAAA
67085551 AAGAAAAGGTGAAAAA
1 AA-AAAA-GTGAAAAA
67085567 AAAA
1 AAAA
67085571 TTCAATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
14 7 0.25
15 9 0.32
16 11 0.39
17 1 0.04
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.04
Consensus pattern (14 bp):
AAAAAAGTGAAAAA
Found at i:67085547 original size:21 final size:21
Alignment explanation
Indices: 67085482--67085548 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
67085472 AAAATATCAA
**
67085482 AAAAAGTGAAAAAAAAAGTTC
1 AAAAAGTGAAAAAAAAAGAGC
* * *
67085503 AAAAAGCG-AAAAAAAAGCGA
1 AAAAAGTGAAAAAAAAAGAGC
*
67085523 AAAAAGTGAAAAAAAAAAAGC
1 AAAAAGTGAAAAAAAAAGAGC
67085544 AAAAA
1 AAAAA
67085549 AAAAGAAAAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 16 0.43
21 21 0.57
ACGTcount: A:0.73, C:0.06, G:0.15, T:0.06
Consensus pattern (21 bp):
AAAAAGTGAAAAAAAAAGAGC
Found at i:67085556 original size:23 final size:23
Alignment explanation
Indices: 67085511--67085557 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
67085501 TCAAAAAGCG
* **
67085511 AAAAAAAAGCGAAAAAAGTGAAA
1 AAAAAAAAGCAAAAAAAAAGAAA
67085534 AAAAAAAAGCAAAAAAAAAGAAA
1 AAAAAAAAGCAAAAAAAAAGAAA
67085557 A
1 A
67085558 GGTGAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.81, C:0.04, G:0.13, T:0.02
Consensus pattern (23 bp):
AAAAAAAAGCAAAAAAAAAGAAA
Found at i:67085567 original size:41 final size:40
Alignment explanation
Indices: 67085480--67085568 Score: 92
Period size: 41 Copynumber: 2.2 Consensus size: 40
67085470 TCAAAATATC
***
67085480 AAAAAAAGTGAAAAAAAAAGTTCAAAAAGCGAAAAAAAAGCG
1 AAAAAAAGTGAAAAAAAAAAAGCAAAAA--GAAAAAAAAGCG
*
67085522 -AAAAAAGTGAAAAAAAAAAAGCAAAAA-AAAAGAAAAGGTG
1 AAAAAAAGTGAAAAAAAAAAAGCAAAAAGAAAA-AAAA-GCG
67085562 AAAAAAA
1 AAAAAAA
67085569 AATTCAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
38 4 0.10
39 4 0.10
40 2 0.05
41 30 0.75
ACGTcount: A:0.74, C:0.04, G:0.16, T:0.06
Consensus pattern (40 bp):
AAAAAAAGTGAAAAAAAAAAAGCAAAAAGAAAAAAAAGCG
Found at i:67086111 original size:21 final size:21
Alignment explanation
Indices: 67086085--67086172 Score: 86
Period size: 21 Copynumber: 4.2 Consensus size: 21
67086075 AGAGGGGAGA
*
67086085 CCACAACGAGGACGTTCACCT
1 CCACAACAAGGACGTTCACCT
* ** * **
67086106 CCACAACGAGCCCGTTTACAA
1 CCACAACAAGGACGTTCACCT
* *
67086127 CCACAACAAGGATGTTTACCT
1 CCACAACAAGGACGTTCACCT
*
67086148 CCACAACAAGGTCGTTCACCT
1 CCACAACAAGGACGTTCACCT
67086169 CCAC
1 CCAC
67086173 CTCGAGACCA
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 53 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.17
Consensus pattern (21 bp):
CCACAACAAGGACGTTCACCT
Found at i:67092707 original size:48 final size:48
Alignment explanation
Indices: 67092580--67092857 Score: 425
Period size: 48 Copynumber: 5.8 Consensus size: 48
67092570 TCTCATATCG
* ** * *
67092580 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGTCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* *
67092628 ATGCCATATCCCAG--ATGGTCTTACATGGGATCTCTTATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* *
67092674 ATGTCATGTCCCAAACATGGTCTTACATGGGATCTCATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
67092722 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* * *
67092770 ATGCCATGTCCCAGATATGGTCTTACATAGGATCTCATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
*
67092818 ATGCCATGTCCCAGACATGGTTTTACATGGGATCTCATAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATAT
67092858 AACCCTAATG
Statistics
Matches: 209, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 37 0.18
48 172 0.82
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
Found at i:67096602 original size:46 final size:46
Alignment explanation
Indices: 67096552--67096724 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
67096542 TGGTTGAGCA
67096552 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67096598 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
67096643 CATCTGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67096691 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67096725 GGGGCAGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67096708 original size:93 final size:93
Alignment explanation
Indices: 67096549--67096719 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67096539 GGATGGTTGA
* *
67096549 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67096614 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
67096642 GCATCTGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67096707 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67096720 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67098834 original size:40 final size:40
Alignment explanation
Indices: 67098689--67098834 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
67098679 GCTACTCATT
* * *
67098689 CAAATGTCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67098729 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
67098769 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
67098810 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67098835 CATCATTCGA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:67102316 original size:21 final size:21
Alignment explanation
Indices: 67102270--67102318 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
67102260 GAGCTCACAG
*
67102270 GCCCGTGTGATCCAGGGACAC
1 GCCCGTGTGACCCAGGGACAC
* *
67102291 ACCCGTGTGACCCTA-GGACAT
1 GCCCGTGTGACCC-AGGGACAC
67102312 GCCCGTG
1 GCCCGTG
67102319 CTATAGAACG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.18, C:0.35, G:0.31, T:0.16
Consensus pattern (21 bp):
GCCCGTGTGACCCAGGGACAC
Found at i:67107657 original size:13 final size:13
Alignment explanation
Indices: 67107639--67107665 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67107629 ACCATAGAGA
67107639 CAAGAAAGGATAC
1 CAAGAAAGGATAC
67107652 CAAGAAAGGATAC
1 CAAGAAAGGATAC
67107665 C
1 C
67107666 GTGCTTCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.19, G:0.22, T:0.07
Consensus pattern (13 bp):
CAAGAAAGGATAC
Found at i:67115635 original size:21 final size:21
Alignment explanation
Indices: 67115606--67115646 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
67115596 TGCTGGACAG
*
67115606 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
67115627 GAGCTGGAATGAGAGTGTTT
1 GAGCCGGAATGAGAGTGTTT
67115647 GGTTGCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:67118640 original size:3 final size:3
Alignment explanation
Indices: 67118634--67118666 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
67118624 ATGATGATCG
67118634 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
67118667 AGATGCACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:67130603 original size:46 final size:46
Alignment explanation
Indices: 67130550--67130665 Score: 196
Period size: 46 Copynumber: 2.5 Consensus size: 46
67130540 TCTTGAATTT
* * *
67130550 ATAATATCTAATAATACTATCCTATTAGAAATCAAATTTCTAAAAG
1 ATAATATCTAATAATAATATCCTATTAGAAATCAAATTACTAAAAA
*
67130596 ATAATATCTAATAAAAATATCCTATTAGAAATCAAATTACTAAAAA
1 ATAATATCTAATAATAATATCCTATTAGAAATCAAATTACTAAAAA
67130642 ATAATATCTAATAATAATATCCTA
1 ATAATATCTAATAATAATATCCTA
67130666 ACACCCCCAT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 65 1.00
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.34
Consensus pattern (46 bp):
ATAATATCTAATAATAATATCCTATTAGAAATCAAATTACTAAAAA
Found at i:67136166 original size:16 final size:15
Alignment explanation
Indices: 67136137--67136170 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
67136127 GTTTCAAGAT
67136137 ATAAATTTTATTAAA
1 ATAAATTTTATTAAA
*
67136152 ATAATATTTTTTTAAA
1 ATAA-ATTTTATTAAA
67136168 ATA
1 ATA
67136171 GCAATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATAAATTTTATTAAA
Found at i:67136347 original size:41 final size:41
Alignment explanation
Indices: 67136302--67136383 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
67136292 TTAACACTAA
67136302 AACAATGAATAATACTTTTATAAATCTATTTTTCATATTTT
1 AACAATGAATAATACTTTTATAAATCTATTTTTCATATTTT
*
67136343 AACAATGAATAATACTTTTATAAATCTATTTTTCATTTTTT
1 AACAATGAATAATACTTTTATAAATCTATTTTTCATATTTT
67136384 TTCTTTCACC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (41 bp):
AACAATGAATAATACTTTTATAAATCTATTTTTCATATTTT
Found at i:67137313 original size:10 final size:10
Alignment explanation
Indices: 67137291--67137367 Score: 50
Period size: 10 Copynumber: 7.7 Consensus size: 10
67137281 TGACATATGG
67137291 TAAAAAATATA
1 TAAAAAAT-TA
67137302 TAAAAAATTA
1 TAAAAAATTA
*
67137312 T-AAAAATCA
1 TAAAAAATTA
*
67137321 TAAAAAAATTG
1 T-AAAAAATTA
**
67137332 TAAAATTTTA
1 TAAAAAATTA
* *
67137342 T-AATAATCA
1 TAAAAAATTA
**
67137351 TAAAAAAACA
1 TAAAAAATTA
67137361 TAAAAAA
1 TAAAAAA
67137368 GGTCCTTTAA
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
9 13 0.25
10 23 0.45
11 15 0.29
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:67137327 original size:30 final size:29
Alignment explanation
Indices: 67137291--67137367 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 29
67137281 TGACATATGG
67137291 TAAAAAATATATAAAAAATTATAAAAATCA
1 TAAAAAA-ATATAAAAAATTATAAAAATCA
* ** *
67137321 TAAAAAAATTGTAAAATTTTATAATAATCA
1 TAAAAAAA-TATAAAAAATTATAAAAATCA
*
67137351 TAAAAAAACATAAAAAA
1 TAAAAAAATATAAAAAA
67137368 GGTCCTTTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
29 6 0.16
30 32 0.84
ACGTcount: A:0.68, C:0.04, G:0.01, T:0.27
Consensus pattern (29 bp):
TAAAAAAATATAAAAAATTATAAAAATCA
Found at i:67137562 original size:20 final size:18
Alignment explanation
Indices: 67137537--67137593 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
67137527 GTACGATAAT
67137537 TTTTATAATTTTTGTACGAA
1 TTTTATAATTTTT-TAC-AA
*
67137557 TTTTAT-ATTTCTTTACAT
1 TTTTATAATTT-TTTACAA
67137575 TTTTATAATTTTCTTACAA
1 TTTTATAATTTT-TTACAA
67137594 CTTAATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 8 0.25
19 16 0.50
20 8 0.25
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTATAATTTTTTACAA
Found at i:67137585 original size:19 final size:20
Alignment explanation
Indices: 67137535--67137586 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
67137525 TAGTACGATA
67137535 ATTTTTATAATTTTTGTACG
1 ATTTTTATAATTTTTGTACG
*
67137555 AATTTTAT-ATTTCTT-TAC-
1 ATTTTTATAATTT-TTGTACG
67137573 ATTTTTATAATTTT
1 ATTTTTATAATTTT
67137587 CTTACAACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 8 0.29
19 11 0.39
20 9 0.32
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (20 bp):
ATTTTTATAATTTTTGTACG
Found at i:67137591 original size:19 final size:19
Alignment explanation
Indices: 67137535--67137592 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
67137525 TAGTACGATA
67137535 ATTTTTATAATTTT-TGTAC
1 ATTTTTATAATTTTCT-TAC
*
67137554 GAATTTTAT-A-TTTCTTTAC
1 -ATTTTTATAATTTTC-TTAC
67137573 ATTTTTATAATTTTCTTAC
1 ATTTTTATAATTTTCTTAC
67137592 A
1 A
67137593 ACTTAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
18 10 0.31
19 10 0.31
20 12 0.38
ACGTcount: A:0.28, C:0.09, G:0.03, T:0.60
Consensus pattern (19 bp):
ATTTTTATAATTTTCTTAC
Found at i:67137653 original size:19 final size:18
Alignment explanation
Indices: 67137631--67137768 Score: 86
Period size: 19 Copynumber: 7.4 Consensus size: 18
67137621 TAGTTCTATA
67137631 TATTTTTATAATTTATTAT
1 TATTTTTATAATTT-TTAT
* *
67137650 TATTTTTATAAAATTTTAA
1 TATTTTTAT-AATTTTTAT
*
67137669 AATTTTTTATAATTTTT-T
1 TA-TTTTTATAATTTTTAT
* *
67137687 CTAATTTTTAATAAATTTTAG
1 -T-ATTTTT-ATAATTTTTAT
* *
67137708 T-TTTTTATTAAAATTTAAT
1 TATTTTTA-T-AATTTTTAT
*
67137727 AATTTTTATAATTTTTAT
1 TATTTTTATAATTTTTAT
67137745 TAATTTTTAT--TTTTTAT
1 T-ATTTTTATAATTTTTAT
*
67137762 CATTTTT
1 TATTTTT
67137769 TGTCATATGT
Statistics
Matches: 94, Mismatches: 15, Indels: 23
0.71 0.11 0.17
Matches are distributed among these distances:
16 6 0.06
17 8 0.09
18 13 0.14
19 40 0.43
20 27 0.29
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (18 bp):
TATTTTTATAATTTTTAT
Found at i:67137659 original size:29 final size:28
Alignment explanation
Indices: 67137627--67137768 Score: 89
Period size: 29 Copynumber: 5.0 Consensus size: 28
67137617 TCTATAGTTC
*
67137627 TATATATTTTTATAATTTATTATTATTTT
1 TATATATTTTTATAATTT-TTATAATTTT
* * *
67137656 TATAAAATTTTAAAATTTTTTATAATTTT
1 TATATATTTTTATAA-TTTTTATAATTTT
* *
67137685 T-TCTAATTTTTAATAAATTTTAGT--TTTT
1 TATAT-ATTTTT-ATAATTTTTA-TAATTTT
* * *
67137713 TATTAAAATTTAATAATTTTTATAATTTT
1 TA-TATATTTTTATAATTTTTATAATTTT
*
67137742 TAT-TAATTTTTAT--TTTTTATCATTTT
1 TATAT-ATTTTTATAATTTTTATAATTTT
67137768 T
1 T
67137769 TGTCATATGT
Statistics
Matches: 86, Mismatches: 18, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
26 13 0.15
27 1 0.01
28 22 0.26
29 42 0.49
30 8 0.09
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (28 bp):
TATATATTTTTATAATTTTTATAATTTT
Found at i:67137753 original size:10 final size:10
Alignment explanation
Indices: 67137632--67137755 Score: 84
Period size: 10 Copynumber: 12.9 Consensus size: 10
67137622 AGTTCTATAT
67137632 ATTTTTA-TA
1 ATTTTTATTA
67137641 ATTTATTATT-
1 ATTT-TTATTA
*
67137651 ATTTTTATAA
1 ATTTTTATTA
* *
67137661 AATTTTA-AA
1 ATTTTTATTA
67137670 ATTTTT-TATA
1 ATTTTTAT-TA
67137680 ATTTTT-TCTA
1 ATTTTTAT-TA
*
67137690 ATTTTTAATA
1 ATTTTTATTA
* *
67137700 AATTTTAGT-
1 ATTTTTATTA
67137709 -TTTTTATTA
1 ATTTTTATTA
** *
67137718 AAATTTAATA
1 ATTTTTATTA
67137728 ATTTTTA-TA
1 ATTTTTATTA
67137737 ATTTTTATTA
1 ATTTTTATTA
67137747 ATTTTTATT
1 ATTTTTATT
67137756 TTTTATCATT
Statistics
Matches: 91, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
8 6 0.07
9 24 0.26
10 60 0.66
11 1 0.01
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.64
Consensus pattern (10 bp):
ATTTTTATTA
Found at i:67139268 original size:19 final size:19
Alignment explanation
Indices: 67139244--67139335 Score: 170
Period size: 19 Copynumber: 4.9 Consensus size: 19
67139234 ATAATCTTCA
67139244 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67139263 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67139282 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67139299 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67139318 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
67139336 AGATATGATT
Statistics
Matches: 71, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
17 17 0.24
19 54 0.76
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:67139276 original size:36 final size:36
Alignment explanation
Indices: 67139236--67139342 Score: 141
Period size: 36 Copynumber: 3.0 Consensus size: 36
67139226 ATGGAAATAT
67139236 AATCTTCA-ATGATATGCAATCTTAGATATGATATGC
1 AATCTT-AGATGATATGCAATCTTAGATATGATATGC
*
67139272 AATCTTAGAT-ATGATACAATCTTAGATATGATATGC
1 AATCTTAGATGAT-ATGCAATCTTAGATATGATATGC
67139308 AATCTTAGATATGATATGCAATCTTAGA-A-GATATG
1 AATCTTAG--ATGATATGCAATCTTAGATATGATATG
67139343 ATTTTGTAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
35 3 0.05
36 44 0.69
37 1 0.02
38 14 0.22
39 2 0.03
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (36 bp):
AATCTTAGATGATATGCAATCTTAGATATGATATGC
Found at i:67139361 original size:22 final size:22
Alignment explanation
Indices: 67139244--67139358 Score: 105
Period size: 19 Copynumber: 5.8 Consensus size: 22
67139234 ATAATCTTCA
67139244 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
67139263 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
67139282 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
67139299 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
67139318 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
67139340 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
67139359 GATTTAATTT
Statistics
Matches: 88, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
17 17 0.19
19 51 0.58
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:67139735 original size:6 final size:6
Alignment explanation
Indices: 67139724--67139753 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
67139714 TAGTAATACA
67139724 TTGCAT TTGCAT TTGCAT TTGCAT TTGCAT
1 TTGCAT TTGCAT TTGCAT TTGCAT TTGCAT
67139754 GACCGTTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
TTGCAT
Found at i:67140072 original size:181 final size:180
Alignment explanation
Indices: 67139768--67140130 Score: 708
Period size: 181 Copynumber: 2.0 Consensus size: 180
67139758 GTTGTGGTCA
*
67139768 CACCCTTAAGTGGGAGTGAGAAGCTACGCTTTCGTAAGGTTTTCACTTTCGTATGAGCTAGTGGA
1 CACCCTTAAGTGGGAGTGAGAAGCTACGCTTTCGTAAGGTTTTCACCTTCGTATGAGCTAGTGGA
67139833 TTGCTTCTGAGATACTGTACCTATGTCTTCGTGAGATTTTCATCTCCGTATGGCCATAAGGAAAT
66 TTGCTTCTGAGATACTGTACCTATGTCTTCGTGAGATTTTCATCTCCGTATGGCCATAAGGAAAT
67139898 GTGTCCCCCTGAACTGAACTTGGTCTATATGAGCCTATAATGGGTGAAGAC
131 GTGTCCCCCTGAACTGAACTTGGTCTATAT-AGCCTATAATGGGTGAAGAC
67139949 CACCCTTAAGTGGGAGTGAGAAGCTACGCTTTCGTAAGGTTTTCACCTTCGTATGAGCTAGTGGA
1 CACCCTTAAGTGGGAGTGAGAAGCTACGCTTTCGTAAGGTTTTCACCTTCGTATGAGCTAGTGGA
67140014 TTGCTTCTGAGATACTGTACCTATGTCTTCGTGAGATTTTCATCTCCGTATGGCCATAAGGAAAT
66 TTGCTTCTGAGATACTGTACCTATGTCTTCGTGAGATTTTCATCTCCGTATGGCCATAAGGAAAT
67140079 GTGTCCCCCTGAACTGAACTTGGTCTATATAGCCTATAATGGGTGAAGAC
131 GTGTCCCCCTGAACTGAACTTGGTCTATATAGCCTATAATGGGTGAAGAC
67140129 CA
1 CA
67140131 AGGAATATGC
Statistics
Matches: 181, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
180 22 0.12
181 159 0.88
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (180 bp):
CACCCTTAAGTGGGAGTGAGAAGCTACGCTTTCGTAAGGTTTTCACCTTCGTATGAGCTAGTGGA
TTGCTTCTGAGATACTGTACCTATGTCTTCGTGAGATTTTCATCTCCGTATGGCCATAAGGAAAT
GTGTCCCCCTGAACTGAACTTGGTCTATATAGCCTATAATGGGTGAAGAC
Found at i:67140763 original size:42 final size:42
Alignment explanation
Indices: 67140704--67140788 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
67140694 CCTACTTTGG
67140704 AGGAGTATACAACCTTGCTTCGTTGTCCGAGAATTCAAGGTA
1 AGGAGTATACAACCTTGCTTCGTTGTCCGAGAATTCAAGGTA
67140746 AGGAGTATACAACCTTGCTTCGTTGTCCGAGAATTCAAGGTA
1 AGGAGTATACAACCTTGCTTCGTTGTCCGAGAATTCAAGGTA
67140788 A
1 A
67140789 CAAAGCTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (42 bp):
AGGAGTATACAACCTTGCTTCGTTGTCCGAGAATTCAAGGTA
Found at i:67147601 original size:78 final size:78
Alignment explanation
Indices: 67147472--67147687 Score: 351
Period size: 78 Copynumber: 2.8 Consensus size: 78
67147462 CAAAGAAACA
* *
67147472 GATTTGGCATCTCTATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
67147537 GCAGATCTAAGAT
66 GCAGATCCAAGAT
* * *
67147550 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
67147615 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
67147628 GATTTGGCATCACTATATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
67147688 GATGTTTTCA
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 126 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:67147829 original size:29 final size:30
Alignment explanation
Indices: 67147793--67147850 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
67147783 TATTAGATGA
* *
67147793 GGAGCAGATTGAAGA-AGCAGATTTGGCGG
1 GGAGCAGATCGAAGATAACAGATTTGGCGG
67147822 GGAGCAGATCGAAGATAACAGATTTGGCG
1 GGAGCAGATCGAAGATAACAGATTTGGCG
67147851 TCTCTGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.33, C:0.12, G:0.38, T:0.17
Consensus pattern (30 bp):
GGAGCAGATCGAAGATAACAGATTTGGCGG
Found at i:67148260 original size:14 final size:15
Alignment explanation
Indices: 67148241--67148296 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
67148231 AATCTTCAAT
67148241 GATATG-CAATCTTA
1 GATATGACAATCTTA
67148255 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
67148272 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
67148290 GATATGA
1 GATATGA
67148297 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:67148285 original size:35 final size:37
Alignment explanation
Indices: 67148239--67148317 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
67148229 ATAATCTTCA
67148239 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
67148275 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
67148311 A-GATATG
1 ATGATATG
67148318 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:67148317 original size:17 final size:19
Alignment explanation
Indices: 67148239--67148310 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
67148229 ATAATCTTCA
67148239 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67148258 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67148275 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67148293 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
67148311 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:67148336 original size:22 final size:22
Alignment explanation
Indices: 67148239--67148333 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
67148229 ATAATCTTCA
67148239 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
67148258 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
67148275 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
67148293 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
67148315 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
67148334 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:67151145 original size:52 final size:52
Alignment explanation
Indices: 67151081--67151187 Score: 207
Period size: 51 Copynumber: 2.1 Consensus size: 52
67151071 TGGGTCGAAA
67151081 TAAGAATGAAAAAAAACAATGGTGCAAATGGGGTGGCTTGAACTTAAGCAAG
1 TAAGAATGAAAAAAAACAATGGTGCAAATGGGGTGGCTTGAACTTAAGCAAG
67151133 TAAG-ATGAAAAAAAACAATGGTGCAAATGGGGTGGCTTGAACTTAAGCAAG
1 TAAGAATGAAAAAAAACAATGGTGCAAATGGGGTGGCTTGAACTTAAGCAAG
67151184 TAAG
1 TAAG
67151188 GGGGAGAAAC
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 51 0.93
52 4 0.07
ACGTcount: A:0.44, C:0.09, G:0.27, T:0.20
Consensus pattern (52 bp):
TAAGAATGAAAAAAAACAATGGTGCAAATGGGGTGGCTTGAACTTAAGCAAG
Found at i:67157053 original size:50 final size:49
Alignment explanation
Indices: 67156886--67157064 Score: 277
Period size: 49 Copynumber: 3.6 Consensus size: 49
67156876 CTGGTACGCA
* * * *
67156886 TAGTACCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
67156935 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
67156984 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
67157034 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
67157065 TCACAGTTTT
Statistics
Matches: 121, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
49 78 0.64
50 43 0.36
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:67157056 original size:99 final size:98
Alignment explanation
Indices: 67156886--67157064 Score: 277
Period size: 99 Copynumber: 1.8 Consensus size: 98
67156876 CTGGTACGCA
* ** *
67156886 TAGTACCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTACCCTGCACATAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACTTA
67156951 GTACTACACACGTGACCAATTATCCGGTACACG
66 GTACTACACACGTGACCAATTATCCGGTACACG
* * * *
67156984 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTACCCTGCACATAGTACTACACACGCGACC-AACCATCCGATACACGTAGTAGCCTGCACTT
67157049 AGTACTACACACGTGA
65 AGTACTACACACGTGA
67157065 TCACAGTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
98 29 0.40
99 43 0.60
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (98 bp):
TAGTACCCTGCACATAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTGCACTTA
GTACTACACACGTGACCAATTATCCGGTACACG
Found at i:67169690 original size:14 final size:16
Alignment explanation
Indices: 67169670--67169705 Score: 58
Period size: 14 Copynumber: 2.4 Consensus size: 16
67169660 TTATTTTTAT
67169670 TAAAATTAAAA-ATTA
1 TAAAATTAAAATATTA
67169685 -AAAATTAAAATATTA
1 TAAAATTAAAATATTA
67169700 TAAAAT
1 TAAAAT
67169706 AATATAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 10 0.53
15 4 0.21
16 5 0.26
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TAAAATTAAAATATTA
Found at i:67169699 original size:8 final size:7
Alignment explanation
Indices: 67169671--67169705 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
67169661 TATTTTTATT
67169671 AAAATTA
1 AAAATTA
67169678 AAAATTA
1 AAAATTA
67169685 AAAATTA
1 AAAATTA
67169692 AAATATTA
1 AAA-ATTA
67169700 TAAAAT
1 -AAAAT
67169706 AATATAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 17 0.65
8 6 0.23
9 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
AAAATTA
Found at i:67171674 original size:13 final size:13
Alignment explanation
Indices: 67171656--67171695 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
67171646 GACAATTAGC
*
67171656 AAAAGAAGAAGAA
1 AAAAGAAAAAGAA
67171669 AAAAGAAAAAG-A
1 AAAAGAAAAAGAA
67171681 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
67171694 AA
1 AA
67171696 CTCCGTTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:67171677 original size:6 final size:6
Alignment explanation
Indices: 67171656--67171695 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
67171646 GACAATTAGC
*
67171656 AAAAGA AGAAGAA AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAG-A AAAAGA AAAAGA AAAAGA AAAAGA AAA
67171696 CTCCGTTGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:67172102 original size:7 final size:8
Alignment explanation
Indices: 67172085--67172109 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
67172075 ATATCCGGAT
67172085 AAAAATAA
1 AAAAATAA
67172093 AAAAATAA
1 AAAAATAA
67172101 AAAAATAA
1 AAAAATAA
67172109 A
1 A
67172110 CTACCCAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:67173177 original size:12 final size:13
Alignment explanation
Indices: 67173141--67173168 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
67173131 CTTCCTATTG
67173141 GATAAGAATAAAA
1 GATAAGAATAAAA
67173154 GATAAGAATAAAA
1 GATAAGAATAAAA
67173167 GA
1 GA
67173169 GTAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.14
Consensus pattern (13 bp):
GATAAGAATAAAA
Found at i:67176165 original size:13 final size:13
Alignment explanation
Indices: 67176147--67176196 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
67176137 TCAGAAATAT
67176147 TTTGGAAAAGTGC
1 TTTGGAAAAGTGC
*
67176160 TTTGGAAAAGTAC
1 TTTGGAAAAGTGC
* *
67176173 TTTTGAGAAGTGC
1 TTTGGAAAAGTGC
67176186 TATT-GAAAAGT
1 T-TTGGAAAAGT
67176197 TTGGTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 29 0.94
14 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (13 bp):
TTTGGAAAAGTGC
Found at i:67176420 original size:24 final size:25
Alignment explanation
Indices: 67176390--67176436 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
67176380 ATATATGAAA
*
67176390 TATAAATTTTAAATATTT-TAAAGC
1 TATAAATATTAAATATTTATAAAGC
*
67176414 TATAAATATTAATTATTTATAAA
1 TATAAATATTAAATATTTATAAA
67176437 ATTTAATTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (25 bp):
TATAAATATTAAATATTTATAAAGC
Found at i:67177833 original size:20 final size:20
Alignment explanation
Indices: 67177810--67177852 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
67177800 ATTTTTAAAA
*
67177810 TTTTAAATAAATTTTAGTAT
1 TTTTAAATAAATTTTAATAT
**
67177830 TTTTTTATAAATTTTAATAT
1 TTTTAAATAAATTTTAATAT
67177850 TTT
1 TTT
67177853 AATTTTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTAAATAAATTTTAATAT
Found at i:67182516 original size:19 final size:21
Alignment explanation
Indices: 67182494--67182538 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
67182484 TCGTATTACT
*
67182494 TATATTTCATTGTATATTATA
1 TATATTTCATTATATATTATA
*
67182515 TATATTTTATTATATATTATA
1 TATATTTCATTATATATTATA
67182536 TAT
1 TAT
67182539 TATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
TATATTTCATTATATATTATA
Found at i:67182541 original size:17 final size:15
Alignment explanation
Indices: 67182508--67182605 Score: 94
Period size: 17 Copynumber: 6.3 Consensus size: 15
67182498 TTTCATTGTA
67182508 TATTATATA-TATTT
1 TATTATATATTATTT
67182522 TATTATATATTATATAT
1 TATTATATATTAT-T-T
*
67182539 TATTATATATTGTTCT
1 TATTATATATTATT-T
*
67182555 CTA-TATTATCTTCATTT
1 -TATTA-TATATT-ATTT
67182572 TATTATATATTATTT
1 TATTATATATTATTT
*
67182587 TATTATTTATTA-TT
1 TATTATATATTATTT
67182601 TATTA
1 TATTA
67182606 GCATATATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
14 16 0.23
15 18 0.25
16 12 0.17
17 23 0.32
18 2 0.03
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (15 bp):
TATTATATATTATTT
Found at i:67182584 original size:7 final size:7
Alignment explanation
Indices: 67182570--67182605 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
67182560 TTATCTTCAT
67182570 TTTATTA
1 TTTATTA
*
67182577 TATATTA
1 TTTATTA
67182584 TTTTATTA
1 -TTTATTA
67182592 TTTATTA
1 TTTATTA
67182599 TTTATTA
1 TTTATTA
67182606 GCATATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTATTA
Found at i:67194601 original size:44 final size:44
Alignment explanation
Indices: 67194553--67195041 Score: 662
Period size: 44 Copynumber: 11.1 Consensus size: 44
67194543 AAGATGACAA
*
67194553 ATTTGGCGTCTCTGTAGTGACAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAG
* *
67194597 ATTTGGCGTCTCTATATTGACAGAGAGGAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAG
* * * * *
67194641 ATTTGGCGTCTCTGTATTGTCAGAGAGTAGATCTAAGAGAGCCG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAG
* * *
67194685 ATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGAT-GATAG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG-CAG
* * *
67194729 ATTTGGTGTCTCTGTAGTGACAGAGAGCAGATCGAAGATAGCCG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAG
*
67194773 ATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAG
* *
67194817 ATTTGGCATCTCTGTATTGACAGAGAGCAGATC-ATCGATAGCAG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGA-AGATAGCAG
* *
67194861 ATTTGGCATCTCTGTATTGACAGAGAGCAGATC-ACCGATAGCAG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGA-AGATAGCAG
*
67194905 ATTTGGCGTCTCTGTATTGACAGAGAGTAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAG
* * * *
67194949 ATTTGGCGTCTCTGTGTTGACAGAGATCAGATCAAAGAT-GACAA
1 ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG-CAG
* * *
67194993 ATTTTGCGTCTCTGTATTGGACGGGGAGCAGATCGAAGATAGCAG
1 ATTTGGCGTCTCTGTATT-GACAGAGAGCAGATCGAAGATAGCAG
67195038 ATTT
1 ATTT
67195042 AACATTCCTG
Statistics
Matches: 394, Mismatches: 44, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
43 3 0.01
44 365 0.93
45 25 0.06
46 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (44 bp):
ATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCAG
Found at i:67196630 original size:29 final size:29
Alignment explanation
Indices: 67196597--67196728 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
67196587 GTGACGAGAT
*
67196597 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
67196626 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
67196655 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
67196684 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
67196713 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
67196729 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:67199704 original size:25 final size:25
Alignment explanation
Indices: 67199675--67199723 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
67199665 TCGTATTACT
**
67199675 TATATTTCATTGTATATTATATATA
1 TATATTTCATTACATATTATATATA
*
67199700 TATATTTTATTACATATTATATAT
1 TATATTTCATTACATATTATATAT
67199724 TATTATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (25 bp):
TATATTTCATTACATATTATATATA
Found at i:67199727 original size:10 final size:10
Alignment explanation
Indices: 67199668--67199778 Score: 52
Period size: 10 Copynumber: 10.7 Consensus size: 10
67199658 TTATTTATCG
67199668 TATTACTTATA
1 TATTA-TTATA
*
67199679 T-TTCATTGTA
1 TATT-ATTATA
67199689 TATTA-TATA
1 TATTATTATA
*
67199698 TATATATTTTA
1 TAT-TATTATA
*
67199709 TTACATATTATA
1 -TA-TTATTATA
67199721 TATTATTATA
1 TATTATTATA
* *
67199731 TATTGTTCTCTA
1 TATT-AT-TATA
67199743 TATTATCT-TCA
1 TATTAT-TAT-A
*
67199754 TTTTATTATA
1 TATTATTATA
67199764 TATTATT-T-
1 TATTATTATA
67199772 TATTATT
1 TATTATT
67199779 TATTATTTAT
Statistics
Matches: 79, Mismatches: 11, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
8 7 0.09
9 7 0.09
10 30 0.38
11 20 0.25
12 15 0.19
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (10 bp):
TATTATTATA
Found at i:67199734 original size:7 final size:7
Alignment explanation
Indices: 67199687--67199731 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
67199677 TATTTCATTG
67199687 TATATTA
1 TATATTA
67199694 TATA-TA
1 TATATTA
67199700 TATATT-
1 TATATTA
67199706 T-TATTA
1 TATATTA
*
67199712 CATATTA
1 TATATTA
67199719 TATATTA
1 TATATTA
67199726 TTATAT
1 -TATAT
67199732 ATTGTTCTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
6 7 0.22
7 16 0.50
8 5 0.16
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (7 bp):
TATATTA
Found at i:67199769 original size:7 final size:7
Alignment explanation
Indices: 67199755--67199788 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
67199745 TTATCTTCAT
67199755 TTTATTA
1 TTTATTA
*
67199762 TATATTA
1 TTTATTA
67199769 TTTTATTA
1 -TTTATTA
67199777 TTTATTA
1 TTTATTA
67199784 TTTAT
1 TTTAT
67199789 GAGCATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTATTA
Found at i:67199787 original size:29 final size:29
Alignment explanation
Indices: 67199694--67199788 Score: 68
Period size: 33 Copynumber: 3.0 Consensus size: 29
67199684 TTGTATATTA
67199694 TATATATATATTTTATTACATATTA-TATATTAT
1 TATATAT-TATTTTATT--AT-TTATTAT-TTAT
* *
67199727 TATATATTGTTCTCTA-TATTATCTTCATTTTAT
1 TATATATTATT-T-TATTATT-TATT-A-TTTAT
67199760 TATATATTATTTTATTATTTATTATTTAT
1 TATATATTATTTTATTATTTATTATTTAT
67199789 GAGCATATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 18
0.70 0.05 0.25
Matches are distributed among these distances:
29 5 0.10
30 2 0.04
31 8 0.16
32 9 0.18
33 24 0.47
34 3 0.06
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (29 bp):
TATATATTATTTTATTATTTATTATTTAT
Found at i:67204894 original size:29 final size:28
Alignment explanation
Indices: 67204852--67204912 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
67204842 GTGAGCATGA
*
67204852 ATATAAGGTGATTTGGGCCTAACGGGCC
1 ATATAAGGTGATTTGGGCCTAACAGGCC
*
67204880 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAACAGGCC
67204909 ATAT
1 ATAT
67204913 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAACAGGCC
Found at i:67204925 original size:29 final size:29
Alignment explanation
Indices: 67204859--67204975 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
67204849 TGAATATAAG
* * * *
67204859 GTGATTTGGGCCTAACGGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* *
67204888 GTGATTTGGGCCTAATAGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
* * * *
67204917 ATGAATTGGGCATGATGAGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
*
67204946 GTGAATTGGGCCTGATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
67204975 G
1 G
67204976 AGATGTGCCA
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:67207690 original size:40 final size:40
Alignment explanation
Indices: 67207564--67207692 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
67207554 ATGCTGGAAA
* * *
67207564 TTATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
67207603 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
67207643 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
67207683 TTATATCCGG
1 TTATATCCGG
67207693 TTATATTCCG
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
39 15 0.21
40 58 0.79
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:67215543 original size:40 final size:40
Alignment explanation
Indices: 67215477--67215627 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
67215467 AAATTGAATG
* * *
67215477 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67215516 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
67215556 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
67215596 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
67215628 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67215641 original size:40 final size:40
Alignment explanation
Indices: 67215514--67215643 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
67215504 ATGCTGGAAA
* * *
67215514 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
67215554 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
67215594 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
67215634 TTATATCCGG
1 TTATATCCGG
67215644 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:67220465 original size:29 final size:29
Alignment explanation
Indices: 67220433--67220505 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
67220423 CTTCGAGCTC
* *
67220433 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
67220462 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
67220491 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
67220506 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:67222486 original size:40 final size:40
Alignment explanation
Indices: 67222406--67222664 Score: 425
Period size: 40 Copynumber: 6.5 Consensus size: 40
67222396 TTCGGATGAC
* *
67222406 ATCCGAGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
67222445 ATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
67222485 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
67222525 ATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
67222565 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
67222605 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
67222645 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
67222665 TACTTGGGTT
Statistics
Matches: 209, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
39 37 0.18
40 170 0.81
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:67228417 original size:44 final size:45
Alignment explanation
Indices: 67228231--67228424 Score: 191
Period size: 44 Copynumber: 4.4 Consensus size: 45
67228221 AAGAGGAAGA
** **
67228231 ATTGGTGGCTTCGTCCACAACCTACATGGCAGCTTGTCTGTAAA-
1 ATTGGTGGCTTTATCCACAACCTACATGGCAGCTTGTCTACAAAT
* * * *
67228275 ATTGGTTG-TTTATCCGCAACCTACATGGTAGCTTGTCTTCAAAT
1 ATTGGTGGCTTTATCCACAACCTACATGGCAGCTTGTCTACAAAT
* * * *
67228319 ATTAGTGG-TTTATCCACAACTTACATGGAAAC-TGTCTACAAAT
1 ATTGGTGGCTTTATCCACAACCTACATGGCAGCTTGTCTACAAAT
* * * * *
67228362 ATTGTTGGCTTTGTCCATAACCTACACGGCAGCTTGTCTACGAAT
1 ATTGGTGGCTTTATCCACAACCTACATGGCAGCTTGTCTACAAAT
*
67228407 -TTGGTGGCTTTAACCACA
1 ATTGGTGGCTTTATCCACA
67228425 TATATTGGTG
Statistics
Matches: 120, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
43 45 0.38
44 65 0.54
45 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
ATTGGTGGCTTTATCCACAACCTACATGGCAGCTTGTCTACAAAT
Found at i:67235007 original size:46 final size:46
Alignment explanation
Indices: 67234875--67235089 Score: 149
Period size: 46 Copynumber: 4.6 Consensus size: 46
67234865 TGTGTGAACT
* * * *
67234875 AGTGTAAGACATGTTTGGGACATGCATCAGCCA-C-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCGA-GACGTA-AGCC
* * *
67234921 AGTGTAAGACCGA-GTCTGGGACATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGA-C-ATGTCTGGGACAT-GCATCGGCATCGAGACGTA-AGCC
** *
67234969 AGTGTAAGATTTGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGTAAGCC
* * * * *
67235015 AGTGTGAGACATGTCTGGGACATGCATCGAC-TACAAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGTAAGCC
67235059 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
67235090 ACACCTGACC
Statistics
Matches: 138, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 65 0.47
47 26 0.19
48 21 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGTAAGCC
Found at i:67238228 original size:13 final size:13
Alignment explanation
Indices: 67238212--67238237 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67238202 TGCATGACTC
67238212 GTATACTTTGATT
1 GTATACTTTGATT
67238225 GTATACTTTGATT
1 GTATACTTTGATT
67238238 TAAATGAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
GTATACTTTGATT
Found at i:67255242 original size:7 final size:7
Alignment explanation
Indices: 67255230--67255255 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
67255220 CCTAGATGAA
67255230 TTGGGCT
1 TTGGGCT
67255237 TTGGGCT
1 TTGGGCT
67255244 TTGGGCT
1 TTGGGCT
67255251 TTGGG
1 TTGGG
67255256 TTTCATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.46, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:67256806 original size:29 final size:28
Alignment explanation
Indices: 67256719--67256806 Score: 131
Period size: 29 Copynumber: 3.1 Consensus size: 28
67256709 GTGAGCATGA
67256719 ATATAATGTGATTTGGGCCTAATAGGCC
1 ATATAATGTGATTTGGGCCTAATAGGCC
* *
67256747 ACATCAATGTGATTTGGGCCTAATGGGCC
1 ATAT-AATGTGATTTGGGCCTAATAGGCC
*
67256776 ATATAAATGTGAATTGGGCCTAATAGGCC
1 ATAT-AATGTGATTTGGGCCTAATAGGCC
67256805 AT
1 AT
67256807 GTGAATATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 3 0.06
29 50 0.94
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (28 bp):
ATATAATGTGATTTGGGCCTAATAGGCC
Found at i:67256837 original size:57 final size:58
Alignment explanation
Indices: 67256719--67256837 Score: 143
Period size: 58 Copynumber: 2.1 Consensus size: 58
67256709 GTGAGCATGA
* * * *
67256719 ATAT-AATGTGATTTGGGCCTAATAGGCCACATCAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGAATTGGGCCTAATAGGCCACATCAATATGAATTGGGCCTAATGGACC
** * * *
67256776 ATATAAATGTGAATTGGGCCTAATAGGCCATGTGAATAT-AATTGGGTCTAGTGGACC
1 ATATAAATGTGAATTGGGCCTAATAGGCCACATCAATATGAATTGGGCCTAATGGACC
67256833 ATATA
1 ATATA
67256838 CAGGTATGTG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 23 0.44
58 29 0.56
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (58 bp):
ATATAAATGTGAATTGGGCCTAATAGGCCACATCAATATGAATTGGGCCTAATGGACC
Found at i:67258255 original size:19 final size:19
Alignment explanation
Indices: 67258231--67258269 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
67258221 GATTATTCAG
67258231 AAAATACAACTTGAAAGTT
1 AAAATACAACTTGAAAGTT
*
67258250 AAAATACACCTTGAAAGTT
1 AAAATACAACTTGAAAGTT
67258269 A
1 A
67258270 TGTCTCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (19 bp):
AAAATACAACTTGAAAGTT
Found at i:67265703 original size:13 final size:14
Alignment explanation
Indices: 67265685--67265717 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
67265675 ATAATATTCA
67265685 TTTTTC-TTTAAAT
1 TTTTTCTTTTAAAT
67265698 TTTTTCTTTTAAAT
1 TTTTTCTTTTAAAT
*
67265712 TATTTC
1 TTTTTC
67265718 ACATAAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTCTTTTAAAT
Found at i:67270126 original size:6 final size:6
Alignment explanation
Indices: 67270115--67270140 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
67270105 TTATTTTTTA
67270115 TTATAT TTATAT TTATAT TTATAT TT
1 TTATAT TTATAT TTATAT TTATAT TT
67270141 TTACGGATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATAT
Found at i:67273096 original size:29 final size:28
Alignment explanation
Indices: 67273059--67273115 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
67273049 ATAATTTTGT
* *
67273059 ATTTATATTCTTATATTATTATTAATTA
1 ATTTATATTCTTATAATATAATTAATTA
*
67273087 ATTTAATATTTTTATAATATAATTAATTA
1 ATTT-ATATTCTTATAATATAATTAATTA
67273116 TTTCAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (28 bp):
ATTTATATTCTTATAATATAATTAATTA
Found at i:67273117 original size:21 final size:21
Alignment explanation
Indices: 67273071--67273118 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
67273061 TTATATTCTT
*
67273071 ATATTATTATTAATTAATTTA
1 ATATTTTTATTAATTAATTTA
67273092 ATATTTTTA-TAATATAA-TTA
1 ATATTTTTATTAAT-TAATTTA
67273112 ATTATTT
1 A-TATTT
67273119 CAAATAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATATTTTTATTAATTAATTTA
Found at i:67273409 original size:21 final size:21
Alignment explanation
Indices: 67273384--67273428 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
67273374 ACCTTTTTGT
67273384 TTTTAAAATATTTTTTAATGA
1 TTTTAAAATATTTTTTAATGA
67273405 TTTTAAAATATTTTTTAATGA
1 TTTTAAAATATTTTTTAATGA
67273426 TTT
1 TTT
67273429 ATTCAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
TTTTAAAATATTTTTTAATGA
Found at i:67277684 original size:15 final size:15
Alignment explanation
Indices: 67277650--67277688 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
67277640 CGTAAATGAC
*
67277650 TAAAATAT-AATATT
1 TAAAATATAAATAAT
*
67277664 TCAAATATAAATAAT
1 TAAAATATAAATAAT
67277679 TAAAATATAA
1 TAAAATATAA
67277689 CATGAGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (15 bp):
TAAAATATAAATAAT
Found at i:67278903 original size:19 final size:20
Alignment explanation
Indices: 67278873--67278916 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
67278863 CGGAAAATAA
67278873 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
*
67278893 TTTCT-GAAAATGATTTATT
1 TTTCTGGAAAATGATTTACT
67278912 TTTCT
1 TTTCT
67278917 AGTGTTTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.27, C:0.09, G:0.11, T:0.52
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:67279076 original size:40 final size:40
Alignment explanation
Indices: 67278997--67279076 Score: 90
Period size: 40 Copynumber: 2.0 Consensus size: 40
67278987 TTGGAAAAGC
* **
67278997 TGTTTTTACATATATTAATTAATAAATTTATATTTTAAAT
1 TGTTTTTACATATATTAAATAATAAATTTATATAATAAAT
* **
67279037 TGTTTTTACATATATTACAATGATTTATTTATA-AATAAAT
1 TGTTTTTACATATATTA-AATAATAAATTTATATAATAAAT
67279077 AAATCAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
40 22 0.67
41 11 0.33
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (40 bp):
TGTTTTTACATATATTAAATAATAAATTTATATAATAAAT
Found at i:67282044 original size:17 final size:16
Alignment explanation
Indices: 67282022--67282056 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
67282012 TTTTATAACC
*
67282022 TATAAAAATATAATATT
1 TATAAAAAAATAAT-TT
67282039 TATAAAAAAATAATTT
1 TATAAAAAAATAATTT
67282055 TA
1 TA
67282057 AAATATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TATAAAAAAATAATTT
Found at i:67286624 original size:29 final size:29
Alignment explanation
Indices: 67286582--67286639 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
67286572 TGGTAGTTGA
67286582 CTATGTTCCAAGACAATATCAAGTGGCTT
1 CTATGTTCCAAGACAATATCAAGTGGCTT
67286611 CTATGTTCCAAGACAATATCAAGTGGCTT
1 CTATGTTCCAAGACAATATCAAGTGGCTT
67286640 ACATACTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (29 bp):
CTATGTTCCAAGACAATATCAAGTGGCTT
Found at i:67286786 original size:22 final size:22
Alignment explanation
Indices: 67286764--67286806 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
67286754 TATATAAATA
67286764 AAAAT-AAATAAATATTTATAT
1 AAAATAAAATAAATATTTATAT
67286785 AAAATAAAATAAATATTTATAT
1 AAAATAAAATAAATATTTATAT
67286807 TTAAAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAATAAAATAAATATTTATAT
Found at i:67288194 original size:2 final size:2
Alignment explanation
Indices: 67288187--67288217 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
67288177 TAGATTACAA
67288187 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67288218 AATAATAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67291164 original size:26 final size:26
Alignment explanation
Indices: 67291128--67291263 Score: 245
Period size: 26 Copynumber: 5.2 Consensus size: 26
67291118 TGATACAAAT
67291128 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
67291154 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
67291180 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
67291206 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
67291232 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
67291258 TGATAA
1 TGATAA
67291264 GAATATCATG
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:67293297 original size:137 final size:136
Alignment explanation
Indices: 67293052--67293337 Score: 509
Period size: 137 Copynumber: 2.1 Consensus size: 136
67293042 GAGTAGTCTC
*
67293052 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
* *
67293117 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTTTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
67293182 CTGTTA
131 CTGTTA
67293188 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
67293253 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTGATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
67293318 ACTGTTA
130 ACTGTTA
**
67293325 CCTGAATGGGCTT
1 CCCAAATGGGCTT
67293338 AGGCCAATAG
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 20 0.14
137 123 0.86
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:67295377 original size:2 final size:2
Alignment explanation
Indices: 67295370--67295398 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
67295360 ATTTTAAAGA
67295370 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67295399 ATAAGTTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67297265 original size:167 final size:170
Alignment explanation
Indices: 67297076--67297478 Score: 489
Period size: 177 Copynumber: 2.3 Consensus size: 170
67297066 CACTGCAACT
* *
67297076 TCAGAGTGATAAGGCTAGTGGCTTAAATCTGTTCCATTGCCGATACATGGAGATAAGATTCGCCA
1 TCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATT-GCCA
* * *
67297141 TCTTCGATCCTGCT-TAG-G-A-A-A-ATAAGATCTGCAATTTTCAGTCTGCTTCTTTGCTACCT
65 TCTTCGAT-CTGCTCTAGCGAATAGAGATAAGATCTACAATTTTCAGTCTGCTTC-CTG-TAACT
*
67297200 T-AGGAAAATAAGACTTGTATCTTCAACTTGCTCTCTTGCTACC
127 TCAGGAAAATAAGACCTGTATCTTCAACTTGCTCTCTTGCTACC
* * *
67297243 TCAGAGAGGTAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGGTAAGACTTGCCA
1 TCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TTGCCA
* * *
67297308 TTTTCGATCTGCTCCATAGTCGATACATAGAGATAATATCTATAATTTTCAGTCTGCTTCCTGTA
65 TCTTCGATCTGCT-C-TAG-CG--A-ATAGAGATAAGATCTACAATTTTCAGTCTGCTTCCTGTA
* *
67297373 ACTTCAGGAAGATAAGACCTGTATCTTCAACTTTCTCTCTTGCTACC
124 ACTTCAGGAAAATAAGACCTGTATCTTCAACTTGCTCTCTTGCTACC
* * *
67297420 TCAGAAAGATAAGGCTGGTGGC-TAAAGTCTGCTCCATAGCCGATACATGGAGATAAGAT
1 TCAGAGAGATAAGGCTAGTGGCTTAAA-TCTGCTCCATTGCCGATACATGGAGATAAGAT
67297479 CTGTGATTTT
Statistics
Matches: 201, Mismatches: 20, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
166 5 0.02
167 64 0.32
168 2 0.01
169 3 0.01
171 1 0.00
175 1 0.00
176 10 0.05
177 90 0.45
178 25 0.12
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (170 bp):
TCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTGCCAT
CTTCGATCTGCTCTAGCGAATAGAGATAAGATCTACAATTTTCAGTCTGCTTCCTGTAACTTCAG
GAAAATAAGACCTGTATCTTCAACTTGCTCTCTTGCTACC
Done.