Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 237 of 427
Found at i:67297552 original size:132 final size:132
Alignment explanation
Indices: 67297314--67297609 Score: 475
Period size: 132 Copynumber: 2.2 Consensus size: 132
67297304 GCCATTTTCG
* *
67297314 ATCTGCTCCATAGTCGATACATAGAGATAATATCTATAATTTTCAGTCTGCTTCCTGTAACTTCA
1 ATCTGCTCCATAGTCGATACATAGAGATAAGATCTATAATTTTCAGTCTGCTTCCTGCAACTTCA
* *
67297379 GGAAGATAAGACCTGTATCTTCAACTTTCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
66 GGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
67297444 AA
131 AA
* * * * * * *
67297446 GTCTGCTCCATAGCCGATACATGGAGATAAGATCTGTGATTTTCAGTCTGCTTCTTGCAACTTTA
1 ATCTGCTCCATAGTCGATACATAGAGATAAGATCTATAATTTTCAGTCTGCTTCCTGCAACTTCA
* *
67297511 GGAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTA
66 GGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
67297576 AA
131 AA
67297578 ATCTGCTCCATAGTCGATACATAGAGATAAGA
1 ATCTGCTCCATAGTCGATACATAGAGATAAGA
67297610 CCCGCCAATT
Statistics
Matches: 148, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 148 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (132 bp):
ATCTGCTCCATAGTCGATACATAGAGATAAGATCTATAATTTTCAGTCTGCTTCCTGCAACTTCA
GGAAGATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAAAGATAAGGCTGGTGGCTA
AA
Found at i:67297567 original size:309 final size:310
Alignment explanation
Indices: 67297162--67297786 Score: 959
Period size: 309 Copynumber: 2.0 Consensus size: 310
67297152 GCTTAGGAAA
*
67297162 ATAAGATCTGCAATTTTCAGTCTGCTTCTTTGCTACCTTAGGAAAATAAGACTTGTATCTTCAAC
1 ATAAGATCTGCAATTTTCAGTCTGCTTCTTTGCAACCTTAGGAAAATAAGACTTGTATCTTCAAC
* * * *
67297227 TTGCTCTCTTGCTACCTCAGAGAGGTAAGGCTAGTGGCTAAAATCTGCTCCATTGCCGATACATG
66 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATA
* ** * * *
67297292 GAGGTAAGACTTGCCATTTTCGATCTGCTCCATAGTCGATACATAGAGATAATATCTATAATTTT
131 GAGATAAGACCCGCCAATTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTATAATTTT
*
67297357 CAGTCTGCTTCCTGTAACTTCAGGAAGATAAGACCTGTATCTTCAA-CT-TTCTCTCTTGCTACC
196 CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAACCTGTTCT-T-TTGCTACC
* * *
67297420 TCAGAAAGATAAGGCTGGTGGCTAAAGTCTGCTCCATAGCCGATACATGGAG
259 TCAGAAAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAG
** * *
67297472 ATAAGATCTGTGATTTTCAGTCTGCTTC-TTGCAACTTTAGGAAGATAAGACTTGTATCTTCAAC
1 ATAAGATCTGCAATTTTCAGTCTGCTTCTTTGCAACCTTAGGAAAATAAGACTTGTATCTTCAAC
* *
67297536 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATACATA
66 CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATA
* * *
67297601 GAGATAAGACCCGCCAATTTCGATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAATTTT
131 GAGATAAGACCCGCCAATTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTATAATTTT
* * *
67297666 CAGTCTGCTTCTTGCAACTTTAGGAAGATAAGACTTGTATCTTCAACCTGTTCTTTTGCTACCTC
196 CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAACCTGTTCTTTTGCTACCTC
*
67297731 AGAGAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAG
261 AGAAAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAG
67297781 ATAAGA
1 ATAAGA
67297787 CCCACCAATT
Statistics
Matches: 285, Mismatches: 28, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
309 252 0.88
310 29 0.10
311 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (310 bp):
ATAAGATCTGCAATTTTCAGTCTGCTTCTTTGCAACCTTAGGAAAATAAGACTTGTATCTTCAAC
CTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCATAGCCGATACATA
GAGATAAGACCCGCCAATTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTATAATTTT
CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAACCTGTTCTTTTGCTACCTC
AGAAAGATAAGGCTAGTGGCTAAAATCTACTCCATAGCCGATACATGGAG
Found at i:67297752 original size:177 final size:177
Alignment explanation
Indices: 67297447--67298021 Score: 963
Period size: 177 Copynumber: 3.2 Consensus size: 177
67297437 GTGGCTAAAG
*
67297447 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTGATTTTCAGTCTGCTTCTTGCAACTTTAG
1 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCTTGCAACTTTAG
67297512 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
66 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
* *
67297577 AATCTGCTCCATAGTCGATACATAGAGATAAGACCCGCCAATTTCGA
131 AATCTGCTCCATAGCCGATACATGGAGATAAGACCCGCCAATTTCGA
*
67297624 TCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCTTGCAACTTTAG
1 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCTTGCAACTTTAG
* * *
67297689 GAAGATAAGACTTGTATCTTCAACCTGTTCTTTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAA
66 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
* *
67297754 AATCTACTCCATAGCCGATACATGGAGATAAGACCCACCAATTTCGA
131 AATCTGCTCCATAGCCGATACATGGAGATAAGACCCGCCAATTTCGA
* * * * *
67297801 TCTGCTCTATAGCCGATACATGGAAATAAGATCTGTAATTCTCAGTCTGCTTCCTGCAACTTCAG
1 TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCTTGCAACTTTAG
67297866 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
66 GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
* * *
67297931 AATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGA
131 AATCTGCTCCATAGCCGATACATGGAGATAAGACCCGCCAATTTCGA
* *
67297978 TTTGCTCCATAGCTGATACATGGAGATAAGAT-TCGTAATTTTCA
1 TCTGCTCCATAGCCGATACATGGAGATAAGATCT-GTAATTTTCA
67298022 CCGATGTCGC
Statistics
Matches: 369, Mismatches: 28, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
176 1 0.00
177 368 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (177 bp):
TCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCTTGCAACTTTAG
GAAGATAAGACTTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAA
AATCTGCTCCATAGCCGATACATGGAGATAAGACCCGCCAATTTCGA
Found at i:67298180 original size:64 final size:64
Alignment explanation
Indices: 67298079--67298206 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
67298069 TCATATATCT
67298079 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
*
67298143 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
67298207 TTATGAATGA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:67302532 original size:27 final size:27
Alignment explanation
Indices: 67302497--67302553 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
67302487 TATTAATAAA
*
67302497 AAAATTATT-TTTATTTTCAAAAATATTT
1 AAAATTATTGTAT-TTTTC-AAAATATTT
*
67302525 AAAA-TATTGTATTTTTCAATATATTT
1 AAAATTATTGTATTTTTCAAAATATTT
67302551 AAA
1 AAA
67302554 CATACCTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 11 0.42
27 9 0.35
28 6 0.23
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (27 bp):
AAAATTATTGTATTTTTCAAAATATTT
Found at i:67302674 original size:15 final size:16
Alignment explanation
Indices: 67302647--67302677 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
67302637 TATTTTATTT
67302647 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
67302663 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
67302678 TAATTTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:67303708 original size:14 final size:15
Alignment explanation
Indices: 67303676--67303708 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
67303666 TCAATTTTTT
67303676 AATTAAAGTATTCAA
1 AATTAAAGTATTCAA
*
67303691 AATTAAATTATT-AA
1 AATTAAAGTATTCAA
67303705 AATT
1 AATT
67303709 TTACTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (15 bp):
AATTAAAGTATTCAA
Found at i:67304476 original size:28 final size:28
Alignment explanation
Indices: 67304445--67304499 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
67304435 TGTAAGAAAT
* *
67304445 TATTAATAATATTATTTAAATTATAATA
1 TATTAATAATAATATTCAAATTATAATA
* *
67304473 TATTGATATTAATATTCAAATTATAAT
1 TATTAATAATAATATTCAAATTATAAT
67304500 GAATTTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (28 bp):
TATTAATAATAATATTCAAATTATAATA
Found at i:67304545 original size:33 final size:33
Alignment explanation
Indices: 67304481--67304545 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
67304471 TATATTGATA
* *
67304481 TTAATATTCAAATTATAATGAATTTTTATTAAT
1 TTAATATTAAAATTATAATGAATTTTAATTAAT
67304514 TTAATATTAAATATTA-AAT-AATTTTAAATTAA
1 TTAATATTAAA-ATTATAATGAATTTT-AATTAA
67304546 ATAACATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 6 0.21
33 18 0.64
34 4 0.14
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (33 bp):
TTAATATTAAAATTATAATGAATTTTAATTAAT
Found at i:67304942 original size:2 final size:2
Alignment explanation
Indices: 67304935--67304959 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
67304925 TTTAATATTC
67304935 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
67304960 TAAATTCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67308337 original size:4 final size:4
Alignment explanation
Indices: 67308328--67308357 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
67308318 TATGTTCATA
67308328 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
67308358 TGGAATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:67308458 original size:2 final size:2
Alignment explanation
Indices: 67308446--67308476 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
67308436 CTTATTTTAT
*
67308446 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67308477 TTGACATCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:67314110 original size:26 final size:26
Alignment explanation
Indices: 67314081--67314131 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
67314071 CGAAATAAAA
67314081 AATCAAAATCAAACAAA-AA-AAAGAAG
1 AATCAAAAT-AAA-AAAGAAGAAAGAAG
67314107 AATCAAAATAAAAAAGAAGAAAGAA
1 AATCAAAATAAAAAAGAAGAAAGAA
67314132 AAGGAGAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 3 0.13
25 5 0.22
26 15 0.65
ACGTcount: A:0.75, C:0.08, G:0.10, T:0.08
Consensus pattern (26 bp):
AATCAAAATAAAAAAGAAGAAAGAAG
Found at i:67314119 original size:19 final size:19
Alignment explanation
Indices: 67314059--67314127 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
67314049 CTTGAGACCT
*
67314059 TAAAAAA-AAG-ATCGAAA
1 TAAAAAAGAAGAATCAAAA
*
67314076 TAAAAAATCAA-AATCAAACA
1 TAAAAAA-GAAGAATCAAA-A
*
67314096 AAAAAAAGAAGAATCAAAA
1 TAAAAAAGAAGAATCAAAA
67314115 TAAAAAAGAAGAA
1 TAAAAAAGAAGAA
67314128 AGAAAAGGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
17 7 0.16
19 22 0.51
20 14 0.33
ACGTcount: A:0.74, C:0.07, G:0.09, T:0.10
Consensus pattern (19 bp):
TAAAAAAGAAGAATCAAAA
Found at i:67314133 original size:19 final size:19
Alignment explanation
Indices: 67314097--67314133 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67314087 AATCAAACAA
*
67314097 AAAAAAGAAGAATCAAAAT
1 AAAAAAGAAGAAACAAAAT
*
67314116 AAAAAAGAAGAAAGAAAA
1 AAAAAAGAAGAAACAAAA
67314134 GGAGAGGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.78, C:0.03, G:0.14, T:0.05
Consensus pattern (19 bp):
AAAAAAGAAGAAACAAAAT
Found at i:67315864 original size:135 final size:135
Alignment explanation
Indices: 67315520--67315854 Score: 526
Period size: 135 Copynumber: 2.5 Consensus size: 135
67315510 TGGAGCATAT
*
67315520 TAAAGATAGCAGATCTTGTCTCCCTGAAGTTACAGTGGAGTAGATCGAAGCCACAATCATTATCT
1 TAAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGCCACAATCATTATCT
* * *
67315585 CTCTAAAGTTGCAGTAGAGCAGGGTGAAAATACGCAAACCTTATCTCCCTGAAGTTGTAGTAGAG
66 CTCTAAAGTTGCAGTAGAGCAGGATAAAAATACGCAAACCTTATCTCCCTGAAGTTGCAGTAGAG
67315650 CAGAC
131 CAGAC
* * * *
67315655 TAAAGATAGCAGATCTTGTCTCTCTAAAGTTGCAGTGGAGTAGATCGAAGCCACAATCTTTATCC
1 TAAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGCCACAATCATTATCT
* *
67315720 CTCTAAAGTTGCAGTAGAGCAGGATAAAAATACGCAAACCTTATCTCCTTGAAGTTGCAGTGGAG
66 CTCTAAAGTTGCAGTAGAGCAGGATAAAAATACGCAAACCTTATCTCCCTGAAGTTGCAGTAGAG
*
67315785 TAGAC
131 CAGAC
* * * * *
67315790 TGAAGATAGCAGATCTTGTCCCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAAACCTTATCT
1 TAAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGCCACAATCATTATCT
67315855 TCCTGAAGTT
Statistics
Matches: 181, Mismatches: 19, Indels: 0
0.90 0.09 0.00
Matches are distributed among these distances:
135 181 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (135 bp):
TAAAGATAGCAGATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGCCACAATCATTATCT
CTCTAAAGTTGCAGTAGAGCAGGATAAAAATACGCAAACCTTATCTCCCTGAAGTTGCAGTAGAG
CAGAC
Found at i:67318653 original size:45 final size:45
Alignment explanation
Indices: 67318577--67318944 Score: 236
Period size: 45 Copynumber: 8.2 Consensus size: 45
67318567 GCTGTTACAA
* *
67318577 CAGTGGAGCAGACTGAAGATAGCAGATCTTATCCCCCTGAAGTTG
1 CAGTGGAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTG
* * * *
67318622 TAGTGGAGCAGACTGAAGATTGAAGACCTTATCTCCCTGAAGTTA
1 CAGTGGAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTG
** *
67318667 CAGTGGAGCAGGTTGAAG-TAGTAAG-TCTTATCTCCTTGAAGTTG
1 CAGTGGAGCAGACTGAAGATAG-AAGATCTTATCTCCCTGAAGTTG
* * * * * *
67318711 CAGTGGAGCAGACTAAAGTTAG-TGAATCTTATTTCCCTAAAGATG
1 CAGTGGAGCAGACTGAAGATAGAAG-ATCTTATCTCCCTGAAGTTG
* * ** * * * * *
67318756 TAATGGAATAGATTAAAGCCATAAATAAACAGATATTATCTCTCTGAAGTTG
1 CAGTGGAGCAGACT---G--A-AGATAGA-AGATCTTATCTCCCTGAAGTTG
* * * *
67318808 CAGTAGAGTAGA-T---CATAGCAA-ACCTTATCTCCCTGAAGTTG
1 CAGTGGAGCAGACTGAAGATAG-AAGATCTTATCTCCCTGAAGTTG
** *
67318849 CAGTGGAGCAGGTTGAAG-T-GCAAG-TCTTATCTTCCTGAAGTTG
1 CAGTGGAGCAGACTGAAGATAG-AAGATCTTATCTCCCTGAAGTTG
** * * *
67318892 CAGTGGAGCAGACCAAAGATTGAAGACCTTATCTCCCTGAAGTTA
1 CAGTGGAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTG
67318937 CAGTGGAG
1 CAGTGGAG
67318945 TAGTTGCAGT
Statistics
Matches: 244, Mismatches: 58, Indels: 42
0.71 0.17 0.12
Matches are distributed among these distances:
41 26 0.11
42 5 0.02
43 37 0.15
44 38 0.16
45 109 0.45
50 1 0.00
51 4 0.02
52 23 0.09
53 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (45 bp):
CAGTGGAGCAGACTGAAGATAGAAGATCTTATCTCCCTGAAGTTG
Found at i:67318742 original size:89 final size:91
Alignment explanation
Indices: 67318576--67318944 Score: 286
Period size: 89 Copynumber: 4.1 Consensus size: 91
67318566 GGCTGTTACA
* * * * * *
67318576 ACAGTGGAGCAGACTGAAGATAG-CAGATCTTATCCCCCTGAAGTTGTAGTGGAGCAGACTGAAG
1 ACAGTGGAGCAGATTGAAGATAGTAAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAG
67318640 ATTGAAGACCTTATCTCCCTGAAGTT
66 ATTGAAGACCTTATCTCCCTGAAGTT
*
67318666 ACAGTGGAGCAGGTTGAAG-TAGTAAG-TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAG
1 ACAGTGGAGCAGATTGAAGATAGTAAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAG
* * * *
67318729 -TT-AGTGAATCTTATTTCCCTAAAGATGT
66 ATTGA-AG-ACCTTATCTCCCTGAAG-T-T
** * * * * *
67318757 A-A-TGGAATAGATTAAAGCCATAAATAAACAGATATTATCT-CTCTGAAGTTGCAGTAGAGTAG
1 ACAGTGGAGCAGATTGAAG--AT-AGT--A-AGATCTTATCTCCT-TGAAGTTGCAGTGGAGCAG
* *
67318819 A-TCATAG---CAA-ACCTTATCTCCCTGAAGTT
59 ACT-AAAGATTGAAGACCTTATCTCCCTGAAGTT
* * * *
67318848 GCAGTGGAGCAGGTTGAAG-T-GCAAG-TCTTATCTTCC-TGAAGTTGCAGTGGAGCAGACCAAA
1 ACAGTGGAGCAGATTGAAGATAGTAAGATCTTATC-TCCTTGAAGTTGCAGTGGAGCAGACTAAA
67318909 GATTGAAGACCTTATCTCCCTGAAGTT
65 GATTGAAGACCTTATCTCCCTGAAGTT
67318936 ACAGTGGAG
1 ACAGTGGAG
67318945 TAGTTGCAGT
Statistics
Matches: 216, Mismatches: 38, Indels: 52
0.71 0.12 0.17
Matches are distributed among these distances:
84 27 0.12
85 3 0.01
86 2 0.01
87 3 0.01
88 30 0.14
89 61 0.28
90 22 0.10
91 3 0.01
92 3 0.01
93 27 0.12
95 1 0.00
96 6 0.03
97 28 0.13
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (91 bp):
ACAGTGGAGCAGATTGAAGATAGTAAGATCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAAG
ATTGAAGACCTTATCTCCCTGAAGTT
Found at i:67318962 original size:45 final size:43
Alignment explanation
Indices: 67318791--67318952 Score: 127
Period size: 43 Copynumber: 3.8 Consensus size: 43
67318781 TAAACAGATA
* * * *
67318791 TTATCTCTCTGAAGTTGCAGTAGAGTAGAT-CATAGCAA-ACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGTTGCATAGCAAGACC
* *
67318832 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT-GCAAG-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGCA-GTTGCA-TAGCAAGACC
* ** * *
67318875 TTATCTTCCTGAAGTTGCAGTGGAGCAG-ACCAAAGATTGAAGACC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGTTGCATAG---CAAGACC
* *
67318920 TTATCTCCCTGAAGTTACAGTGGAGTAGTTGCA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGTTGCA
67318953 GTAGAGAAGA
Statistics
Matches: 93, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
41 26 0.28
42 3 0.03
43 32 0.34
44 4 0.04
45 26 0.28
46 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGTTGCATAGCAAGACC
Found at i:67320634 original size:4 final size:4
Alignment explanation
Indices: 67320625--67320654 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
67320615 TATGTTCATA
67320625 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
67320655 TGGAATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:67320743 original size:2 final size:2
Alignment explanation
Indices: 67320736--67320770 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
67320726 CTTATTTTAT
* *
67320736 TA TA TA TA TA TA TT TA TA TA TA TT TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67320771 TTGACATCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (2 bp):
TA
Found at i:67320755 original size:10 final size:10
Alignment explanation
Indices: 67320728--67320768 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
67320718 TTAAAGATCT
67320728 TATTT-TAT-
1 TATTTATATA
*
67320736 TATATATATA
1 TATTTATATA
67320746 TATTTATATA
1 TATTTATATA
67320756 TATTTATATA
1 TATTTATATA
67320766 TAT
1 TAT
67320769 ATTTGACATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 4 0.14
9 3 0.10
10 22 0.76
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TATTTATATA
Found at i:67327481 original size:2 final size:2
Alignment explanation
Indices: 67327474--67327513 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
67327464 TTCAGCCTAT
67327474 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67327514 CTAGCTGATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67328032 original size:2 final size:2
Alignment explanation
Indices: 67328025--67328051 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67328015 ATGATTTGTG
67328025 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
67328052 AGTTAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67330268 original size:25 final size:25
Alignment explanation
Indices: 67330238--67330288 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
67330228 CACCCCGAGC
67330238 ATGAACATAGCATCTATTAGCCATG
1 ATGAACATAGCATCTATTAGCCATG
67330263 ATGAACATAGCATCTATTAGCCATG
1 ATGAACATAGCATCTATTAGCCATG
67330288 A
1 A
67330289 ACTCAAGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (25 bp):
ATGAACATAGCATCTATTAGCCATG
Found at i:67330442 original size:29 final size:27
Alignment explanation
Indices: 67330408--67330510 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
67330398 TACTCAATCA
*
67330408 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
67330437 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
67330466 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
67330495 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
67330511 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:67337541 original size:42 final size:42
Alignment explanation
Indices: 67337489--67337575 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
67337479 AGACACGTGA
*
67337489 CTTCAATCAATTTCACTAAAACTTCAAGGAGATCTGCTGTAG
1 CTTCAATCAATTCCACTAAAACTTCAAGGAGATCTGCTGTAG
* * *
67337531 CTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGG
1 CTTCAATCAATTCCACTAAAACTTCAAGGAGATCTGCTGTAG
67337573 CTT
1 CTT
67337576 TTAGCTGCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (42 bp):
CTTCAATCAATTCCACTAAAACTTCAAGGAGATCTGCTGTAG
Found at i:67338286 original size:43 final size:44
Alignment explanation
Indices: 67338219--67338305 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
67338209 GGAGACGAAA
* *
67338219 TCTGTAATTTTCAGCCTATTACCCTACTACTTAGGGGGTTAAGG
1 TCTGTAAATTTCAACCTATTACCCTACTACTTAGGGGGTTAAGG
* * *
67338263 TCTGTAAATTT-AACCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 TCTGTAAATTTCAACCTATTACCCTACTACTTAGGGGGTTAAGG
67338306 CTTGGTGAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
43 28 0.74
44 10 0.26
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.37
Consensus pattern (44 bp):
TCTGTAAATTTCAACCTATTACCCTACTACTTAGGGGGTTAAGG
Found at i:67343599 original size:27 final size:27
Alignment explanation
Indices: 67343569--67343624 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
67343559 AAAAAAACCT
67343569 AACCCAA-AAAAAAAAAGAAAAAAGAAA
1 AACCCAACAAAAAAAAA-AAAAAAGAAA
* **
67343596 AACCTAACCCAAAAAAAAAAAAAGAAA
1 AACCCAACAAAAAAAAAAAAAAAGAAA
67343623 AA
1 AA
67343625 AGAAAAACCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.79, C:0.14, G:0.05, T:0.02
Consensus pattern (27 bp):
AACCCAACAAAAAAAAAAAAAAAGAAA
Found at i:67343657 original size:32 final size:32
Alignment explanation
Indices: 67343561--67343649 Score: 160
Period size: 34 Copynumber: 2.7 Consensus size: 32
67343551 AACCCCCCAA
67343561 AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
67343593 AAAAACCTAACCCAAAAAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCC--AAAAAAAAAAAGAAAAAAG
67343627 AAAAACCTAACCCAAAAAAAAAA
1 AAAAACCTAACCCAAAAAAAAAA
67343650 CTAAAAAAAC
Statistics
Matches: 55, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
32 23 0.42
34 32 0.58
ACGTcount: A:0.75, C:0.17, G:0.04, T:0.03
Consensus pattern (32 bp):
AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
Found at i:67343658 original size:34 final size:32
Alignment explanation
Indices: 67343561--67343658 Score: 151
Period size: 33 Copynumber: 3.0 Consensus size: 32
67343551 AACCCCCCAA
*
67343561 AAAAACCTAACCCAAAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAAAAAAAAG
67343593 AAAAACCTAACCCAAAAAAAAAAAAAGAAAAAAG
1 AAAAACCTAACCC-AAAAAAAAAAAA-AAAAAAG
*
67343627 AAAAACCTAACCCAAAAAAAAAACTAAAAAAA
1 AAAAACCTAACCCAAAAAAAAAA-AAAAAAAA
67343659 CCCTAGCCAC
Statistics
Matches: 61, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
32 13 0.21
33 27 0.44
34 21 0.34
ACGTcount: A:0.76, C:0.16, G:0.04, T:0.04
Consensus pattern (32 bp):
AAAAACCTAACCCAAAAAAAAAAAAAAAAAAG
Found at i:67344464 original size:37 final size:37
Alignment explanation
Indices: 67344422--67344523 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
67344412 CTAATATTTT
67344422 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
67344459 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
67344502 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
67344524 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:67346208 original size:19 final size:19
Alignment explanation
Indices: 67346184--67346229 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
67346174 TCATGACTGA
67346184 CATTCATTTA-ACATTCAT
1 CATTCATTTATACATTCAT
*
67346202 GCATTCATTTATGCATTCAT
1 -CATTCATTTATACATTCAT
67346222 CATTCATT
1 CATTCATT
67346230 GCATATTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.22, G:0.04, T:0.46
Consensus pattern (19 bp):
CATTCATTTATACATTCAT
Found at i:67353244 original size:73 final size:71
Alignment explanation
Indices: 67353055--67353244 Score: 254
Period size: 72 Copynumber: 2.6 Consensus size: 71
67353045 AAGCCTTTTT
* * * *
67353055 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGT
1 ATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGATGAGGT
*
67353120 ATTTTCA
65 AATTTCA
* **
67353127 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGATGAGGT
1 ATTTTTGT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGATGAGGT
67353192 AATTTCA
65 AATTTCA
* *
67353199 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 ATTTTTGTTT-TCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
67353245 ACTTTTAATT
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
71 3 0.03
72 72 0.71
73 27 0.26
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGATGAGGTA
ATTTCA
Found at i:67353255 original size:125 final size:122
Alignment explanation
Indices: 67353121--67353484 Score: 397
Period size: 125 Copynumber: 3.0 Consensus size: 122
67353111 CGCTGAGGTA
**
67353121 TTTTCAATTTTTGTGTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
1 TTTT-AATTTTTGT-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
* *
67353185 ATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-C
64 CTGAGGTAATTTCAATTT-TGTTT-T-AA-AATCAACTCATATTGCGAGAGGTGAGTTGAACC
** * *
67353247 TTTTAATTTCTACTTTTTCAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGC
1 TTTTAATTT-TTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
* **
67353311 TGAGGT-A-TT---TTTAGTTTT-AAATTGACTCATATTGCGAGAGGTGAGTT-AAGCC
65 TGAGGTAATTTCAATTTTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAA-CC
* * * *
67353363 TTTTTATTTTTGTTTTTCAAAATCAACTCATATTTCTAGAGGTGAGTTGAGCCTCAGGTCACGCT
1 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
* **
67353428 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGA
66 GAGGTAATTTCAA--TTT-TGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGA
67353485 GCCTCAGGAC
Statistics
Matches: 198, Mismatches: 25, Indels: 30
0.78 0.10 0.12
Matches are distributed among these distances:
114 2 0.01
115 46 0.23
116 42 0.21
118 3 0.02
119 4 0.02
120 3 0.02
123 5 0.03
124 6 0.03
125 68 0.34
126 19 0.10
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.38
Consensus pattern (122 bp):
TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTAATTTCAATTTTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAACC
Found at i:67353461 original size:72 final size:72
Alignment explanation
Indices: 67353368--67353590 Score: 268
Period size: 72 Copynumber: 3.1 Consensus size: 72
67353358 AAGCCTTTTT
* *
67353368 ATTTTTGT-TTTTCAAAATCAACTCATATTTCTAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGG
1 ATTTTTGTGTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGG
67353432 TATTTTCA
65 TATTTTCA
** * *
67353440 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGT
1 ATTTTTGTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGT
*
67353505 AATTTCA
66 ATTTTCA
* *** * * * *
67353512 ATTTCTGTTGTCAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGA
1 ATTTTTG-TGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCTGA
67353577 GGTATTTTCA
63 GGTATTTTCA
67353587 ATTT
1 ATTT
67353591 CCGTTTTTCA
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
72 66 0.52
73 42 0.33
75 19 0.15
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.35
Consensus pattern (72 bp):
ATTTTTGTGTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGT
ATTTTCA
Found at i:67353535 original size:313 final size:314
Alignment explanation
Indices: 67352947--67353546 Score: 1114
Period size: 313 Copynumber: 1.9 Consensus size: 314
67352937 TTAATTGTTG
67352947 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTTAG
67353012 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
67353077 TCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
131 TCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
*
67353142 TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGATGAGGTAATTTCAATTTCTGT
196 TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGT
*
67353207 TTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACTTTTAATTTCTACT
261 TTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACTTTTAATTTCTACT
*
67353261 TTTTCAAAATCAACTCATA-TGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTTAG
67353325 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
* *
67353390 TCATATTTCTAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
131 TCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
*
67353455 TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTG-
196 TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGT
*
67353519 TTGTCAAAAAATCAACTCGTATTGCGAG
261 TTGTC-AAAAATCAACTCATATTGCGAG
67353547 CGGCGAGTTG
Statistics
Matches: 278, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
312 5 0.02
313 254 0.91
314 19 0.07
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.36
Consensus pattern (314 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTAAGGTATTTTTAG
TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
TCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCTGT
TTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACTTTTAATTTCTACT
Found at i:67353661 original size:90 final size:87
Alignment explanation
Indices: 67353507--67353679 Score: 231
Period size: 90 Copynumber: 2.0 Consensus size: 87
67353497 GTTGAGGTAA
* *
67353507 TTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACAC
1 TTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACAC
* *
67353572 GCCGAGGTATTTTCAATTTCCGTT
64 ACCGAGGTAATTTCAATTTCCGTT
** *
67353596 TTTCAATTTCTGCCTT-TCAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAATTTCTG--TTGTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACAC
*
67353660 ACTGAGGTAATTTCAATTTC
64 ACCGAGGTAATTTCAATTTC
67353680 TGTTGTCAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
88 21 0.28
89 12 0.16
90 39 0.53
91 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (87 bp):
TTTCAATTTCTGTTGTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACAC
CGAGGTAATTTCAATTTCCGTT
Found at i:67353735 original size:74 final size:74
Alignment explanation
Indices: 67353596--67354486 Score: 471
Period size: 72 Copynumber: 11.8 Consensus size: 74
67353586 AATTTCCGTT
** *
67353596 TTTCAATTTCTGCCTTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACA
1 TTTCAATTTCTG-CTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACA
*
67353661 -CTGAGGTAA
65 CCCGAGGTAA
* * * * *
67353670 TTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTTATGTCAC
1 TTTCAATTTCTGCTT-TC-AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACAC
*
67353734 ACGCCGAGGTAT
64 AC-CCGAGGTAA
* * * ** * *
67353746 TTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAA--AAATCA-ACTCATATGCGAGAGGTGAG
1 TTTCAATTTCTG-CTTTCAA------------AAAATCAACTCATA-T--TGCGAGAG--GCGAG
* *
67353808 TGGAGCCTCAGGACACA-CTGAGGTAA
48 TTGAGCCTCAGGACACACCCGAGGTAA
*** *
67353834 TTTCAATTTCTG-TTGTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA-
1 TTTCAATTTCTGCTT-TC---AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
* * *
67353897 A-ATGCTGAGGTAT
62 ACA-CCCGAGGTAA
* * *
67353910 TTTTAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GATCA
1 TTTCAATTTCTG-CTTTC-AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA-CA
* *
67353973 CACACTGAGGTATTTTTT
63 CAC-CCGAGGTA-----A
* ** * *
67353991 TTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC-
1 TTTCAATTTCT-GCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACA
* *
67354054 GCTGAGGTAA
65 CCCGAGGTAA
* * * *
67354064 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC-G
1 TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACAC
*
67354127 CTGAGGTAA
66 CCGAGGTAA
** * *** * *
67354136 TTTCAA--TCTG-TTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC-G
1 TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACAC
*
67354197 CTGAGGTAA
66 CCGAGGTAA
* * * *** * * *
67354206 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAACCTCAAGACAC-G
1 TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACAC
**
67354269 TTGAGGTAA
66 CCGAGGTAA
* * *** * **
67354278 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA-TG
1 TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACAC
** *
67354341 TTGAGGTAT
66 CCGAGGTAA
* * * * *
67354350 TTTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTTCAATTTCTGCTTTC--AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-ACA
* * *
67354414 CATGCTGAGGTAT
63 CA-CCCGAGGTAA
* *
67354427 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTCAATTTCTG-CTTTC-AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG
67354487 ATCACACACT
Statistics
Matches: 684, Mismatches: 74, Indels: 114
0.78 0.08 0.13
Matches are distributed among these distances:
69 3 0.00
70 60 0.09
72 209 0.31
73 17 0.02
74 91 0.13
75 39 0.06
76 62 0.09
77 62 0.09
78 23 0.03
80 46 0.07
81 12 0.02
82 5 0.01
85 1 0.00
86 7 0.01
87 2 0.00
88 26 0.04
90 19 0.03
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (74 bp):
TTTCAATTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACAC
CCGAGGTAA
Found at i:67353758 original size:164 final size:165
Alignment explanation
Indices: 67353457--67353876 Score: 729
Period size: 164 Copynumber: 2.6 Consensus size: 165
67353447 TGTTTTAATT
**
67353457 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTTG
67353522 TC-AAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
66 TCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
67353586 AATTTCCGTTTTTCAATTTCTGCCTTTC-AAAAAA
131 AATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
**
67353620 TTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTTG
* *
67353685 TCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTTATGTCACACGCCGAGGTATTTTC
66 TCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
67353750 AATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
131 AATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
*
67353785 TCAACTCATA-TGCGAGAGGTGAGTGGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTTG
*
67353849 TCAAAAAAAAATCAACTCATATTGCGAG
66 TC--AAAAAAATCAACTCGTATTGCGAG
67353877 AAATGAGTTG
Statistics
Matches: 243, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
163 63 0.26
164 143 0.59
165 14 0.06
166 23 0.09
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (165 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTGTTG
TCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
AATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
Found at i:67353825 original size:90 final size:88
Alignment explanation
Indices: 67353670--67353843 Score: 217
Period size: 90 Copynumber: 2.0 Consensus size: 88
67353660 ACTGAGGTAA
* * * * *
67353670 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTTATGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTGGAGCCTCA-G-GACA
* *
67353735 CGCCGAGGTATTTTCAATTTCCGTT
64 CACCGAGGTAATTTCAATTTCCGTT
*
67353760 TTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATA-TGCGAGAGGTGAGTGGAGCCTCAGGACA
1 TTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTGGAGCCTCAGGACA
*
67353823 CACTGAGGTAATTTCAATTTC
64 CACCGAGGTAATTTCAATTTC
67353844 TGTTGTCAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
88 21 0.29
89 1 0.01
90 31 0.42
91 18 0.25
92 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (88 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTGGAGCCTCAGGACACA
CCGAGGTAATTTCAATTTCCGTT
Found at i:67354109 original size:72 final size:73
Alignment explanation
Indices: 67353760--67354481 Score: 798
Period size: 72 Copynumber: 9.7 Consensus size: 73
67353750 AATTTCCGTT
* * *
67353760 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATA-TGCGAGAGGTGAGTGGAGCCTCAGGACAC
1 TTTCAATTTCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
*
67353824 ACTGAGGTAA
64 GCTGAGGTAA
* ** *
67353834 TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAAA
1 TTTCAATTTCTGTTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* *
67353899 TGCTGAGGTAT
63 CGCTGAGGTAA
* * *
67353910 TTTTAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
1 TTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-GAC
* *
67353974 ACACTGAGGTATTTTTT
62 ACGCTGAGGTA-----A
* * **
67353991 TTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
1 TTTCAATTTCT-GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
67354055 CTGAGGTAA
65 CTGAGGTAA
**
67354064 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
67354128 TGAGGTAA
66 TGAGGTAA
* * **
67354136 TTTCAA--TCTGTTTT-TAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGC
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
67354198 TGAGGTAA
66 TGAGGTAA
* * ** * *
67354206 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAACCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
67354270 TGAGGTAA
66 TGAGGTAA
* ** * *
67354278 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
*
67354342 TGAGGTAT
66 TGAGGTAA
* * *
67354350 TTTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTTCAATTTCTGTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---A
* *
67354414 CATGCTGAGGTAT
61 CACGCTGAGGTAA
67354427 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
67354482 TTCAGATCAC
Statistics
Matches: 574, Mismatches: 50, Indels: 45
0.86 0.07 0.07
Matches are distributed among these distances:
70 64 0.11
72 211 0.37
73 13 0.02
74 51 0.09
75 54 0.09
76 52 0.09
77 61 0.11
78 16 0.03
80 37 0.06
81 9 0.02
82 5 0.01
83 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC
TGAGGTAA
Found at i:67354183 original size:142 final size:144
Alignment explanation
Indices: 67353760--67354481 Score: 779
Period size: 142 Copynumber: 4.9 Consensus size: 144
67353750 AATTTCCGTT
* * *
67353760 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATA-TGCGAGAGGTGAGTGGAGCCTCAGGACAC
1 TTTCAATTTCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
* *
67353824 ACTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
64 GCTGAGGTAATTTCAA-TTCTGTT-T---TAAAAAATCAACTCATATTGCGAGAAATGAGTTGAG
* * *
67353889 CCTCAAGAAATGCTGAGGTAT
124 CCTCAAGACACGCTGAGGTAA
* * **
67353910 TTTTAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
1 TTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGAC
* * * * * **
67353974 ACACTGAGGTATTTTTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
62 ACGCTGAGGTA-----ATTTCAA-TTCT-GTTTTAAAAAATCAACTCATATTGCGAGAAATGAGT
**
67354039 TGAGCCTCGGGACACGCTGAGGTAA
120 TGAGCCTCAAGACACGCTGAGGTAA
67354064 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
* *
67354128 TGAGGTAATTTCAA-TCTGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
66 TGAGGTAATTTCAATTCTGTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
67354192 ACACGCTGAGGTAA
131 ACACGCTGAGGTAA
* * ** * ** *
67354206 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAACCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
* *
67354270 TGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
66 TGAGGTAATTTCAA-TTCTGTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
* * *
67354335 GACATGTTGAGGTAT
130 GACACGCTGAGGTAA
* * *
67354350 TTTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTCGGTTCAC
1 TTTCAATTTCTGTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GAC
* * **
67354415 ATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
62 ACGCTGAGGTAATTTCAA-TTCTGT-TTT--AAAAAATCAACTCATATTGCGAGAAATGAGTTGA
67354480 GC
123 GC
67354482 TTCAGATCAC
Statistics
Matches: 489, Mismatches: 62, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
142 124 0.25
143 2 0.00
144 77 0.16
145 6 0.01
147 31 0.06
149 47 0.10
150 43 0.09
151 1 0.00
152 82 0.17
154 60 0.12
155 3 0.01
157 11 0.02
158 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (144 bp):
TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
TGAGGTAATTTCAATTCTGTTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
ACACGCTGAGGTAA
Found at i:67354311 original size:214 final size:217
Alignment explanation
Indices: 67353759--67354486 Score: 856
Period size: 214 Copynumber: 3.3 Consensus size: 217
67353749 CAATTTCCGT
* *
67353759 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATA-TGCGAGAGGTGAGTGGAGCCTCAGGACA
1 TTTTCAATTTCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
67353823 CACTGAGGTAATTTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
64 CGCTGAGGTAATTTCAATTTCTGTTTTC----AAAAATCAACTCATATTGCGAGAAATGAGTTGA
* * *
67353888 GCCTCAAGAAATGCTGAGGTATTTTTAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAG
125 GCCTCAAGACATGCTGAGGTATTTTCAATTCTGT-TTT-AAAAAAATCAACTCATATTGCGAGAG
* * *
67353953 GTGAGTTGAGCTTCAGATCACACACTGAGGTA
188 GTGAGTTGAGCCTCA-A-GACACGCTGAGGTA
* * *
67353985 TTTTTTTTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 -----TTTTCAATTTCT-GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
**
67354049 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
60 GACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGA
** * * * * **
67354114 GCCTCGGGACACGCTGAGGTAATTTCAA-TCTGTTTT-TAAAATTCAACTCATATTGCGAGAAAT
125 GCCTCAAGACATGCTGAGGTATTTTCAATTCTGTTTTAAAAAAATCAACTCATATTGCGAGAGGT
67354177 GAGTTGAGCCTCAAGACACGCTGAGGTA
190 GAGTTGAGCCTCAAGACACGCTGAGGTA
* * * ** * *
67354205 ATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTACGAGAAATGAGTTGAACCTCAAGACACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
67354269 TTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 CTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * *
67354334 AGACATGTTGAGGTATTTTCAATTTCTGTTTTCAAAAAAAATCAACTTATATTGCAAGAGGTGAG
131 AGACATGCTGAGGTATTTTCAA-TTCTGTTTT--AAAAAAATCAACTCATATTGCGAGAGGTGAG
* *
67354399 TTGAGCCTC-GGTTCACATGCTGAGGTA
193 TTGAGCCTCAAG---ACACGCTGAGGTA
*
67354426 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
67354487 ATCACACACT
Statistics
Matches: 426, Mismatches: 58, Indels: 33
0.82 0.11 0.06
Matches are distributed among these distances:
214 122 0.29
215 10 0.02
216 8 0.02
218 1 0.00
219 33 0.08
220 12 0.03
221 26 0.06
222 39 0.09
224 36 0.08
225 4 0.01
226 53 0.12
229 15 0.04
230 52 0.12
231 15 0.04
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (217 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACATGCTGAGGTATTTTCAATTCTGTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCCTCAAGACACGCTGAGGTA
Found at i:67355389 original size:30 final size:30
Alignment explanation
Indices: 67355349--67355445 Score: 108
Period size: 37 Copynumber: 3.1 Consensus size: 30
67355339 TAACCCCCCC
*
67355349 AAAA-AAAAACCTTACCCAAAAAAAAAGAA
1 AAAAGAAAAACCTAACCCAAAAAAAAAGAA
67355378 AAAAGAAAAACCTAACCCCCAAAAAAAAAAAGAAGAA
1 AAAAGAAAAACCTAA--CCC----AAAAAAA-AAGAA
67355415 AAAAGAAAAACCTAACCCAAAAAAAAA-AA
1 AAAAGAAAAACCTAACCCAAAAAAAAAGAA
67355444 AA
1 AA
67355446 CTAAAAAACC
Statistics
Matches: 59, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
29 8 0.14
30 11 0.19
31 7 0.12
32 3 0.05
35 3 0.05
36 7 0.12
37 20 0.34
ACGTcount: A:0.73, C:0.18, G:0.05, T:0.04
Consensus pattern (30 bp):
AAAAGAAAAACCTAACCCAAAAAAAAAGAA
Found at i:67355418 original size:31 final size:31
Alignment explanation
Indices: 67355352--67355445 Score: 102
Period size: 34 Copynumber: 2.9 Consensus size: 31
67355342 CCCCCCCAAA
*
67355352 AAAAAACCTTACCCAAAAAAAAAGAAAAAAG
1 AAAAAACCTAACCCAAAAAAAAAGAAAAAAG
*
67355383 -AAAAACCTAACCCCCAAAAAAAAAAAGAAGAAAAA
1 AAAAAACCTAA--CCC--AAAAAAAAAGAA-AAAAG
67355418 AGAAAAACCTAACCCAAAAAAAAA-AAAA
1 A-AAAAACCTAACCCAAAAAAAAAGAAAA
67355446 CTAAAAAACC
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
30 9 0.17
31 2 0.04
32 5 0.09
33 9 0.17
34 12 0.22
35 7 0.13
37 10 0.19
ACGTcount: A:0.72, C:0.18, G:0.05, T:0.04
Consensus pattern (31 bp):
AAAAAACCTAACCCAAAAAAAAAGAAAAAAG
Found at i:67355453 original size:35 final size:35
Alignment explanation
Indices: 67355366--67355445 Score: 135
Period size: 37 Copynumber: 2.3 Consensus size: 35
67355356 AACCTTACCC
67355366 AAAAAAAAAGAAAAAAGAAAAACCTAACCCCCAAAA
1 AAAAAAAAAGAAAAAAGAAAAACCTAA-CCCCAAAA
67355402 AAAAAAAGAAGAAAAAAGAAAAACCTAA-CCCAAAA
1 AAAAAAA-AAGAAAAAAGAAAAACCTAACCCCAAAA
67355437 AAAAAAAAA
1 AAAAAAAAA
67355446 CTAAAAAACC
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
34 2 0.05
35 14 0.33
36 7 0.16
37 20 0.47
ACGTcount: A:0.76, C:0.15, G:0.06, T:0.03
Consensus pattern (35 bp):
AAAAAAAAAGAAAAAAGAAAAACCTAACCCCAAAA
Found at i:67364284 original size:3 final size:3
Alignment explanation
Indices: 67364276--67364308 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
67364266 GTATTTGTAT
67364276 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
67364309 CATAGATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67364457 original size:2 final size:2
Alignment explanation
Indices: 67364452--67364480 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
67364442 TATATACGCG
67364452 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67364481 TGAAGATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67370394 original size:27 final size:26
Alignment explanation
Indices: 67370364--67370432 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
67370354 ATAGTGTAAG
67370364 ACAATTTAAAATAAATAATATGTA-AAA
1 ACAATTTAAAATAAATAATA--TACAAA
* *
67370391 ACAATTTGAAATAAACAATATACAAA
1 ACAATTTAAAATAAATAATATACAAA
67370417 ACAATTTAAAATAAAT
1 ACAATTTAAAATAAAT
67370433 GATACATATG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.05
26 17 0.46
27 18 0.49
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (26 bp):
ACAATTTAAAATAAATAATATACAAA
Found at i:67371777 original size:2 final size:2
Alignment explanation
Indices: 67371770--67371794 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
67371760 TACAATTATT
67371770 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
67371795 TAAATAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67372665 original size:28 final size:28
Alignment explanation
Indices: 67372630--67372689 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
67372620 TTTTACTTTA
*
67372630 ATTAATTTTCAA-TTACTTAAAAATAAT
1 ATTAAATTTCAATTTACTTAAAAATAAT
* *
67372657 ATTAAATTTGAATTTACTTAAAATTAAT
1 ATTAAATTTCAATTTACTTAAAAATAAT
67372685 ATTAA
1 ATTAA
67372690 GAACCAAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 10 0.34
28 19 0.66
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (28 bp):
ATTAAATTTCAATTTACTTAAAAATAAT
Found at i:67375392 original size:3 final size:3
Alignment explanation
Indices: 67375378--67375745 Score: 307
Period size: 3 Copynumber: 120.3 Consensus size: 3
67375368 ATTAATTTAC
*
67375378 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TACT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * * * *
67375423 TAC TAT TAC TAT TAC TAT TAT TTT CTAT TAT TAC TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * *
67375469 TAT CT-T CAT TAT TAT TAC TAT TAT TGTT TAT TAT TAT TAT T-T ATAT
1 TAT -TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT -TAT
* * *
67375515 TAT TGT TAT TAT TAT TAT TCCT TAT T-T TAT TAT TAT TAT TAT TTT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
* *
67375560 CTAT TAT TAT TAC TAT TAT TAT TAAT GTAT TAT TAT TTT TA- TATT TAT
1 -TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TA-T TAT
* * * * * * *
67375608 TTT TAT TAC TAT TAT CAT TAT CAT TAT TAT TAT TAT TAC TAT TGT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
67375656 TTT TAC TAT TAT TAT T-T CGTAT CAT TAT TGT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT --TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
67375702 TAT TTT TAC TATT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
67375746 GTTGTTGTTT
Statistics
Matches: 289, Mismatches: 57, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
2 8 0.03
3 258 0.89
4 21 0.07
5 2 0.01
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:67375843 original size:29 final size:29
Alignment explanation
Indices: 67375811--67375892 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
67375801 TAATACCTTA
*
67375811 TTTATTTGTTTATTTTTTTATTTTAAAAT
1 TTTATTTGATTATTTTTTTATTTTAAAAT
* * ** *
67375840 TTTATTTGCTTATTTATTTATTCTTTTAGT
1 TTTATTTGATTATTTTTTTATT-TTAAAAT
*
67375870 TTTATTT-ATTATTTTTTTCTTTT
1 TTTATTTGATTATTTTTTTATTTT
67375893 TACCAGCTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
28 2 0.05
29 31 0.70
30 11 0.25
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.74
Consensus pattern (29 bp):
TTTATTTGATTATTTTTTTATTTTAAAAT
Found at i:67377245 original size:126 final size:126
Alignment explanation
Indices: 67377089--67377332 Score: 416
Period size: 126 Copynumber: 1.9 Consensus size: 126
67377079 GTTTTAGCCT
***
67377089 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGTGAAATTTAGTACATTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGTGAAACCCAGTACATTAGGGCACGATT
* *
67377154 TTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTAAGAGTGAACTGG
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTAAGAGTGAACTGG
* *
67377215 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGTGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGTGAAACCCAGTACATTAGGGCACGATT
*
67377280 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTAAGAG
67377333 AAGATCAATG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 110 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGTGAAACCCAGTACATTAGGGCACGATT
CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTAAGAGTGAACTGG
Found at i:67377452 original size:13 final size:14
Alignment explanation
Indices: 67377431--67377481 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 14
67377421 CTAACCATAT
*
67377431 ATAAATAATAAATA
1 ATAATTAATAAATA
67377445 ATAA-TAAT-AATA
1 ATAATTAATAAATA
* *
67377457 GTAATTAATAGA-A
1 ATAATTAATAAATA
67377470 ATAATTAATAAA
1 ATAATTAATAAA
67377482 ACAACAGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 7 0.23
13 19 0.61
14 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (14 bp):
ATAATTAATAAATA
Found at i:67377580 original size:21 final size:21
Alignment explanation
Indices: 67377546--67377596 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
67377536 TAATAATATT
*
67377546 AAAAACATGATGATAATAACA
1 AAAAATATGATGATAATAACA
* *
67377567 AAAAATATGTTGATGATAACA
1 AAAAATATGATGATAATAACA
**
67377588 TTAAATATG
1 AAAAATATG
67377597 GGGGATAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (21 bp):
AAAAATATGATGATAATAACA
Found at i:67377815 original size:19 final size:18
Alignment explanation
Indices: 67377786--67377821 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
67377776 ATATATTTTT
67377786 TAAATATATAATAATAAA
1 TAAATATATAATAATAAA
67377804 TAAATAATATAATAATAA
1 TAAAT-ATATAATAATAA
67377822 GAAACATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATATATAATAATAAA
Found at i:67378231 original size:18 final size:18
Alignment explanation
Indices: 67378208--67378243 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
67378198 ATAACAAATA
*
67378208 GGGTGATGGAGTTAGTGG
1 GGGTGATGGAGGTAGTGG
67378226 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
67378244 ATGGTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.58, T:0.25
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:67378279 original size:29 final size:29
Alignment explanation
Indices: 67378226--67378288 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
67378216 GAGTTAGTGG
*
67378226 GGGTGATGGAGGTAGTGGATGGTTTAGTA
1 GGGTGATGGAGGTAGTGGATAGTTTAGTA
* *
67378255 GGGTGATGGAGTTAGTGG-TCAGTTTAGTG
1 GGGTGATGGAGGTAGTGGAT-AGTTTAGTA
67378284 GGGTG
1 GGGTG
67378289 TTTAATTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.17, C:0.02, G:0.49, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGATAGTTTAGTA
Found at i:67378671 original size:84 final size:84
Alignment explanation
Indices: 67378526--67378827 Score: 450
Period size: 85 Copynumber: 3.6 Consensus size: 84
67378516 AACGAAGATA
* *
67378526 AGATCTG-CAATTTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
1 AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
67378590 CACCACTGCTCGAG-GAGCC
66 CACCACTGCTCG-GCGAGCC
* * *
67378609 AGGATCTGTAAATTTTAGTCTGTTACCCTACTACTTA-GGGGTTAAGGCGAGTCTTTGACCTGCT
1 A-GATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
67378673 CCACCACTGCTCGGCGAGCCC
65 CCACCACTGCTCGGCGAG-CC
**
67378694 A-AGTCTGTAAACGTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
1 AGA-TCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCT
*
67378758 CCGCCACTGCTCGGCGAGCC
65 CCACCACTGCTCGGCGAGCC
*
67378778 TAGATTTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
1 -AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCG
67378828 TGTATCCTTG
Statistics
Matches: 197, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
83 3 0.02
84 79 0.40
85 114 0.58
86 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.25, T:0.29
Consensus pattern (84 bp):
AGATCTGTAAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGACCTGCTC
CACCACTGCTCGGCGAGCC
Found at i:67378900 original size:44 final size:44
Alignment explanation
Indices: 67378848--67379079 Score: 181
Period size: 44 Copynumber: 5.3 Consensus size: 44
67378838 ATCTGCTCCA
*
67378848 CTATTGCTTAGGGAGATAAGATCTATAATCTTTAGCTTGTTACC
1 CTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCTTGTTACC
* * * *
67378892 CTATTGCTTAGGGAGTTAA-AGCGTGT-ATCTTT-GATCTGCT-CC
1 CTATTGCTTAGGGAGATAAGATC-TGTAATCTTTAGCT-TGTTACC
* *
67378934 ACTATTACTTAGGGAGATAAGATCTGTAATCTTCAGCTTGTTACC
1 -CTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCTTGTTACC
* * ** * * *
67378979 CTATTGCTTAGGGAGTTAA-AGCCTGTTGTTTTTTA-TTTG-TCCC
1 CTATTGCTTAGGGAGATAAGA-TCTG-TAATCTTTAGCTTGTTACC
* * * * *
67379022 ACTATTGCTTAAGGAGACAAGATCTGTAGTTTTTAGCCTGTTACC
1 -CTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCTTGTTACC
*
67379067 CTACTGCTTAGGG
1 CTATTGCTTAGGG
67379080 GTTAAGACTG
Statistics
Matches: 144, Mismatches: 31, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
42 4 0.03
43 42 0.29
44 85 0.59
45 13 0.09
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (44 bp):
CTATTGCTTAGGGAGATAAGATCTGTAATCTTTAGCTTGTTACC
Found at i:67378939 original size:43 final size:44
Alignment explanation
Indices: 67378801--67379000 Score: 155
Period size: 43 Copynumber: 4.6 Consensus size: 44
67378791 TTTAGCCTGT
* * * * *
67378801 TACCCTACTGCTTAGGGGGTTAAGGCGTGT-ATCCTTGATC-TGC
1 TACCCTATTGCTTAGGGAGTTAAAGC-TGTAATCTTTGAGCTTGC
* * * *
67378844 T-CCACTATTGCTTAGGGAGATAAGATCTATAATCTTT-AGCTTGT
1 TACC-CTATTGCTTAGGGAGTTAA-AGCTGTAATCTTTGAGCTTGC
*
67378888 TACCCTATTGCTTAGGGAGTTAAAGCGTGT-ATCTTTGATC-TGC
1 TACCCTATTGCTTAGGGAGTTAAAGC-TGTAATCTTTGAGCTTGC
* * * * *
67378931 T-CCACTATTACTTAGGGAGATAAGATCTGTAATC-TTCAGCTTGT
1 TACC-CTATTGCTTAGGGAGTTAA-AGCTGTAATCTTTGAGCTTGC
67378975 TACCCTATTGCTTAGGGAGTTAAAGC
1 TACCCTATTGCTTAGGGAGTTAAAGC
67379001 CTGTTGTTTT
Statistics
Matches: 122, Mismatches: 23, Indels: 24
0.72 0.14 0.14
Matches are distributed among these distances:
42 4 0.03
43 58 0.48
44 56 0.46
45 4 0.03
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.35
Consensus pattern (44 bp):
TACCCTATTGCTTAGGGAGTTAAAGCTGTAATCTTTGAGCTTGC
Found at i:67378998 original size:87 final size:87
Alignment explanation
Indices: 67378521--67379084 Score: 426
Period size: 87 Copynumber: 6.6 Consensus size: 87
67378511 TGCTCAACGA
* * * * *
67378521 AGATAAGATCTGCAAT-TTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG--TCTTCGA
1 AGATAAGATCTGTAATCTTTAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTGA
* * * *
67378583 CCTGCTCCACCACTGC-TCGAGG
66 TCTGCTCCACTATTGCTTAG-GG
** * * * *
67378605 AGCCAGGATCTGTAAAT-TTTAG-TCTGTTACCCTACTACTTAGGG-GTTAAGGCGAG--TCTTT
1 AGATAAGATCTGT-AATCTTTAGCT-TGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTT
* * * *
67378665 GACCTGCTCCACCACTGC-TCGGCG
64 GATCTGCTCCACTATTGCTTAGG-G
** * * * * * * *
67378689 AGCCCAAG-TCTGTAAACGTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAG--TCTTCG
1 AG-ATAAGATCTGTAATCTTTAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTG
* * * * *
67378751 ACCTGCTCCGCCACTGC-TCGGCG
65 ATCTGCTCCACTATTGCTTAGG-G
* * * * * *
67378774 AGCCT-AGATTTGTAAAT-TTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGTGTATCCTT
1 AG-ATAAGATCTGT-AATCTTTAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTT
67378837 GATCTGCTCCACTATTGCTTAGGG
64 GATCTGCTCCACTATTGCTTAGGG
* *
67378861 AGATAAGATCTATAATCTTTAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCGTGTATCTTTGA
1 AGATAAGATCTGTAATCTTTAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTGA
*
67378926 TCTGCTCCACTATTACTTAGGG
66 TCTGCTCCACTATTGCTTAGGG
* * * * * *
67378948 AGATAAGATCTGTAATCTTCAGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCCTGTTGTTTTTT
1 AGATAAGATCTGTAATCTTTAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTG-TATCTTTG
* *
67379013 ATTTG-TCCCACTATTGCTTAAGG
65 ATCTGCT-CCACTATTGCTTAGGG
* * * *
67379036 AGACAAGATCTGTAGTTTTTAGCCTGTTACCCTACTGCTTAGGG-GTTAA
1 AGATAAGATCTGTAATCTTTAGCTTGTTACCCTACTGCTTAGGGAGTTAA
67379085 GACTGGTGGT
Statistics
Matches: 415, Mismatches: 49, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
83 3 0.01
84 79 0.19
85 114 0.27
86 6 0.01
87 149 0.36
88 64 0.15
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (87 bp):
AGATAAGATCTGTAATCTTTAGCTTGTTACCCTACTGCTTAGGGAGTTAAAGCGTGTATCTTTGA
TCTGCTCCACTATTGCTTAGGG
Found at i:67379277 original size:133 final size:132
Alignment explanation
Indices: 67379082--67379426 Score: 521
Period size: 133 Copynumber: 2.6 Consensus size: 132
67379072 GCTTAGGGGT
* *
67379082 TAAGACTGGTGGTTTG-AATCTGCTCCATTACCGATACATGGAGATAAGATTCGCTGAAATTTGA
1 TAAGACTGGTGG-CTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCTGAAATTTGA
*
67379146 TCTGTTCCACTCCTGCCAGTGGGATGAGATCTGTTATATTTAGCCTGTTCCACTCCTACTCAGTG
65 TCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTAGCCTGTTCCACTCCTACTCAGTG
67379211 AAGA
130 -AGA
* * * *
67379215 TAAGACTGGTGGCTGAAATCTGCTCTATTGCCGATACATAGAGACAAGATCCGCTGAAATTTGAT
1 TAAGACTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCTGAAATTTGAT
* * *
67379280 CTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTATCCTGTTCCACTCCTGCTCAGTGG
66 CTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTAGCCTGTTCCACTCCTACTCAGTGA
67379345 GA
131 GA
* * **
67379347 TAAGGCTTGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAAAATTTGAT
1 TAAGACTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCTGAAATTTGAT
* *
67379412 CTGCTCCGCTCCTGC
66 CTGTTCCACTCCTGC
67379427 TCAGCGAAGA
Statistics
Matches: 191, Mismatches: 20, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
132 74 0.39
133 117 0.61
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (132 bp):
TAAGACTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCTGAAATTTGAT
CTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTAGCCTGTTCCACTCCTACTCAGTGA
GA
Found at i:67379468 original size:178 final size:178
Alignment explanation
Indices: 67379270--67379712 Score: 701
Period size: 179 Copynumber: 2.5 Consensus size: 178
67379260 AAGATCCGCT
67379270 GAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTATCCTGTTCCACTCC
1 GAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTATCCTGTTCCACTCC
*
67379335 TGCTCAGTGGGATAAGGCTTGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCG
66 TGCTCAGTGGGATAAGGCTTGTGGCTGAAATCTGCTCCATTGCCGATACATAGAGATAAGATTCG
* *
67379400 CCAAAATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGTC
131 CCAAAATTTGATCTGCTCCGCTCCTGATCAGCAAAGATAAGATCTGTC
* * * * *
67379448 GAAATTTGATTTGCTCCACTCCAGCTAGTGGGATGAGATCTGCTATATTTAGT-CTGCTT-CGCT
1 GAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTA-TCCTG-TTCCACT
* * * *
67379511 CCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCTATTGCCGATACATAGAGGTAAGAT
64 CCTGCTCAGTG-GGATAAGGCTTGTGGCTGAAATCTGCTCCATTGCCGATACATAGAGATAAGAT
67379576 TCGCCAAAATTTGATCTGCTCCGCTCCTGATCAGCAAAGATAAGATCTGTC
128 TCGCCAAAATTTGATCTGCTCCGCTCCTGATCAGCAAAGATAAGATCTGTC
* * *
67379627 GAAATTTGATCTATTCCACTCCTGCCAGTAGGATGAGATCTGCTATATTTAGCCTGTTCCACTCC
1 GAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTATCCTGTTCCACTCC
*
67379692 TGCTCAGTGGGATAAGACTTG
66 TGCTCAGTGGGATAAGGCTTG
67379713 CCGAAATCTG
Statistics
Matches: 237, Mismatches: 23, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
178 75 0.32
179 162 0.68
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (178 bp):
GAAATTTGATCTGTTCCACTCCTGCCAGTGGGATGAGATCTGCTATATTTATCCTGTTCCACTCC
TGCTCAGTGGGATAAGGCTTGTGGCTGAAATCTGCTCCATTGCCGATACATAGAGATAAGATTCG
CCAAAATTTGATCTGCTCCGCTCCTGATCAGCAAAGATAAGATCTGTC
Found at i:67379504 original size:89 final size:89
Alignment explanation
Indices: 67379411--67379698 Score: 234
Period size: 89 Copynumber: 3.2 Consensus size: 89
67379401 CAAAATTTGA
67379411 TCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGTCGAAATTTGATTTGCTCCACTCCAGCTAG
1 TCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGTCGAAATTTGATTTGCTCCACTCCAGCTAG
*
67379476 TGGGATGAGATCTGCTATATTTAG
66 TAGGATGAGATCTGCTATATTTAG
* * * * * * *
67379500 TCTGCTTCGCTCCTGCTCAGTGAAGATAAG-GCTGGTGGCTGAAATCTGCTCTATTGC-CGA-TA
1 TCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCT-GT--C-GAAATTTG--AT-TTGCTCCACTC
* * *
67379562 CA--TAG-AGG-TAAGAT-TCGCCAAAATTT-G
59 CAGCTAGTAGGATGAGATCT-G-CTATATTTAG
* * * ** * *
67379589 ATCTGCTCCGCTCCTGATCAGCAAAGATAAGATCTGTCGAAATTTGATCTATTCCACTCCTGCCA
1 -TCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGTCGAAATTTGATTTGCTCCACTCCAGCTA
67379654 GTAGGATGAGATCTGCTATATTTAG
65 GTAGGATGAGATCTGCTATATTTAG
* * *
67379679 CCTGTTCCACTCCTGCTCAG
1 TCTGCTCCGCTCCTGCTCAG
67379699 TGGGATAAGA
Statistics
Matches: 148, Mismatches: 32, Indels: 38
0.68 0.15 0.17
Matches are distributed among these distances:
84 1 0.01
85 3 0.02
86 2 0.01
87 7 0.05
88 6 0.04
89 62 0.42
90 43 0.29
91 7 0.05
92 7 0.05
93 3 0.02
94 3 0.02
95 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (89 bp):
TCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTGTCGAAATTTGATTTGCTCCACTCCAGCTAG
TAGGATGAGATCTGCTATATTTAG
Found at i:67379616 original size:90 final size:89
Alignment explanation
Indices: 67379331--67379619 Score: 247
Period size: 89 Copynumber: 3.2 Consensus size: 89
67379321 TCCTGTTCCA
* * * * *
67379331 CTCCTGCTCAGTG-GGATAAGGCTTGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAG
1 CTCCTGCTCAGCGAAGATAAGGC-TGTGGCTGAAATCTGCTCTATTGCCGATACATAGAGGTAAG
67379395 ATTCGCCAAAATTTGATCTGCTCCG
65 ATTCGCCAAAATTTGATCTGCTCCG
* * * * * *
67379420 CTCCTGCTCAGCGAAGATAAGATCTGT--C-GAAATTTG--AT-TTGCTCCACTCCAGCTAGTGG
1 CTCCTGCTCAGCGAAGATAAG-GCTGTGGCTGAAATCTGCTCTATTGC-CGA-TACA--TAG-AG
* * * *
67379479 GATGAGA-TCTG-CTATATTT-AGTCTGCTTCG
60 G-TAAGATTC-GCCAAAATTTGA-TCTGCTCCG
*
67379509 CTCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCTATTGCCGATACATAGAGGTAAG
1 CTCCTGCTCAGCGAAGATAAGGCT-GTGGCTGAAATCTGCTCTATTGCCGATACATAGAGGTAAG
67379574 ATTCGCCAAAATTTGATCTGCTCCG
65 ATTCGCCAAAATTTGATCTGCTCCG
* *
67379599 CTCCTGATCAGCAAAGATAAG
1 CTCCTGCTCAGCGAAGATAAG
67379620 ATCTGTCGAA
Statistics
Matches: 151, Mismatches: 29, Indels: 39
0.69 0.13 0.18
Matches are distributed among these distances:
84 4 0.03
85 2 0.01
86 3 0.02
87 7 0.05
88 6 0.04
89 56 0.37
90 50 0.33
91 6 0.04
92 7 0.05
93 3 0.02
94 3 0.02
95 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (89 bp):
CTCCTGCTCAGCGAAGATAAGGCTGTGGCTGAAATCTGCTCTATTGCCGATACATAGAGGTAAGA
TTCGCCAAAATTTGATCTGCTCCG
Found at i:67381023 original size:15 final size:14
Alignment explanation
Indices: 67380993--67381042 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 14
67380983 TATTTTTTAT
67380993 TTTTCTCTTCTTTTTCC
1 TTTTC-CTT-TTTTT-C
67381010 TTTTCCTTTTTTTC
1 TTTTCCTTTTTTTC
*
67381024 TCTTTCCTTTTTCTC
1 T-TTTCCTTTTTTTC
67381039 TTTT
1 TTTT
67381043 TTTTTTTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 5 0.16
15 18 0.58
16 3 0.10
17 5 0.16
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTCCTTTTTTTC
Found at i:67381042 original size:21 final size:21
Alignment explanation
Indices: 67381000--67381043 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
67380990 TATTTTTCTC
* *
67381000 TTCTTTTTCCTTTTCCTTTTT
1 TTCTCTTTCCTTTTCCTCTTT
*
67381021 TTCTCTTTCCTTTTTCTCTTT
1 TTCTCTTTCCTTTTCCTCTTT
67381042 TT
1 TT
67381044 TTTTTTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (21 bp):
TTCTCTTTCCTTTTCCTCTTT
Found at i:67381050 original size:15 final size:15
Alignment explanation
Indices: 67380963--67381035 Score: 53
Period size: 15 Copynumber: 4.7 Consensus size: 15
67380953 TTGGCCTCTC
*
67380963 CTTTGCTTTTCTTT-T
1 CTTTCCTTTT-TTTCT
*
67380978 CTTT-CTATTTTTTAT
1 CTTTCCT-TTTTTTCT
*
67380993 TTTTCTCTTCTTTTTC-
1 CTTTC-CTT-TTTTTCT
67381009 CTTTTCCTTTTTTTCT
1 C-TTTCCTTTTTTTCT
67381025 CTTTCCTTTTT
1 CTTTCCTTTTT
67381036 CTCTTTTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
14 5 0.10
15 27 0.56
16 5 0.10
17 11 0.23
ACGTcount: A:0.03, C:0.22, G:0.01, T:0.74
Consensus pattern (15 bp):
CTTTCCTTTTTTTCT
Found at i:67387395 original size:126 final size:126
Alignment explanation
Indices: 67387170--67387413 Score: 416
Period size: 126 Copynumber: 1.9 Consensus size: 126
67387160 GTTTTAGCCT
*
67387170 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTATGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* * *
67387235 TTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAGAGTGAACTGG
66 CTTCGAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* * * *
67387296 TAAGAGGATATTCGAATATTCAAGACAAACAAAGGAAGCGAAACCCGGTACGTTAGGGCATGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
67387361 CTTCGAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 CTTCGAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
67387414 AAGATCAATG
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 110 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCGAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:67387658 original size:21 final size:21
Alignment explanation
Indices: 67387624--67387674 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
67387614 TAATAATATT
*
67387624 AAAAACATGATGATAATAACA
1 AAAAATATGATGATAATAACA
* *
67387645 AAAAATATGTTGATGATAACA
1 AAAAATATGATGATAATAACA
**
67387666 TTAAATATG
1 AAAAATATG
67387675 GGGGATAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (21 bp):
AAAAATATGATGATAATAACA
Found at i:67387883 original size:14 final size:14
Alignment explanation
Indices: 67387864--67387894 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67387854 ATATATTTAC
*
67387864 ATAATAAATATATA
1 ATAATAAATAAATA
67387878 ATAATAAATAAATA
1 ATAATAAATAAATA
67387892 ATA
1 ATA
67387895 TAATAATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:67387895 original size:19 final size:18
Alignment explanation
Indices: 67387866--67387903 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
67387856 ATATTTACAT
67387866 AATAAATATATAATAATA
1 AATAAATATATAATAATA
67387884 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
67387903 A
1 A
67387904 GAAACATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:67387985 original size:61 final size:60
Alignment explanation
Indices: 67387877--67388014 Score: 163
Period size: 61 Copynumber: 2.2 Consensus size: 60
67387867 ATAAATATAT
* * *
67387877 AATAATAAATAAATAATATAATAATAAGAAACATAACTCAAATTAATTAAATTAATAG-AA
1 AATAATAAA-AAAAAATATAAAAATAAGAAACATAACTCAAATTAATTAAATTAACAGTAA
* *
67387937 AATAATAAAAAAAAATATAAAAATAATGAGA-ATAGAGCTCAAATTAATTAATTTAACAGTAA
1 AATAATAAAAAAAAATATAAAAATAA-GAAACATA-A-CTCAAATTAATTAAATTAACAGTAA
*
67387999 AATAACAAAAATAAAA
1 AATAATAAAAA-AAAA
67388015 AGGGTTAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 18 0.27
60 13 0.19
61 20 0.30
62 12 0.18
63 4 0.06
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (60 bp):
AATAATAAAAAAAAATATAAAAATAAGAAACATAACTCAAATTAATTAAATTAACAGTAA
Found at i:67388311 original size:18 final size:18
Alignment explanation
Indices: 67388288--67388323 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
67388278 TAACAAGTAG
* *
67388288 GGTGATGGAGTTAGTGGA
1 GGTGATAGAGGTAGTGGA
67388306 GGTGATAGAGGTAGTGGA
1 GGTGATAGAGGTAGTGGA
67388324 TGGTTTAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.50, T:0.25
Consensus pattern (18 bp):
GGTGATAGAGGTAGTGGA
Found at i:67388374 original size:29 final size:29
Alignment explanation
Indices: 67388341--67388404 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
67388331 GTAGGGTGTG
67388341 AGGGTGATGGAGGTAGTGGAT-GGTTTAGT
1 AGGGTGATGGAGGTAGTGG-TCGGTTTAGT
*
67388370 AGGGTGATGGAGTTAGTGGTCGGTTTAGT
1 AGGGTGATGGAGGTAGTGGTCGGTTTAGT
*
67388399 GGGGTG
1 AGGGTG
67388405 TTTAATTTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 1 0.03
29 31 0.97
ACGTcount: A:0.17, C:0.02, G:0.50, T:0.31
Consensus pattern (29 bp):
AGGGTGATGGAGGTAGTGGTCGGTTTAGT
Found at i:67392238 original size:92 final size:93
Alignment explanation
Indices: 67392127--67392297 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
67392117 GCCCATAAGT
* *
67392127 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67392192 C-AGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
67392219 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67392284 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67392298 CAAATATCCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 63 0.84
93 12 0.16
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67392293 original size:46 final size:46
Alignment explanation
Indices: 67392119--67392293 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
67392109 TGTAACCCGC
* * *
67392119 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67392165 CCATAAGTGAACTCGGACTCAACTCAAC-AGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
67392214 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
67392257 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67392294 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 9 0.08
46 82 0.75
47 11 0.10
48 1 0.01
49 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67392312 original size:46 final size:45
Alignment explanation
Indices: 67392124--67392312 Score: 143
Period size: 46 Copynumber: 4.1 Consensus size: 45
67392114 CCCGCCCATA
* ** ** * *
67392124 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
* *
67392170 AGTGAACTCGGACTCAACTCAAC-AGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
67392217 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
67392262 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
67392308 AGTGA
1 AGTGA
67392313 CATGTCACTT
Statistics
Matches: 111, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
43 4 0.04
45 8 0.07
46 80 0.72
47 11 0.10
48 4 0.04
49 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:67400584 original size:25 final size:25
Alignment explanation
Indices: 67400554--67400605 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
67400544 TTAATTTTCT
67400554 TTCTTGTTATACATTAATCACATAA
1 TTCTTGTTATACATTAATCACATAA
67400579 TTCTTGTTATACATTAATCACATAA
1 TTCTTGTTATACATTAATCACATAA
67400604 TT
1 TT
67400606 TATCTCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.15, G:0.04, T:0.46
Consensus pattern (25 bp):
TTCTTGTTATACATTAATCACATAA
Found at i:67401264 original size:13 final size:14
Alignment explanation
Indices: 67401226--67401263 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
67401216 CTAGAAAAGT
67401226 AAGTCATTTTTCAG
1 AAGTCATTTTTCAG
* *
67401240 AAATCATTTTTCGG
1 AAGTCATTTTTCAG
67401254 AAGTCATTTT
1 AAGTCATTTT
67401264 CAGTGAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (14 bp):
AAGTCATTTTTCAG
Found at i:67401704 original size:3 final size:3
Alignment explanation
Indices: 67401696--67401726 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
67401686 AACTTTTTGT
67401696 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
67401727 CAACTTTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:67402201 original size:37 final size:37
Alignment explanation
Indices: 67402173--67402262 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 37
67402163 ATCGTTATTG
*
67402173 TTCATCTCCGTCTTTTTTTTGTAGAGAATTATTACTA
1 TTCATCTCCGTCTTTTTTTTGTAGAGAATCATTACTA
** *
67402210 TTCATCTTTGTCTTTTCTTTGTAGAGAATCATTACTA
1 TTCATCTCCGTCTTTTTTTTGTAGAGAATCATTACTA
67402247 TTCATCTCCGTCTTTT
1 TTCATCTCCGTCTTTT
67402263 GTTGTCCAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.19, C:0.19, G:0.10, T:0.52
Consensus pattern (37 bp):
TTCATCTCCGTCTTTTTTTTGTAGAGAATCATTACTA
Found at i:67411726 original size:7 final size:7
Alignment explanation
Indices: 67411714--67411741 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
67411704 GGGAGATAAG
67411714 ATCTTCA
1 ATCTTCA
67411721 ATCTTCA
1 ATCTTCA
67411728 ATCTTCA
1 ATCTTCA
67411735 ATCTTCA
1 ATCTTCA
67411742 GTCTACTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (7 bp):
ATCTTCA
Found at i:67412143 original size:190 final size:181
Alignment explanation
Indices: 67411727--67412410 Score: 855
Period size: 190 Copynumber: 3.7 Consensus size: 181
67411717 TTCAATCTTC
* * * *
67411727 AATCTTCAA-TCTTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAGACTACCA-TCTTTAACTT
1 AATCTTCAATTC-TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT--CATTCTTCAACCT
* * * * ** * * * *
67411790 GCTCTCTTGCTTCTTCAGGGAGATAAGGTTTAGTGGTAAAATCTGTTCCACTGCTGATACATGGA
63 GCTCTCCTGCTACCTCAGAGAGATAAGACTTGGTGGTAAAATCTGCTCCATTGCCGATACATGGA
67411855 GATAAGATTCACCATCTG-CGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
128 GATAAGATTCACCATCTGACGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
* * * *
67411908 AATCTCCAAATCTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATACTTCAACCTGCT
1 AATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* * *
67411973 CTCCTACTACTTCAGAGAGATAAGACCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGAT
66 CTCCTGCTACCTCAGAGAGATAAGACTTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGAT
*
67412038 GAGATTCACCATCTGTGAAGATCTGCAAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
131 AAGATTCACCATC--T---GA-C-G--AAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
* * * *
67412098 AATCTTCAATTCTTAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTTATTCTTCAGCCTGCT
1 AATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
*
67412163 CT-CTCGCTACCTCAGAGAGATAA-AGCTTGGTGGTGAAATCTGCTCCATTGCCGATACATGGAG
66 CTCCT-GCTACCTCAGAGAGATAAGA-CTTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAG
* *
67412226 ATAAGATT--CCATCT-ACGAAGATCTGCTCTGC-GACAACTTCAGGGAAATAA
129 ATAAGATTCACCATCTGACGAAGATCTGCTCCGCTG-CAACTTCAGGGAGATAA
* *
67412276 AATTTTCAATTCTCAGTCTGCTTCCTTGCTACTTCAGGAAGATAAGACTCATTCTTCAACCTGCT
1 AATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* * * *
67412341 CTCTTGCTACCTCAGAGAGATAAGGCTTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGAT
66 CTCCTGCTACCTCAGAGAGATAAGACTTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGAT
67412406 AAGAT
131 AAGAT
67412411 CTTCAATCTT
Statistics
Matches: 441, Mismatches: 45, Indels: 37
0.84 0.09 0.07
Matches are distributed among these distances:
177 1 0.00
178 150 0.34
179 3 0.01
180 77 0.17
181 43 0.10
182 4 0.01
185 1 0.00
186 1 0.00
187 1 0.00
188 6 0.01
189 3 0.01
190 151 0.34
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (181 bp):
AATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
CTCCTGCTACCTCAGAGAGATAAGACTTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGAT
AAGATTCACCATCTGACGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
Found at i:67412358 original size:368 final size:369
Alignment explanation
Indices: 67411727--67412410 Score: 980
Period size: 368 Copynumber: 1.9 Consensus size: 369
67411717 TTCAATCTTC
* * *
67411727 AATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAGACTACCATCTTTAACTTGC
1 AATCTTCAATCTTCAGTATACTTCCTTGCTACCTCAGGAAAATAAGACTA-CATCTTCAACCTGC
* * * * * * * *
67411792 TCTCTTGCTTCTTCAGGGAGATAAGGTTTAGTGGTAAAATCTGTTCCACTGCTGATACATGGAGA
65 TCTCTCGCTACCTCAGAGAGATAAAGCTTAGTGGTAAAATCTGCTCCACTGCCGATACATGGAGA
* *
67411857 TAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAAAATCTCCAAATCTC
130 TAAGATT-ACCATCTACGAAGATCTGCTCCGCTGCAACTTCAGGGAAATAAAATCTCCAAATCTC
*
67411922 AGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATACTTCAACCTGCTCTCCTACTACTTCA
194 AGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATACTTCAACCTGCTCTCCTACTACCTCA
* * *
67411987 GAGAGATAAGACCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATGAGATTCACCATCT
259 GAGAGATAAGACCTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACCATCT
67412052 GTGAAGATCTGCAAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
324 GTGAAGATCTGCAAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
* * * *
67412098 AATCTTCAATTCTT-AGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTTA-TTCTTCAGCCTG
1 AATCTTCAA-TCTTCAGTATACTTCCTTGCTACCTCAGGAAAATAAGAC-TACATCTTCAACCTG
* * *
67412161 CTCTCTCGCTACCTCAGAGAGATAAAGCTTGGTGGTGAAATCTGCTCCATTGCCGATACATGGAG
64 CTCTCTCGCTACCTCAGAGAGATAAAGCTTAGTGGTAAAATCTGCTCCACTGCCGATACATGGAG
* * * *
67412226 ATAAGATT-CCATCTACGAAGATCTGCTCTGC-GACAACTTCAGGGAAATAAAATTTTCAATTCT
129 ATAAGATTACCATCTACGAAGATCTGCTCCGCTG-CAACTTCAGGGAAATAAAATCTCCAAATCT
* * * * *
67412289 CAGTCTGCTTCCTTGCTACTTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGCTACCTC
193 CAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATACTTCAACCTGCTCTCCTACTACCTC
* *
67412354 AGAGAGATAAGGCTTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGATAAGAT
258 AGAGAGATAAGACCTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGATAAGAT
67412411 CTTCAATCTT
Statistics
Matches: 275, Mismatches: 35, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
367 1 0.00
368 158 0.57
370 70 0.25
371 40 0.15
372 6 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (369 bp):
AATCTTCAATCTTCAGTATACTTCCTTGCTACCTCAGGAAAATAAGACTACATCTTCAACCTGCT
CTCTCGCTACCTCAGAGAGATAAAGCTTAGTGGTAAAATCTGCTCCACTGCCGATACATGGAGAT
AAGATTACCATCTACGAAGATCTGCTCCGCTGCAACTTCAGGGAAATAAAATCTCCAAATCTCAG
TCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATACTTCAACCTGCTCTCCTACTACCTCAGA
GAGATAAGACCTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACCATCTGT
GAAGATCTGCAAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
Found at i:67412371 original size:178 final size:178
Alignment explanation
Indices: 67411727--67412410 Score: 766
Period size: 178 Copynumber: 3.8 Consensus size: 178
67411717 TTCAATCTTC
* * * * *
67411727 AATCTTCAA-TCTTCAGTCTACTTCCTTGCTACCTCAGGAAAATAAGACTACCA-TCTTTAACTT
1 AATCTTCAATTC-TCAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACT--CATTCTTCAACCT
* * * * * * * * * * * *
67411790 GCTCTCTTGCTTCTTCAGGGAGATAAGGTTTAGTGGTAAAATCTGTTCCACTGCTGATACATGGA
63 GCTCTCTCGCTACCTCAGAGAGATAAAGCTTGGTAGTAAAATCTGCTCCATTACCGATACATGGA
* *
67411855 GATAAGATTCACCATCTGCGAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
128 GATAAGATT--CCATCTACGAAGATCTGCTCCGCTGCAACTTCAGGGAAATAA
* * * * *
67411908 AATCTCCAAATCTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACTCATACTTCAACCTGCT
1 AATCTTCAATTCTCAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* * * * *
67411973 CTC-CTACTACTTCAGAGAGAT-AAGACCTGGTGGTAAAATCTGCTCCATTGCCGATACATGGAG
66 CTCTC-GCTACCTCAGAGAGATAAAG-CTTGGTAGTAAAATCTGCTCCATTACCGATACATGGAG
* *
67412036 ATGAGATTCACCATCTGTGAAGATCTGCAAAGATCTGCTCCGCTGCAACTTCAGGGAGATAA
129 ATAAGATT--CCATC--T----A-C-G--AAGATCTGCTCCGCTGCAACTTCAGGGAAATAA
* * *
67412098 AATCTTCAATTCTTAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTTATTCTTCAGCCTGCT
1 AATCTTCAATTCTCAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* * *
67412163 CTCTCGCTACCTCAGAGAGATAAAGCTTGGTGGTGAAATCTGCTCCATTGCCGATACATGGAGAT
66 CTCTCGCTACCTCAGAGAGATAAAGCTTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGAT
*
67412228 AAGATTCCATCTACGAAGATCTGCTCTGC-GACAACTTCAGGGAAATAA
131 AAGATTCCATCTACGAAGATCTGCTCCGCTG-CAACTTCAGGGAAATAA
* * *
67412276 AATTTTCAATTCTCAGTCTGCTTCCTTGCTACTTCAGGAAGATAAGACTCATTCTTCAACCTGCT
1 AATCTTCAATTCTCAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
* *
67412341 CTCTTGCTACCTCAGAGAGATAAGGCTTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGAT
66 CTCTCGCTACCTCAGAGAGATAAAGCTTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGAT
67412406 AAGAT
131 AAGAT
67412411 CTTCAATCTT
Statistics
Matches: 440, Mismatches: 46, Indels: 37
0.84 0.09 0.07
Matches are distributed among these distances:
177 1 0.00
178 153 0.35
179 4 0.01
180 73 0.17
181 43 0.10
182 4 0.01
186 1 0.00
187 1 0.00
188 6 0.01
190 150 0.34
191 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (178 bp):
AATCTTCAATTCTCAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCT
CTCTCGCTACCTCAGAGAGATAAAGCTTGGTAGTAAAATCTGCTCCATTACCGATACATGGAGAT
AAGATTCCATCTACGAAGATCTGCTCCGCTGCAACTTCAGGGAAATAA
Found at i:67416281 original size:21 final size:18
Alignment explanation
Indices: 67416242--67416287 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
67416232 AATCATCATC
67416242 ATAAGTAATAATATTTTA
1 ATAAGTAATAATATTTTA
67416260 ATAAGTAATAATATTTTA
1 ATAAGTAATAATATTTTA
* *
67416278 TTAATTAATA
1 ATAAGTAATA
67416288 TTATAATACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (18 bp):
ATAAGTAATAATATTTTA
Found at i:67416866 original size:161 final size:161
Alignment explanation
Indices: 67416601--67416896 Score: 574
Period size: 161 Copynumber: 1.8 Consensus size: 161
67416591 GAAATGATTA
67416601 GAAGATGAATTATAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATGAATGGAAAATTTACTTGG
1 GAAGATGAATTATAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATGAATGGAAAATTTACTTGG
67416666 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
66 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
67416731 TGATAGCTTGTGAAGCAGTGAGTATTTTGGT
131 TGATAGCTTGTGAAGCAGTGAGTATTTTGGT
* *
67416762 GAAGATGAATTCTAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATGAATTGAAAATTTACTTGG
1 GAAGATGAATTATAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATGAATGGAAAATTTACTTGG
67416827 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
66 TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
67416892 TGATA
131 TGATA
67416897 CTAGGAAACT
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
161 133 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (161 bp):
GAAGATGAATTATAGCTTGTTAGAAGTGTGAAAAAGAAATAAAAATGAATGGAAAATTTACTTGG
TATATTTGGCCATGTTAAAGGGAAAGTAGAGAACATTGGCCACTTTGTGTAATATTAATGCTAAA
TGATAGCTTGTGAAGCAGTGAGTATTTTGGT
Found at i:67419804 original size:28 final size:28
Alignment explanation
Indices: 67419768--67419828 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
67419758 TATCCTTTTA
*
67419768 ATTGGCTAGTAAATCCAATAACTAAAAG
1 ATTGACTAGTAAATCCAATAACTAAAAG
67419796 ATTGACTAGTAAATCCAATAACTAAAAG
1 ATTGACTAGTAAATCCAATAACTAAAAG
67419824 ATTGA
1 ATTGA
67419829 TTCTAGCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (28 bp):
ATTGACTAGTAAATCCAATAACTAAAAG
Found at i:67424045 original size:19 final size:19
Alignment explanation
Indices: 67424023--67424059 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
67424013 GTCTAAATGT
67424023 CTTATTTAAATTAAAATAC
1 CTTATTTAAATTAAAATAC
*
67424042 CTTATTTCAATTAAAATA
1 CTTATTTAAATTAAAATA
67424060 TTTACGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (19 bp):
CTTATTTAAATTAAAATAC
Found at i:67425103 original size:14 final size:14
Alignment explanation
Indices: 67425084--67425110 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67425074 TTGAATTTGA
67425084 AATTTAATTTTTAT
1 AATTTAATTTTTAT
67425098 AATTTAATTTTTA
1 AATTTAATTTTTA
67425111 ATGTAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
AATTTAATTTTTAT
Found at i:67427854 original size:19 final size:22
Alignment explanation
Indices: 67427831--67427879 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 22
67427821 TATGCAAGTG
67427831 AATAAATAAT-TT-AAAAAAT-
1 AATAAATAATGTTCAAAAAATA
*
67427850 TATAAAT-ATGTTCAAAAAATA
1 AATAAATAATGTTCAAAAAATA
67427871 AATAAATAA
1 AATAAATAA
67427880 AAATATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 2 0.08
19 8 0.33
20 7 0.29
21 6 0.25
22 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
AATAAATAATGTTCAAAAAATA
Found at i:67427942 original size:4 final size:4
Alignment explanation
Indices: 67427933--67427958 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
67427923 TTTTACTATT
67427933 AAGA AAGA AAGA AAGA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AA
67427959 AATGTGGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:67442975 original size:39 final size:39
Alignment explanation
Indices: 67442890--67443042 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
67442880 TATGGTAACC
* * *
67442890 CGCACAAATGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
67442930 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
67442969 CACACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
67443008 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
67443043 TTGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 87 0.84
40 16 0.16
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:67446566 original size:19 final size:22
Alignment explanation
Indices: 67446537--67446581 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
67446527 TAAATGCTAA
67446537 AAAATTGAAAT-TT-ATGGTAG
1 AAAATTGAAATGTTGATGGTAG
*
67446557 AAAA-TGAAATGTTGTTGGTAG
1 AAAATTGAAATGTTGATGGTAG
67446578 AAAA
1 AAAA
67446582 ACAACTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 6 0.27
21 10 0.45
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (22 bp):
AAAATTGAAATGTTGATGGTAG
Found at i:67451026 original size:35 final size:35
Alignment explanation
Indices: 67450987--67451068 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 35
67450977 ATACACACAA
* *
67450987 ATTTATCATCTCAT-CAATAGACCACATTACCAAAC
1 ATTTAACAT-TCATGCAATAAACCACATTACCAAAC
* * *
67451022 ATTTAACATTCATGCCATAAATCACATTTCCAAAC
1 ATTTAACATTCATGCAATAAACCACATTACCAAAC
* *
67451057 AATTCACATTCA
1 ATTTAACATTCA
67451069 CCAAGCATAC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 4 0.10
35 35 0.90
ACGTcount: A:0.40, C:0.27, G:0.02, T:0.30
Consensus pattern (35 bp):
ATTTAACATTCATGCAATAAACCACATTACCAAAC
Found at i:67452576 original size:40 final size:40
Alignment explanation
Indices: 67452531--67452698 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
67452521 CGGAATATAA
*
67452531 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67452571 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
67452611 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
67452651 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
67452691 CCGGATAT
1 CCGGATAT
67452699 CATTCAATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 104 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67452681 original size:80 final size:80
Alignment explanation
Indices: 67452547--67452698 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
67452537 ATAACCATGT
* *
67452547 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
67452612 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
67452627 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
67452690 CCCGGATAT
64 CCCGGATAT
67452699 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:67460579 original size:40 final size:40
Alignment explanation
Indices: 67460534--67460701 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
67460524 CGGAATATAA
*
67460534 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67460574 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
67460614 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
67460654 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
67460694 CCGGATAT
1 CCGGATAT
67460702 CATTCAATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 104 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:67460684 original size:80 final size:80
Alignment explanation
Indices: 67460550--67460701 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
67460540 ATAACCATGT
* *
67460550 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
67460615 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
67460630 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
67460693 CCCGGATAT
64 CCCGGATAT
67460702 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:67474756 original size:25 final size:24
Alignment explanation
Indices: 67474704--67474756 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
67474694 TTTTATCTCT
* *
67474704 ATTTATCTTCTTTAAGTACTTTTT
1 ATTTATCTTCTTTAAGCACTTTTC
67474728 ATTTATCTTCCTTTAA-CACTATTTC
1 ATTTATCTT-CTTTAAGCACT-TTTC
67474753 ATTT
1 ATTT
67474757 TTAGGTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.23, C:0.17, G:0.02, T:0.58
Consensus pattern (24 bp):
ATTTATCTTCTTTAAGCACTTTTC
Found at i:67476393 original size:28 final size:28
Alignment explanation
Indices: 67476356--67476414 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
67476346 ACTTATGGTT
67476356 TATTTTGAGATATTATTGATAGGAATTA
1 TATTTTGAGATATTATTGATAGGAATTA
*
67476384 TATTTTGAGATATTATTGATTGGAATTA
1 TATTTTGAGATATTATTGATAGGAATTA
67476412 TAT
1 TAT
67476415 GTATCATTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (28 bp):
TATTTTGAGATATTATTGATAGGAATTA
Found at i:67479912 original size:90 final size:90
Alignment explanation
Indices: 67479749--67479966 Score: 204
Period size: 90 Copynumber: 2.4 Consensus size: 90
67479739 ACCAAATAGG
* * ** * *
67479749 GTGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATCACACATCGATTTCATATCCTAGATA
1 GTGCCAAAGCCATGTCCCAAACATGGTCTTACACGGGACCACACATCGATGCCATATCCCAGACA
*
67479814 TGGTCTTATATGAAGTCTCAAATCA
66 TGGGCTTATATGAAGTCTCAAATCA
* * * * * * * *
67479839 GTGCCAATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATATTGATGCCTTGTCCCAGACA
1 GTGCCAAAGCCATGTCCCAAACATGGTCTTACACGGGACCACACATCGATGCCATATCCCAGACA
* * * ** *
67479904 TGGGCTTATACGAAATCACTTACCA
66 TGGGCTTATATGAAGTCTCAAATCA
* * *
67479929 ATGCCGAAGCCATATCCCTAAA-ATGGTCTTACACGGGA
1 GTGCCAAAGCCATGTCCC-AAACATGGTCTTACACGGGA
67479967 TCGCATATCA
Statistics
Matches: 100, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
90 98 0.98
91 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (90 bp):
GTGCCAAAGCCATGTCCCAAACATGGTCTTACACGGGACCACACATCGATGCCATATCCCAGACA
TGGGCTTATATGAAGTCTCAAATCA
Found at i:67479933 original size:42 final size:42
Alignment explanation
Indices: 67479842--67479933 Score: 94
Period size: 42 Copynumber: 2.2 Consensus size: 42
67479832 CAAATCAGTG
* ** *
67479842 CCAATGCCATGTCCCAGACATGGTCTTATACGGGACCTCATA
1 CCAATGCCATGTCCCAGACATGGGCTTATACGAAACCACATA
*** * * *
67479884 TTGATGCCTTGTCCCAGACATGGGCTTATACGAAATCACTTA
1 CCAATGCCATGTCCCAGACATGGGCTTATACGAAACCACATA
67479926 CCAATGCC
1 CCAATGCC
67479934 GAAGCCATAT
Statistics
Matches: 37, Mismatches: 13, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (42 bp):
CCAATGCCATGTCCCAGACATGGGCTTATACGAAACCACATA
Found at i:67480007 original size:48 final size:48
Alignment explanation
Indices: 67479835--67480016 Score: 155
Period size: 48 Copynumber: 3.9 Consensus size: 48
67479825 GAAGTCTCAA
* * * *
67479835 ATCAGTGCCAATGCCATGTCCCAGACATGGTCTTATACGGGACCTCAT
1 ATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACAT
* * * ** *
67479883 AT---TG---ATGCCTTGTCCCAGACATGGGCTTATACGAAATCACTT
1 ATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACAT
* * * *
67479925 ACCAATGCCGAA-GCCATATCCCTA-AAATGGTCTTACACGGGATCGCAT
1 ATCAATGCC-AATGCCATGTCCC-AGACATGGTCTTACACGGGATCACAT
*
67479973 ATCAATGCCAATGCCATGTCCCAGACATGTTCTTACACGGGATC
1 ATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATC
67480017 TCATTAACCA
Statistics
Matches: 103, Mismatches: 21, Indels: 20
0.72 0.15 0.14
Matches are distributed among these distances:
42 32 0.31
45 4 0.04
47 3 0.03
48 62 0.60
49 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (48 bp):
ATCAATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACAT
Found at i:67487867 original size:40 final size:39
Alignment explanation
Indices: 67487823--67488031 Score: 134
Period size: 40 Copynumber: 5.2 Consensus size: 39
67487813 CTTCGGGACA
* *
67487823 TAGCCCGGTTATAGTGATTCGCAC-AATTGCCTTCAGGAAT
1 TAGCCCGGTT-TAGTAACTCGCACGAA-TGCCTTCAGGAAT
* *
67487863 TAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACT
1 TAGCCCGG-TTTAGTAACTCGCACGAATGCCTTCAGGAAT
* * * * * *
67487903 TAACCCGGTTTTGGTAACTCGCACAAATTCCTTCGGGACT
1 TAGCCCGG-TTTAGTAACTCGCACGAATGCCTTCAGGAAT
* * * * * *
67487943 TAACCCAGTTTTGGTAACTCGCACAAATTCCTTCGGGAAT
1 TAGCCC-GGTTTAGTAACTCGCACGAATGCCTTCAGGAAT
* * * * * *
67487983 T-GACCCGGGTTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 TAG-CCC-GGTTTAGTAAC-TCGCACGAATGCCTTCAGGAAT
67488024 TAGCCCGG
1 TAGCCCGG
67488032 ACACCATTCG
Statistics
Matches: 143, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
40 115 0.80
41 27 0.19
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
TAGCCCGGTTTAGTAACTCGCACGAATGCCTTCAGGAAT
Found at i:67487911 original size:80 final size:79
Alignment explanation
Indices: 67487799--67488032 Score: 218
Period size: 80 Copynumber: 2.9 Consensus size: 79
67487789 GGATATAGCG
* * * * * * * *
67487799 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCAGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAATTGCCTTCGGGACTT
67487864 AGCCCGGATTTAGTA
65 AGCCCGGATTTAGTA
* *
67487879 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATT-CCTTCGGGACT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTAATTCGCAC-AATTGCCTTCGGGACT
* * * *
67487943 TAACCCAGTTTTGGTA
64 TAGCCCGGATTTAGTA
* * * * * * **
67487959 ACTCGCACAAATTCCTTCGGGAATTGACCCGGGTTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 ACTCGCACGAATGCCTTCGGGACTTAACCC-GGTTTAGT-AATTCGCACAATTGCCTTCGGGACT
67488024 TAGCCCGGA
64 TAGCCCGGA
67488033 CACCATTCGA
Statistics
Matches: 122, Mismatches: 27, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
80 91 0.75
81 31 0.25
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGTAATTCGCACAATTGCCTTCGGGACTTA
GCCCGGATTTAGTA
Found at i:67494248 original size:40 final size:39
Alignment explanation
Indices: 67494204--67494421 Score: 215
Period size: 40 Copynumber: 5.5 Consensus size: 39
67494194 GCTCGATTGT
* * *
67494204 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACAAATGC
*
67494244 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACA-TAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
67494284 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
67494324 CTTCGGGACTTAACCCGATTTTGGTAACTCGCACAAATGC
1 CTTCGGGACATAGCCCG-GTTTAGTAACTCGCACAAATGC
* * * *
67494364 CTTCGGGA-ATTGACCCGGTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAG-CCCGGTTTAGTAAC-TCGCACAAATGC
*
67494404 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
67494422 ACACCATTCG
Statistics
Matches: 151, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
39 9 0.06
40 138 0.91
41 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:67494302 original size:80 final size:80
Alignment explanation
Indices: 67494190--67494422 Score: 263
Period size: 80 Copynumber: 2.9 Consensus size: 80
67494180 GGATATAGCG
* * * * * * * *
67494190 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTT
67494255 AGCCCGGA-TTTAGTA
65 AGCCCGGATTTTAGTA
* *
67494270 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTT
* *
67494335 AACCC-GATTTTGGTA
65 AGCCCGGATTTTAGTA
* * * * * *
67494350 ACTCGCACAAATGCCTTCGGGAATTGACCCGGTTTAGTCACTTAGCACAAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGT-AATTCGCACAAATGCCTTCGGGACTT
67494415 AGCCCGGA
65 AGCCCGGA
67494423 CACCATTCGA
Statistics
Matches: 128, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
79 7 0.05
80 117 0.91
81 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTA
GCCCGGATTTTAGTA
Found at i:67497851 original size:28 final size:28
Alignment explanation
Indices: 67497811--67497866 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
67497801 AGAATTACAT
67497811 CAAATTCATCAAACGGTAATAGCATGAG
1 CAAATTCATCAAACGGTAATAGCATGAG
67497839 CAAATTCATCAAACGGTAATAGCATGAG
1 CAAATTCATCAAACGGTAATAGCATGAG
67497867 ATTAGCCGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (28 bp):
CAAATTCATCAAACGGTAATAGCATGAG
Found at i:67508263 original size:47 final size:44
Alignment explanation
Indices: 67508110--67508274 Score: 163
Period size: 46 Copynumber: 3.6 Consensus size: 44
67508100 GTGTCGGTGC
* *
67508110 CATGTCCCAGACATGGTCTTACCCT-GTCATCTCTC-GTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CATCTCTCAAT-GCCGATG
* * * * * * *
67508155 CATGTCCTAGACATGTCTTACACTGGCTTACATTTCAAGGTCGAAG
1 CATGTCCCAGACATGTCTTACACTAGCAT-C-TCTCAATGCCGATG
67508201 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCA-TC-TCTCAATGCCGATG
67508247 CCATGTCCCAGACATGTCTTACACTAGC
1 -CATGTCCCAGACATGTCTTACACTAGC
67508275 TCACACAAGT
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 44 0.45
47 28 0.29
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCATCTCTCAATGCCGATG
Found at i:67512205 original size:46 final size:46
Alignment explanation
Indices: 67512116--67512287 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
67512106 CATTATGAGA
* * * * * *
67512116 GCCAGTGTAAAACCATGTCTAGGACATGGCATCAGTATTGAGACGAGT
1 GCCAGTGTAAGA-CATGTCTGGGGCAT-GCATCGGCAATGAGACGAGT
* * * *
67512164 GCTAGTGTAAGACATGTTTGGGGCATGCATCGGC-CTCGAGACGTA-A
1 GCCAGTGTAAGACATGTCTGGGGCATGCATCGGCAAT-GAGACG-AGT
* *
67512210 GCCAATGTAAGACATGTCTGGGACATGCATCGGCAATGAGA-G-GT
1 GCCAGTGTAAGACATGTCTGGGGCATGCATCGGCAATGAGACGAGT
67512254 GCCAGTGTAAGACCATGTCTGGGGCATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGGCAT-GCATCG
67512288 ACACAGATAT
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 52 0.51
47 13 0.13
48 10 0.10
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGGCATGCATCGGCAATGAGACGAGT
Found at i:67514407 original size:42 final size:42
Alignment explanation
Indices: 67514318--67514409 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
67514308 CAAATCAGTG
* ** *
67514318 CCGACGCCATGTCCCAGACATGGTATTATACGGGACCTCATA
1 CCGATGCCATGTCCCAGACATGGTATTATACGAAACCACATA
* * * * *
67514360 TCGATGCCATGTCTCAGACATGGTCTTATACGAAATCACTTA
1 CCGATGCCATGTCCCAGACATGGTATTATACGAAACCACATA
67514402 CCGATGCC
1 CCGATGCC
67514410 GAAGCCATAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (42 bp):
CCGATGCCATGTCCCAGACATGGTATTATACGAAACCACATA
Found at i:67514410 original size:90 final size:90
Alignment explanation
Indices: 67514231--67514437 Score: 220
Period size: 90 Copynumber: 2.3 Consensus size: 90
67514221 TAGGGTTCCA
* * * *
67514231 AAGCCATGTCCCAGACATGGTCTTACATGGGACCACACATCGATGCGATATCCTAGATATGGTCT
1 AAGCCATGTCCCAGACATGGTATTACACGGGACCACACATCGATGCCATATCCTAGACATGGTCT
* * *
67514296 TATACGAAGTCTCAAATCAGTGCCG
66 TATACGAAATCACAAACCAGTGCCG
* * * * *
67514321 ACGCCATGTCCCAGACATGGTATTATACGGGACCTCATATCGATGCCATGT-CTCAGACATGGTC
1 AAGCCATGTCCCAGACATGGTATTACACGGGACCACACATCGATGCCATATCCT-AGACATGGTC
**
67514385 TTATACGAAATCACTTACC-GATGCCG
65 TTATACGAAATCACAAACCAG-TGCCG
* * * *
67514411 AAGCCATATCCCTGATATGGTCTTACA
1 AAGCCATGTCCCAGACATGGTATTACA
67514438 TAGGATTGTG
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
89 3 0.03
90 92 0.97
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (90 bp):
AAGCCATGTCCCAGACATGGTATTACACGGGACCACACATCGATGCCATATCCTAGACATGGTCT
TATACGAAATCACAAACCAGTGCCG
Found at i:67518824 original size:25 final size:26
Alignment explanation
Indices: 67518790--67518849 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
67518780 CATTTTTTCC
* *
67518790 CAAAATTTTA-CCAGGAAAAAATCGT
1 CAAAATTTTATCAAGGAAAAAATAGT
*
67518815 CAAAATTTTATCAAGGACAAAATAGT
1 CAAAATTTTATCAAGGAAAAAATAGT
67518841 CAAAATTTT
1 CAAAATTTT
67518850 GCTGGGGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
25 10 0.32
26 21 0.68
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.28
Consensus pattern (26 bp):
CAAAATTTTATCAAGGAAAAAATAGT
Found at i:67521084 original size:12 final size:12
Alignment explanation
Indices: 67521036--67521089 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
67521026 ACCTAATCAC
67521036 TTTAATATTAAA
1 TTTAATATTAAA
67521048 -TTAATATTGATAA
1 TTTAATATT-A-AA
**
67521061 TTATTTTATTAAA
1 TT-TAATATTAAA
67521074 TTTAATATTAAA
1 TTTAATATTAAA
67521086 TTTA
1 TTTA
67521090 TTAAAATAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 8 0.24
12 13 0.38
13 6 0.18
14 2 0.06
15 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:67537733 original size:56 final size:52
Alignment explanation
Indices: 67537614--67537756 Score: 171
Period size: 56 Copynumber: 2.6 Consensus size: 52
67537604 AAAATTATTA
* ***
67537614 AAAGTTAATTAGTTTTTATGATTTTAAAATTTGAAAATTTTTGAACTTTTTTT
1 AAAGTTAATTAGTTTTTATGATTTT-AAATTTTAAAATTTAAAAACTTTTTTT
*
67537667 AAAGTTAATTAGATTTTTATGATTTTAAATTTTAAATATTATAAAAAAGGTTTTTTT
1 AAAGTTAATTAG-TTTTTATGATTTTAAATTTTAAA-ATT-T-AAAAA-CTTTTTTT
67537724 -AAGTTAATTAGTTTTTTATGATTTTAAATTTTA
1 AAAGTTAATTAG-TTTTTATGATTTTAAATTTTA
67537757 TTATTTCATT
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
53 21 0.27
54 16 0.20
55 1 0.01
56 34 0.43
57 7 0.09
ACGTcount: A:0.36, C:0.01, G:0.09, T:0.54
Consensus pattern (52 bp):
AAAGTTAATTAGTTTTTATGATTTTAAATTTTAAAATTTAAAAACTTTTTTT
Done.