Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 238 of 427
Found at i:67540139 original size:33 final size:34
Alignment explanation
Indices: 67540039--67540143 Score: 122
Period size: 34 Copynumber: 3.1 Consensus size: 34
67540029 AACACTTGCC
* * * *
67540039 ATAAGCATGTTTACTGCTACCGTATTGATCTATT
1 ATAAGCATGATTATTGCTACCGTATTGATTTGTT
* * ** *
67540073 ATAAGCATGATAATTGCTACAGTATCAACTTGTT
1 ATAAGCATGATTATTGCTACCGTATTGATTTGTT
67540107 ATAAGCATG-TTATTGCTACCGTATTGATTTGTT
1 ATAAGCATGATTATTGCTACCGTATTGATTTGTT
67540140 ATAA
1 ATAA
67540144 TTATGTTGCA
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
33 23 0.40
34 34 0.60
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.40
Consensus pattern (34 bp):
ATAAGCATGATTATTGCTACCGTATTGATTTGTT
Found at i:67540266 original size:48 final size:48
Alignment explanation
Indices: 67540187--67540329 Score: 214
Period size: 48 Copynumber: 3.0 Consensus size: 48
67540177 ACAGAGGAAG
* * **
67540187 TAGTCGACAGTTTATCTGCACGACTAATGGTTCATCCACAATGTATTT
1 TAGTCGGCAGTTTATCTGCACGACCAATGGTTCATCCACAACATATTT
* *
67540235 TAGTCGGCAGTTTATCTGCATGACCAGTGGTTCATCCACAACATATTT
1 TAGTCGGCAGTTTATCTGCACGACCAATGGTTCATCCACAACATATTT
* *
67540283 TAGTCGGCAGTTTATCTACACAACCAATGGTTCATCCACAACATATT
1 TAGTCGGCAGTTTATCTGCACGACCAATGGTTCATCCACAACATATT
67540330 AGCATATTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (48 bp):
TAGTCGGCAGTTTATCTGCACGACCAATGGTTCATCCACAACATATTT
Found at i:67540992 original size:18 final size:19
Alignment explanation
Indices: 67540969--67541004 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67540959 TAATTTTAAT
67540969 TTTTAG-GAATAAATAAAC
1 TTTTAGAGAATAAATAAAC
*
67540987 TTTTAGATAATAAATAAA
1 TTTTAGAGAATAAATAAA
67541005 TTAAAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (19 bp):
TTTTAGAGAATAAATAAAC
Found at i:67542341 original size:17 final size:17
Alignment explanation
Indices: 67542319--67542352 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
67542309 AATACAAAAT
67542319 CAAATCTTATT-AGATTA
1 CAAATCTT-TTAAGATTA
67542336 CAAATCTTTTAAGATTA
1 CAAATCTTTTAAGATTA
67542353 TTTTTCCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (17 bp):
CAAATCTTTTAAGATTA
Found at i:67545768 original size:23 final size:24
Alignment explanation
Indices: 67545711--67545770 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 24
67545701 CAAATAATCG
*
67545711 AAAAAGAAGAA-A-ACGAAGGAGA
1 AAAAAGAAGAAGAGAAGAAGGAGA
67545733 AAAAA-AATG--GAGAAGAAGG-GA
1 AAAAAGAA-GAAGAGAAGAAGGAGA
67545754 AAAAAGAAGAAGAGAAG
1 AAAAAGAAGAAGAGAAG
67545771 TTCGACAACT
Statistics
Matches: 31, Mismatches: 1, Indels: 11
0.72 0.02 0.26
Matches are distributed among these distances:
21 11 0.35
22 14 0.45
23 6 0.19
ACGTcount: A:0.67, C:0.02, G:0.30, T:0.02
Consensus pattern (24 bp):
AAAAAGAAGAAGAGAAGAAGGAGA
Found at i:67559109 original size:45 final size:45
Alignment explanation
Indices: 67559024--67559122 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
67559014 TTGTGGATGT
* * * *
67559024 ACAGCAAAAATGTCGCAGATGGAATCTACCTTTGGCTGTGGGTTC
1 ACAGCAAAAATGTCACAGATGGAATCTACATATGGCTGTGGGTAC
* * *
67559069 ACAGCAAAAACT-TCACAGATGGGATCTATATATGGTTGTGGGTAC
1 ACAGCAAAAA-TGTCACAGATGGAATCTACATATGGCTGTGGGTAC
*
67559114 ATAGCAAAA
1 ACAGCAAAA
67559123 TAATGTAGAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
45 44 0.98
46 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (45 bp):
ACAGCAAAAATGTCACAGATGGAATCTACATATGGCTGTGGGTAC
Found at i:67560092 original size:27 final size:28
Alignment explanation
Indices: 67560045--67560097 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
67560035 CAACTTCTCT
*
67560045 TTGAGTTTTTCTTTTTCAAGAATTTTTC
1 TTGAGTTTTTCTTTTACAAGAATTTTTC
* *
67560073 TTGAG-TTTTCTTTTAGAAGAGTTTT
1 TTGAGTTTTTCTTTTACAAGAATTTT
67560098 AACAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.19, C:0.08, G:0.15, T:0.58
Consensus pattern (28 bp):
TTGAGTTTTTCTTTTACAAGAATTTTTC
Found at i:67560537 original size:27 final size:29
Alignment explanation
Indices: 67560507--67560562 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
67560497 AAAGATTGTT
* *
67560507 AAAACTCTTCTAAAAGAAAA-CT-AAAGA
1 AAAAATCTTCAAAAAGAAAAGCTCAAAGA
*
67560534 AAAAATCTTGAAAAAGAAAAGCTCAAAGA
1 AAAAATCTTCAAAAAGAAAAGCTCAAAGA
67560563 GAAGTTGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 17 0.71
28 2 0.08
29 5 0.21
ACGTcount: A:0.61, C:0.12, G:0.11, T:0.16
Consensus pattern (29 bp):
AAAAATCTTCAAAAAGAAAAGCTCAAAGA
Found at i:67565138 original size:49 final size:48
Alignment explanation
Indices: 67565079--67565345 Score: 237
Period size: 49 Copynumber: 5.6 Consensus size: 48
67565069 CCCATCAAGT
* * * *
67565079 CGATGCCATGTCTCAGACAAGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATATAT-GAGGC
* * * * *
67565128 CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCAGTGT
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATATATGAG-GC
* ** * *
67565177 CGATGCCATGTCCCAGGCATGGTCTTACACTAACACATC-T-CAT-A-GC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTC-TCATATATGAGGC
* * *
67565223 CGATG-CATGTCCCAGATATGTATTACACTGGCT-TACAT-TTTGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATATATGAGGC
* *
67565269 CGATGCCATGTCCCAGGCATGTTCTTACACTGGCTCTCATA-ATGTGGC
1 CGATGCCATGTCCCAGACATG-TCTTACACTGGCTCTCATATATGAGGC
*
67565317 TGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACATGTCTTACACT
67565346 AGCACACAAA
Statistics
Matches: 176, Mismatches: 31, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.07
45 13 0.07
46 22 0.12
47 27 0.15
48 27 0.15
49 58 0.33
50 13 0.07
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATATATGAGGC
Found at i:67565327 original size:94 final size:95
Alignment explanation
Indices: 67565033--67565345 Score: 268
Period size: 94 Copynumber: 3.3 Consensus size: 95
67565023 GTATAATGTT
* * * * *
67565033 GATGCCATGTTCCAAACATGGTCTTACACTGG--CTCACCCATCAAGT--CGATGCCATGTCTCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTATC-AGTGCCGATGCCATGTCCCA
* * * *
67565094 GACAAGTCTTACACTGACTTTCATATATCGAGGCC
63 GGCATGTCTTACACTGACTCTCATA-AT-GTGGCC
* * *
67565129 GATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCAGTGTCGATGCCATGTCCCAGG
1 GATG-CATGTCCCAGACATGTCTTACACTGGCTCTCATCTATCAGTGCCGATGCCATGTCCCAGG
* * * *
67565194 CATGGTCTTACACTAACACATC-TCA--TAGCC
65 CAT-GTCTTACACTGACTC-TCATAATGTGGCC
* * * *
67565224 GATGCATGTCCCAGATATGTATTACACTGGCT-TACAT-TTTGAG-GCCGATGCCATGTCCCAGG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTATCAGTGCCGATGCCATGTCCCAGG
* *
67565286 CATGTTCTTACACTGGCTCTCATAATGTGGCT
65 CATG-TCTTACACTGACTCTCATAATGTGGCC
67565318 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
67565346 AGCACACAAA
Statistics
Matches: 178, Mismatches: 28, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
91 3 0.02
92 34 0.19
93 5 0.03
94 56 0.31
95 19 0.11
96 20 0.11
97 8 0.04
98 18 0.10
99 13 0.07
100 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (95 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTATCAGTGCCGATGCCATGTCCCAGGC
ATGTCTTACACTGACTCTCATAATGTGGCC
Found at i:67574968 original size:39 final size:40
Alignment explanation
Indices: 67574818--67575045 Score: 340
Period size: 40 Copynumber: 5.8 Consensus size: 40
67574808 CGGATGATAA
* *
67574818 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* *
67574858 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
67574898 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
67574938 CGAAGGCATTTGTGC-AGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
67574977 CGAAGGCA-TTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
67575016 CGAAGGCATTTGAGCGAG-TAGCTATATCCG
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCG
67575046 TTAAATCCCG
Statistics
Matches: 180, Mismatches: 4, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
38 6 0.03
39 65 0.36
40 108 0.60
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:67575033 original size:118 final size:120
Alignment explanation
Indices: 67574818--67575045 Score: 351
Period size: 118 Copynumber: 1.9 Consensus size: 120
67574808 CGGATGATAA
*
67574818 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAA
1 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAA
*
67574883 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
66 TTCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGGGCTAAGTCC
*
67574938 CGAAGGCATTTGTGC-AGTTACT-ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGCT-ACT
1 CGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACT
67574999 -ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCG
64 AAT-TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCG
67575046 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 3, Indels: 10
0.89 0.03 0.09
Matches are distributed among these distances:
117 4 0.04
118 53 0.52
119 29 0.29
120 15 0.15
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (120 bp):
CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAA
TTCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGGCTAAGTCC
Found at i:67580479 original size:32 final size:32
Alignment explanation
Indices: 67580438--67580503 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
67580428 GATATGTTAA
67580438 GATGTTGCATCCTTGAGTTTAGTGGTTCATGG
1 GATGTTGCATCCTTGAGTTTAGTGGTTCATGG
67580470 GATGTTGCATCCTTGAGTTTAGTGGTTCATGG
1 GATGTTGCATCCTTGAGTTTAGTGGTTCATGG
67580502 GA
1 GA
67580504 ACGGTATTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.17, C:0.12, G:0.32, T:0.39
Consensus pattern (32 bp):
GATGTTGCATCCTTGAGTTTAGTGGTTCATGG
Found at i:67583226 original size:40 final size:40
Alignment explanation
Indices: 67583173--67583357 Score: 234
Period size: 40 Copynumber: 4.6 Consensus size: 40
67583163 GATGATAACA
* *
67583173 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCA
1 AAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCG
*
67583213 AAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCG
* * *
67583253 AAGGTATTTGTGCGAGTTACTATATCGGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
*
67583293 AAGGCATTGGTGCGAGCT-ACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCCG
*
67583333 AAGGCATTTGAGCGAGT-AGCTATAT
1 AAGGCATTTGTGCGAGTGA-CTATAT
67583358 TCTGTTAAAT
Statistics
Matches: 132, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.02
40 128 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCG
Found at i:67583793 original size:40 final size:40
Alignment explanation
Indices: 67583738--67583942 Score: 274
Period size: 40 Copynumber: 5.2 Consensus size: 40
67583728 CGGATGATAA
*
67583738 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
* *
67583778 CGAAGGTATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
*
67583818 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
* *
67583858 CGAAGGTATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
* * *
67583898 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCC
67583937 CGAAGG
1 CGAAGG
67583943 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.10
40 138 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
Found at i:67584040 original size:567 final size:567
Alignment explanation
Indices: 67582966--67584103 Score: 2132
Period size: 567 Copynumber: 2.0 Consensus size: 567
67582956 TTATATGTTG
*
67582966 AGTTAATTAGTCTATACGTATGATGGGTAGCCGTATGTGCATAGAGATCATGTCACAAAGCAAAT
1 AGTTAATTAGTCTATACGTATGATGGGTAGCCGTATGTGCATAGAGATCATGTCACAAAGCAAAC
67583031 CAAATCATGCTGTTTGTATGTGGCTATTGAGCCGAAAATGGGAATGCTTAATAATTGATTTGTGT
66 CAAATCATGCTGTTTGTATGTGGCTATTGAGCCGAAAATGGGAATGCTTAATAATTGATTTGTGT
*
67583096 TTGAATTCTAGTTATGAAAATGAAATAAAGATGTGTCATGATTTACTGATATGTGCATGAATATT
131 TTGAATTCTAGTTATGAAAATGAAATAAAGATGTGTCATGATTTACTGATATATGCATGAATATT
67583161 CGGATGATAACAAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTGC
196 CGGATGATAACAAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTGC
* *
67583226 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATATCGGGGCTAAGTCC
261 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
67583291 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT
326 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT
* * *
67583356 ATTCTGTTAAATCCTGAAGGTACTTGGTTTGGGAATGAGCGATTTTGCTGTAATAATTTCAATTA
391 ATCCGGTTAAATCCCGAAGGTACTTGGTTTGGGAATGAGCGATTTTGCTGTAATAATTTCAATTA
67583421 ATATGCTCGTAAAAACCCAACGATGAGGTATGTTTCATATATGCATTGGATTAATTGATTCCTTT
456 ATATGCTCGTAAAAACCCAACGATGAGGTATGTTTCATATATGCATTGGATTAATTGATTCCTTT
67583486 TAAATAGTATTCGCTCAGTCGATTAATGAGCTTCCGGCTTTTGGTTA
521 TAAATAGTATTCGCTCAGTCGATTAATGAGCTTCCGGCTTTTGGTTA
67583533 AGTTAATTAGTCTATACGTATGATGGGTAGCCGTATGTGCATAGAGATCATGTCACAAAGCAAAC
1 AGTTAATTAGTCTATACGTATGATGGGTAGCCGTATGTGCATAGAGATCATGTCACAAAGCAAAC
*
67583598 CAAATCATGTTGTTTGTATGTGGCTATTGAGCCGAAAATGGGAATGCTTAATAATTGATTTGTGT
66 CAAATCATGCTGTTTGTATGTGGCTATTGAGCCGAAAATGGGAATGCTTAATAATTGATTTGTGT
67583663 TTGAATTCTAGTTATGAAAATGAAATAAAGATGTGTCATGATTTACTGATATATGCATGAATATT
131 TTGAATTCTAGTTATGAAAATGAAATAAAGATGTGTCATGATTTACTGATATATGCATGAATATT
* * *
67583728 CGGATGATAACGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGTATTTGTGC
196 CGGATGATAACAAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTGC
67583793 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
261 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
67583858 CGAAGGTATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT
326 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT
67583923 ATCCGGTTAAATCCCGAAGGTACTTGGTTTGGGAATGAGCGATTTTGCTGTAATAATTTCAATTA
391 ATCCGGTTAAATCCCGAAGGTACTTGGTTTGGGAATGAGCGATTTTGCTGTAATAATTTCAATTA
* *
67583988 ATATGCTCGTAAAATCCCAACGATGAGGTATGTTTCGTATATGCATTGGATTAATTGATTCCTTT
456 ATATGCTCGTAAAAACCCAACGATGAGGTATGTTTCATATATGCATTGGATTAATTGATTCCTTT
67584053 TAAATAGTATTCGCTCAGTCGATTAATGAGCTTCCGGCTTTTGGTTA
521 TAAATAGTATTCGCTCAGTCGATTAATGAGCTTCCGGCTTTTGGTTA
67584100 AGTT
1 AGTT
67584104 GATTTCTTAT
Statistics
Matches: 555, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
567 555 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (567 bp):
AGTTAATTAGTCTATACGTATGATGGGTAGCCGTATGTGCATAGAGATCATGTCACAAAGCAAAC
CAAATCATGCTGTTTGTATGTGGCTATTGAGCCGAAAATGGGAATGCTTAATAATTGATTTGTGT
TTGAATTCTAGTTATGAAAATGAAATAAAGATGTGTCATGATTTACTGATATATGCATGAATATT
CGGATGATAACAAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTGC
TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT
ATCCGGTTAAATCCCGAAGGTACTTGGTTTGGGAATGAGCGATTTTGCTGTAATAATTTCAATTA
ATATGCTCGTAAAAACCCAACGATGAGGTATGTTTCATATATGCATTGGATTAATTGATTCCTTT
TAAATAGTATTCGCTCAGTCGATTAATGAGCTTCCGGCTTTTGGTTA
Found at i:67587258 original size:13 final size:13
Alignment explanation
Indices: 67587240--67587282 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
67587230 TTTAATAATA
67587240 AAATAAAGAAATG
1 AAATAAAGAAATG
67587253 AAATAAAGAAAT-
1 AAATAAAGAAATG
* *
67587265 AAATGAAATAAAAG
1 AAAT-AAAGAAATG
67587279 AAAT
1 AAAT
67587283 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 4 0.15
13 18 0.69
14 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:67587270 original size:17 final size:18
Alignment explanation
Indices: 67587236--67587282 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
67587226 ATAGTTTAAT
* *
67587236 AATAAAATAAAGAAATGA
1 AATAAAAGAAATAAATGA
67587254 AAT-AAAGAAATAAATGA
1 AATAAAAGAAATAAATGA
67587271 AATAAAAGAAAT
1 AATAAAAGAAAT
67587283 GAAAAAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (18 bp):
AATAAAAGAAATAAATGA
Found at i:67587274 original size:9 final size:9
Alignment explanation
Indices: 67587248--67587282 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
67587238 TAAAATAAAG
67587248 AAATGAAAT
1 AAATGAAAT
67587257 AAA-GAAAT
1 AAATGAAAT
67587265 AAATGAAAT
1 AAATGAAAT
*
67587274 AAAAGAAAT
1 AAATGAAAT
67587283 GAAAAAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.17
Consensus pattern (9 bp):
AAATGAAAT
Found at i:67587334 original size:4 final size:4
Alignment explanation
Indices: 67587325--67587355 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
67587315 AGAACAGGGG
67587325 AGAA AGAA AGGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA A-GAA AGAA AGAA AGAA AGAA AG
67587356 GGAGAAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:67588676 original size:5 final size:5
Alignment explanation
Indices: 67588661--67588707 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
67588651 AGTGGAAAAG
* *
67588661 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT T
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT T
67588708 ATGATTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 35 0.90
6 4 0.10
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:67589180 original size:45 final size:45
Alignment explanation
Indices: 67589116--67589265 Score: 210
Period size: 45 Copynumber: 3.3 Consensus size: 45
67589106 CTGTTAACGC
* * * * *
67589116 TACTGCTACTGTTACCGATTTGGCACTTTGTGTGTCAAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
67589161 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
* * * *
67589206 TACTGTTACCGTTAACGATTCGGCACTGTGTGAGTTGAATACTGT
1 TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
*
67589251 TACTGTTACTGTTAC
1 TACTGTTACCGTTAC
67589266 TGTTGCTATT
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 94 1.00
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTGTGTGTGTCGAATATTGT
Found at i:67589256 original size:6 final size:6
Alignment explanation
Indices: 67589245--67589269 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67589235 GTGAGTTGAA
67589245 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
67589270 GCTATTCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:67589570 original size:72 final size:72
Alignment explanation
Indices: 67589432--67589599 Score: 180
Period size: 72 Copynumber: 2.3 Consensus size: 72
67589422 TAAAGGTATA
* * * * * * *
67589432 AAATAACTGATTATTACTGAATAATTGACTGTAATTGGATAATTGACTGTTACTGGATATTAGAC
1 AAATAACTGAATATTACTGAATAATTGACTGTAACTGAATAACTGACTGTCACTGAATAATAGAC
*
67589497 TGTTACT
66 TGCTACT
*
67589504 AAATAACTGAATATTACTGAATAATTGATCAT-T-ACTGAATAACTGATTGTCACTGAATGAAT-
1 AAATAACTGAATATTACTGAATAATTGA-C-TGTAACTGAATAACTGACTGTCACTGAAT-AATA
67589566 GACTGCTACT
63 GACTGCTACT
* *
67589576 GAATAACTTAATAGTTACTGAATA
1 AAATAACTGAATA-TTACTGAATA
67589600 TCTGATTTTA
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
72 66 0.81
73 14 0.17
74 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (72 bp):
AAATAACTGAATATTACTGAATAATTGACTGTAACTGAATAACTGACTGTCACTGAATAATAGAC
TGCTACT
Found at i:67589694 original size:18 final size:18
Alignment explanation
Indices: 67589433--67589697 Score: 133
Period size: 18 Copynumber: 14.3 Consensus size: 18
67589423 AAAGGTATAA
* *
67589433 AATAACTGATTATTACTG
1 AATAATTGATTGTTACTG
* * *
67589451 AATAATTGACTGTAATTG
1 AATAATTGATTGTTACTG
* *
67589469 GATAATTGACTGTTACTG
1 AATAATTGATTGTTACTG
* * *
67589487 GAT-ATTAGACTGTTACTA
1 AATAATT-GATTGTTACTG
* * *
67589505 AATAACTGAATATTACTG
1 AATAATTGATTGTTACTG
**
67589523 AATAATTGATCATTACTG
1 AATAATTGATTGTTACTG
* *
67589541 AATAACTGATTGTCACTG
1 AATAATTGATTGTTACTG
* *
67589559 AATGAA-TGACTGCTACTG
1 AAT-AATTGATTGTTACTG
* *
67589577 AATAACTTAATAGTTACTG
1 AATAA-TTGATTGTTACTG
*
67589596 AAT-ATCTGATT-TTATTG
1 AATAAT-TGATTGTTACTG
*
67589613 AATAATTGACTGTTACTGG
1 AATAATTGATTGTTACT-G
* *
67589632 ATAACCGATCAATTGATCGATACTG
1 ---A---AT-AATTGATTGTTACTG
* * * *
67589657 AATAACTGGTTATTATTG
1 AATAATTGATTGTTACTG
67589675 AATAATTGATTGTTACTG
1 AATAATTGATTGTTACTG
67589693 AATAA
1 AATAA
67589698 ATAATTATTC
Statistics
Matches: 185, Mismatches: 46, Indels: 32
0.70 0.17 0.12
Matches are distributed among these distances:
17 18 0.10
18 133 0.72
19 18 0.10
22 2 0.01
25 3 0.02
26 11 0.06
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
AATAATTGATTGTTACTG
Found at i:67591993 original size:24 final size:24
Alignment explanation
Indices: 67591930--67592024 Score: 77
Period size: 24 Copynumber: 3.9 Consensus size: 24
67591920 GTATTTACCA
* * *
67591930 CAGCTCGTATGAGCTTACCGATATAT
1 CAGCTCATATGAGCTTA-CTAT-TTT
* *
67591956 CAGCTTATAAGAGCTTACTATTTT
1 CAGCTCATATGAGCTTACTATTTT
**
67591980 CAGCTCAT-TGGAGCTTAC-CGTTT
1 CAGCTCATAT-GAGCTTACTATTTT
*
67592003 CAGCTCATATGAGGTTACTATT
1 CAGCTCATATGAGCTTACTATT
67592025 CACCTTGATA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
23 18 0.33
24 19 0.35
25 3 0.06
26 14 0.26
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (24 bp):
CAGCTCATATGAGCTTACTATTTT
Found at i:67592007 original size:23 final size:23
Alignment explanation
Indices: 67591940--67592079 Score: 81
Period size: 23 Copynumber: 5.9 Consensus size: 23
67591930 CAGCTCGTAT
* *
67591940 GAGCTTACCGATATATCAGCTTATAA
1 GAGCTTACCG-T-T-TCAGCTCATTA
** *
67591966 GAGCTTACTATTTTCAGCTCATTG
1 GAGCTTAC-CGTTTCAGCTCATTA
67591990 GAGCTTACCGTTTCAGCTCA-TA
1 GAGCTTACCGTTTCAGCTCATTA
* * *
67592012 TGAGGTTA-C-TATTCACCTTGA-TA
1 -GAGCTTACCGT-TTCAGC-TCATTA
*
67592035 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCATTA
*
67592058 GAGCTTACTGTTCATCAGCTCA
1 GAGCTTACCGTT--TCAGCTCA
67592080 AGAGGAGCTT
Statistics
Matches: 90, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
21 1 0.01
22 15 0.17
23 39 0.43
24 17 0.19
25 9 0.10
26 9 0.10
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCATTA
Found at i:67592024 original size:47 final size:45
Alignment explanation
Indices: 67591940--67592071 Score: 124
Period size: 45 Copynumber: 2.8 Consensus size: 45
67591930 CAGCTCGTAT
* * *
67591940 GAGCTTACCGATATATCAGCTTATAAGAGCTTACTATTTTCAGC-TCATTG
1 GAGCTTACCG-T-T-TCAGCTCATAAGAGCTTACTA--TTCACCTTCA-TA
* * *
67591990 GAGCTTACCGTTTCAGCTCATATGAGGTTACTATTCACCTTGATA
1 GAGCTTACCGTTTCAGCTCATAAGAGCTTACTATTCACCTTCATA
*
67592035 GAGCTTACCGTTTCAGCTCA-ATAGAGCTTACTGTTCA
1 GAGCTTACCGTTTCAGCTCATA-AGAGCTTACTATTCA
67592072 TCAGCTCAAG
Statistics
Matches: 71, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
44 1 0.01
45 38 0.54
46 2 0.03
47 18 0.25
48 1 0.01
49 1 0.01
50 10 0.14
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (45 bp):
GAGCTTACCGTTTCAGCTCATAAGAGCTTACTATTCACCTTCATA
Found at i:67592103 original size:25 final size:25
Alignment explanation
Indices: 67592034--67592098 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 25
67592024 TCACCTTGAT
* *
67592034 AGAGCTTACCGTT--TCAGCTCAAT
1 AGAGCTTACTGTTCATCAGCTCAAG
67592057 AGAGCTTACTGTTCATCAGCTCAAG
1 AGAGCTTACTGTTCATCAGCTCAAG
67592082 AGGAGCTTACTGTTCAT
1 A-GAGCTTACTGTTCAT
67592099 GGCTCGAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
23 12 0.32
25 10 0.27
26 15 0.41
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (25 bp):
AGAGCTTACTGTTCATCAGCTCAAG
Found at i:67592267 original size:20 final size:19
Alignment explanation
Indices: 67592238--67592344 Score: 97
Period size: 20 Copynumber: 5.4 Consensus size: 19
67592228 AGATATGTGT
* *
67592238 TTATATGGATGAATTACTG
1 TTATACGGATGAACTACTG
* *
67592257 TTCATACGGATGAATTACTA
1 TT-ATACGGATGAACTACTG
*
67592277 TTATTACTGATGAACTACTG
1 TTA-TACGGATGAACTACTG
67592297 TTTATACGGATGAACTACTGG
1 -TTATACGGATGAACTACT-G
* * *
67592318 TTATATGAATGAACTACAG
1 TTATACGGATGAACTACTG
67592337 TTTATACG
1 -TTATACG
67592345 AATAGAAATG
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
19 4 0.05
20 65 0.89
21 4 0.05
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TTATACGGATGAACTACTG
Found at i:67592330 original size:40 final size:38
Alignment explanation
Indices: 67592238--67592344 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 38
67592228 AGATATGTGT
* * *
67592238 TTATATGGATGAATTACTGTTCATACGGATGAATTACTA
1 TTATAT-GATGAACTACTGTTTATACGGATGAACTACTA
*
67592277 TTATTACTGATGAACTACTGTTTATACGGATGAACTACTGG
1 TTA-TA-TGATGAACTACTGTTTATACGGATGAACTACT-A
*
67592318 TTATATGAATGAACTACAGTTTATACG
1 TTATATG-ATGAACTACTGTTTATACG
67592345 AATAGAAATG
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
39 5 0.08
40 50 0.85
41 4 0.07
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (38 bp):
TTATATGATGAACTACTGTTTATACGGATGAACTACTA
Found at i:67595533 original size:26 final size:26
Alignment explanation
Indices: 67595497--67595580 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
67595487 CATGAAATTC
67595497 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
67595523 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
67595549 TTATCATGGAACATTTACCAAACCTA
1 TTATCATGAAACATTTACCTAACCCA
67595575 TTATCA
1 TTATCA
67595581 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:67600600 original size:71 final size:71
Alignment explanation
Indices: 67600517--67600680 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
67600507 CGATTTGTCT
*
67600517 CGTAGCTCTCTTGTCTACATGGTTTCCTTCACTTGGAATCACGAATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGAATGCGACCTAGCTACATTTAT
67600582 CTTTCA
66 CTTTCA
*
67600588 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGAATGCGACCTAGCTACATTTAT
67600653 CTTTCA
66 CTTTCA
67600659 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67600681 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGAATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67600718 original size:71 final size:70
Alignment explanation
Indices: 67600517--67600714 Score: 242
Period size: 71 Copynumber: 2.8 Consensus size: 70
67600507 CGATTTGTCT
* * * *
67600517 CGTAGCTCTCTTGTCTACATGGTTTCCTTCACTTGGAATCACGA-ATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCAC-ACATGCGACCTAGCTACATTTA
67600581 TCTTTCA
64 TCTTTCA
* * * *
67600588 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
67600653 CTTTCA
65 CTTTCA
* *
67600659 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
67600715 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 93 0.79
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67608168 original size:71 final size:71
Alignment explanation
Indices: 67608084--67608247 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67608074 CGATTTGTCT
67608084 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67608149 CTTTCA
66 CTTTCA
67608155 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
67608220 CTTTCA
66 CTTTCA
67608226 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
67608248 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:67608285 original size:71 final size:70
Alignment explanation
Indices: 67608084--67608281 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
67608074 CGATTTGTCT
* * * *
67608084 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
67608149 CTTTCA
65 CTTTCA
* * * *
67608155 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
67608220 CTTTCA
65 CTTTCA
* *
67608226 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
67608282 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:67615763 original size:27 final size:27
Alignment explanation
Indices: 67615715--67615901 Score: 177
Period size: 27 Copynumber: 6.9 Consensus size: 27
67615705 AGCGAGCTGC
* * *
67615715 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
*
67615742 CAGATATTGTGGCAGAGCCACCATA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
67615768 CAGATATATGTGGCAGAGCCACCATA-A
1 CAGATAT-TGTGGCAGAGCCACCAGATA
67615795 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
67615822 CAGATAATTGTGGCATAGCCACTAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* *
67615849 CAGATATATGTAGAAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
67615876 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
67615902 GACGCTTCCT
Statistics
Matches: 135, Mismatches: 17, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
26 10 0.07
27 107 0.79
28 16 0.12
29 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:67615812 original size:54 final size:55
Alignment explanation
Indices: 67615718--67615901 Score: 221
Period size: 54 Copynumber: 3.4 Consensus size: 55
67615708 GAGCTGCCAG
* * * * *
67615718 ATATTGTGACAAAGTCACCAGATACAGATAT-TGTGGCAGAGCCACCATAACAGAT
1 ATATTGTGGCATAGCCACCAGA-ACAGATATATGTGGCAGAGCCACCAGATCAGAT
* *
67615773 ATA-TGTGGCAGAGCCACCATAACAGATATATGTGGCAGAGCCACCAGATCAGAT
1 ATATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGAT
* * * * *
67615827 A-ATTGTGGCATAGCCACTAGGACAGATATATGTAGAAGAGCCACCAGATTAGAT
1 ATATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGAT
*
67615881 AAATTGTGGCATAGCCACCAG
1 ATATTGTGGCATAGCCACCAG
67615902 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
53 9 0.08
54 82 0.73
55 21 0.19
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (55 bp):
ATATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGAT
Found at i:67615832 original size:81 final size:81
Alignment explanation
Indices: 67615715--67615901 Score: 216
Period size: 81 Copynumber: 2.3 Consensus size: 81
67615705 AGCGAGCTGC
* * *
67615715 CAGATAT-TGTGACAAAGTCACCAGATACAGATATTGTGGCAGAGCCACCATAACAGATATATGT
1 CAGATATATGTGGCAAAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGT
* * *
67615779 GGCAGAGCCACCATAA
66 AGAAGAGCCACCAGAA
* * * *
67615795 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACTAGGACAGATATATG
1 CAGATATATGTGGCAAAGCCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATG
*
67615859 TAGAAGAGCCACCAGAT
65 TAGAAGAGCCACCAGAA
* * *
67615876 TAGATAAATTGTGGCATAGCCACCAG
1 CAGATATA-TGTGGCAAAGCCACCAG
67615902 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 12 0.13
81 62 0.69
82 16 0.18
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (81 bp):
CAGATATATGTGGCAAAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGT
AGAAGAGCCACCAGAA
Found at i:67618601 original size:19 final size:19
Alignment explanation
Indices: 67618577--67618624 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
67618567 ACTTAAGTGG
*
67618577 CTCAATTTTATCTCTCGGT
1 CTCAATTTTATCTCTCAGT
67618596 CTCAATTTTATCTCTCAGT
1 CTCAATTTTATCTCTCAGT
67618615 CTCAATTTTA
1 CTCAATTTTA
67618625 CAAAATTGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.06, T:0.48
Consensus pattern (19 bp):
CTCAATTTTATCTCTCAGT
Found at i:67624806 original size:2 final size:2
Alignment explanation
Indices: 67624799--67624826 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
67624789 CGGCTCTTGC
67624799 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67624827 TTGCACATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67625659 original size:40 final size:40
Alignment explanation
Indices: 67625539--67625729 Score: 219
Period size: 40 Copynumber: 4.8 Consensus size: 40
67625529 GAATGATATC
* * * * *
67625539 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATT
*
67625580 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AATT
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATT
* *
67625619 CCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAATT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATT
*
67625659 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-T
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATT
* *
67625699 CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67625730 AGCTATATCC
Statistics
Matches: 129, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
39 32 0.25
40 71 0.55
41 25 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATT
Found at i:67625744 original size:79 final size:79
Alignment explanation
Indices: 67625536--67625745 Score: 232
Period size: 79 Copynumber: 2.6 Consensus size: 79
67625526 TTCGAATGAT
* * *
67625536 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCA
67625600 TTTGTGCGAGTTACTAA
63 TTTGTGCGAGTTACTAA
* * * * *
67625617 TTCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTA-CTAAATTCGGGTTAAG-TCCCGAAGGCA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATA-TCCGGTTAAGAT-CCGAAGGCA
67625679 TTTGTGCGAGTTACTATA
63 TTTGTGCGAGTTACTA-A
* *
67625697 AT-CGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
67625746 ATTCTGAAGG
Statistics
Matches: 107, Mismatches: 15, Indels: 16
0.78 0.11 0.12
Matches are distributed among these distances:
78 1 0.01
79 53 0.50
80 42 0.39
81 11 0.10
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAA
Found at i:67631912 original size:29 final size:29
Alignment explanation
Indices: 67631836--67631935 Score: 83
Period size: 29 Copynumber: 3.4 Consensus size: 29
67631826 TAAAGTAAAA
* * **
67631836 TAACAAAACATAGTGGCATTGAAGTGCAT
1 TAACAAAATAGAGTGGCATCAAAGTGCAT
* * * * * * *
67631865 TATCATAACAGAATAGCATCGAAGTGCTT
1 TAACAAAATAGAGTGGCATCAAAGTGCAT
*
67631894 TAATAAAATAGAGTGGCATCAAAGTGCAT
1 TAACAAAATAGAGTGGCATCAAAGTGCAT
*
67631923 TAACAGAATAGAG
1 TAACAAAATAGAG
67631936 AGCACATTAA
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (29 bp):
TAACAAAATAGAGTGGCATCAAAGTGCAT
Found at i:67634727 original size:26 final size:26
Alignment explanation
Indices: 67634698--67634753 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
67634688 TGGTACAAAT
67634698 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
67634724 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
67634750 TGAT
1 TGAT
67634754 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:67636172 original size:28 final size:26
Alignment explanation
Indices: 67636141--67636215 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
67636131 AAAAGTAGCT
* *
67636141 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-ATGCA
* * *
67636169 AAATTATTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGATGCA
*
67636195 AAATTACCATTATACCCCTAG
1 AAATTACTATTATACCCCTAG
67636216 GGTTACTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 21 0.54
27 1 0.03
28 17 0.44
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGATGCA
Found at i:67636360 original size:27 final size:27
Alignment explanation
Indices: 67636323--67636460 Score: 167
Period size: 27 Copynumber: 5.1 Consensus size: 27
67636313 AAGCGTCCTA
*
67636323 GTGGCTATGCCACAATTATCTGATCTA
1 GTGGCTATGCCACAATTATCTGATCTG
*
67636350 GTGGCTCTGCCAC-ATATATCTG-TCCTG
1 GTGGCTATGCCACAAT-TATCTGAT-CTG
67636377 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTATGCCACAATTATCTGATCTG
* *
67636404 GTGGCTTTGCCAC-ATATATCTGTTCTG
1 GTGGCTATGCCACAAT-TATCTGATCTG
*
67636431 GTGGCTCTGCCACAA-TATCTGTATCTG
1 GTGGCTATGCCACAATTATCTG-ATCTG
67636458 GTG
1 GTG
67636461 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
26 11 0.11
27 82 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTATGCCACAATTATCTGATCTG
Found at i:67636457 original size:54 final size:54
Alignment explanation
Indices: 67636317--67636478 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
67636307 TAGAGGAAGC
* * *
67636317 GTCCTAGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
67636371 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
* * * * *
67636425 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTTTGCCACATATATCT
67636478 G
1 G
67636479 GCAGCTTCGC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 13 0.13
54 86 0.87
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
Found at i:67636471 original size:27 final size:27
Alignment explanation
Indices: 67636323--67636478 Score: 139
Period size: 27 Copynumber: 5.8 Consensus size: 27
67636313 AAGCGTCCTA
*
67636323 GTGGCTAT-GCCACAATTATCTG-ATCTA
1 GTGGCT-TCGCCACAA-TATCTGTATCTG
*
67636350 GTGGC-TCTGCCACATATATCTGT-CCTG
1 GTGGCTTC-GCCACA-ATATCTGTATCTG
67636377 GTGGCTAT-GCCACAATTATCTG-ATCTG
1 GTGGCT-TCGCCACAA-TATCTGTATCTG
*
67636404 GTGGCTTTGCCACATATATCTGT-TCTG
1 GTGGCTTCGCCACA-ATATCTGTATCTG
67636431 GTGGC-TCTGCCACAATATCTGTATCTG
1 GTGGCTTC-GCCACAATATCTGTATCTG
* *
67636458 GTGACTTCGTCACAATATCTG
1 GTGGCTTCGCCACAATATCTG
67636479 GCAGCTTCGC
Statistics
Matches: 109, Mismatches: 6, Indels: 28
0.76 0.04 0.20
Matches are distributed among these distances:
25 1 0.01
26 11 0.10
27 92 0.84
28 4 0.04
29 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
GTGGCTTCGCCACAATATCTGTATCTG
Found at i:67636472 original size:81 final size:80
Alignment explanation
Indices: 67636323--67636478 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 80
67636313 AAGCGTCCTA
*
67636323 GTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCC
1 GTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
67636388 ACAATTATCTGATCTG
66 ACAA-TATCTGATCTG
* * * *
67636404 GTGGCTTTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT-TC
1 GTGGCTATGCCACAAT-TATCTGATCTAGTGGCTCTGCCACATATATCTGT-CCTGGTGACTAT-
*
67636466 GTCACAATATCTG
63 GCCACAATATCTG
67636479 GCAGCTTCGC
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
80 17 0.26
81 49 0.74
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
GTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCC
ACAATATCTGATCTG
Found at i:67645767 original size:17 final size:17
Alignment explanation
Indices: 67645719--67645784 Score: 71
Period size: 17 Copynumber: 3.7 Consensus size: 17
67645709 AAAAGTTCTT
*
67645719 AAAATATTAAAAATTTAA
1 AAAATA-TAAAAATATAA
*
67645737 TAAAATTTACAAAATAT-A
1 -AAAATATA-AAAATATAA
67645755 AAAATATAAAAAATATAA
1 AAAATAT-AAAAATATAA
67645773 AAAATATAAAAA
1 AAAATATAAAAA
67645785 AAACCATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 18 0.44
18 12 0.29
19 11 0.27
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATATAAAAATATAA
Found at i:67645785 original size:9 final size:9
Alignment explanation
Indices: 67645719--67645785 Score: 82
Period size: 9 Copynumber: 7.4 Consensus size: 9
67645709 AAAAGTTCTT
*
67645719 AAAATATTA
1 AAAATATAA
*
67645728 AAAATTTAA
1 AAAATATAA
* *
67645737 TAAAATTTAC
1 -AAAATATAA
67645747 AAAATAT-A
1 AAAATATAA
67645755 AAAATATAA
1 AAAATATAA
67645764 AAAATATAA
1 AAAATATAA
67645773 AAAATATAA
1 AAAATATAA
67645782 AAAA
1 AAAA
67645786 AACCATTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
8 7 0.14
9 36 0.71
10 8 0.16
ACGTcount: A:0.72, C:0.01, G:0.00, T:0.27
Consensus pattern (9 bp):
AAAATATAA
Found at i:67646060 original size:41 final size:41
Alignment explanation
Indices: 67645993--67646100 Score: 139
Period size: 41 Copynumber: 2.6 Consensus size: 41
67645983 AAAATCATTC
* * *
67645993 TCGATACCT-TACATAGAGTATAGATATATTTACCCTGAGTA
1 TCGATACCTGCACAAAG-GTATCGATATATTTACCCTGAGTA
*
67646034 TTGATACCTG-AGCAAAGGTATCGATATATTTACCCTGAGTA
1 TCGATACCTGCA-CAAAGGTATCGATATATTTACCCTGAGTA
*
67646075 TCGATACTTGCACAAAGGTATCGATA
1 TCGATACCTGCACAAAGGTATCGATA
67646101 CCAAATCTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
41 54 0.92
42 5 0.08
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (41 bp):
TCGATACCTGCACAAAGGTATCGATATATTTACCCTGAGTA
Found at i:67648329 original size:45 final size:45
Alignment explanation
Indices: 67648278--67648368 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
67648268 CCAAAACATG
* *
67648278 TGTCACATACATCATGAACTCAGACCAGAACTCAATGAGCTCAGA
1 TGTCACATACACCATGAACTCAGACCACAACTCAATGAGCTCAGA
* * *
67648323 TGTCACATATACCATGAACTCAGACTACAACTCAATGAGTTCAGA
1 TGTCACATACACCATGAACTCAGACCACAACTCAATGAGCTCAGA
67648368 T
1 T
67648369 CACATAGTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.23
Consensus pattern (45 bp):
TGTCACATACACCATGAACTCAGACCACAACTCAATGAGCTCAGA
Found at i:67649806 original size:39 final size:39
Alignment explanation
Indices: 67649763--67649903 Score: 158
Period size: 39 Copynumber: 3.6 Consensus size: 39
67649753 CATATCCACT
* * *
67649763 TTTAAGTACATATCACATTACAT-ATATAATTACATAACA
1 TTTAAGCACATATCACAATAC-TCATATAATCACATAACA
*
67649802 TTTAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCACATATCACAATACTCATATAATCACATAACA
** * * * **
67649841 CATAAGCATATATAACAATACGCATATAATCACGGAACA
1 TTTAAGCACATATCACAATACTCATATAATCACATAACA
*
67649880 TTTAAGCATATATCACAATACTCA
1 TTTAAGCACATATCACAATACTCA
67649904 AAAACATGTT
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 1 0.01
39 86 0.99
ACGTcount: A:0.46, C:0.19, G:0.05, T:0.30
Consensus pattern (39 bp):
TTTAAGCACATATCACAATACTCATATAATCACATAACA
Found at i:67649867 original size:16 final size:17
Alignment explanation
Indices: 67649835--67649868 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
67649825 ATATAATCAC
67649835 ATAACACATAAGCATAT
1 ATAACACATAAGCATAT
*
67649852 ATAACA-ATACGCATAT
1 ATAACACATAAGCATAT
67649868 A
1 A
67649869 ATCACGGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.18, G:0.06, T:0.24
Consensus pattern (17 bp):
ATAACACATAAGCATAT
Found at i:67654187 original size:30 final size:30
Alignment explanation
Indices: 67654147--67654263 Score: 121
Period size: 30 Copynumber: 3.9 Consensus size: 30
67654137 CAAAAAATAA
*
67654147 AAATTGCATTTTGACCCCTAAACTTT-TTCT
1 AAATTTCATTTTGACCCCTAAACTTTCTT-T
*
67654177 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCTTT
* * * * *
67654207 AAATTTCACTTAGGCCCCTAAACTTCCCTT
1 AAATTTCATTTTGACCCCTAAACTTTCTTT
* * *
67654237 AAATTGCATTTT-AACCCTAAATTTTCT
1 AAATTTCATTTTGACCCCTAAACTTTCT
67654264 AAAAATTACA
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
29 10 0.14
30 58 0.83
31 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.05, T:0.43
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCTTT
Found at i:67655015 original size:31 final size:34
Alignment explanation
Indices: 67654947--67655019 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
67654937 GGGTGATATG
* *
67654947 TTAAGTTAGTGGGTTGGGTTGGTTGTGTTGGGTTTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGTT--GATTA
*
67654983 TTAAGTTAGTGAGTTGGGTTGGTT-TGTATTATTA
1 TTAAGTTAGTGAGTTGGGTTGGTTGTGT-TGATTA
67655017 TTA
1 TTA
67655020 TTATTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 6 0.18
35 3 0.09
36 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.34, T:0.49
Consensus pattern (34 bp):
TTAAGTTAGTGAGTTGGGTTGGTTGTGTTGATTA
Found at i:67655017 original size:3 final size:3
Alignment explanation
Indices: 67655009--67655069 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
67654999 GGTTGGTTTG
67655009 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67655057 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
67655070 TTAAATTAGT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:67666918 original size:14 final size:14
Alignment explanation
Indices: 67666899--67666928 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67666889 GCTGAGGTAA
*
67666899 TTTCAATTTATGTT
1 TTTCAATTTATATT
67666913 TTTCAATTTATATT
1 TTTCAATTTATATT
67666927 TT
1 TT
67666929 GTAAAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.07, G:0.03, T:0.67
Consensus pattern (14 bp):
TTTCAATTTATATT
Found at i:67666969 original size:87 final size:86
Alignment explanation
Indices: 67666758--67667410 Score: 606
Period size: 87 Copynumber: 7.8 Consensus size: 86
67666748 GTTTTTTCTG
* * * * * * *
67666758 TTTTCAAAATTCAACTCATAATGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
1 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
* *
67666823 ATTACTGTTTGTCAA---A-A
66 ATTTCTGTTTTTCAATTTATA
*** * * *
67666840 --AAAAAAAAGTCGACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTC
1 TTTTTAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
67666903 AATTTATGTTTTTCAATTTATA
65 AATTTCTGTTTTTCAATTTATA
* * *
67666925 TTTTGTAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTATTTTT
1 TTTT-TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* * *
67666990 AATTTCTGTTCTT-AA-TGACTG
65 AATTTCTGTTTTTCAATTTA-TA
*
67667011 TTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCA
1 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
* *
67667074 ATTTCTATTTTTTCTAATCTATA
66 ATTTCT-GTTTTTC-AATTTATA
* * *
67667097 TTTTTAAAAAATCAACTAATATTGCGAGAGGTGAATTGAGCCTCAGGACACGTTGAGGTATTTTC
1 TTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* * *
67667162 GATTTCTGTTTTTCAGTTTATG
65 AATTTCTGTTTTTCAATTTATA
* * * * *
67667184 TTTTTCAAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCGCGGGACACGCTGAGGTAATTTC
1 TTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
67667249 AATTCCTG--TTT---TTT-T-
65 AATTTCTGTTTTTCAATTTATA
** ** * **
67667264 TTTAAAAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
1 TTTTTAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
*
67667329 AATTTCTGTCTTTC-----A-A
65 AATTTCTGTTTTTCAATTTATA
*
67667345 -----AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTT
1 TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTT
67667405 CAATTT
64 CAATTT
67667411 TTTGCTTTTT
Statistics
Matches: 472, Mismatches: 75, Indels: 53
0.79 0.12 0.09
Matches are distributed among these distances:
75 32 0.07
76 5 0.01
77 21 0.04
79 5 0.01
80 58 0.12
81 60 0.13
82 6 0.01
83 61 0.13
84 5 0.01
85 7 0.01
86 15 0.03
87 127 0.27
88 11 0.02
89 59 0.12
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (86 bp):
TTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTCTGTTTTTCAATTTATA
Found at i:67667156 original size:172 final size:169
Alignment explanation
Indices: 67666852--67667410 Score: 591
Period size: 172 Copynumber: 3.3 Consensus size: 169
67666842 AAAAAAGTCG
*
67666852 ACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAA-TT-TATGTTTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTAT-TTTT
* * *
67666915 TC-AATTTATATTTTGT-AAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGC
65 TCTAA-TTATATTTT-TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
*
67666978 TGAGGTATTTTTAATTTCTGTTCTTAATGACTGTTTTTAAATCA
128 TGAGGTATTTTCAATTTCTGTTCTT-AT-ACTGTTTTTAAATCA
* *
67667022 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTATTTTTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTTTTT
* * *
67667087 CTAATCTATATTTTTAAAAAATCAACTAATATTGCGAGAGGTGAATTGAGCCTCAGGACACGTTG
66 CTAAT-TATATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
* *
67667152 AGGTATTTTCGATTTCTGTTTTTCAGTTTA-TGTTTTTCAAAAATCA
130 AGGTATTTTCAATTTCTGTTCTT-A---TACTGTTTTT---AAATCA
* * * * * *
67667198 ATTCATATTACGAGAGGTGAGTTGAGCCGCGGGACACGCTGAGGTAATTTCAATTCCTGTTTTTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTTTTT
** *
67667263 -T--TT-TA-----AAAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTG
66 CTAATTATATTTTTAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTG
****
67667319 AGGTATTTTCAATTTCTG-TCTT-T-C---AAAAAAATCA
130 AGGTATTTTCAATTTCTGTTCTTATACTGTTTTTAAATCA
* *
67667353 ACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTCAATTT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTAATTTCAATTT
67667411 TTTGCTTTTT
Statistics
Matches: 335, Mismatches: 39, Indels: 43
0.80 0.09 0.10
Matches are distributed among these distances:
155 34 0.10
157 21 0.06
161 1 0.00
166 9 0.03
167 55 0.16
170 50 0.15
171 12 0.04
172 79 0.24
173 8 0.02
174 1 0.00
175 2 0.01
176 63 0.19
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.36
Consensus pattern (169 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTATTTTTT
CTAATTATATTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
GGTATTTTCAATTTCTGTTCTTATACTGTTTTTAAATCA
Found at i:67667219 original size:259 final size:255
Alignment explanation
Indices: 67666842--67667335 Score: 672
Period size: 259 Copynumber: 1.9 Consensus size: 255
67666832 TGTCAAAAAA
* * *
67666842 AAAAAAGTCGACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAGTCAACTAATATTGCGAGAGGTGAATTGAACCTCAGGACACGCTGAGGTAATTTCAATT
* * *
67666907 TATGTTTTTCAATTTATATTTTGTAAAAATCAATTCATATTGCGAGAGGTGAGTTGAGCCTCATG
66 TATGTTTTTCAATTTATATTTTGTAAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCGCAGG
* * * *
67666972 ACACGCTGAGGTATTTTTAATTTCTGTTCTTAATGACTGTTTT-TAAA-TCAACTCATATTGCGA
131 ACACGCTGAGGTAATTTCAATTCCTGTT-TT--T---T-TTTTAAAAAGTCAACTCATATTGCGA
** *
67667035 GAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTATTTTTTCTAATCTATATTT
189 GAAATGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCTATTTTTTCTAATCTATATTT
67667100 TT
254 TT
* * * *
67667102 AAAAAA-TCAACTAATATTGCGAGAGGTGAATTGAGCCTCAGGACACGTTGAGGTATTTTCGATT
1 AAAAAAGTCAACTAATATTGCGAGAGGTGAATTGAACCTCAGGACACGCTGAGGTAATTTCAATT
* * * *
67667166 TCTGTTTTTCAGTTTATGTTTT-TCAAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCGCGG
66 TATGTTTTTCAATTTATATTTTGT-AAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCGCAG
67667230 GACACGCTGAGGTAATTTCAATTCCTGTTTTTTTTTTAAAAAAAGTCAACTCATATTGCGAGAAA
130 GACACGCTGAGGTAATTTCAATTCCTGTTTTTTTTTT--AAAAAGTCAACTCATATTGCGAGAAA
*
67667295 TGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCT
193 TGAGTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCT
67667336 GTCTTTCAAA
Statistics
Matches: 207, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
252 4 0.02
253 1 0.00
255 3 0.01
256 58 0.28
258 3 0.01
259 132 0.64
260 6 0.03
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.36
Consensus pattern (255 bp):
AAAAAAGTCAACTAATATTGCGAGAGGTGAATTGAACCTCAGGACACGCTGAGGTAATTTCAATT
TATGTTTTTCAATTTATATTTTGTAAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCGCAGG
ACACGCTGAGGTAATTTCAATTCCTGTTTTTTTTTTAAAAAGTCAACTCATATTGCGAGAAATGA
GTTGAGCCTCAAGACACACTGAGGTATTTTCAATTTCTATTTTTTCTAATCTATATTTTT
Found at i:67667446 original size:78 final size:75
Alignment explanation
Indices: 67667182--67667455 Score: 293
Period size: 80 Copynumber: 3.6 Consensus size: 75
67667172 TTTCAGTTTA
* * * * *
67667182 TGTTTTTC-AAAAATCAATTCATATTACGAGAGGTGAGTTGAGCCGCGGGACACGCTGAGGTAAT
1 TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
67667246 TTCAATTCCTGTTT
66 TTCAA-T--T-TTT
* * ** * **
67667260 TTTTTTTAAAAAAAGTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTAT
1 TGTTTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAT
*
67667325 TTTCAA-TTTC
65 TTTCAATTTTT
* *
67667335 TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGT
1 TGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGT
67667400 ATTTTCAATTTTT
63 ATTTTCAATTTTT
*
67667413 TGCTTTTTCAAAAGATCAACTCATAATT-CGAGAGGTGAGTTGA
1 TG-TTTTTCAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGA
67667456 ACTTCGGGTT
Statistics
Matches: 162, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
75 39 0.24
76 7 0.04
77 18 0.11
78 39 0.24
79 13 0.08
80 46 0.28
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34
Consensus pattern (75 bp):
TGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
TTCAATTTTT
Found at i:67667749 original size:29 final size:29
Alignment explanation
Indices: 67667688--67667806 Score: 134
Period size: 30 Copynumber: 4.1 Consensus size: 29
67667678 CAAAAAATAA
67667688 AAATTGCATTTTGACCCCTAAACTTTTTCT
1 AAATTGCATTTTGACCCCTAAACTTTTT-T
* *
67667718 AAATTTCATTTTGACCCTTAAACTTTTTT
1 AAATTGCATTTTGACCCCTAAACTTTTTT
* * * *
67667747 AAATTTCACTTAGACCCCTAAACATTCTTT
1 AAATTGCATTTTGACCCCTAAAC-TTTTTT
* *
67667777 AAATTGCATTTT-AACCCTAAA-TTTTCT
1 AAATTGCATTTTGACCCCTAAACTTTTTT
67667804 AAA
1 AAA
67667807 AATTACATTT
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
27 7 0.09
29 29 0.38
30 40 0.53
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.43
Consensus pattern (29 bp):
AAATTGCATTTTGACCCCTAAACTTTTTT
Found at i:67667810 original size:59 final size:60
Alignment explanation
Indices: 67667685--67667810 Score: 143
Period size: 59 Copynumber: 2.1 Consensus size: 60
67667675 TTTCAAAAAA
* * * * *
67667685 TAAAAATTGCATTTTGACCCCTAAACTTTTTCTAAATTTCATTTTGACCCTTAAACTTTT
1 TAAAAATTGCACTTAGACCCCTAAACTTCTTCTAAATTGCATTTTAACCCTTAAACTTTT
* *
67667745 T-TAAATTTCACTTAGACCCCTAAACATTCTT-TAAATTGCATTTTAACCC-TAAA-TTTT
1 TAAAAATTGCACTTAGACCCCTAAAC-TTCTTCTAAATTGCATTTTAACCCTTAAACTTTT
67667802 CTAAAAATT
1 -TAAAAATT
67667811 ACATTTAGCC
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
57 4 0.07
58 5 0.09
59 41 0.75
60 5 0.09
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (60 bp):
TAAAAATTGCACTTAGACCCCTAAACTTCTTCTAAATTGCATTTTAACCCTTAAACTTTT
Found at i:67668046 original size:15 final size:16
Alignment explanation
Indices: 67668028--67668065 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
67668018 AAAAGAGCAA
67668028 AAAAAAAATTT-CAGC
1 AAAAAAAATTTCCAGC
*
67668043 AAAAAAATTTTCCAGC
1 AAAAAAAATTTCCAGC
67668059 AAAAAAA
1 AAAAAAA
67668066 CAGAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.63, C:0.13, G:0.05, T:0.18
Consensus pattern (16 bp):
AAAAAAAATTTCCAGC
Found at i:67668046 original size:16 final size:17
Alignment explanation
Indices: 67668027--67668065 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
67668017 AAAAAGAGCA
67668027 AAAAAAAAATTT-CAGC
1 AAAAAAAAATTTCCAGC
*
67668043 -AAAAAAATTTTCCAGC
1 AAAAAAAAATTTCCAGC
67668059 AAAAAAA
1 AAAAAAA
67668066 CAGAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 10 0.50
16 4 0.20
17 6 0.30
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAAAAAAATTTCCAGC
Found at i:67668564 original size:3 final size:3
Alignment explanation
Indices: 67668556--67668613 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
67668546 GGTTGGTTTA
67668556 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67668604 TAT TAT TAT T
1 TAT TAT TAT T
67668614 TTAAATTAGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:67670001 original size:9 final size:9
Alignment explanation
Indices: 67669984--67670043 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
67669974 AATGTGTATG
*
67669984 TATTATATA
1 TATTTTATA
67669993 TATTTTATA
1 TATTTTATA
*
67670002 CATTTTATA
1 TATTTTATA
*
67670011 TATTATATA
1 TATTTTATA
*
67670020 TA-TATATA
1 TATTTTATA
67670028 T-TTATTATA
1 TATT-TTATA
67670037 T-TTTTAT
1 TATTTTAT
67670044 GTATATATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
8 12 0.27
9 32 0.73
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (9 bp):
TATTTTATA
Found at i:67670052 original size:19 final size:19
Alignment explanation
Indices: 67669987--67670052 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
67669977 GTGTATGTAT
* *
67669987 TATATATATTTTATACAT-
1 TATATATATTATATATATA
*
67670005 TTTATATATTATATATATA
1 TATATATATTATATATATA
* * *
67670024 TATATTTATTATATTTTTA
1 TATATATATTATATATATA
*
67670043 TGTATATATT
1 TATATATATT
67670053 TTTAATATCA
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
18 15 0.39
19 23 0.61
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (19 bp):
TATATATATTATATATATA
Found at i:67670056 original size:25 final size:24
Alignment explanation
Indices: 67670006--67670082 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 24
67669996 TTTATACATT
* *
67670006 TTATATATTATATATATATATATTTA
1 TTATAT-TTTTAT-TATATATTTTTA
67670032 TTATATTTTTATGTATATATTTTTA
1 TTATATTTTTAT-TATATATTTTTA
* *
67670057 ATATCA-TATTATTCATATATTTTTA
1 TTAT-ATTTTTATT-ATATATTTTTA
67670082 T
1 T
67670083 ATTATGTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.02
25 35 0.81
26 7 0.16
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (24 bp):
TTATATTTTTATTATATATTTTTA
Found at i:67670065 original size:14 final size:14
Alignment explanation
Indices: 67670013--67670076 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
67670003 ATTTTATATA
*
67670013 TTATATATATATATA
1 TTATATATATAT-TT
67670028 TT-TAT-TATATTT
1 TTATATATATATTT
*
67670040 TTATGTATATATTT
1 TTATATATATATTT
67670054 TTA-ATATCATATTAT
1 TTATATAT-ATATT-T
*
67670069 TCATATAT
1 TTATATAT
67670077 TTTTATATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
12 3 0.08
13 10 0.25
14 18 0.45
15 5 0.12
16 4 0.10
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (14 bp):
TTATATATATATTT
Found at i:67670097 original size:44 final size:44
Alignment explanation
Indices: 67670022--67670124 Score: 111
Period size: 44 Copynumber: 2.2 Consensus size: 44
67670012 ATTATATATA
* * *
67670022 TATATATTTATTATATTTTTATGTATATATTTTTAATA-TCATATTAT-
1 TATATATTT-TTATA---TTATGTAAATATTTTCAATACT-ACATTATG
67670069 TCATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
1 T-ATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
67670114 TATATATTTTT
1 TATATATTTTT
67670125 GTCTATATTG
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
44 34 0.68
45 2 0.04
47 6 0.12
48 8 0.16
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (44 bp):
TATATATTTTTATATTATGTAAATATTTTCAATACTACATTATG
Found at i:67670437 original size:30 final size:30
Alignment explanation
Indices: 67670401--67670499 Score: 135
Period size: 30 Copynumber: 3.3 Consensus size: 30
67670391 CTAGCCTTTG
*
67670401 CCACCACCAACTCCACTAACCACACTTACT
1 CCACCACCAACTCCACTAACCACACTTGCT
*
67670431 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAACCACACTTGCT
* * * *
67670461 CCACTACCTACTCCATTATCCACACTTGCT
1 CCACCACCAACTCCACTAACCACACTTGCT
*
67670491 CTACCACCA
1 CCACCACCA
67670500 CTTGTACCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.28, C:0.48, G:0.03, T:0.20
Consensus pattern (30 bp):
CCACCACCAACTCCACTAACCACACTTGCT
Found at i:67671935 original size:79 final size:82
Alignment explanation
Indices: 67671795--67671979 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
67671785 TCGAATGATG
* * *
67671795 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
67671859 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
67671875 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
67671937 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
67671955 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67671980 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:67671987 original size:40 final size:40
Alignment explanation
Indices: 67671796--67671987 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
67671786 CGAATGATGT
* * * * *
67671796 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
67671836 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
67671876 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
67671915 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
67671955 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
67671988 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:67679040 original size:39 final size:39
Alignment explanation
Indices: 67678942--67679131 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
67678932 CGAATGATGT
* * * *
67678942 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * * *
67678982 CCAGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
67679021 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
67679060 CCCGGGTTAAGTCCC-AAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
67679100 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
67679132 CGTTATATCC
Statistics
Matches: 119, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
39 64 0.54
40 48 0.40
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:67682111 original size:9 final size:10
Alignment explanation
Indices: 67682063--67682159 Score: 58
Period size: 11 Copynumber: 9.6 Consensus size: 10
67682053 TGTGTATGTA
67682063 TTATATATAT
1 TTATATATAT
*
67682073 TT-TATACATT
1 TTATATATA-T
67682083 TTATATATAT
1 TTATATATAT
*
67682093 TATATGTATAT
1 T-TATATATAT
*
67682104 TTATTATATTT
1 TTA-TATATAT
67682115 TTATGTATATAT
1 TTA--TATATAT
*
67682127 TTTTA-ATA-
1 TTATATATAT
*
67682135 TCATAT-TAT
1 TTATATATAT
* *
67682144 TCATATATTT
1 TTATATATAT
67682154 TTATAT
1 TTATAT
67682160 TATGTAAATA
Statistics
Matches: 67, Mismatches: 12, Indels: 16
0.71 0.13 0.17
Matches are distributed among these distances:
8 5 0.07
9 14 0.21
10 18 0.27
11 22 0.33
12 8 0.12
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (10 bp):
TTATATATAT
Found at i:67682119 original size:21 final size:21
Alignment explanation
Indices: 67682063--67682124 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
67682053 TGTGTATGTA
* **
67682063 TTATATATATTTTATACAT-T
1 TTATATATATTATATGTATAT
67682083 TTATATATATTATATGTATAT
1 TTATATATATTATATGTATAT
*
67682104 TTAT-TATATTTTTATGTATAT
1 TTATATATA-TTATATGTATAT
67682125 ATTTTTAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 20 0.56
21 16 0.44
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (21 bp):
TTATATATATTATATGTATAT
Found at i:67682143 original size:25 final size:25
Alignment explanation
Indices: 67682115--67682199 Score: 69
Period size: 25 Copynumber: 3.6 Consensus size: 25
67682105 TATTATATTT
67682115 TTATGTATATATTTTTAATATCATA
1 TTATGTATATATTTTTAATATCATA
67682140 TTAT-TCATATA--TTT--T-T-ATA
1 TTATGT-ATATATTTTTAATATCATA
* * *
67682159 TTATGTAAATATTTTCAATA-CTACA
1 TTATGTATATATTTTTAATATC-ATA
67682184 TTATGTATATATTTTT
1 TTATGTATATATTTTT
67682200 GTCTATATTG
Statistics
Matches: 46, Mismatches: 5, Indels: 18
0.67 0.07 0.26
Matches are distributed among these distances:
19 11 0.24
20 2 0.04
21 3 0.07
23 4 0.09
24 1 0.02
25 25 0.54
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAATATCATA
Found at i:67682173 original size:44 final size:44
Alignment explanation
Indices: 67682115--67682199 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
67682105 TATTATATTT
* * *
67682115 TTATGTATATATTTTTAATA-TCATATTAT-TCATATATTTTTATA
1 TTATGTAAATATTTTCAATACT-ACATTATGT-ATATATTTTTATA
67682159 TTATGTAAATATTTTCAATACTACATTATGTATATATTTTT
1 TTATGTAAATATTTTCAATACTACATTATGTATATATTTTT
67682200 GTCTATATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (44 bp):
TTATGTAAATATTTTCAATACTACATTATGTATATATTTTTATA
Found at i:67682513 original size:30 final size:30
Alignment explanation
Indices: 67682476--67682574 Score: 144
Period size: 30 Copynumber: 3.3 Consensus size: 30
67682466 CTAGCCTTTG
* *
67682476 CCACCACCAACTCCACTAACCATACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
67682506 TCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
67682536 GCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
67682566 CCACCACCA
1 CCACCACCA
67682575 CTTGTACCTA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.27, C:0.47, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:67686698 original size:14 final size:16
Alignment explanation
Indices: 67686686--67686790 Score: 93
Period size: 17 Copynumber: 6.0 Consensus size: 16
67686676 AATGATATGT
67686686 AATCTTAGATATGATA
1 AATCTTAGATATGATA
*
67686702 CAATCTTAGATATGATTGC
1 -AATCTTAGATATGA-T-A
*
67686721 AATCTTAGATTTGATA
1 AATCTTAGATATGATA
*
67686737 TGCAATCTTAGATATTATA
1 ---AATCTTAGATATGATA
*
67686756 CAATCTTAGATATGATTGC
1 -AATCTTAGATATGA-T-A
67686775 AATCTTAGATATGATA
1 AATCTTAGATATGATA
67686791 TGCAATCTTA
Statistics
Matches: 73, Mismatches: 8, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
17 30 0.41
18 29 0.40
19 14 0.19
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.39
Consensus pattern (16 bp):
AATCTTAGATATGATA
Found at i:67686726 original size:35 final size:36
Alignment explanation
Indices: 67686677--67686802 Score: 168
Period size: 35 Copynumber: 3.5 Consensus size: 36
67686667 ATAATCTTCA
*
67686677 ATGATATGTAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
*
67686713 ATGAT-TGCAATCTTAGATTTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
* *
67686750 AT--TATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
67686785 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
67686803 AGATATGATA
Statistics
Matches: 78, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
35 31 0.40
36 20 0.26
37 27 0.35
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:67686736 original size:54 final size:54
Alignment explanation
Indices: 67686677--67686802 Score: 225
Period size: 54 Copynumber: 2.3 Consensus size: 54
67686667 ATAATCTTCA
*
67686677 ATGATATGTAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
* *
67686731 TTGATATGCAATCTTAGATATTATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
67686785 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
67686803 AGATATGATA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:67686809 original size:17 final size:19
Alignment explanation
Indices: 67686677--67686825 Score: 184
Period size: 18 Copynumber: 7.9 Consensus size: 19
67686667 ATAATCTTCA
*
67686677 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67686696 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67686713 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
67686731 TTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
67686750 AT--TATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67686767 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
67686785 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTT---AGAT
*
67686807 ATGATATTGTAATCTTAGA
1 ATGATA-TGCAATCTTAGA
67686826 GATTTAATTT
Statistics
Matches: 114, Mismatches: 6, Indels: 19
0.82 0.04 0.14
Matches are distributed among these distances:
17 31 0.27
18 32 0.28
19 30 0.26
20 3 0.03
22 10 0.09
23 8 0.07
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:67690823 original size:2 final size:2
Alignment explanation
Indices: 67690816--67690846 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
67690806 ACATAACCGA
67690816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67690847 AATCAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67691249 original size:43 final size:41
Alignment explanation
Indices: 67691152--67691254 Score: 118
Period size: 43 Copynumber: 2.5 Consensus size: 41
67691142 AATGCCACTA
* *
67691152 TCCCAGACAAT-GTCTTACACAAATCAAATATGATGCCGATG
1 TCCCAGAC-ATGGTCTTACACAAATCAAATATGATGCCAACG
* * *
67691193 TCCTAGACATGGTCTTACACGTAATCACATATTGATGCCAACG
1 TCCCAGACATGGTCTTACAC-AAATCAAATA-TGATGCCAACG
*
67691236 TCCCAGACGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
67691255 TGAGAACACA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.04
41 16 0.31
42 8 0.15
43 26 0.50
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACAAATCAAATATGATGCCAACG
Found at i:67691265 original size:43 final size:43
Alignment explanation
Indices: 67691152--67691267 Score: 107
Period size: 43 Copynumber: 2.7 Consensus size: 43
67691142 AATGCCACTA
* * *
67691152 TCCCAGACAAT-GTCTTACAC--AAATCAAATA-TGATGCCGATG
1 TCCCAGAC-ATGGTCTTACACGTAAA-CACATATTGATGCCAACG
* *
67691193 TCCTAGACATGGTCTTACACGTAATCACATATTGATGCCAACG
1 TCCCAGACATGGTCTTACACGTAAACACATATTGATGCCAACG
* *
67691236 TCCCAGACGTGGTCTTACATG-AGAACACATAT
1 TCCCAGACATGGTCTTACACGTA-AACACATAT
67691268 CAAAATCCTA
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
40 2 0.03
41 16 0.26
42 6 0.10
43 37 0.61
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAAACACATATTGATGCCAACG
Found at i:67694980 original size:2 final size:2
Alignment explanation
Indices: 67694973--67695011 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
67694963 GCATACAAAG
67694973 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67695012 ACATGTATTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:67695097 original size:29 final size:29
Alignment explanation
Indices: 67695060--67695116 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
67695050 TACAAAGTTA
* * *
67695060 TAATTAAATAATGCATGATATACAAAAAG
1 TAATAAAATAATACATGACATACAAAAAG
67695089 TAATAAAATAATACATGACATACAAAAA
1 TAATAAAATAATACATGACATACAAAAA
67695117 AGAGTACTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.60, C:0.09, G:0.07, T:0.25
Consensus pattern (29 bp):
TAATAAAATAATACATGACATACAAAAAG
Found at i:67695208 original size:2 final size:2
Alignment explanation
Indices: 67695203--67695229 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67695193 GATATATGGA
67695203 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
67695230 AATGAAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67695769 original size:13 final size:13
Alignment explanation
Indices: 67695751--67695784 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
67695741 TAAGATATAT
67695751 TAATAATATAAAA
1 TAATAATATAAAA
*
67695764 TAATAATGTAAAA
1 TAATAATATAAAA
67695777 TAATAATA
1 TAATAATA
67695785 ATAATTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
TAATAATATAAAA
Found at i:67698816 original size:93 final size:93
Alignment explanation
Indices: 67698708--67698879 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
67698698 GCCCATAAGT
* * *
67698708 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67698773 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
67698801 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67698866 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
67698880 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67698875 original size:46 final size:46
Alignment explanation
Indices: 67698700--67698875 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
67698690 TGTAACCCGC
* * **
67698700 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
67698746 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* * *
67698796 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
67698839 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67698876 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 65 0.60
47 31 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:67700712 original size:210 final size:210
Alignment explanation
Indices: 67700280--67701083 Score: 1086
Period size: 210 Copynumber: 3.8 Consensus size: 210
67700270 AAATCTGCTT
* * * * * * *
67700280 CTTCGATTTGTTCTCCGATAATACAGAGATGACAAATCATCTTAGATTTGATTCATCATAAGCTC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * * ** * * * **
67700345 GTGAAAACTAAATCAGCTATGTCTTCGATTTGCTCCTTG--TAAGCACA-AG-GAT--G-CCAAA
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAA-TACAGAGAGATAAGATC-TG
* * * * *
67700403 TCATCTTGGATCTTGTTTCAGTC-TAATCGTCTGAAGGTCAGATCTGCTATGTATCTG-CTCTCT
129 TCATCTTGGATC-TGCTTCAG-CGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCT-TCT
** * *
67700466 ATTGAAGTAGAGATGCCAGA
191 ATCAAAGTGGAAATGCCAGA
**
67700486 CTTCGATTCATTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
67700551 GTGAAAGTCAAATCTGCTATATCTTCGATCTGCTCCCCGCTGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
**
67700616 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCCGTCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCTATCAA
67700681 AGTGGAAATGCCAGA
196 AGTGGAAATGCCAGA
* * * * * *
67700696 CTTCGATTTGTTCTCTGATAATACAAAGATGACAAATCATCTTGGATTTTCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
67700761 GTGAAAGCCAAATCAGCTATTTCTTCAATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
* *
67700826 ATCTTGGATCTGCTTCAGTGTAAACATCTGAAGGTGAAATCTGCTATGTGTCTGCCTTCTATCAA
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCTATCAA
*
67700891 AGTGGAAATGCCAAA
196 AGTGGAAATGCCAGA
67700906 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
67700971 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
*
67701036 ATCTTCGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATG
131 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATG
67701084 CTGCGGCTTA
Statistics
Matches: 527, Mismatches: 62, Indels: 14
0.87 0.10 0.02
Matches are distributed among these distances:
206 87 0.17
207 3 0.01
208 4 0.01
209 4 0.01
210 413 0.78
211 15 0.03
212 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (210 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCCTTCTATCAA
AGTGGAAATGCCAGA
Found at i:67708924 original size:15 final size:15
Alignment explanation
Indices: 67708882--67708931 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
67708872 ATAACTTTGA
*
67708882 ATGCAAATG-ATGTG
1 ATGCAAATGCATGAG
67708896 ATG-AAATGCTATGAG
1 ATGCAAATGC-ATGAG
67708911 ATGCAAATGCATGA-
1 ATGCAAATGCATGAG
67708925 ATGCAAA
1 ATGCAAA
67708932 AAAGAATATC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (15 bp):
ATGCAAATGCATGAG
Found at i:67710772 original size:40 final size:39
Alignment explanation
Indices: 67710723--67710903 Score: 133
Period size: 40 Copynumber: 4.6 Consensus size: 39
67710713 GACTAGCTCG
* * *
67710723 ATTGTCTTCGGGACATT-GCCCAGTTATAGTGATTCGCACA
1 ATTGCCTTCGGGACATTAGCCC-GTT-TAGTAACTCGCACA
67710763 ATTGCCTTC-GGA-ATTAGCCCGATTTAGTAACTCGCACGA
1 ATTGCCTTCGGGACATTAGCCCG-TTTAGTAACTCGCAC-A
* *
67710802 A-TGCCTTCGGGAC-TTAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGACATTAGCCC-G-TTTAGTAACTCGCACA
* * * *
67710841 AATGCCTTCGGGAC-TTAACCCGGTTTTAGTCACTTAGCACA
1 ATTGCCTTCGGGACATTAGCCC-G-TTTAGTAAC-TCGCACA
**
67710882 AAAGCCTTCGGGAC-TTAGCCCG
1 ATTGCCTTCGGGACATTAGCCCG
67710904 GATACCATTC
Statistics
Matches: 122, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
38 22 0.18
39 22 0.18
40 53 0.43
41 25 0.20
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (39 bp):
ATTGCCTTCGGGACATTAGCCCGTTTAGTAACTCGCACA
Found at i:67710893 original size:41 final size:40
Alignment explanation
Indices: 67710785--67710904 Score: 159
Period size: 40 Copynumber: 3.0 Consensus size: 40
67710775 ATTAGCCCGA
* * *
67710785 TTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGGT
1 TTTAGTAACTAGCACAAAAGCCTTCGGGACTTAACCCGGT
* * *
67710825 TTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGT
1 TTTAGTAACTAGCACAAAAGCCTTCGGGACTTAACCCGGT
* *
67710865 TTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 TTTAGTAAC-TAGCACAAAAGCCTTCGGGACTTAACCCGG
67710905 ATACCATTCG
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 45 0.62
41 27 0.38
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
TTTAGTAACTAGCACAAAAGCCTTCGGGACTTAACCCGGT
Found at i:67710904 original size:81 final size:78
Alignment explanation
Indices: 67710756--67710904 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 78
67710746 TTATAGTGAT
* * * * *
67710756 TCGCACAATTGCCTTCGGAATTAGCCCGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACC
1 TCGCACAAATGCCTTCGGAATTAACCCGATTTAGTAACTAGCACAAAAGCCTTCGGGACTTAACC
67710821 CGGTTTTGGTAAC
66 CGGTTTTGGTAAC
* * *
67710834 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTC-GGAATTAACCC-GATTTAGTAAC-TAGCACAAAAGCCTTCGGGACTTA
*
67710899 GCCCGG
63 ACCCGG
67710905 ATACCATTCG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
78 15 0.25
79 9 0.15
80 9 0.15
81 26 0.44
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
TCGCACAAATGCCTTCGGAATTAACCCGATTTAGTAACTAGCACAAAAGCCTTCGGGACTTAACC
CGGTTTTGGTAAC
Found at i:67718853 original size:40 final size:38
Alignment explanation
Indices: 67718809--67718975 Score: 127
Period size: 40 Copynumber: 4.2 Consensus size: 38
67718799 TCGGGACATT
* * *
67718809 GCCCGGTTATAGTGATTCGCACAATTGCCTTCTAGAATTA
1 GCCCGGTT-TAGTAACTCGCACAA-TGCCTTCGAGAATTA
*
67718849 GCCCGGATTTAGTAACTCGCACGAATGCCTTCGAGACTTA
1 GCCCGG-TTTAGTAACTCGCAC-AATGCCTTCGAGAATTA
* * * *
67718889 ACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTA
1 GCCCGG-TTTAGTAACTCGCAC-AATGCCTTCGAGAATTA
* * * * * *
67718929 ACCCGGTTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 GCCCGG-TTTAGTAAC-TCGCAC-AATGCCTTCGAGAATTA
67718970 GCCCGG
1 GCCCGG
67718976 ATACCATTCG
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
40 79 0.72
41 31 0.28
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (38 bp):
GCCCGGTTTAGTAACTCGCACAATGCCTTCGAGAATTA
Found at i:67718909 original size:80 final size:81
Alignment explanation
Indices: 67718825--67718975 Score: 187
Period size: 80 Copynumber: 1.9 Consensus size: 81
67718815 TTATAGTGAT
* * * * * *
67718825 TCGCACAATTGCCTTCTAGAATTAGCCCGGATTTAGTAAC-TCGCACGAATGCCTTCGAGACTTA
1 TCGCACAAATGCCTTCGAGAATTAACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGAGACTTA
67718889 ACCCGGTTTTGGTAAC
66 ACCCGGTTTTGGTAAC
* * * * *
67718905 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGAGAATTAACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGAGACTTA
*
67718970 GCCCGG
66 ACCCGG
67718976 ATACCATTCG
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
80 33 0.57
81 25 0.43
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (81 bp):
TCGCACAAATGCCTTCGAGAATTAACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGAGACTTA
ACCCGGTTTTGGTAAC
Found at i:67718964 original size:41 final size:40
Alignment explanation
Indices: 67718850--67718975 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 40
67718840 CTAGAATTAG
* * * * *
67718850 CCCGGATTTAGTAACTCGCACGAATGCCTTCGAGACTTAA
1 CCCGGTTTTAGTAACTAGCACAAAAGCCTTCGGGACTTAA
* * *
67718890 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGTTTTAGTAACTAGCACAAAAGCCTTCGGGACTTAA
* *
67718930 CCCGGTTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 CCCGGTTTTAGTAAC-TAGCACAAAAGCCTTCGGGACTTAA
67718971 CCCGG
1 CCCGG
67718976 ATACCATTCG
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
40 49 0.64
41 27 0.36
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CCCGGTTTTAGTAACTAGCACAAAAGCCTTCGGGACTTAA
Found at i:67723887 original size:29 final size:29
Alignment explanation
Indices: 67723850--67723906 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
67723840 TACAAAGTTA
* *
67723850 TAATTAAATAATGCATGATATACAAAAAG
1 TAATAAAATAATGCATGACATACAAAAAG
67723879 TAATAAAATAATGCATGACATACAAAAA
1 TAATAAAATAATGCATGACATACAAAAA
67723907 AGAGTACTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.58, C:0.09, G:0.09, T:0.25
Consensus pattern (29 bp):
TAATAAAATAATGCATGACATACAAAAAG
Found at i:67723998 original size:2 final size:2
Alignment explanation
Indices: 67723993--67724023 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
67723983 GATATATGCA
67723993 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67724024 CATAATGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67724565 original size:13 final size:13
Alignment explanation
Indices: 67724547--67724580 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
67724537 TAAGATATAT
67724547 TAATAATATAAAA
1 TAATAATATAAAA
*
67724560 TAATAATGTAAAA
1 TAATAATATAAAA
67724573 TAATAATA
1 TAATAATA
67724581 ATAATTTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (13 bp):
TAATAATATAAAA
Found at i:67728611 original size:6 final size:6
Alignment explanation
Indices: 67728597--67728632 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
67728587 AACAATAAAT
*
67728597 AAATGA AAATTA AAATTA AAATTA AAATTA AAATTA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
67728633 CTAATAATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (6 bp):
AAATTA
Found at i:67730306 original size:5 final size:5
Alignment explanation
Indices: 67730296--67730339 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
67730286 AGAAATAAGA
67730296 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
67730340 CTTAGAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:67734683 original size:14 final size:14
Alignment explanation
Indices: 67734664--67734690 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67734654 CAGAGCAAAT
67734664 AAAAGAAAAATTAG
1 AAAAGAAAAATTAG
67734678 AAAAGAAAAATTA
1 AAAAGAAAAATTA
67734691 AACTAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (14 bp):
AAAAGAAAAATTAG
Found at i:67737122 original size:24 final size:24
Alignment explanation
Indices: 67737090--67737138 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
67737080 ATTTCATTTG
67737090 AAACTAGACTCATTAAGGAGTCTA
1 AAACTAGACTCATTAAGGAGTCTA
67737114 AAACTAGACTCATTAAGGAGTCTA
1 AAACTAGACTCATTAAGGAGTCTA
67737138 A
1 A
67737139 GGATATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24
Consensus pattern (24 bp):
AAACTAGACTCATTAAGGAGTCTA
Found at i:67737782 original size:39 final size:39
Alignment explanation
Indices: 67737715--67737971 Score: 408
Period size: 39 Copynumber: 6.5 Consensus size: 39
67737705 ACAAAGCATG
* * * *
67737715 CGGGACTTTAAGCCCGAATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
67737755 CGGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
67737795 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
67737834 CGGGACTGAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
67737873 CGGGAATTAGCCCGGATATAACACCACCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
67737912 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
67737951 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
67737972 TTCTTCATTA
Statistics
Matches: 204, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 183 0.90
40 21 0.10
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:67737997 original size:2 final size:2
Alignment explanation
Indices: 67737990--67738025 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
67737980 TATCATGCAC
67737990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67738026 GTATCATAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67741276 original size:18 final size:17
Alignment explanation
Indices: 67741259--67741302 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
67741249 GACTAGTAAT
67741259 TTAATATAAATATATAA
1 TTAATATAAATATATAA
* *
67741276 TTATTATTTAATATATAA
1 TTAATA-TAAATATATAA
67741294 TTAATATAA
1 TTAATATAA
67741303 TTATTTTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATATAAATATATAA
Found at i:67741285 original size:24 final size:27
Alignment explanation
Indices: 67741257--67741311 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
67741247 TGGACTAGTA
67741257 ATTTAATATA-AA-T-ATATAATTATT
1 ATTTAATATATAATTAATATAATTATT
67741281 ATTTAATATATAATTAATATAATTATT
1 ATTTAATATATAATTAATATAATTATT
67741308 -TTTA
1 ATTTA
67741312 TAACATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.36
25 2 0.07
26 5 0.18
27 11 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTTAATATATAATTAATATAATTATT
Found at i:67751885 original size:105 final size:101
Alignment explanation
Indices: 67751707--67751902 Score: 261
Period size: 105 Copynumber: 1.9 Consensus size: 101
67751697 AATTGACAGA
* *
67751707 TAAGACCATGGTTGGACCATGGCAATATTTAAATGTAAAACCATAGCTGGGCTATGGCAATTCAG
1 TAAGACCATGGTTGGACCATGGCAATATTTAAATGTAAAACCATAGCTGGGATATGGCAATTCAA
*
67751772 TGAAAAGACCATAATTGGGTTATGGCACCGTGAACG
66 TGAAAAGACCATAAATGGGTTATGGCACCGTGAACG
*** *
67751808 TAAGACCATGGTTGGACCATGGCAGTATATATATGTGTGTAAGACCATAGCTGGGATATGGC-AT
1 TAAGACCATGGTTGGACCATGGCA--ATAT-T-TAAATGTAAAACCATAGCTGGGATATGGCAAT
67751872 TCTAAT-AGAAAGACCATAAATGGGTTATGGC
62 TC-AATGA-AAAGACCATAAATGGGTTATGGC
67751903 GCTATGAGAT
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
101 24 0.29
103 4 0.05
104 6 0.07
105 48 0.59
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATATTTAAATGTAAAACCATAGCTGGGATATGGCAATTCAA
TGAAAAGACCATAAATGGGTTATGGCACCGTGAACG
Found at i:67758862 original size:53 final size:53
Alignment explanation
Indices: 67758712--67759001 Score: 248
Period size: 61 Copynumber: 5.2 Consensus size: 53
67758702 TACAAAAATC
67758712 CAGTATTTAAAAGAAAAATTTTGGTGCTGGCCTGTCAATGGCTAGCACCAGACT
1 CAGTATTTAAAA-AAAAATTTTGGTGCTGGCCTGTCAATGGCTAGCACCAGACT
* *
67758766 TAGTATTTAAAAAAAAAATCTTTTTTTTTTGTGCTGGCCTGTCAATGGCTAGCACCAGACT
1 CAGTATTT-AAAAAAAAA-------TTTTGGTGCTGGCCTGTCAATGGCTAGCACCAGACT
* * **
67758827 CAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATTG-TCGGCATTAGACT
1 CAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCT-AGCACCAGACT
* **
67758880 CAGTATTTTAAAATATATATATTTTTTGGTTTTGGCCTGTCAATGG-TCAGCACCAGACT
1 CAGTA-TTTAAAA-A-A-A-A-ATTTTGGTGCTGGCCTGTCAATGGCT-AGCACCAGACT
* * * *
67758939 ACCAGCATTTAAAAAAAAA--TT-GTGTTGGCCTGTCAATGGCGAGCACCAAACT
1 --CAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCTAGCACCAGACT
*
67758991 CAATATTTAAA
1 CAGTATTTAAA
67759002 TTTTTCTTTT
Statistics
Matches: 196, Mismatches: 22, Indels: 40
0.76 0.09 0.16
Matches are distributed among these distances:
50 9 0.05
52 28 0.14
53 36 0.18
54 19 0.10
55 5 0.03
56 2 0.01
57 2 0.01
58 2 0.01
59 31 0.16
60 16 0.08
61 46 0.23
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (53 bp):
CAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATGGCTAGCACCAGACT
Found at i:67758949 original size:114 final size:115
Alignment explanation
Indices: 67758710--67759001 Score: 325
Period size: 114 Copynumber: 2.6 Consensus size: 115
67758700 TATACAAAAA
*
67758710 TCCAGTATTTAAAAGAAAAATTTTGGTGCTGGCCTGTCAA-TGGCTAGCACCAGACTTAGTATTT
1 TCCAGTATTTAAAA-AAAAATTTTGGTGCTGGCCTGTCAATTGGCTAGCACCAGACTCAGTATTT
* **
67758774 AAAAAAAAAATCTTTTTTTTTTGTGCTGGCCTGTCAATGGCTAGCACCAGAC
65 AAAAAAAAAATATTTTTTGGTTGT-CTGGCCTGTCAATGGCTAGCACCAGAC
* * **
67758826 T-CAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATTGTC-GGCATTAGACTCAGTATTTT
1 TCCAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATTGGCTAGCACCAGACTCAGTA-TTT
* * *
67758889 AAAATATATATATTTTTTGGTT-T-TGGCCTGTCAATGG-TCAGCACCAGAC
65 AAAAAAAAAATATTTTTTGGTTGTCTGGCCTGTCAATGGCT-AGCACCAGAC
* * * * *
67758938 TACCAGCATTTAAAAAAAAA--TT-GTGTTGGCCTGTCAA-TGGCGAGCACCAAACTCAATATTT
1 T-CCAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATTGGCTAGCACCAGACTCAGTATTT
67758999 AAA
65 AAA
67759002 TTTTTCTTTT
Statistics
Matches: 151, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
110 9 0.06
111 26 0.17
112 27 0.18
114 54 0.36
115 34 0.23
116 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (115 bp):
TCCAGTATTTAAAAAAAAATTTTGGTGCTGGCCTGTCAATTGGCTAGCACCAGACTCAGTATTTA
AAAAAAAAATATTTTTTGGTTGTCTGGCCTGTCAATGGCTAGCACCAGAC
Found at i:67759966 original size:2 final size:2
Alignment explanation
Indices: 67759959--67759994 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
67759949 TTGTTTGATG
67759959 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67759995 GTATTCGGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67761518 original size:47 final size:47
Alignment explanation
Indices: 67761464--67761753 Score: 286
Period size: 47 Copynumber: 6.1 Consensus size: 47
67761454 TTAGGATTTT
** * *
67761464 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
67761511 ATGTGATGGATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
67761558 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
67761605 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
67761652 ATGTGA-GATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
67761700 ATGTGA-AATATGTATGAGATATGCATATATG-G-TAAAGCCGAATGGTCA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
67761748 ATGTGA
1 ATGTGA
67761754 AATATATATA
Statistics
Matches: 216, Mismatches: 21, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
46 2 0.01
47 133 0.62
48 67 0.31
49 4 0.02
50 10 0.05
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Done.