Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 24 of 427
Found at i:6413074 original size:14 final size:15
Alignment explanation
Indices: 6413055--6413083 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6413045 ATAAAGCCAA
6413055 TTCACT-TTACTTCC
1 TTCACTATTACTTCC
6413069 TTCACTATTACTTCC
1 TTCACTATTACTTCC
6413084 ATTATTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.48
Consensus pattern (15 bp):
TTCACTATTACTTCC
Found at i:6421890 original size:72 final size:72
Alignment explanation
Indices: 6421773--6421981 Score: 303
Period size: 72 Copynumber: 2.9 Consensus size: 72
6421763 CCAGATACTT
**
6421773 CAAAGATGATAACTCCCCTATAGACAATGGAA-AAGTACCATTTAATTGATTTTCTGAAACATCA
1 CAAAGATGATAACTCCCCTATAGACAATGGAATTTG-ACCATTTAATTGATTTTCTGAAACATCA
*
6421837 AATAACTC
65 AACAACTC
* *
6421845 CAAAGATGATAACTCCCCTATCGACAATGGAATTTGACCATTTAATTGATTTTCTGAAATATCAA
1 CAAAGATGATAACTCCCCTATAGACAATGGAATTTGACCATTTAATTGATTTTCTGAAACATCAA
6421910 ACAACTC
66 ACAACTC
* * * * * *
6421917 CAAAGATGATAACTGCCCTATAGACAAGGGAATTTGGCCGTTTAGTTGATTTTCTGAAAGATCAA
1 CAAAGATGATAACTCCCCTATAGACAATGGAATTTGACCATTTAATTGATTTTCTGAAACATCAA
6421982 GGTAAGTAAC
Statistics
Matches: 124, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
72 123 0.99
73 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (72 bp):
CAAAGATGATAACTCCCCTATAGACAATGGAATTTGACCATTTAATTGATTTTCTGAAACATCAA
ACAACTC
Found at i:6439093 original size:26 final size:26
Alignment explanation
Indices: 6439057--6439218 Score: 288
Period size: 26 Copynumber: 6.2 Consensus size: 26
6439047 CATGATATTC
6439057 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6439083 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
6439109 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6439135 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6439161 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
6439187 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
6439213 TTATCA
1 TTATCA
6439219 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 130 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:6439992 original size:16 final size:16
Alignment explanation
Indices: 6439967--6439997 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6439957 AACAATCTAC
*
6439967 CTCTTCTCTCCTTAAT
1 CTCTTATCTCCTTAAT
6439983 CTCTTATCTCCTTAA
1 CTCTTATCTCCTTAA
6439998 CTCCTTTACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.35, G:0.00, T:0.48
Consensus pattern (16 bp):
CTCTTATCTCCTTAAT
Found at i:6440533 original size:6 final size:6
Alignment explanation
Indices: 6440522--6440552 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
6440512 ATTTTATCTT
6440522 TCTATA TCTATA TCTATA TCTATA TCTATA T
1 TCTATA TCTATA TCTATA TCTATA TCTATA T
6440553 ATAATTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
TCTATA
Found at i:6441426 original size:20 final size:20
Alignment explanation
Indices: 6441401--6441442 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
6441391 ATAAAACCGT
6441401 GTTGTCAGAGTTAAGGACAC
1 GTTGTCAGAGTTAAGGACAC
6441421 GTTGTCAGAGTTAAGGACAC
1 GTTGTCAGAGTTAAGGACAC
6441441 GT
1 GT
6441443 GATTAAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (20 bp):
GTTGTCAGAGTTAAGGACAC
Found at i:6442603 original size:34 final size:34
Alignment explanation
Indices: 6442562--6442651 Score: 153
Period size: 34 Copynumber: 2.6 Consensus size: 34
6442552 TTACTTTTAA
*
6442562 AAAATCAAATTAAAGTCAAGGTCAACACATTATT
1 AAAATCAAATTAAAGTCAAGGTCAACACATTAGT
*
6442596 AAAATCAAATTAAAGTCAAGGACAACACATTAGT
1 AAAATCAAATTAAAGTCAAGGTCAACACATTAGT
*
6442630 AAAATCAAACTAAAGTCAAGGT
1 AAAATCAAATTAAAGTCAAGGT
6442652 GTGTGGCAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.22
Consensus pattern (34 bp):
AAAATCAAATTAAAGTCAAGGTCAACACATTAGT
Found at i:6445020 original size:20 final size:21
Alignment explanation
Indices: 6444955--6445020 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 21
6444945 ATAAACATAA
6444955 AAAATTAAAAATATAATAATATT
1 AAAATTAAAAATATAAT-A-ATT
*
6444978 AACAACTTAAAAATGATATTAATT
1 AA-AA-TTAAAAAT-ATAATAATT
6445002 AAAA-TAAAAATATAATAAT
1 AAAATTAAAAATATAATAAT
6445021 ATTCTCTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
20 7 0.18
21 7 0.18
23 4 0.11
24 7 0.18
25 9 0.24
26 4 0.11
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.32
Consensus pattern (21 bp):
AAAATTAAAAATATAATAATT
Found at i:6448315 original size:2 final size:2
Alignment explanation
Indices: 6448310--6448347 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6448300 ATATATGAAG
6448310 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6448348 GTATGTGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6448893 original size:23 final size:22
Alignment explanation
Indices: 6448820--6448896 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 22
6448810 TAGTAATAGT
*
6448820 ATATACATAATATAGTTATTAAAA
1 ATATATATAATATAG-TATT-AAA
* *
6448844 ATATATACGTAAGATAATA-TAAA
1 ATATATA--TAATATAGTATTAAA
6448867 ATATATATAATATAGTATTAAA
1 ATATATATAATATAGTATTAAA
6448889 GATATATA
1 -ATATATA
6448897 CATAACATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
21 8 0.18
22 4 0.09
23 17 0.39
24 7 0.16
25 2 0.05
26 6 0.14
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (22 bp):
ATATATATAATATAGTATTAAA
Found at i:6448914 original size:46 final size:47
Alignment explanation
Indices: 6448820--6448917 Score: 130
Period size: 46 Copynumber: 2.1 Consensus size: 47
6448810 TAGTAATAGT
* * *
6448820 ATATACATAATATAGTTATTAAAAATATATACGTAAGATAATATAAA
1 ATATACATAATATAGTTATTAAAAATATATACATAACATAATAAAAA
* *
6448867 ATATATATAATATAG-TATTAAAGATATATACATAACAT-ATAAAAA
1 ATATACATAATATAGTTATTAAAAATATATACATAACATAATAAAAA
6448912 A-ATACA
1 ATATACA
6448918 ATATTAAAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
44 4 0.09
45 7 0.16
46 20 0.44
47 14 0.31
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (47 bp):
ATATACATAATATAGTTATTAAAAATATATACATAACATAATAAAAA
Found at i:6449744 original size:13 final size:13
Alignment explanation
Indices: 6449726--6449759 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
6449716 TCCTTTTATT
6449726 TATTTATTTAATA
1 TATTTATTTAATA
*
6449739 TATTTATCTAATA
1 TATTTATTTAATA
*
6449752 TATATATT
1 TATTTATT
6449760 GTTTTTAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (13 bp):
TATTTATTTAATA
Found at i:6450570 original size:42 final size:42
Alignment explanation
Indices: 6450518--6450611 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
6450508 GAGATAAGAC
*
6450518 TTGTGACTTCAATCTTCTCCGCTAAAACTTCAAGGAGATCTG
1 TTGTGGCTTCAATCTTCTCCGCTAAAACTTCAAGGAGATCTG
* *
6450560 TTGTGGCTTCAATTTTCTCCGCTAAAACTTTAAGGAGATCTG
1 TTGTGGCTTCAATCTTCTCCGCTAAAACTTCAAGGAGATCTG
*
6450602 CTGTGGCTTC
1 TTGTGGCTTC
6450612 TAGTCGTTCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (42 bp):
TTGTGGCTTCAATCTTCTCCGCTAAAACTTCAAGGAGATCTG
Found at i:6450803 original size:87 final size:87
Alignment explanation
Indices: 6450657--6450817 Score: 250
Period size: 87 Copynumber: 1.9 Consensus size: 87
6450647 TGTAATTTCT
* * * * *
6450657 AGCCTGTTACCCTATTGCTTAGAGGTTTAAGGCCCATCGTCTTTGATCTGTTTCCCTACTGCTTA
1 AGCCTATTACCCTACTGCTTAGAGGTTTAAGGCCCACCGTCATCGATCTGTTTCCCTACTGCTTA
6450722 GAGGGTTAAGATCTATAAATTC
66 GAGGGTTAAGATCTATAAATTC
* *
6450744 AGCCTATTACCCTACTGTTTAGGGGTTTAAGGCCCACCGTCATCGATCTGTTTCCCTACTGCTTA
1 AGCCTATTACCCTACTGCTTAGAGGTTTAAGGCCCACCGTCATCGATCTGTTTCCCTACTGCTTA
*
6450809 GGGGGTTAA
66 GAGGGTTAA
6450818 CCTGTTACCC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (87 bp):
AGCCTATTACCCTACTGCTTAGAGGTTTAAGGCCCACCGTCATCGATCTGTTTCCCTACTGCTTA
GAGGGTTAAGATCTATAAATTC
Found at i:6450831 original size:28 final size:29
Alignment explanation
Indices: 6450791--6450846 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
6450781 CGTCATCGAT
*
6450791 CTGTTTCCCTACTGC-TTAGGGGGTTAAC
1 CTGTTACCCTACTGCTTTAGGGGGTTAAC
*
6450819 CTGTTACCCTACTGCTTTAGGGGTTTAA
1 CTGTTACCCTACTGCTTTAGGGGGTTAA
6450847 GGCCCATCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (29 bp):
CTGTTACCCTACTGCTTTAGGGGGTTAAC
Found at i:6450868 original size:73 final size:72
Alignment explanation
Indices: 6450750--6450890 Score: 228
Period size: 73 Copynumber: 1.9 Consensus size: 72
6450740 ATTCAGCCTA
* *
6450750 TTACCCTACTGTTTAGGGGTTTAAGGCCCACCGTCATCGATCTGTTTCCCTACTGCTTAGGGGGT
1 TTACCCTACTGTTTAGGGGTTTAAGGCCCACCGCCATCGATCTGTTTCCCTACTACTTAGGGGGT
6450815 TAACCTG
66 TAACCTG
* * *
6450822 TTACCCTACTGCTTTAGGGGTTTAAGGCCCATCGCCTTTGATCTGTTTCCCTACTACTTAGGGGG
1 TTACCCTACTG-TTTAGGGGTTTAAGGCCCACCGCCATCGATCTGTTTCCCTACTACTTAGGGGG
6450887 TTAA
65 TTAA
6450891 GATCTGTAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 11 0.17
73 52 0.83
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.35
Consensus pattern (72 bp):
TTACCCTACTGTTTAGGGGTTTAAGGCCCACCGCCATCGATCTGTTTCCCTACTACTTAGGGGGT
TAACCTG
Found at i:6450925 original size:43 final size:43
Alignment explanation
Indices: 6450864--6451194 Score: 198
Period size: 43 Copynumber: 7.7 Consensus size: 43
6450854 CGCCTTTGAT
* *
6450864 CTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* ** *
6450907 CTGTTACCCTACTGCTTA-GGGTTTAAAGCCCATC-G--CCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTT-AAG---ATCTGTAAATTCAG-C
* *
6450950 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTCA-C
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* ** *** *
6450992 CTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCAT-TGCCTTC-GAT
1 C-TGTTACCCTACTGCTTAGGGGGTTAA-GATC-TGTAAATTCAG-C
* * * * *
6451037 CTGTTTCCTTACTGCTTAAGAGGTTAAGATTTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * ** **
6451080 CTATTACCCTACTGCTTAGGGGTTTAAGGCCCATC-G-CCA-TCAAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-G---ATCTGTAAATTCAGC
* *
6451124 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* *
6451167 CTGTTACCCTACTGCCTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
6451195 GCCCTTCGTC
Statistics
Matches: 210, Mismatches: 54, Indels: 48
0.67 0.17 0.15
Matches are distributed among these distances:
40 6 0.03
42 9 0.04
43 124 0.59
44 61 0.29
45 4 0.02
46 4 0.02
47 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.34
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:6451063 original size:87 final size:87
Alignment explanation
Indices: 6450818--6451283 Score: 659
Period size: 87 Copynumber: 5.4 Consensus size: 87
6450808 AGGGGGTTAA
* *
6450818 CCTGTTACCCTACTGCTTTAGGGGTTTAAGGCCCATCGCCTTTGATCTGTTTCCCTACTACTTAG
1 CCTGTTACCCTACTGC-TTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAG
*
6450883 GGGGTTAAGATCTGTAAATTCAG
65 GGGGTTAAGATCTATAAATTCAG
*
6450906 CCTGTTACCCTACTGCTTA-GGGTTTAAAGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
6450970 GGGTTAAGATCTATAAATTCA-
66 GGGTTAAGATCTATAAATTCAG
* * *
6450991 CCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGCCTTCGATCTGTTTCCTTACTGCTTAA
1 CC-TGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAG
* * *
6451056 GAGGTTAAGATTTGTAAATTCAG
65 GGGGTTAAGATCTATAAATTCAG
* * *
6451079 CCTATTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCATCAATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
6451144 GGGTTAAGATCTATAAATTCAG
66 GGGTTAAGATCTATAAATTCAG
* * * * * *
6451166 CCTGTTACCCTACTGCCTAGGGGTTTAAGGCCCTTCGTCTTCGATTTG-CTCCACTATTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCC-CTACTGCTTAG
* ** *
6451230 GGAGACAAGATCTATAAATTTAG
65 GGGGTTAAGATCTATAAATTCAG
* *
6451253 CATGTTACCCTACTGCTTAGGGTTTTAAGGC
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGC
6451284 TAGTGAATTC
Statistics
Matches: 338, Mismatches: 36, Indels: 9
0.88 0.09 0.02
Matches are distributed among these distances:
85 2 0.01
86 82 0.24
87 236 0.70
88 18 0.05
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (87 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTATAAATTCAG
Found at i:6469972 original size:60 final size:60
Alignment explanation
Indices: 6469879--6469998 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
6469869 TTTCTTAAAA
6469879 CATATAATTTTTATACGTTAAAAAATAATAGTAAATCCCCTGTTAATTCTAGTAATAGAT
1 CATATAATTTTTATACGTTAAAAAATAATAGTAAATCCCCTGTTAATTCTAGTAATAGAT
6469939 CATATAATTTTTATACGTTAAAAAATAATAGTAAATCCCCTGTTAATTCTAGTAATAGAT
1 CATATAATTTTTATACGTTAAAAAATAATAGTAAATCCCCTGTTAATTCTAGTAATAGAT
6469999 GAAAGACCAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (60 bp):
CATATAATTTTTATACGTTAAAAAATAATAGTAAATCCCCTGTTAATTCTAGTAATAGAT
Found at i:6470303 original size:188 final size:188
Alignment explanation
Indices: 6469980--6470343 Score: 665
Period size: 188 Copynumber: 1.9 Consensus size: 188
6469970 TAAATCCCCT
*
6469980 GTTAATTCTAGTAATAGATGAAAGACCACGTTATTGACCCAAATTTTCAATTATGATTTCCTTCT
1 GTTAATTCTAGTAATAGATGAAAGACCACGTTATTGACCCAAATTTTAAATTATGATTTCCTTCT
*
6470045 CTATGACATCATTCACTGTAATTTTCAATTCTTTTTCTTAGTTTCCCAAATTTCCTATTTATTGC
66 CTATGACATCATTCACTGTAATTTTCAATTCTTTTTCTCAGTTTCCCAAATTTCCTATTTATTGC
*
6470110 CTCTTGACAGTCAATGATGACAAATTATTTTATGTTCAGTTTTCTCCATAAAGCAGGG
131 CTCTTGACAGTCAATGACGACAAATTATTTTATGTTCAGTTTTCTCCATAAAGCAGGG
*
6470168 GTTAATTCTAGTAATAGATGAAAGACCACGTTATTGAGCCAAATTTTAAATTATGATTTCCTTCT
1 GTTAATTCTAGTAATAGATGAAAGACCACGTTATTGACCCAAATTTTAAATTATGATTTCCTTCT
* *
6470233 TTATGACATCATTCACTGTAATTTTCAATTCTTTTTCTCAGTTTCCCAAATTTCCTATTTATTTC
66 CTATGACATCATTCACTGTAATTTTCAATTCTTTTTCTCAGTTTCCCAAATTTCCTATTTATTGC
*
6470298 CTCTTGACAGTCACTGACGACAAATTATTTTATGTTCAGTTTTCTC
131 CTCTTGACAGTCAATGACGACAAATTATTTTATGTTCAGTTTTCTC
6470344 AATGAAGTTT
Statistics
Matches: 169, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
188 169 1.00
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.43
Consensus pattern (188 bp):
GTTAATTCTAGTAATAGATGAAAGACCACGTTATTGACCCAAATTTTAAATTATGATTTCCTTCT
CTATGACATCATTCACTGTAATTTTCAATTCTTTTTCTCAGTTTCCCAAATTTCCTATTTATTGC
CTCTTGACAGTCAATGACGACAAATTATTTTATGTTCAGTTTTCTCCATAAAGCAGGG
Found at i:6475212 original size:17 final size:17
Alignment explanation
Indices: 6475190--6475223 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6475180 TAAACCATAG
6475190 TAATAAAAATAATATAA
1 TAATAAAAATAATATAA
*
6475207 TAATAATAATAATATAA
1 TAATAAAAATAATATAA
6475224 GAAGTGGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAATAAAAATAATATAA
Found at i:6475755 original size:25 final size:23
Alignment explanation
Indices: 6475727--6475782 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
6475717 TTTGTATCAG
6475727 GGGGAGAGAAAAAAAAAGGAGAGAA
1 GGGGAGAGAAAAAAAAA-GAGAG-A
** *
6475752 GGGGAGAGGGAAGAAAAGAGAGA
1 GGGGAGAGAAAAAAAAAGAGAGA
6475775 GGGGAGAG
1 GGGGAGAG
6475783 GAGGGAGCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 9 0.32
24 5 0.18
25 14 0.50
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (23 bp):
GGGGAGAGAAAAAAAAAGAGAGA
Found at i:6475897 original size:9 final size:8
Alignment explanation
Indices: 6475876--6475905 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
6475866 ATTTGATTTT
6475876 TTTTTATA
1 TTTTTATA
6475884 TTTTTATA
1 TTTTTATA
6475892 TGTTTTATA
1 T-TTTTATA
6475901 TTTTT
1 TTTTT
6475906 GCACTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTATA
Found at i:6477208 original size:130 final size:131
Alignment explanation
Indices: 6476974--6477447 Score: 662
Period size: 132 Copynumber: 3.5 Consensus size: 131
6476964 TGAATTGACT
* *
6476974 CTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTGAAAAAGTAGAAATT
6477039 AAAAGGTTCAACCCACCTCTCGCAATATGAGTTG-TTTTTTTTTTGACAACAGAAATTGAAATTA
66 AAAAGGTTCAACCCACCTCTCGCAATATGAGTTGTTTTTTTTTTTGACAACAGAAATTGAAATTA
6477103 C
131 C
* * *
6477104 GTCAGCGTGTCCTAAGGCTCGACTCACCTCTCGCAACATGAGTTGATTTTGAAAAAGTAGAAATT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTGAAAAAGTAGAAATT
6477169 AAAAGGTTCAACCCACCTCTCGCAATATGAGTTGTTTTTTTTTTTTGACAACAGAAATTGAAATT
66 AAAAGGTTCAACCCACCTCTCGCAATATGAGTTG-TTTTTTTTTTTGACAACAGAAATTGAAATT
6477234 AC
130 AC
*
6477236 CTCAGCGTATCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTGAAAAAGTAGAAATT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTGAAAAAGTAGAAATT
* * *** * *
6477301 AAAAGGTTTAACCCACCTCTCGCAATATGAGTTGGTTCTTGAACAACATAAATTGAAAATAGAAA
66 AAAAGGTTCAACCCACCTCTCGCAATATGAGTT-GTT-TT-------TTTTTTTGACAACAGAAA
*
6477366 TTGAAAATAC
122 TTGAAATTAC
* * * * *
6477376 CTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTCAAAAAGTAGGAAT
1 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGA-TTTTGAAAAAGTAGAAAT
6477441 TGAAAAG
65 T-AAAAG
6477448 ACCTCAGCGT
Statistics
Matches: 308, Mismatches: 23, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
130 94 0.31
132 126 0.41
133 3 0.01
140 63 0.20
141 17 0.06
142 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (131 bp):
CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTGAAAAAGTAGAAATT
AAAAGGTTCAACCCACCTCTCGCAATATGAGTTGTTTTTTTTTTTGACAACAGAAATTGAAATTA
C
Found at i:6477368 original size:13 final size:13
Alignment explanation
Indices: 6477350--6477374 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6477340 TGAACAACAT
6477350 AAATTGAAAATAG
1 AAATTGAAAATAG
6477363 AAATTGAAAATA
1 AAATTGAAAATA
6477375 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:6477485 original size:74 final size:71
Alignment explanation
Indices: 6477356--6477813 Score: 383
Period size: 74 Copynumber: 6.3 Consensus size: 71
6477346 ACATAAATTG
6477356 AAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAATAG-AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
6477421 ATTTTTCA
65 A-TTTTCA
* * * **
6477429 AAAAGTAGGAATTGAAAAGACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGAG-T
1 AAAA-TA-GAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
6477493 -ATTTTCTA
64 GATTTTC-A
* * * * * * * *
6477501 AACATA-AACTAAAAATACCTCAGCGTGCCCCGATGCTCAACTCACCTCTTGCAATATGAGTTGA
1 AAAATAGAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
**
6477565 TTTTGG
66 TTTTCA
* * ** * *
6477571 AACATA-AATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
1 AAAATAGAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
*
6477635 TTTTTGA
66 -TTTTCA
* * * **
6477642 AACAACAGGAATTAAAAACACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTC
1 AA-AATA-GAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG-C
* *
6477707 AAT-TTTTTGA
63 --TGATTTTCA
* * * ** **
6477717 AACATA-AACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGCAATATGAATT
1 AAAATAGAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
*
6477781 GATTTTTGA
64 GA-TTTTCA
6477790 AAACAT-GAATT-AAAGATACCTCAG
1 AAA-ATAGAATTGAAA-ATACCTCAG
6477814 AGTACCCAAA
Statistics
Matches: 314, Mismatches: 52, Indels: 37
0.78 0.13 0.09
Matches are distributed among these distances:
69 47 0.15
70 54 0.17
71 20 0.06
72 23 0.07
73 16 0.05
74 143 0.46
75 10 0.03
77 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (71 bp):
AAAATAGAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
TTTTCA
Found at i:6477617 original size:213 final size:216
Alignment explanation
Indices: 6477363--6477812 Score: 622
Period size: 213 Copynumber: 2.1 Consensus size: 216
6477353 TTGAAAATAG
*
6477363 AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTC
1 AAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTC
* * * *
6477428 AAA-AAGTAGGAATTGAAAAGACCTCAGCGTGCCCCGAGGCTTGACTCACCTCTCGCAATATGAG
66 AAACAA-CAGGAATTAAAAACACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAG
* * *
6477492 T-ATTTTCT-AAACATAAACTAAAAATACCTCAGC-GTGCCCCGATGCTCAACTCACCTCTTGCA
130 TAATTTTCTGAAACATAAACTAAAAATACCTCAGCGGTGACCCGAGGCTCAACTCACCTCTCGCA
*
6477554 ATATGAGTTGATTTTGGAACAT
195 ATATGAATTGATTTTGGAACAT
* * * * *
6477576 AAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
1 AAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTC
*
6477641 AAACAACAGGAATTAAAAACACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGT
66 AAACAACAGGAATTAAAAACACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGT
* * **
6477706 CAATTTTTTGAAACATAAACTAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCATTTCTCGC
131 -AATTTTCTGAAACATAAACTAAAAATACCTCAGCG-GTGACCCGAGGCTCAACTCACCTCTCGC
*
6477771 AATATGAATTGATTTTTGAAAACAT
194 AATATGAATTGA-TTTTG-GAACAT
*
6477796 GAATT-AAAGATACCTCA
1 AAATTGAAA-ATACCTCA
6477813 GAGTACCCAA
Statistics
Matches: 206, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
213 116 0.56
214 2 0.01
215 6 0.03
216 25 0.12
218 33 0.16
219 8 0.04
220 16 0.08
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (216 bp):
AAATTGAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTC
AAACAACAGGAATTAAAAACACCTCAGCGTGACCCGAGGCTTGACTCACCTCTCGCAATATGAGT
AATTTTCTGAAACATAAACTAAAAATACCTCAGCGGTGACCCGAGGCTCAACTCACCTCTCGCAA
TATGAATTGATTTTGGAACAT
Found at i:6491811 original size:24 final size:24
Alignment explanation
Indices: 6491784--6491834 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
6491774 TTGGGCCTCT
*
6491784 GTTGGGTTAGTTTAGGTGGGT-TGG
1 GTTGGGTTAGGTTA-GTGGGTATGG
*
6491808 GTTGGTTTAGGTTAGTGGGTATGG
1 GTTGGGTTAGGTTAGTGGGTATGG
6491832 GTT
1 GTT
6491835 TAGCATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.10, C:0.00, G:0.47, T:0.43
Consensus pattern (24 bp):
GTTGGGTTAGGTTAGTGGGTATGG
Found at i:6491977 original size:21 final size:22
Alignment explanation
Indices: 6491932--6491984 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
6491922 ATATATAGTA
6491932 TTATT-TTCATACCTCATTATAT
1 TTATTATT-ATACCTCATTATAT
*
6491954 TTATTATTATACCT-ATTATTT
1 TTATTATTATACCTCATTATAT
*
6491975 TTACTATTAT
1 TTATTATTAT
6491985 CACTTATCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 15 0.54
22 11 0.39
23 2 0.07
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.58
Consensus pattern (22 bp):
TTATTATTATACCTCATTATAT
Found at i:6492405 original size:21 final size:20
Alignment explanation
Indices: 6492381--6492457 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 20
6492371 ACTATTATTT
6492381 TATTTATTTTTATTCTTAGTA
1 TATTTATTTTTATT-TTAGTA
* * *
6492402 TATTTGTTATTAATATTAGTA
1 TATTTATT-TTTATTTTAGTA
*
6492423 TATTTA-TTTTATTATACGTA
1 TATTTATTTTTATTTTA-GTA
6492443 TATATATATTTTTAT
1 TAT-T-TATTTTTAT
6492458 AAATAGTATT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
19 6 0.14
20 7 0.16
21 19 0.43
22 6 0.14
23 6 0.14
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (20 bp):
TATTTATTTTTATTTTAGTA
Found at i:6492505 original size:12 final size:12
Alignment explanation
Indices: 6492482--6492512 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
6492472 TTATATATCC
6492482 TTATATTTATTA
1 TTATATTTATTA
6492494 TTATATTTATTA
1 TTATATTTATTA
*
6492506 TTTTATT
1 TTATATT
6492513 CTAATATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TTATATTTATTA
Found at i:6492519 original size:20 final size:21
Alignment explanation
Indices: 6492482--6492520 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
6492472 TTATATATCC
*
6492482 TTATATTTATTATTATATTTA
1 TTATATTTATTATAATATTTA
*
6492503 TTAT-TTTATTCTAATATT
1 TTATATTTATTATAATATT
6492521 ACTATGTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (21 bp):
TTATATTTATTATAATATTTA
Found at i:6492718 original size:2 final size:2
Alignment explanation
Indices: 6492711--6492745 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6492701 ACATACTTTA
6492711 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6492746 GCACTATTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6495359 original size:37 final size:37
Alignment explanation
Indices: 6495318--6495428 Score: 197
Period size: 37 Copynumber: 3.0 Consensus size: 37
6495308 TGATAATCTT
6495318 GCACTTGGATTGCAAGAAAAACTGTAAATAATAAACA
1 GCACTTGGATTGCAAGAAAAACTGTAAATAATAAACA
6495355 GCACTTGGATTGCAAGAAAAACTGTAAATAATAAACA
1 GCACTTGGATTGCAAGAAAAACTGTAAATAATAAACA
*
6495392 GCACTTGGATTGCAA-AATAAACTGTAAATAAAAAACA
1 GCACTTGGATTGCAAGAA-AAACTGTAAATAATAAACA
6495429 CTACACAAAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
36 2 0.03
37 70 0.97
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.22
Consensus pattern (37 bp):
GCACTTGGATTGCAAGAAAAACTGTAAATAATAAACA
Found at i:6496152 original size:24 final size:24
Alignment explanation
Indices: 6496107--6496154 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
6496097 AAAACCGATC
*
6496107 TTTTTTGTTAAAATTTTAATTCAT
1 TTTTTTGTTAAAATATTAATTCAT
*
6496131 TTTTATTGTTAAAA-ATTGATTCAT
1 TTTT-TTGTTAAAATATTAATTCAT
6496155 GTATGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.58
Consensus pattern (24 bp):
TTTTTTGTTAAAATATTAATTCAT
Found at i:6500154 original size:19 final size:19
Alignment explanation
Indices: 6500132--6500191 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
6500122 AAAATTTATT
6500132 AAATTTTAATAAAAATATA
1 AAATTTTAATAAAAATATA
*
6500151 AAA-TTTATTAAAAAT-TA
1 AAATTTTAATAAAAATATA
* *
6500168 GAATTTTTTATAAAAATAGTA
1 -AAATTTTAATAAAAATA-TA
6500189 AAA
1 AAA
6500192 AATAAAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
17 2 0.06
18 13 0.41
19 13 0.41
20 2 0.06
21 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
AAATTTTAATAAAAATATA
Found at i:6500227 original size:36 final size:36
Alignment explanation
Indices: 6500160--6500229 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 36
6500150 AAAATTTATT
* *
6500160 AAAAATTAGAATTTTTTATAAAAATAGTAAAAAATA
1 AAAAATTAGAATATTTTATAAAAACAGTAAAAAATA
6500196 AAAAATT-GTAATATTTTATAAAAAGCA-TAAAAAA
1 AAAAATTAG-AATATTTTATAAAAA-CAGTAAAAAA
6500230 ATTATAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 1 0.03
36 28 0.93
37 1 0.03
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.31
Consensus pattern (36 bp):
AAAAATTAGAATATTTTATAAAAACAGTAAAAAATA
Found at i:6500234 original size:20 final size:21
Alignment explanation
Indices: 6500211--6500249 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
6500201 TTGTAATATT
6500211 TTATAAAAAGCAT-AAAAAAA
1 TTATAAAAAGCATCAAAAAAA
*
6500231 TTATAAAATGCATCAAAAA
1 TTATAAAAAGCATCAAAAA
6500250 GTCCCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.64, C:0.08, G:0.05, T:0.23
Consensus pattern (21 bp):
TTATAAAAAGCATCAAAAAAA
Found at i:6500532 original size:9 final size:8
Alignment explanation
Indices: 6500508--6500595 Score: 50
Period size: 9 Copynumber: 9.8 Consensus size: 8
6500498 TTATATAAAT
*
6500508 TTTTTGTA
1 TTTTTATA
*
6500516 TTTCTATA
1 TTTTTATA
6500524 TGTTTTATA
1 T-TTTTATA
*
6500533 CCTTTTATGA
1 -TTTTTAT-A
6500543 TTTTTATAA
1 TTTTTAT-A
*
6500552 TTTTTTTCTAA
1 --TTTTTAT-A
6500563 TTTTTAATAA
1 TTTTT-AT-A
6500573 TTTTTTATA
1 -TTTTTATA
6500582 TTTTTATA
1 TTTTTATA
6500590 TTTTTA
1 TTTTTA
6500596 CTAAAATTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
8 21 0.32
9 25 0.38
10 6 0.09
11 13 0.20
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (8 bp):
TTTTTATA
Found at i:6500565 original size:20 final size:19
Alignment explanation
Indices: 6500535--6500594 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
6500525 GTTTTATACC
6500535 TTTTATGATTTTTATAATTT
1 TTTTAT-ATTTTTATAATTT
*
6500555 TTTTCTAATTTTTAATAA-TT
1 TTTTAT-ATTTTT-ATAATTT
6500575 TTTTATATTTTTAT-ATTT
1 TTTTATATTTTTATAATTT
6500593 TT
1 TT
6500595 ACTAAAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
17 1 0.03
18 6 0.17
19 6 0.17
20 18 0.51
21 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
TTTTATATTTTTATAATTT
Found at i:6500566 original size:10 final size:10
Alignment explanation
Indices: 6500543--6500664 Score: 57
Period size: 10 Copynumber: 12.9 Consensus size: 10
6500533 CCTTTTATGA
6500543 TTTTTATAATT
1 TTTTTATAA-T
*
6500554 TTTTTCTAAT
1 TTTTTATAAT
*
6500564 TTTTAATAAT
1 TTTTTATAAT
6500574 TTTTTAT-A-
1 TTTTTATAAT
6500582 TTTTTAT-A-
1 TTTTTATAAT
*
6500590 TTTTTACTAAA
1 TTTTTA-TAAT
* *
6500601 ATTTAATAA-
1 TTTTTATAAT
6500610 TTTTTATAA-
1 TTTTTATAAT
*
6500619 CTTTTAT--T
1 TTTTTATAAT
*
6500627 TATTT-TAAT
1 TTTTTATAAT
*
6500636 TGTTTAT-AT
1 TTTTTATAAT
*
6500645 TTATTTCTAAT
1 TT-TTTATAAT
*
6500656 TTTTAATAA
1 TTTTTATAA
6500665 AATATGGGGC
Statistics
Matches: 86, Mismatches: 16, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
7 1 0.01
8 17 0.20
9 23 0.27
10 29 0.34
11 16 0.19
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:6500606 original size:37 final size:40
Alignment explanation
Indices: 6500535--6500614 Score: 112
Period size: 37 Copynumber: 2.1 Consensus size: 40
6500525 GTTTTATACC
* **
6500535 TTTTATGATTTTTATAATTTTTTTCTAATTTTTAATAATT
1 TTTTATGATTTTTATAATTTTTTACTAAAATTTAATAATT
6500575 TTTTAT-ATTTTTAT-A-TTTTTACTAAAATTTAATAATT
1 TTTTATGATTTTTATAATTTTTTACTAAAATTTAATAATT
6500612 TTT
1 TTT
6500615 ATAACTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 22 0.59
38 1 0.03
39 8 0.22
40 6 0.16
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (40 bp):
TTTTATGATTTTTATAATTTTTTACTAAAATTTAATAATT
Found at i:6500624 original size:19 final size:18
Alignment explanation
Indices: 6500535--6500624 Score: 58
Period size: 19 Copynumber: 4.7 Consensus size: 18
6500525 GTTTTATACC
* *
6500535 TTTTATGATTTTTATAATTT
1 TTTTATAATTTTAATAA--T
*
6500555 TTTTCTAATTTTTAATAAT
1 TTTTATAA-TTTTAATAAT
*
6500574 TTTT-TATATTTTTAT-AT
1 TTTTATA-ATTTTAATAAT
*
6500591 TTTTACTAAAATTTAATAAT
1 TTTTA-T-AATTTTAATAAT
6500611 TTTTATAACTTTTA
1 TTTTATAA-TTTTA
6500625 TTTATTTTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
17 6 0.11
18 10 0.18
19 18 0.32
20 14 0.25
21 8 0.14
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTTATAATTTTAATAAT
Found at i:6500645 original size:19 final size:19
Alignment explanation
Indices: 6500623--6500660 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
6500613 TTATAACTTT
6500623 TATTTATTT-TAATTGTTTA
1 TATTTATTTCTAATT-TTTA
6500642 TATTTATTTCTAATTTTTA
1 TATTTATTTCTAATTTTTA
6500661 ATAAAATATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (19 bp):
TATTTATTTCTAATTTTTA
Found at i:6501185 original size:16 final size:13
Alignment explanation
Indices: 6501151--6501178 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6501141 CTCTCAACTC
6501151 ATTAGGTAAGATG
1 ATTAGGTAAGATG
6501164 ATTAGGTAAGATG
1 ATTAGGTAAGATG
6501177 AT
1 AT
6501179 GCTTAGGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (13 bp):
ATTAGGTAAGATG
Found at i:6502809 original size:5 final size:5
Alignment explanation
Indices: 6502799--6502849 Score: 57
Period size: 5 Copynumber: 9.6 Consensus size: 5
6502789 AACCTAAATT
* *
6502799 AATAA AATAA AATAA AATAAA AATAAA TAATAA AACAA AACAA AATAA
1 AATAA AATAA AATAA AAT-AA AAT-AA -AATAA AATAA AATAA AATAA
6502847 AAT
1 AAT
6502850 CTTCCTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 29 0.69
6 10 0.24
7 3 0.07
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:6502829 original size:28 final size:29
Alignment explanation
Indices: 6502793--6502848 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
6502783 TAGTTTAACC
* *
6502793 TAAATTAATAAAATAAAATAAAATAAAAA
1 TAAATTAATAAAACAAAACAAAATAAAAA
6502822 TAAA-TAATAAAACAAAACAAAATAAAA
1 TAAATTAATAAAACAAAACAAAATAAAA
6502849 TCTTCCTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.20
Consensus pattern (29 bp):
TAAATTAATAAAACAAAACAAAATAAAAA
Found at i:6502849 original size:23 final size:23
Alignment explanation
Indices: 6502804--6502847 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
6502794 AAATTAATAA
* *
6502804 AATAAAATAAAATAAAAATAAAT
1 AATAAAACAAAACAAAAATAAAT
6502827 AATAAAACAAAAC-AAAATAAA
1 AATAAAACAAAACAAAAATAAA
6502848 ATCTTCCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.16
Consensus pattern (23 bp):
AATAAAACAAAACAAAAATAAAT
Found at i:6503343 original size:23 final size:23
Alignment explanation
Indices: 6503316--6503359 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
6503306 TTTTTTTCAA
6503316 ATTTATAATTTTATTATATATTT
1 ATTTATAATTTTATTATATATTT
6503339 ATTTATAATTTTATTATATAT
1 ATTTATAATTTTATTATATAT
6503360 CTTAACGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTATAATTTTATTATATATTT
Found at i:6503344 original size:12 final size:11
Alignment explanation
Indices: 6503318--6503356 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
6503308 TTTTTCAAAT
6503318 TTATAATTTTA
1 TTATAATTTTA
6503329 TTAT-ATATTTA
1 TTATAAT-TTTA
6503340 TTTATAATTTTA
1 -TTATAATTTTA
6503352 TTATA
1 TTATA
6503357 TATCTTAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 8 0.32
13 2 0.08
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATAATTTTA
Found at i:6506477 original size:40 final size:40
Alignment explanation
Indices: 6506433--6506513 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 40
6506423 AACAACTCTG
6506433 TTGGGGTTTTTAA-CTTCTCTCATATTTCAT-TGGGCAAAAC
1 TTGGGG-TTTTAATCTTCTCTCATATTTCATCT-GGCAAAAC
6506473 TTGGGGTTTTAACTTCTTCTCTCATATTTCATCTGGCAAAA
1 TTGGGGTTTTAA--TCTTCTCTCATATTTCATCTGGCAAAA
6506514 ATACCATATG
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
39 6 0.16
40 6 0.16
42 24 0.65
43 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (40 bp):
TTGGGGTTTTAATCTTCTCTCATATTTCATCTGGCAAAAC
Found at i:6514231 original size:21 final size:19
Alignment explanation
Indices: 6514207--6514245 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
6514197 ATTTGCCTCC
6514207 CTATCTAAGACCATGTTTCCT
1 CTATCTAAG-CCAT-TTTCCT
6514228 CTATCTAAGCCATTTTCC
1 CTATCTAAGCCATTTTCC
6514246 GGAGGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 4 0.22
21 9 0.50
ACGTcount: A:0.23, C:0.31, G:0.08, T:0.38
Consensus pattern (19 bp):
CTATCTAAGCCATTTTCCT
Found at i:6521204 original size:31 final size:31
Alignment explanation
Indices: 6521169--6521231 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
6521159 TGTTTTGTCT
*
6521169 CCTGTAATATAGTAAAAATCTCATTTTGACC
1 CCTGTAATATAGTAAAAATCTCATTATGACC
6521200 CCTGTAATATAGTAAAAATCTCATTATGACC
1 CCTGTAATATAGTAAAAATCTCATTATGACC
6521231 C
1 C
6521232 TTTTCCTCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.33
Consensus pattern (31 bp):
CCTGTAATATAGTAAAAATCTCATTATGACC
Found at i:6526082 original size:17 final size:17
Alignment explanation
Indices: 6526062--6526097 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
6526052 GGCAATAAAA
6526062 GTATAAGGGCTTAATTG
1 GTATAAGGGCTTAATTG
6526079 GTATAAGGGCTTAATTG
1 GTATAAGGGCTTAATTG
6526096 GT
1 GT
6526098 CCTTGGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.31, T:0.36
Consensus pattern (17 bp):
GTATAAGGGCTTAATTG
Found at i:6531208 original size:40 final size:39
Alignment explanation
Indices: 6531134--6531210 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 39
6531124 ACATGAAACA
*
6531134 TGAGTCTAAATAAGTTTTGTATAATAAAGTAGTATCTATG
1 TGAGTCTAAATAAGTCTTGTATAATAAAG-AGTATCTATG
6531174 TGAGTCTAAATAAGTCTTGTATGATATAAA-AGTATCT
1 TGAGTCTAAATAAGTCTTGTAT-A-ATAAAGAGTATCT
6531211 CATGAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
40 28 0.82
41 1 0.03
42 5 0.15
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (39 bp):
TGAGTCTAAATAAGTCTTGTATAATAAAGAGTATCTATG
Found at i:6538830 original size:18 final size:17
Alignment explanation
Indices: 6538800--6538847 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
6538790 GGGATTGTGA
*
6538800 TGGTTTTGCTTTGGTTT
1 TGGTTTTGCTTTGGCTT
6538817 TGGTTTTGGCTTTGGCTT
1 TGGTTTT-GCTTTGGCTT
*
6538835 TGCATTTTGCTTT
1 TG-GTTTTGCTTT
6538848 AAAGTTTGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 16 0.59
19 4 0.15
ACGTcount: A:0.02, C:0.10, G:0.27, T:0.60
Consensus pattern (17 bp):
TGGTTTTGCTTTGGCTT
Found at i:6539769 original size:13 final size:12
Alignment explanation
Indices: 6539733--6539801 Score: 50
Period size: 13 Copynumber: 5.3 Consensus size: 12
6539723 GTAGGTATAA
6539733 ATATATTTTAATT
1 ATAT-TTTTAATT
*
6539746 AT-TAATTTAATT
1 ATAT-TTTTAATT
*
6539758 ATATTTTGTAATA
1 ATATTTT-TAATT
6539771 ATTATTTTTAATT
1 A-TATTTTTAATT
*
6539784 ATAATTCTTTAAAT
1 AT-ATT-TTTAATT
6539798 ATAT
1 ATAT
6539802 ATAATTTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
12 14 0.30
13 18 0.39
14 14 0.30
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (12 bp):
ATATTTTTAATT
Found at i:6539769 original size:25 final size:26
Alignment explanation
Indices: 6539733--6539786 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
6539723 GTAGGTATAA
*
6539733 ATATATTTTAATTATTA-ATTTAATT
1 ATATATTTTAATAATTATATTTAATT
*
6539758 ATAT-TTTGTAATAATTATTTTTAATT
1 ATATATTT-TAATAATTATATTTAATT
6539784 ATA
1 ATA
6539787 ATTCTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.12
25 12 0.48
26 10 0.40
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (26 bp):
ATATATTTTAATAATTATATTTAATT
Found at i:6550511 original size:22 final size:22
Alignment explanation
Indices: 6550461--6550515 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
6550451 ATAATTTTAA
* *
6550461 ATTAAAAAAAGTATCAATTATT
1 ATTAAAAAAAGTATCAATAATC
* *
6550483 ATAAAAAAAATTATCAATAATC
1 ATTAAAAAAAGTATCAATAATC
*
6550505 CTTAAAAAAAG
1 ATTAAAAAAAG
6550516 CATTCTCTAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.60, C:0.07, G:0.04, T:0.29
Consensus pattern (22 bp):
ATTAAAAAAAGTATCAATAATC
Found at i:6552493 original size:25 final size:25
Alignment explanation
Indices: 6552464--6552511 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
6552454 AAGTCACTTC
*
6552464 TATATTTTTATTTCTCA-TATTATCT
1 TATATTTATATTTC-CATTATTATCT
6552489 TATATTTATATTTCCATTATTAT
1 TATATTTATATTTCCATTATTAT
6552512 ACCATATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.62
Consensus pattern (25 bp):
TATATTTATATTTCCATTATTATCT
Found at i:6561817 original size:58 final size:58
Alignment explanation
Indices: 6561754--6561918 Score: 173
Period size: 58 Copynumber: 2.9 Consensus size: 58
6561744 TTTTTATAGT
* *
6561754 ATTATATATTATGATTTT-TT-AATTCATA-TAATAATAATTATATTAAAAATTTTATTAA
1 ATTATATATTAT-ATTTTATTAAATT-ATATTAATAATAATTATATT-AAAATATGATTAA
* *
6561812 ATTATATA--ATATTTTATTAAATTATATTTAGTAATAATTATGTTAAAATATGATTAA
1 ATTATATATTATATTTTATTAAATTATA-TTAATAATAATTATATTAAAATATGATTAA
* *
6561869 ATTATTTATTAT-TTTTATTAAATTATTTTTAATAATAATCT-TATTAAAAT
1 ATTATATATTATATTTTATTAAATTA-TATTAATAATAAT-TATATTAAAAT
6561919 TTAATAATAA
Statistics
Matches: 91, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
55 5 0.05
56 7 0.08
57 22 0.24
58 53 0.58
59 4 0.04
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (58 bp):
ATTATATATTATATTTTATTAAATTATATTAATAATAATTATATTAAAATATGATTAA
Found at i:6562104 original size:16 final size:16
Alignment explanation
Indices: 6562083--6562150 Score: 73
Period size: 16 Copynumber: 4.2 Consensus size: 16
6562073 TGAATTACTG
*
6562083 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTCC
*
6562099 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
* *
6562115 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCC
* **
6562131 ATTATAATTCTATTCC
1 ATTACAGCTCTATTCC
6562147 ATTA
1 ATTA
6562151 TAGTGAACCA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:6562120 original size:32 final size:32
Alignment explanation
Indices: 6562083--6562150 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
6562073 TGAATTACTG
* *
6562083 ATTACAGCTCTATTTC-ATTACAGTTCTATTCC
1 ATTACAACTCTA-TTCAATTACAATTCTATTCC
*
6562115 ATTACAACTCTATTCAATTATAATTCTATTCC
1 ATTACAACTCTATTCAATTACAATTCTATTCC
6562147 ATTA
1 ATTA
6562151 TAGTGAACCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 3 0.09
32 29 0.91
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (32 bp):
ATTACAACTCTATTCAATTACAATTCTATTCC
Found at i:6562152 original size:16 final size:16
Alignment explanation
Indices: 6562091--6562150 Score: 75
Period size: 16 Copynumber: 3.8 Consensus size: 16
6562081 TGATTACAGC
* *
6562091 TCTATTTCATTACAGT
1 TCTATTCCATTACAAT
*
6562107 TCTATTCCATTACAAC
1 TCTATTCCATTACAAT
* *
6562123 TCTATTCAATTATAAT
1 TCTATTCCATTACAAT
6562139 TCTATTCCATTA
1 TCTATTCCATTA
6562151 TAGTGAACCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.30, C:0.22, G:0.02, T:0.47
Consensus pattern (16 bp):
TCTATTCCATTACAAT
Found at i:6562308 original size:18 final size:18
Alignment explanation
Indices: 6562287--6562322 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6562277 TATTAACTAA
*
6562287 TTTATATTTAAATATTTT
1 TTTATATTTAAAAATTTT
*
6562305 TTTATTTTTAAAAATTTT
1 TTTATATTTAAAAATTTT
6562323 GTAATGTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTATATTTAAAAATTTT
Found at i:6564313 original size:20 final size:21
Alignment explanation
Indices: 6564285--6564324 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
6564275 TACATTTTTT
*
6564285 TAAAGTTTATAT-ATATAAAC
1 TAAAATTTATATGATATAAAC
*
6564305 TAAAATTTATGTGATATAAA
1 TAAAATTTATATGATATAAA
6564325 TTTAATATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (21 bp):
TAAAATTTATATGATATAAAC
Found at i:6577839 original size:26 final size:26
Alignment explanation
Indices: 6577780--6577840 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
6577770 TTGGCAATAC
6577780 TTTTGAAAAGTACTTTTGAGAAGTGT
1 TTTTGAAAAGTACTTTTGAGAAGTGT
* * *
6577806 TGTGGAAAAGTGCTTTTGAGAAGTGT
1 TTTTGAAAAGTACTTTTGAGAAGTGT
6577832 TTTTGAAAA
1 TTTTGAAAA
6577841 ATTTGGTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.26, T:0.39
Consensus pattern (26 bp):
TTTTGAAAAGTACTTTTGAGAAGTGT
Found at i:6578864 original size:22 final size:22
Alignment explanation
Indices: 6578837--6578882 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
6578827 GAAAGAAATA
*
6578837 ATATAT-GTGTGTGTATATATAT
1 ATATATAGTGTGTG-AGATATAT
6578859 ATATATCAGTGTGTGAGATATAT
1 ATATAT-AGTGTGTGAGATATAT
6578882 A
1 A
6578883 ACATGTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 8 0.38
24 7 0.33
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (22 bp):
ATATATAGTGTGTGAGATATAT
Found at i:6579031 original size:45 final size:45
Alignment explanation
Indices: 6578982--6579070 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
6578972 ATTTTCTCTT
6578982 TTTATCTCCATTTAGAGCCTCTTTGTACCTATATATATATATATC
1 TTTATCTCCATTTAGAGCCTCTTTGTACCTATATATATATATATC
*
6579027 TTTATCTTCATTTAGAGCCTCTTTGTACCTATATATATATATAT
1 TTTATCTCCATTTAGAGCCTCTTTGTACCTATATATATATATAT
6579071 AGGTAAAGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.27, C:0.18, G:0.07, T:0.48
Consensus pattern (45 bp):
TTTATCTCCATTTAGAGCCTCTTTGTACCTATATATATATATATC
Found at i:6579530 original size:26 final size:24
Alignment explanation
Indices: 6579490--6579549 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
6579480 TTATTTCATT
* * *
6579490 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
6579514 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
6579540 AAATAAATAT
1 AAATAAATAT
6579550 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:6579561 original size:22 final size:20
Alignment explanation
Indices: 6579520--6579566 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
6579510 ATAATAAATC
* *
6579520 AAATATATTTAAAAACATAA
1 AAATAAATTTAAAAAAATAA
6579540 AAATAAATATTAAAACAAATAA
1 AAATAAAT-TTAAAA-AAATAA
6579562 AAATA
1 AAATA
6579567 TACTAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.30
21 6 0.26
22 10 0.43
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAAATTTAAAAAAATAA
Found at i:6579573 original size:20 final size:21
Alignment explanation
Indices: 6579536--6579577 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
6579526 ATTTAAAAAC
*
6579536 ATAAAAATAAATATTAAAACAA
1 ATAAAAAT-AATACTAAAACAA
6579558 ATAAAAAT-ATACTAAAACAA
1 ATAAAAATAATACTAAAACAA
6579578 TTCTTAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
22 8 0.42
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (21 bp):
ATAAAAATAATACTAAAACAA
Found at i:6583909 original size:6 final size:6
Alignment explanation
Indices: 6583900--6583933 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
6583890 GATAAAATTA
6583900 AAAAAC -AAAA- AAAAAC AAAAAC AAAAAC AAAAAC
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC
6583934 TTTTTTTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 8 0.31
6 18 0.69
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:6583919 original size:16 final size:17
Alignment explanation
Indices: 6583900--6583931 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6583890 GATAAAATTA
6583900 AAAAACAAAAA-AAAAC
1 AAAAACAAAAACAAAAC
6583916 AAAAACAAAAACAAAA
1 AAAAACAAAAACAAAA
6583932 ACTTTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAACAAAAC
Found at i:6585701 original size:171 final size:172
Alignment explanation
Indices: 6585493--6585837 Score: 658
Period size: 171 Copynumber: 2.0 Consensus size: 172
6585483 CAAACTTCAT
6585493 CTTCTTTGCCATGAACACATCAGTTTCACCTTCTTCGCCATTGATGGCGACCTTAGAAGAAAATG
1 CTTCTTTGCCATGAACACATCAGTTTCACCTTCTTCGCCATTGATGGCGACCTTAGAAGAAAATG
6585558 GAAACGTCCCTTTATTTCAGACAAAAATGAAAACCCAAAAAAATTCCAATAACTTCCATGTCAGT
66 GAAACGTCCCTTTATTTCAG-CAAAAATGAAAACCCAAAAAAATTCCAATAACTTCCATGTCAGT
6585623 GAAGAAATCC-AAA-TCAGGTAAAGGGCCCTTTATTTTTTAGG
130 GAAGAAATCCAAAACTCAGGTAAAGGGCCCTTTATTTTTTAGG
6585664 CTTCTTTGCCATGAACACATCAGTTTCACCTTCTTCGCCATTGATGGCGACCTTAGAAGAAAATG
1 CTTCTTTGCCATGAACACATCAGTTTCACCTTCTTCGCCATTGATGGCGACCTTAGAAGAAAATG
6585729 GAAACGTCCCTTTATTTCAGCAAAAATGAAAACCCAAAAAAATTCCAATAACTTCCATGTCAGTG
66 GAAACGTCCCTTTATTTCAGCAAAAATGAAAACCCAAAAAAATTCCAATAACTTCCATGTCAGTG
*
6585794 ACGAAATCCAAAACTCAGGTAAAGGGCCCTTTATTTTTTAGG
131 AAGAAATCCAAAACTCAGGTAAAGGGCCCTTTATTTTTTAGG
6585836 CT
1 CT
6585838 CTTAAAAGAC
Statistics
Matches: 171, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
170 53 0.31
171 88 0.51
172 30 0.18
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (172 bp):
CTTCTTTGCCATGAACACATCAGTTTCACCTTCTTCGCCATTGATGGCGACCTTAGAAGAAAATG
GAAACGTCCCTTTATTTCAGCAAAAATGAAAACCCAAAAAAATTCCAATAACTTCCATGTCAGTG
AAGAAATCCAAAACTCAGGTAAAGGGCCCTTTATTTTTTAGG
Found at i:6586595 original size:22 final size:21
Alignment explanation
Indices: 6586554--6586600 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
6586544 AGAAACAAAG
** *
6586554 TTAAAAAAATATTTTTAATTT
1 TTAAAAAAATATTTAAAATTA
6586575 TTAAAATAAATATTTAAAATTA
1 TTAAAA-AAATATTTAAAATTA
6586597 TTAA
1 TTAA
6586601 TTCCCACGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAAAAAAATATTTAAAATTA
Found at i:6587035 original size:20 final size:20
Alignment explanation
Indices: 6587010--6587050 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
6587000 ATATTATATA
6587010 ATTTAAAATATACAA-ATTTT
1 ATTT-AAATATACAATATTTT
*
6587030 ATTTAATTATACAATATTTT
1 ATTTAAATATACAATATTTT
6587050 A
1 A
6587051 AATATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTAAATATACAATATTTT
Found at i:6588357 original size:3 final size:3
Alignment explanation
Indices: 6588349--6588613 Score: 55
Period size: 3 Copynumber: 87.3 Consensus size: 3
6588339 TATTTATACT
* * * **
6588349 TTA TTA TTA CTTA TTA TT- TTA TTA TCA TTA -TA TCA CTA TTA TCG
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * *
6588393 TTA TTA CTA TTT TTT TTA -TA CTA TTG CTG CTA TTA TTA TTA TTCC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
* * *
6588438 TGA TT- TTA TTA TTA TTAA TGTA TTCT TTA TT- TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TT-A T-TA TT-A TTA TTA TTA TTA TTA TTA TTA
** * * * *
6588484 TT- TCTA TTA TTA TTA TGG CTA TTA TTT TTA TGA TTA -TA TT- TTC
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ***
6588527 TTT TTGA GT- TTA TCTA CTTA TTA TT- TTA TTA TTAA TTAA CTTA GCG
1 TTA TT-A TTA TTA T-TA -TTA TTA TTA TTA TTA TT-A TT-A -TTA TTA
* * * *
6588573 TTA TTTA TTA TTA TTG TTA TTT TTA TCA TTA TTA CTA TTA T
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
6588614 CTTTTTAAAT
Statistics
Matches: 185, Mismatches: 55, Indels: 44
0.65 0.19 0.15
Matches are distributed among these distances:
2 18 0.10
3 138 0.75
4 25 0.14
5 4 0.02
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:6588469 original size:26 final size:24
Alignment explanation
Indices: 6588423--6588499 Score: 84
Period size: 24 Copynumber: 3.1 Consensus size: 24
6588413 CTATTGCTGC
6588423 TATTATTATTATTCCTGATTTTAT
1 TATTATTATTATTCCTGATTTTAT
* *
6588447 TATTATTAATGTATTCTTTATTTTAT
1 TATTATT-AT-TATTCCTGATTTTAT
* *
6588473 TATTACTATTATTTCT-ATTATTAT
1 TATTATTATTATTCCTGATT-TTAT
6588497 TAT
1 TAT
6588500 GGCTATTATT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 3 0.07
24 19 0.42
25 4 0.09
26 19 0.42
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (24 bp):
TATTATTATTATTCCTGATTTTAT
Found at i:6590196 original size:17 final size:17
Alignment explanation
Indices: 6590174--6590207 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6590164 TATCATATTT
6590174 TTATAATTGTATTGGTA
1 TTATAATTGTATTGGTA
6590191 TTATAATTGTATTGGTA
1 TTATAATTGTATTGGTA
6590208 AATGCTATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (17 bp):
TTATAATTGTATTGGTA
Found at i:6590527 original size:20 final size:20
Alignment explanation
Indices: 6590482--6590530 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
6590472 AATACAGTTG
*
6590482 GCATTGACACATCGTTGACTA
1 GCATTGAC-CATCATTGACTA
* *
6590503 -TATTGACCATTATTGACTA
1 GCATTGACCATCATTGACTA
6590522 GCATTGACC
1 GCATTGACC
6590531 GTTTAATTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (20 bp):
GCATTGACCATCATTGACTA
Found at i:6591163 original size:20 final size:21
Alignment explanation
Indices: 6591138--6591187 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
6591128 TATTTAACTT
*
6591138 TTTAAAAAAAATAAA-ATTAA
1 TTTAAAAAAAATAAATATCAA
*
6591158 TTT-AAAAATATAAATATCAA
1 TTTAAAAAAAATAAATATCAA
*
6591178 ATTAAAAAAA
1 TTTAAAAAAA
6591188 TATGTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 10 0.42
20 9 0.38
21 5 0.21
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (21 bp):
TTTAAAAAAAATAAATATCAA
Found at i:6592302 original size:21 final size:20
Alignment explanation
Indices: 6592278--6592326 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
6592268 TCAAATACTT
6592278 TTTTATTTTATAAAAATAAAA
1 TTTTATTTT-TAAAAATAAAA
* *
6592299 TTTTATATTTAAAATTAAAA
1 TTTTATTTTTAAAAATAAAA
6592319 TTTCTATT
1 TTT-TATT
6592327 CAGAATTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTATTTTTAAAAATAAAA
Found at i:6599811 original size:21 final size:22
Alignment explanation
Indices: 6599774--6599815 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
6599764 AAAAAAAAAT
6599774 ACTATCCATATTATTATTTTTA
1 ACTATCCATATTATTATTTTTA
*
6599796 ACTATTCATA-TATTATTTTT
1 ACTATCCATATTATTATTTTT
6599816 GTTTTAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.57
Consensus pattern (22 bp):
ACTATCCATATTATTATTTTTA
Found at i:6600626 original size:31 final size:31
Alignment explanation
Indices: 6600583--6600651 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
6600573 ATTTCTTTAA
* * *
6600583 ATGTATATAGTTGAATCACAATCAAAATTTT
1 ATGTATACAGTTGAACCACAATCAAAATTTC
** *
6600614 ATGTATACAGTTGAACCATGATCAAAGTTTC
1 ATGTATACAGTTGAACCACAATCAAAATTTC
6600645 ATGTATA
1 ATGTATA
6600652 TAATTACACC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (31 bp):
ATGTATACAGTTGAACCACAATCAAAATTTC
Found at i:6602440 original size:22 final size:21
Alignment explanation
Indices: 6602415--6602460 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
6602405 AAAAAGTTAT
*
6602415 AAAGTGTTGATTAAATTATTTA
1 AAAGTGTTCA-TAAATTATTTA
*
6602437 AAAGTTTTCATAAATTATTTA
1 AAAGTGTTCATAAATTATTTA
6602458 AAA
1 AAA
6602461 ATTTTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.43
Consensus pattern (21 bp):
AAAGTGTTCATAAATTATTTA
Found at i:6602450 original size:21 final size:21
Alignment explanation
Indices: 6602426--6602465 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
6602416 AAGTGTTGAT
*
6602426 TAAATTATTTAAAAGTTTTCA
1 TAAATTATTTAAAAATTTTCA
6602447 TAAATTATTTAAAAATTTT
1 TAAATTATTTAAAAATTTT
6602466 TATTTAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (21 bp):
TAAATTATTTAAAAATTTTCA
Found at i:6605482 original size:25 final size:26
Alignment explanation
Indices: 6605388--6605496 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
6605378 TGATACAAAT
6605388 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
6605414 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6605440 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
6605466 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
6605491 TGATAA
1 TGATAA
6605497 GAATTCATGT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 24 0.31
26 54 0.69
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:6608988 original size:3 final size:3
Alignment explanation
Indices: 6608824--6608968 Score: 120
Period size: 3 Copynumber: 48.7 Consensus size: 3
6608814 TATAAAAGAC
6608824 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
6608871 ACCT -AT GAT ACT AAT AAT AGT AAT AAT AAG AA- AATT AAT ATT AGT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* * * *
6608916 ATT AAT AAT AAT GGAA- AAT AAT AAT AAC AAT GAT AAT -AT AGT AAT
1 AAT AAT AAT AAT --AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6608961 AAT AAT AA
1 AAT AAT AA
6608969 AAGTGAAATT
Statistics
Matches: 115, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
2 9 0.08
3 101 0.88
4 3 0.03
5 2 0.02
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6609320 original size:2 final size:2
Alignment explanation
Indices: 6609313--6609345 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
6609303 ATATTAAAAG
*
6609313 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6609346 CATAGTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6609384 original size:3 final size:3
Alignment explanation
Indices: 6609371--6609444 Score: 123
Period size: 3 Copynumber: 25.0 Consensus size: 3
6609361 AAATATTTAC
6609371 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
6609418 ATA ATA ATA ATA ATA CTA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
6609445 TTATATAAAC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
2 2 0.03
3 65 0.97
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:6609588 original size:25 final size:24
Alignment explanation
Indices: 6609551--6609606 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
6609541 TAAATATAAT
* * *
6609551 AATATGTGTATAACGTGGTATTAAA
1 AATATGTGCATAACATAGTATT-AA
*
6609576 AATATGTGCATAACATAGTATTTA
1 AATATGTGCATAACATAGTATTAA
6609600 AATATGT
1 AATATGT
6609607 ATACATAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (24 bp):
AATATGTGCATAACATAGTATTAA
Found at i:6609729 original size:3 final size:3
Alignment explanation
Indices: 6609711--6609762 Score: 61
Period size: 3 Copynumber: 17.7 Consensus size: 3
6609701 AAATATACAT
* * * *
6609711 TAA TAT TAA CAA TAA TAA TAA TAA TAA TAG TAA TAC TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6609759 -AA TA
1 TAA TA
6609763 CAAAAACAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6610025 original size:28 final size:28
Alignment explanation
Indices: 6609945--6610031 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
6609935 GGAAAGCAAT
* *
6609945 AATAATAATATAAT-TGATACTAA-AAAG
1 AATAATAATA-AATATGATAATAATAGAG
6609972 AA-AATATATAAATAT-AT-ATAGGATAGAG
1 AATAATA-ATAAATATGATAATA--ATAGAG
*
6610000 AATAATAATAAATATGATAATAATAGAT
1 AATAATAATAAATATGATAATAATAGAG
6610028 AATA
1 AATA
6610032 GCAAAAATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 15
0.73 0.04 0.22
Matches are distributed among these distances:
25 2 0.04
26 9 0.18
27 7 0.14
28 22 0.45
29 6 0.12
30 3 0.06
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.30
Consensus pattern (28 bp):
AATAATAATAAATATGATAATAATAGAG
Found at i:6611363 original size:14 final size:14
Alignment explanation
Indices: 6611344--6611376 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6611334 TTATTAGTTG
6611344 TTAATTTT-TTTACA
1 TTAATTTTATTTA-A
6611358 TTAATTTTATTTAA
1 TTAATTTTATTTAA
6611372 TTAAT
1 TTAAT
6611377 CAATATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
TTAATTTTATTTAA
Found at i:6613764 original size:30 final size:29
Alignment explanation
Indices: 6613691--6613781 Score: 87
Period size: 30 Copynumber: 3.0 Consensus size: 29
6613681 TATTGGTACA
*
6613691 TGAGTTTGGTTTTAATATTTAATTTTG-TCTT
1 TGAGTTT-GTTTTAATA-TTAA-TTTGATATT
*
6613722 TGAAATTT-TTTTAATATTAATTTGATATT
1 TG-AGTTTGTTTTAATATTAATTTGATATT
*
6613751 TGAGTTTAGTTTTAATATTCAATTTAATATT
1 TGAGTTT-GTTTTAATATT-AATTTGATATT
6613782 CAAAACAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
28 8 0.16
29 9 0.18
30 18 0.35
31 12 0.24
32 4 0.08
ACGTcount: A:0.29, C:0.02, G:0.11, T:0.58
Consensus pattern (29 bp):
TGAGTTTGTTTTAATATTAATTTGATATT
Found at i:6614456 original size:30 final size:30
Alignment explanation
Indices: 6614422--6614482 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
6614412 GTTAGCTGGG
6614422 ACCCTAAAATCTTATAATATATAATATAAA
1 ACCCTAAAATCTTATAATATATAATATAAA
6614452 ACCCTAAAATCTTATAATATATAATATAAA
1 ACCCTAAAATCTTATAATATATAATATAAA
6614482 A
1 A
6614483 TATATTATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (30 bp):
ACCCTAAAATCTTATAATATATAATATAAA
Found at i:6617331 original size:15 final size:15
Alignment explanation
Indices: 6617305--6617342 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
6617295 TTATATCATG
*
6617305 TATATCATTTTTAA-
1 TATATTATTTTTAAC
6617319 TATTATTATTTTTAAC
1 TA-TATTATTTTTAAC
6617335 TATATTAT
1 TATATTAT
6617343 GTAAATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 17 0.81
16 2 0.10
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATATTATTTTTAAC
Found at i:6617379 original size:25 final size:25
Alignment explanation
Indices: 6617333--6617381 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
6617323 ATTATTTTTA
* * *
6617333 ACTATATTATGTAAATATTTTTAAC
1 ACTATATCACGTAAATACTTTTAAC
*
6617358 ACTATATCACGTACATACTTTTAA
1 ACTATATCACGTAAATACTTTTAA
6617382 TATCATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.43
Consensus pattern (25 bp):
ACTATATCACGTAAATACTTTTAAC
Found at i:6617509 original size:26 final size:26
Alignment explanation
Indices: 6617478--6617540 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
6617468 TCCTAATATA
* *
6617478 TATATTGTGTATACGT-TTTTAAATAC
1 TATATTATGTATACATATTTT-AATAC
*
6617504 TATATTATATATACATATTTTAATAC
1 TATATTATGTATACATATTTTAATAC
*
6617530 CATATTATGTA
1 TATATTATGTA
6617541 CATACTATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (26 bp):
TATATTATGTATACATATTTTAATAC
Found at i:6617871 original size:20 final size:22
Alignment explanation
Indices: 6617818--6617872 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 22
6617808 ATACTATTTC
6617818 ATGTATATACTTTTAATATTACT
1 ATGTATATA-TTTTAATATTACT
*
6617841 ATGTATTTATTTTAATA-TA-T
1 ATGTATATATTTTAATATTACT
*
6617861 ATGTACATATTT
1 ATGTATATATTT
6617873 ATGTAGTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.38
21 2 0.07
22 8 0.28
23 8 0.28
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
ATGTATATATTTTAATATTACT
Found at i:6619932 original size:6 final size:6
Alignment explanation
Indices: 6619921--6619969 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
6619911 GATAAATGAG
*
6619921 TTTAAT TTTAAT ATTTAA- TTTAAT ATATAAT TTT--T TTTAAT TTTAAT
1 TTTAAT TTTAAT -TTTAAT TTTAAT -TTTAAT TTTAAT TTTAAT TTTAAT
6619968 TT
1 TT
6619970 GATACTTGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
4 4 0.11
5 5 0.14
6 17 0.47
7 10 0.28
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTAAT
Found at i:6623777 original size:30 final size:30
Alignment explanation
Indices: 6623741--6623811 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
6623731 GGTGGGTTTG
*
6623741 ATTTTAAAATAAATAATTTATTGTGGTTCA
1 ATTTTAAAATAAATAATTTATTGTGGCTCA
* *
6623771 ATTTTAAAATAAATAATTTTTTGTGGCTCG
1 ATTTTAAAATAAATAATTTATTGTGGCTCA
*
6623801 ATATTAAAATA
1 ATTTTAAAATA
6623812 TGTTTTGGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (30 bp):
ATTTTAAAATAAATAATTTATTGTGGCTCA
Found at i:6623994 original size:27 final size:28
Alignment explanation
Indices: 6623941--6623995 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
6623931 TAATAAATAT
*
6623941 TGAGTGATTATTTTTGTAATTTTTTATA
1 TGAGTGATTATTTTTATAATTTTTTATA
6623969 TGAGTGATTA-TTTTAT-ATTTTGTTATA
1 TGAGTGATTATTTTTATAATTTT-TTATA
6623996 AAATTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 5 0.20
27 10 0.40
28 10 0.40
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (28 bp):
TGAGTGATTATTTTTATAATTTTTTATA
Found at i:6625585 original size:56 final size:58
Alignment explanation
Indices: 6625468--6625585 Score: 195
Period size: 56 Copynumber: 2.1 Consensus size: 58
6625458 TGAACCACCC
6625468 TTAAAAGAGGATTCTAAAAGTACTCTTGCAAAACACCCTGTTATTATTAATTTTCAAG
1 TTAAAAGAGGATTCTAAAAGTACTCTTGCAAAACACCCTGTTATTATTAATTTTCAAG
* * *
6625526 TTAAAAGAGTATTCTAAATGTAGTCTTGC-AAA-ACCCTGTTATTATTAATTTTCAAG
1 TTAAAAGAGGATTCTAAAAGTACTCTTGCAAAACACCCTGTTATTATTAATTTTCAAG
6625582 TTAA
1 TTAA
6625586 TATTGTGTAG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 28 0.49
57 3 0.05
58 26 0.46
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (58 bp):
TTAAAAGAGGATTCTAAAAGTACTCTTGCAAAACACCCTGTTATTATTAATTTTCAAG
Found at i:6630813 original size:29 final size:30
Alignment explanation
Indices: 6630749--6630824 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
6630739 ACCTGCCAAG
* *
6630749 TCCCTCTATTATATAAACTGGATCACATTAG
1 TCCCTCTACTAT-TAAACTGGATCACATTAA
*
6630780 TCCCTCTACTATTAAA-TGTATCA-ATTTAA
1 TCCCTCTACTATTAAACTGGATCACA-TTAA
*
6630809 TCCCTATACTATTAAA
1 TCCCTCTACTATTAAA
6630825 AAGAATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 24 0.60
30 4 0.10
31 11 0.28
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.38
Consensus pattern (30 bp):
TCCCTCTACTATTAAACTGGATCACATTAA
Found at i:6639495 original size:2 final size:2
Alignment explanation
Indices: 6639488--6639514 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6639478 GTATCAAGTA
6639488 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
6639515 GTCAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6639996 original size:26 final size:27
Alignment explanation
Indices: 6639944--6640001 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
6639934 TATATATTAC
* * *
6639944 TTAAAAAAATAATTTTTGTATAGTTTT
1 TTAAAAAAATAAATTTTGGATAATTTT
*
6639971 TTAAAAATATAAATTTTGGA-AATTTT
1 TTAAAAAAATAAATTTTGGATAATTTT
*
6639997 ATAAA
1 TTAAA
6640002 TATTTTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (27 bp):
TTAAAAAAATAAATTTTGGATAATTTT
Found at i:6640001 original size:18 final size:18
Alignment explanation
Indices: 6639978--6640024 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
6639968 TTTTTAAAAA
6639978 TATAAAT-TTTGGAAATTT
1 TATAAATATTT-GAAATTT
*
6639996 TATAAATATTTTAAATTT
1 TATAAATATTTGAAATTT
*
6640014 TAAAAATATTT
1 TATAAATATTT
6640025 TGAATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 23 0.88
19 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
TATAAATATTTGAAATTT
Found at i:6640025 original size:18 final size:18
Alignment explanation
Indices: 6639990--6640032 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
6639980 TAAATTTTGG
*
6639990 AAATTTTATAAATATTTT
1 AAATTTTAAAAATATTTT
6640008 AAATTTTAAAAATATTTT
1 AAATTTTAAAAATATTTT
*
6640026 GAATTTT
1 AAATTTT
6640033 TTGGTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
AAATTTTAAAAATATTTT
Found at i:6640510 original size:22 final size:23
Alignment explanation
Indices: 6640459--6640511 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
6640449 GATCTACATA
* *
6640459 TAATATAAAATTTATAATTTATT
1 TAATAAAAAATATATAATTTATT
6640482 TATATAAAAAATATATAATTTA-T
1 TA-ATAAAAAATATATAATTTATT
6640505 TAATAAA
1 TAATAAA
6640512 CTAAAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 5 0.19
23 5 0.19
24 17 0.63
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TAATAAAAAATATATAATTTATT
Found at i:6641533 original size:27 final size:27
Alignment explanation
Indices: 6641499--6641557 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
6641489 TTGAAAATAC
6641499 AAATATTTTACATTTGTTATAACTTTTTA
1 AAAT-TTTTA-ATTTGTTATAACTTTTTA
* * *
6641528 AAATTTTTAATTTTTTTTAATTTTTTA
1 AAATTTTTAATTTGTTATAACTTTTTA
6641555 AAA
1 AAA
6641558 AAGATTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 18 0.67
28 5 0.19
29 4 0.15
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (27 bp):
AAATTTTTAATTTGTTATAACTTTTTA
Found at i:6642877 original size:68 final size:66
Alignment explanation
Indices: 6642731--6642878 Score: 167
Period size: 68 Copynumber: 2.2 Consensus size: 66
6642721 TGAAAAGTGT
* * *
6642731 ATACATAATAATACTAAATACATATATACATAATATATATAAAATGAACATATACAATATATTAG
1 ATACATAATAACA-TAAATACATATATACATAATATACATAAAATGAACATATACAATATAATAG
6642796 AA
65 AA
* * * *
6642798 ATAC-TAATAACATAAAATATATATATTA-ATAATACTACATAGATATGTACATATACATTATAA
1 ATACATAATAACAT-AAATACATATA-TACATAATA-TACATA-AAATGAACATATACAATATAA
6642861 TA-AA
62 TAGAA
6642865 ATACATAATAACAT
1 ATACATAATAACAT
6642879 TAAAGTATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
65 1 0.01
66 23 0.33
67 17 0.25
68 28 0.41
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.32
Consensus pattern (66 bp):
ATACATAATAACATAAATACATATATACATAATATACATAAAATGAACATATACAATATAATAGA
A
Found at i:6643040 original size:23 final size:22
Alignment explanation
Indices: 6643008--6643111 Score: 70
Period size: 25 Copynumber: 4.5 Consensus size: 22
6642998 ATACATATAT
6643008 ATATATATATATATTAAAAAAAC
1 ATATA-ATATATATTAAAAAAAC
*
6643031 --ATAATA-ATATTAAAAATAC
1 ATATAATATATATTAAAAAAAC
* * * *
6643050 GTACATAATATATATATATATACAC
1 --ATATAATATATAT-TAAAAAAAC
6643075 ATATAATATAGTTATTAAAAAATAC
1 ATATAATATA--TATTAAAAAA-AC
*
6643100 ATACAATATATA
1 ATATAATATATA
6643112 GTATTAAGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
19 12 0.19
20 3 0.05
21 3 0.05
23 17 0.27
24 8 0.13
25 20 0.32
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAATATATATTAAAAAAAC
Found at i:6643042 original size:19 final size:20
Alignment explanation
Indices: 6643018--6643060 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
6643008 ATATATATAT
6643018 ATATTAAAAAAACATA-ATA
1 ATATTAAAAAAACATACATA
* *
6643037 ATATTAAAAATACGTACATA
1 ATATTAAAAAAACATACATA
6643057 ATAT
1 ATAT
6643061 ATATATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.30
Consensus pattern (20 bp):
ATATTAAAAAAACATACATA
Found at i:6643110 original size:27 final size:24
Alignment explanation
Indices: 6643069--6643151 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 24
6643059 ATATATATAT
6643069 ATACACATATAATATAGTTATTAAAAA
1 ATACACA-AT-ATATAG-TATTAAAAA
*
6643096 ATACATACAATATATAGTATTAAGAAT
1 ATAC--ACAATATATAGTATTAA-AAA
6643123 ATACACAATATATATGGTATTAAAAA
1 ATACACAATATATA--GTATTAAAAA
6643149 ATA
1 ATA
6643152 TAGTATTAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
25 10 0.20
26 11 0.22
27 23 0.47
28 2 0.04
29 3 0.06
ACGTcount: A:0.54, C:0.07, G:0.06, T:0.33
Consensus pattern (24 bp):
ATACACAATATATAGTATTAAAAA
Found at i:6643123 original size:25 final size:25
Alignment explanation
Indices: 6643071--6643148 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 25
6643061 ATATATATAT
6643071 ACACATATAATATAGTTATTAAAAAATAC
1 ACACA-AT-ATATAG-TATT-AAAAATAC
* * *
6643100 ATACAATATATAGTATTAAGAATAT
1 ACACAATATATAGTATTAAAAATAC
6643125 ACACAATATATATGGTATTAAAAA
1 ACACAATATATA--GTATTAAAAA
6643149 ATATAGTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 17 0.40
26 4 0.10
27 15 0.36
28 2 0.05
29 4 0.10
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.32
Consensus pattern (25 bp):
ACACAATATATAGTATTAAAAATAC
Found at i:6643157 original size:15 final size:15
Alignment explanation
Indices: 6643134--6643164 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6643124 TACACAATAT
*
6643134 ATATGGTATTAAAAA
1 ATATAGTATTAAAAA
6643149 ATATAGTATTAAAAA
1 ATATAGTATTAAAAA
6643164 A
1 A
6643165 ACATAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
ATATAGTATTAAAAA
Found at i:6643220 original size:15 final size:15
Alignment explanation
Indices: 6643197--6643257 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
6643187 TTGATTAAAA
* *
6643197 AATAATAATACTAAT
1 AATAGTAATAGTAAT
6643212 AATAGTAATAGTAA-
1 AATAGTAATAGTAAT
*
6643226 AATACTAATA--AAT
1 AATAGTAATAGTAAT
6643239 AATAG-ATATAGTAAT
1 AATAGTA-ATAGTAAT
6643254 AATA
1 AATA
6643258 AGAACGTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.08
13 7 0.18
14 9 0.24
15 19 0.50
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (15 bp):
AATAGTAATAGTAAT
Found at i:6643694 original size:26 final size:26
Alignment explanation
Indices: 6643665--6643774 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
6643655 TGATACAAAT
6643665 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
6643691 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
6643717 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
6643743 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATATTCCA
6643769 TGATAA
1 TGATAA
6643775 GAAATTTATG
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Done.