Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 242 of 427
Found at i:68732175 original size:11 final size:11
Alignment explanation
Indices: 68732139--68732193 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
68732129 TACGGTATGT
68732139 ATGATATGCAC
1 ATGATATGCAC
* *
68732150 ATGAAATG--T
1 ATGATATGCAC
68732159 ATGATATGCAC
1 ATGATATGCAC
*
68732170 ATGATATG--T
1 ATGATATGCAC
68732179 ATGATATGCAC
1 ATGATATGCAC
68732190 ATGA
1 ATGA
68732194 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:68732271 original size:24 final size:24
Alignment explanation
Indices: 68732244--68732361 Score: 168
Period size: 24 Copynumber: 5.0 Consensus size: 24
68732234 GAGGAAGTGA
*
68732244 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
68732268 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
68732291 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
68732315 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
68732339 AAAAGAGGC-TAGGCCTCAGTTAT
1 AAAAG-GGCTTATGCCCCAGTTAT
68732362 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 22 0.26
24 60 0.71
25 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68732313 original size:47 final size:48
Alignment explanation
Indices: 68732244--68732361 Score: 168
Period size: 47 Copynumber: 2.5 Consensus size: 48
68732234 GAGGAAGTGA
68732244 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
68732291 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
68732339 AAAAGAGGC-TAGGCCTCAGTTAT
1 AAAAG-GGCTTATGCCCCAGTTAT
68732362 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 43 0.67
48 18 0.28
49 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:68732587 original size:30 final size:30
Alignment explanation
Indices: 68732553--68732615 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
68732543 CGTTTACAGT
68732553 AAAGGCTTCGGCCCAGTAATATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
*
68732583 AAAGGCTTCGGCCCAGTATTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
68732613 AAA
1 AAA
68732616 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATG
Found at i:68735866 original size:47 final size:47
Alignment explanation
Indices: 68735730--68736108 Score: 526
Period size: 47 Copynumber: 8.0 Consensus size: 47
68735720 GGATTTTATA
** * * * *
68735730 TGATGAATGTGAATGTGTATATATGCGATAAGGCCGAATGG-AAATG
1 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
** *
68735776 TGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAA-C---ATGCATATGTGTGATAAGGCCGAATGGCCAATG
*
68735827 TGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCAATG
1 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
*
68735874 TGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
* *
68735921 TGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGACCAATG
1 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
* *
68735968 TGATGAATGTAAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
* *
68736015 TGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATG
1 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
* * * *
68736062 TGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
68736109 CGAAATGTGT
Statistics
Matches: 304, Mismatches: 24, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
46 13 0.04
47 251 0.83
50 23 0.08
51 17 0.06
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
TGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
Found at i:68735900 original size:25 final size:25
Alignment explanation
Indices: 68735825--68735949 Score: 72
Period size: 25 Copynumber: 5.2 Consensus size: 25
68735815 GAATGGCCAA
*
68735825 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCGTATG
* * *
68735850 TGTGAT-AAGGCTG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
68735872 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
68735897 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
68735919 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
68735944 TGTGAT
1 TGTGAT
68735950 AAGGCCGAAT
Statistics
Matches: 71, Mismatches: 15, Indels: 28
0.62 0.13 0.25
Matches are distributed among these distances:
22 16 0.23
23 16 0.23
24 16 0.23
25 23 0.32
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:68736218 original size:46 final size:46
Alignment explanation
Indices: 68736082--68736218 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
68736072 GAACATGTAT
* *
68736082 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
68736128 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
68736174 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
68736219 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:68737281 original size:26 final size:26
Alignment explanation
Indices: 68737244--68737312 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
68737234 GGGTGTTACA
*
68737244 TACCTAACCCATTATCATGGAATATT
1 TACCTAACCCATTATCATGGAACATT
*
68737270 TACCTAATCCATTATCATGGAACATT
1 TACCTAACCCATTATCATGGAACATT
68737296 TACCTAACCCATTATCA
1 TACCTAACCCATTATCA
68737313 ATTTGTACCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.33
Consensus pattern (26 bp):
TACCTAACCCATTATCATGGAACATT
Found at i:68742131 original size:12 final size:12
Alignment explanation
Indices: 68742116--68742145 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
68742106 GTACTACCTT
68742116 GGCCTCGACCAC
1 GGCCTCGACCAC
68742128 GGCCTCGACCAC
1 GGCCTCGACCAC
68742140 GGCCTC
1 GGCCTC
68742146 TTCCCCGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.50, G:0.27, T:0.10
Consensus pattern (12 bp):
GGCCTCGACCAC
Found at i:68743679 original size:26 final size:26
Alignment explanation
Indices: 68743628--68743680 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
68743618 TCAAACATGC
*
68743628 ATTTAGGTCAATTTAACTCTAGGGGT
1 ATTTAGGTCAATTTAACTCTAAGGGT
* *
68743654 ATTTTGGT-AATTTATCTACTAAGGGT
1 ATTTAGGTCAATTTAACT-CTAAGGGT
68743680 A
1 A
68743681 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCTAAGGGT
Found at i:68746499 original size:46 final size:46
Alignment explanation
Indices: 68746449--68746624 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
68746439 TGGTTGAGCA
*
68746449 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68746495 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68746540 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68746588 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68746625 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68746605 original size:93 final size:93
Alignment explanation
Indices: 68746446--68746617 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
68746436 GGATGGTTGA
*
68746446 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
68746511 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
68746539 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
68746603 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
68746618 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68747962 original size:26 final size:26
Alignment explanation
Indices: 68747933--68748092 Score: 241
Period size: 26 Copynumber: 6.2 Consensus size: 26
68747923 TGAAATGTAC
* *
68747933 ATCATGTAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68747959 ATCATGGAACATTTTCCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
68747985 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
68748011 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
68748037 ATCATGGAATACTTT-CCTAATCCATT
1 ATCATGGAACA-TTTACCTAACCCATT
68748063 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68748089 ATCA
1 ATCA
68748093 ATTTGTACCA
Statistics
Matches: 120, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
25 3 0.03
26 114 0.95
27 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68748011 original size:52 final size:52
Alignment explanation
Indices: 68747933--68748092 Score: 268
Period size: 52 Copynumber: 3.1 Consensus size: 52
68747923 TGAAATGTAC
* * * *
68747933 ATCATGTAACATTTACCTAAACCATTATCATGGAACATTTTCCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
68747985 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
68748037 ATCATGGAATACTTT-CCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATA-TTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
68748089 ATCA
1 ATCA
68748093 ATTTGTACCA
Statistics
Matches: 103, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
52 100 0.97
53 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:68764974 original size:42 final size:42
Alignment explanation
Indices: 68764915--68765066 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 42
68764905 AGATTACGTT
* * *
68764915 TAAGACTATATTTGGGATATGGCATCGATATGAAACTTCATG
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCATG
* ** *
68764957 TAAGACCATATTTGGGATATGGCATCGATATGAGACTTTGTA
1 TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCATG
* * * *
68764999 TAAGACCACACCTGGGCTATTGGCATCGATACGAGA-TTACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATATGAGACTT-CATG
*
68765042 TAAGACCATATCTGGGACATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
68765067 TGGTACGGTA
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 60 0.66
43 31 0.34
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATATGAGACTTCATG
Found at i:68765852 original size:28 final size:28
Alignment explanation
Indices: 68765812--68765877 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
68765802 CCATCACAGA
* *
68765812 AACAGTATCAGGTGGGCCTTAGCCCAAT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
68765840 AACAGAATCAGGTGGGCCTAAGCCCAAT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
*
68765868 -ACAAAATCAG
1 AACAGAATCAG
68765878 TATCAAATGC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 9 0.26
28 26 0.74
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTAAGCCCAAT
Found at i:68768288 original size:22 final size:21
Alignment explanation
Indices: 68768255--68768296 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
68768245 TCAAACCTAC
68768255 ACAAGCATGCAAAATTTACACA
1 ACAAGCATGCAAAA-TTACACA
*
68768277 ACAAGGCA-GCAACATTACAC
1 ACAA-GCATGCAAAATTACAC
68768297 CACTATCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.33
22 9 0.50
23 3 0.17
ACGTcount: A:0.48, C:0.26, G:0.12, T:0.14
Consensus pattern (21 bp):
ACAAGCATGCAAAATTACACA
Found at i:68768960 original size:20 final size:19
Alignment explanation
Indices: 68768937--68768979 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
68768927 CATTTTTCTT
**
68768937 TTTTCTTATTCTCTTTTTGC
1 TTTTCTTACACTCTTTTT-C
*
68768957 TTTTTTTACACTCTTTTTC
1 TTTTCTTACACTCTTTTTC
68768976 TTTT
1 TTTT
68768980 GTTTCTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (19 bp):
TTTTCTTACACTCTTTTTC
Found at i:68768979 original size:6 final size:6
Alignment explanation
Indices: 68768896--68768961 Score: 51
Period size: 6 Copynumber: 10.2 Consensus size: 6
68768886 GATCTCGATC
* * **
68768896 TCTTTT TCCTTC TCTTTT TCTTTT TCAATT TCATTTT TCTTTTT TCTTATT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TC-TTTT TC-TTTT TCTT-TT
68768947 CTCTTTT TGCTTTT T
1 -TCTTTT T-CTTTT T
68768962 TTACACTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
6 23 0.49
7 20 0.43
8 4 0.09
ACGTcount: A:0.06, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TCTTTT
Found at i:68774349 original size:29 final size:28
Alignment explanation
Indices: 68774292--68774358 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
68774282 CCATCACAGA
* *
68774292 AACAGCATCAGGTGGGCCTTAGCCTAAT
1 AACAGAATCAGGTGGGCCTTAGCCCAAT
*
68774320 AACAGAATTAGGTGGGGCC-TATGCCCAAT
1 AACAGAATCAGGT-GGGCCTTA-GCCCAAT
68774349 -ACAGAATCAG
1 AACAGAATCAG
68774359 CATTAGATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 22 0.67
29 11 0.33
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTTAGCCCAAT
Found at i:68775080 original size:17 final size:17
Alignment explanation
Indices: 68775058--68775099 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
68775048 AACCCGTGTA
68775058 GGGTCTACGAGCCCATT
1 GGGTCTACGAGCCCATT
68775075 GGGTCTACGAGCCCATT
1 GGGTCTACGAGCCCATT
*
68775092 GGGCCTAC
1 GGGTCTAC
68775100 ACGACCCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (17 bp):
GGGTCTACGAGCCCATT
Found at i:68777473 original size:46 final size:46
Alignment explanation
Indices: 68777420--68777595 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
68777410 TATTTGGGCA
68777420 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68777466 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68777511 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68777559 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68777596 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68777575 original size:93 final size:93
Alignment explanation
Indices: 68777416--68777588 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
68777406 GGGATATTTG
* *
68777416 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68777481 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
68777509 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
68777574 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
68777589 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68779921 original size:28 final size:28
Alignment explanation
Indices: 68779890--68779955 Score: 98
Period size: 28 Copynumber: 2.4 Consensus size: 28
68779880 CCATCACAGA
* *
68779890 AACAGTATCAGGTGGGCCTTAGCCCAAT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
68779918 AACAGAATCAGGTGGGCCTAAGCCCAAT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
*
68779946 -ACAAAATCAG
1 AACAGAATCAG
68779956 TATCAGATGC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 9 0.26
28 26 0.74
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTAAGCCCAAT
Found at i:68780799 original size:17 final size:18
Alignment explanation
Indices: 68780777--68780810 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68780767 TTACCCAAAC
68780777 GGGCCTACA-GGCCCATT
1 GGGCCTACACGGCCCATT
*
68780794 GGGCCTATACGGCCCAT
1 GGGCCTACACGGCCCAT
68780811 GAGATTGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.18, C:0.35, G:0.29, T:0.18
Consensus pattern (18 bp):
GGGCCTACACGGCCCATT
Found at i:68786687 original size:28 final size:28
Alignment explanation
Indices: 68786626--68786723 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
68786616 TCACAAATTG
** * *
68786626 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
68786655 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
68786683 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
68786711 GCACTAAGTGTGC
1 GCACTAAGTGTGC
68786724 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:68794364 original size:28 final size:28
Alignment explanation
Indices: 68794303--68794400 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
68794293 TCACAAATTG
** * *
68794303 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
68794332 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
68794360 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
68794388 GCACTAAGTGTGC
1 GCACTAAGTGTGC
68794401 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:68801561 original size:42 final size:42
Alignment explanation
Indices: 68801505--68801668 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 42
68801495 TTAGGGTTAT
*
68801505 TGAGA-TTACGTGTAAGACCATATCTGGAATATGACATCGATA
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGACATCGATA
* *
68801547 TGAAACTTCGTGTAAAACCATATCTGGGATATGACATCGATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGACATCGATA
* * * * *
68801589 TGAGACTTCGTATAAGACCATAGCTGGGCTATTGGCATCAATA
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGACATCGATA
* * *
68801632 CGAGA-TTACATGTAAGACCACATCTGGGATATGACAT
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATGACAT
68801669 TGGTACGATA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
42 69 0.68
43 33 0.32
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:68805818 original size:40 final size:41
Alignment explanation
Indices: 68805724--68805944 Score: 255
Period size: 40 Copynumber: 5.6 Consensus size: 41
68805714 TATTCGAATG
*
68805724 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
68805765 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
68805805 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
68805845 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
68805885 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
68805924 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
68805945 ATTACTTGAG
Statistics
Matches: 156, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 16 0.10
40 95 0.61
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:68812723 original size:43 final size:43
Alignment explanation
Indices: 68812657--68812813 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 43
68812647 AGCTCGTACA
*
68812657 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
* * *
68812700 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
* *
68812742 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
*
68812786 ATGCCAATGTCCTAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
68812814 CGAAATTACA
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 27 0.28
43 41 0.42
44 30 0.31
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:68812816 original size:86 final size:85
Alignment explanation
Indices: 68812657--68812819 Score: 240
Period size: 86 Copynumber: 1.9 Consensus size: 85
68812647 AGCTCGTACA
* *
68812657 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
68812722 CTTACACGAAATCAAATATG
66 CTTACACGAAATCAAATATG
* * *
68812742 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAA-GTCGATGCCAATGTCCTAGAC-GT
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATCGATGCCAATGTCCCAGACAG-
68812805 GGTCTTACACGAAAT
63 GGTCTTACACGAAAT
68812820 TACATATCGG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
85 30 0.43
86 38 0.54
87 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATGTCCCAGACAGGGT
CTTACACGAAATCAAATATG
Found at i:68817832 original size:67 final size:67
Alignment explanation
Indices: 68817724--68817877 Score: 254
Period size: 67 Copynumber: 2.3 Consensus size: 67
68817714 ACACGGCATT
* ** * *
68817724 AGACACGCCCGTGTGTATAGACTGTGGCAAAACAGGGCATACATACTGACTTATCCACATGGCCA
1 AGACACGCCCGTGTGTCTAGACCATGGAAAAACAGGGCATACATACTGACTTATCCACATAGCCA
68817789 TA
66 TA
68817791 AGACACGCCCGTGTGTCTAGACCATGGAAAAACAGGGCATACATACTGACTTATCCACATAGCCA
1 AGACACGCCCGTGTGTCTAGACCATGGAAAAACAGGGCATACATACTGACTTATCCACATAGCCA
68817856 TA
66 TA
*
68817858 AGACAAGCCCGTGTGTCTAG
1 AGACACGCCCGTGTGTCTAG
68817878 GCCGTGGTTG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 81 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (67 bp):
AGACACGCCCGTGTGTCTAGACCATGGAAAAACAGGGCATACATACTGACTTATCCACATAGCCA
TA
Found at i:68819037 original size:24 final size:24
Alignment explanation
Indices: 68819008--68819055 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
68818998 ATATAACGAG
68819008 CATATA-TAACATATCGTTCATTTT
1 CATATATTAACATATCG-TCATTTT
*
68819032 CATATATTTCACATATCGTCATTT
1 CATATA-TTAACATATCGTCATTT
68819056 GAATCATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 6 0.29
25 6 0.29
26 9 0.43
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (24 bp):
CATATATTAACATATCGTCATTTT
Found at i:68820972 original size:51 final size:51
Alignment explanation
Indices: 68820897--68821115 Score: 129
Period size: 51 Copynumber: 4.3 Consensus size: 51
68820887 GGCCTTCAAA
* *** * *
68820897 TAGTACCACACTTGTGACTAAAGCTATCTTTTACATATAGTGGCCTGCACT
1 TAGTACCACACATGTGACTAAAGCTATCCAGTACACATAGTAGCCTGCACT
** * **
68820948 TAGTACCACACATGTGGTTGAAGCTATCCAGTATGCATAGTAGCCTGCACT
1 TAGTACCACACATGTGACTAAAGCTATCCAGTACACATAGTAGCCTGCACT
* * * * ** **
68820999 TAGTACTACACATGCGACCT-TA-CCATCTGGTACATGTAGTAGCCTGCACT
1 TAGTACCACACATGTGA-CTAAAGCTATCCAGTACACATAGTAGCCTGCACT
* * * * ** * * *
68821049 TAGTACTACACACGTGACCTAAAACCATTTTA-TACACATTGTAGCCTGTACA
1 TAGTACCACACATGTGA-CTAAAGCTA-TCCAGTACACATAGTAGCCTGCACT
*
68821101 TAGTACTACACATGT
1 TAGTACCACACATGT
68821116 TCTCACAATG
Statistics
Matches: 130, Mismatches: 34, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
50 39 0.30
51 56 0.43
52 33 0.25
53 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (51 bp):
TAGTACCACACATGTGACTAAAGCTATCCAGTACACATAGTAGCCTGCACT
Found at i:68822488 original size:42 final size:42
Alignment explanation
Indices: 68822380--68822536 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
68822370 AGCTCGTACA
** * *
68822380 ATGCCAACGTCCCAGATGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
* *
68822423 ATGCC-ACTGTCCTAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATACG
* *
68822465 GTGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-AA-TACG
68822509 ATGCCAACGTCCCAG--ATGTGTCTTACAC
1 ATGCCAACGTCCCAGACATG-GTCTTACAC
68822537 AAAAACACAT
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
42 31 0.32
43 47 0.49
44 17 0.18
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:68824005 original size:30 final size:31
Alignment explanation
Indices: 68823948--68824005 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
68823938 TTACGAGCCT
**
68823948 AGGGACAAAATCATAATTTTTGTAAAGTCTA
1 AGGGACAAAATCATAATTTTTCCAAAGTCTA
* *
68823979 AGGG-CAAAATGATCATTTTTCCAAAGT
1 AGGGACAAAATCATAATTTTTCCAAAGT
68824006 ATGAATTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (31 bp):
AGGGACAAAATCATAATTTTTCCAAAGTCTA
Found at i:68832200 original size:48 final size:48
Alignment explanation
Indices: 68832080--68832436 Score: 309
Period size: 48 Copynumber: 7.6 Consensus size: 48
68832070 TGATATGTGT
* * * * *
68832080 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCCAC-A-TTA-AGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA-A
* * *
68832126 GCCAGTGTAAGACATGTCTGAGACATGCATTGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * ***
68832174 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAG--ATGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * * *
68832220 GCTAGTATAAGACATGTCTGGGACATGCATCGGCATTGAGAT-GA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* *
68832266 GCTAGTGTAAGACATGTCTGGGAAATGCATCGGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * * * *
68832314 GCCAGTGCAAGACATGTCTAGGACATACATCAGCCTCGAGATATACTA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * ** * *
68832362 GCTAGTGTAAGACCTGTCTGGGACATGTCAAC-GACT-TTGATATGCTA
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCTCGAGATATACAA
*
68832409 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
68832437 GCGTCGGCAT
Statistics
Matches: 254, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
46 111 0.44
47 21 0.08
48 117 0.46
49 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
Found at i:68832232 original size:94 final size:93
Alignment explanation
Indices: 68832080--68832436 Score: 321
Period size: 94 Copynumber: 3.8 Consensus size: 93
68832070 TGATATGTGT
* *
68832080 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCCACATT-AA-GAGAGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-G--GCATTGAATGAGAGCCAGTGTAAGACATGT
*
68832143 CTGAGACATGCATTGGCCTCGAGATATACAA
63 CTGAGACATGCATCGGCCTCGAGATATACAA
* * * *
68832174 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATGGGAGCTAGTATAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-ATGAGAGCCAGTGTAAGACATGTCT
* * * * *
68832239 GGGACATGCATCGGCATTGAGAT-GA-GA
65 GAGACATGCATCGGCCTCGAGATATACAA
* * * * *
68832266 GCTAGTGTAAGACATGTCTGGGAAATGCATCGGCCTCAAGATAT-ACAAGCCAGTGCAAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT--TGA-ATGA-GAGCCAGTGTAAGACATG
* * *
68832330 TCT-AGGACATACATCAGCCTCGAGATATACTA
62 TCTGA-GACATGCATCGGCCTCGAGATATACAA
* * * * **
68832362 GCTAGTGTAAGACCTGTCTGGGACATGTCAACGACTTTGATATGCTAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGGCATTGA-ATGAGAGCCAGTGTAAGA-CATGT
*
68832427 CTGGGACATG
63 CTGAGACATG
68832437 GCGTCGGCAT
Statistics
Matches: 210, Mismatches: 40, Indels: 24
0.77 0.15 0.09
Matches are distributed among these distances:
91 4 0.02
92 35 0.17
93 3 0.01
94 106 0.50
95 18 0.09
96 38 0.18
97 6 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAATGAGAGCCAGTGTAAGACATGTCTG
AGACATGCATCGGCCTCGAGATATACAA
Found at i:68832338 original size:140 final size:140
Alignment explanation
Indices: 68832080--68832432 Score: 397
Period size: 140 Copynumber: 2.5 Consensus size: 140
68832070 TGATATGTGT
*
68832080 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCCACATT-AA-GAGAGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGAATGAGAGCCAGTGTAAGACATGT
* * * * * * * * * *
68832143 CTGAGACATGCATTGGCCTCGAGATATACAAGCTAGTGTAAGACATGTTTGGGACATGCATCGGC
63 CTGGGAAATGCATCGGCCTCAAGATATACAAGCCAGTGCAAGACATGTCTAGGACATACATCAGC
* **
68832208 ATTGAG-ATGGGA
128 ATCGAGAATACGA
* * *
68832220 GCTAGTATAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGA-ATGAGAGCCAGTGTAAGACATGTCT
*
68832285 GGGAAATGCATCGGCCTCAAGATATACAAGCCAGTGCAAGACATGTCTAGGACATACATCAGCCT
65 GGGAAATGCATCGGCCTCAAGATATACAAGCCAGTGCAAGACATGTCTAGGACATACATCAGCAT
*
68832350 CGAGATATACTA
130 CGAGA-ATACGA
* * * **
68832362 GCTAGTGTAAGACCTGTCTGGGACATGTCAACGACTTTGATATGCTAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGACATTGA-ATGAGAGCCAGTGTAAGA-CATGT
68832427 CTGGGA
63 CTGGGA
68832433 CATGGCGTCG
Statistics
Matches: 178, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
137 4 0.02
138 1 0.01
139 2 0.01
140 108 0.61
142 28 0.16
143 24 0.13
144 11 0.06
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (140 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAATGAGAGCCAGTGTAAGACATGTCTG
GGAAATGCATCGGCCTCAAGATATACAAGCCAGTGCAAGACATGTCTAGGACATACATCAGCATC
GAGAATACGA
Found at i:68838969 original size:16 final size:17
Alignment explanation
Indices: 68838948--68838990 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
68838938 GTAATGGAAA
*
68838948 ATAAATATTAG-GTTGG
1 ATAAATATAAGTGTTGG
68838964 ATAAATAATAAGTGTTGG
1 ATAAAT-ATAAGTGTTGG
68838982 ATGAAATAT
1 AT-AAATAT
68838991 CCAAGAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 6 0.26
17 4 0.17
18 9 0.39
19 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (17 bp):
ATAAATATAAGTGTTGG
Found at i:68845535 original size:13 final size:13
Alignment explanation
Indices: 68845511--68845535 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68845501 AGCCCGTGCC
68845511 TATGTCCCGTGTA
1 TATGTCCCGTGTA
68845524 TATGTCCCGTGT
1 TATGTCCCGTGT
68845536 CTTCATACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (13 bp):
TATGTCCCGTGTA
Found at i:68845684 original size:30 final size:30
Alignment explanation
Indices: 68845648--68845716 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
68845638 TGTGGCTAGA
*
68845648 GGCCGTGTCCTCCATACGGCTGAGACACAT
1 GGCCGTGTCCTCCATACGGCTGAGACACAC
68845678 GGCCGTGTCCTCCATACGGCTGAGACACAC
1 GGCCGTGTCCTCCATACGGCTGAGACACAC
*
68845708 GGTCGTGTC
1 GGCCGTGTC
68845717 TCTGCCCGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.20
Consensus pattern (30 bp):
GGCCGTGTCCTCCATACGGCTGAGACACAC
Found at i:68850997 original size:46 final size:46
Alignment explanation
Indices: 68850930--68851107 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
68850920 TGTAACCCGC
*
68850930 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGTGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-TGTTCGTAT
* * *
68850976 CCATAAGTGAAGTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGTAT
* *** * ** *
68851022 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGTAT
* *
68851069 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
68851108 CCCAAATATC
Statistics
Matches: 106, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 69 0.65
47 37 0.35
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGTAT
Found at i:68851049 original size:93 final size:93
Alignment explanation
Indices: 68850937--68851109 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
68850927 CGCCCATAAG
** * *
68850937 CGAACTCGGACTCAACTCAACGAGCTC-GAGTGTTCGTATCCATAAGTGAAGTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
68851001 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACAAGCTCGGATGCCTAGTTACATCTCT
*
68851030 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
68851095 ACAAGTTCGGATGCC
66 ACAAGCTCGGATGCC
68851110 CAAATATCCC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 70 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:68857545 original size:43 final size:43
Alignment explanation
Indices: 68857490--68857578 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
68857480 GATTTTCGGG
68857490 GACGAAAATCCCTAAGGGGGGAGAGTTGTAACAGCCCGATTTA
1 GACGAAAATCCCTAAGGGGGGAGAGTTGTAACAGCCCGATTTA
68857533 GACGAAAATCCCTAAGGGGGGAGAGTTGTAACAGCCCGATTTA
1 GACGAAAATCCCTAAGGGGGGAGAGTTGTAACAGCCCGATTTA
68857576 GAC
1 GAC
68857579 CCTAATCGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.18
Consensus pattern (43 bp):
GACGAAAATCCCTAAGGGGGGAGAGTTGTAACAGCCCGATTTA
Found at i:68866892 original size:40 final size:40
Alignment explanation
Indices: 68866837--68867014 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
68866827 CGGATGATAA
* *
68866837 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
68866877 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
68866917 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
68866957 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
68866997 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68867015 TACTTGGTTG
Statistics
Matches: 126, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 13 0.10
40 113 0.90
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:68872263 original size:46 final size:45
Alignment explanation
Indices: 68872167--68872383 Score: 192
Period size: 46 Copynumber: 4.7 Consensus size: 45
68872157 TCTATATATA
* * *
68872167 CTGATGCCATGTCCCAGACATGATCTTACACTGACGCGTC-TAGC-A-A
1 CTGATG-CATGTCCCAGACATG-TCTTACACT-A-GCTTCATATCGAGG
*
68872213 CTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGG
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCTT-CATATCGAGG
* * * *
68872259 CTGATGCATGTCCC-GAACATGTCTTACACTAGCTCCCATTTCAATG
1 CTGATGCATGTCCCAG-ACATGTCTTACACTAGCT-TCATATCGAGG
* * *
68872305 CTGATGCTGTGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CTGATGC-ATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-ATCGAGG
*
68872353 CTGATGCATGTCCCAAACATGTCTTACACTA
1 CTGATGCATGTCCCAGACATGTCTTACACTA
68872384 CCGCACAAAT
Statistics
Matches: 143, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
42 3 0.02
43 2 0.01
44 11 0.08
45 17 0.12
46 62 0.43
47 21 0.15
48 26 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CTGATGCATGTCCCAGACATGTCTTACACTAGCTTCATATCGAGG
Found at i:68872355 original size:94 final size:92
Alignment explanation
Indices: 68872213--68872383 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 92
68872203 CGTCTAGCAA
* *
68872213 CTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGGCTGATGCATGTCCCGAACA
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCTGATGCATGTCCCAAACA
68872278 TGTCTTACACTAGCTCCCATTTCAATG
66 TGTCTTACACTAGCTCCCATTTCAATG
* * *
68872305 CTGATGCTGTGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCATGTCCCA
1 CTGATGC-ATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-ATCGAGGCTGATGCATGTCCCA
68872368 AACATGTCTTACACTA
62 AACATGTCTTACACTA
68872384 CCGCACAAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 49 0.70
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (92 bp):
CTGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCTGATGCATGTCCCAAACA
TGTCTTACACTAGCTCCCATTTCAATG
Found at i:68872356 original size:48 final size:46
Alignment explanation
Indices: 68872024--68872382 Score: 199
Period size: 48 Copynumber: 7.6 Consensus size: 46
68872014 GTATAATACC
*
68872024 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAA-GT-C-
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATGTGCT
* * * *
68872071 GGTGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAGATATCTGTGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTC--ATA-ATGTGCT
* * * * * *
68872121 GATGCCATGTCCTAGACATGGTCTTACAATGACACCTC-TATATATACT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGC-TCTCATA-ATGTGCT
* * * **
68872169 GATGCCATGTCCCAGACATGATCTTACACTGACGCGTC-T-A-GCAACT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTC-TCATAATG-TGCT
* * *
68872215 GATGCATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAGGCT
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-G-TGCT
* *
68872261 GATGCATGTCCC-GAACAT-GTCTTACACTAGCTCCCATTTCAA--TGCT
1 GATGCATGTCCCAG-ACATGGTCTTACACTGGCTCTCA--T-AATGTGCT
*
68872307 GATGCTGTGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATGC-ATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GCT
*
68872355 GATGCATGTCCCAAACAT-GTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
68872383 ACCGCACAAA
Statistics
Matches: 251, Mismatches: 36, Indels: 51
0.74 0.11 0.15
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.04
45 18 0.07
46 64 0.25
47 57 0.23
48 67 0.27
49 1 0.00
50 28 0.11
51 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGCT
Found at i:68877314 original size:46 final size:46
Alignment explanation
Indices: 68877184--68877400 Score: 183
Period size: 46 Copynumber: 4.7 Consensus size: 46
68877174 TATTTGTGCT
* * * *
68877184 GATGCCATGTCCCAAACATGGTCTTATACT-G-ACACATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCGAAGCC
* * ** *
68877230 GATGCATGTCCGAGACATGTTTTACACTAG-TTTACGTCTCGAAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACT-CATCTCGAAGCC
*
68877276 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTC-AATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAA-GCC
* * * * **
68877322 AATGCCATGTCCCAGACATGGTCTTACACAAGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAAGCC
*
68877370 AATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
68877401 TCACAATAAC
Statistics
Matches: 142, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 8 0.06
45 15 0.11
46 66 0.46
47 29 0.20
48 23 0.16
49 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAAGCC
Found at i:68881214 original size:14 final size:14
Alignment explanation
Indices: 68881171--68881217 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
68881161 CTAACCGGGA
*
68881171 TTTCTTTATGTTGG
1 TTTCTTTATCTTGG
68881185 ATTTCTTTATTCTTGG
1 -TTTCTTTA-TCTTGG
*
68881201 TTTCTCTATCTTGG
1 TTTCTTTATCTTGG
68881215 TTT
1 TTT
68881218 TTCTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 9 0.31
15 15 0.52
16 5 0.17
ACGTcount: A:0.09, C:0.13, G:0.15, T:0.64
Consensus pattern (14 bp):
TTTCTTTATCTTGG
Found at i:68886045 original size:18 final size:18
Alignment explanation
Indices: 68886022--68886075 Score: 81
Period size: 18 Copynumber: 2.9 Consensus size: 18
68886012 GTTACACAGC
68886022 CTGAGGACACGGGCGTGT
1 CTGAGGACACGGGCGTGT
68886040 CTGAGGACACGGGCGTGT
1 CTGAGGACACGGGCGTGT
**
68886058 CAAAGGCACACGGGCGTG
1 CTGAGG-ACACGGGCGTG
68886076 CCCTTGTGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
18 22 0.67
19 11 0.33
ACGTcount: A:0.20, C:0.24, G:0.43, T:0.13
Consensus pattern (18 bp):
CTGAGGACACGGGCGTGT
Found at i:68889136 original size:48 final size:46
Alignment explanation
Indices: 68889066--68889235 Score: 162
Period size: 48 Copynumber: 3.6 Consensus size: 46
68889056 CATCAGTGCT
* * *
68889066 GATGCCATGTCCCAGACATGGTCTTACACTGACACATATAACT-ATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGACACATAT---TGAGGCC
** * * *
68889114 GATGCCATGTTCCAAATTTGGTCTTACACTGGTTCTCATATTGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACT-G-ACACATATTGAGGCC
* *
68889162 GATGCCATATTCCAAACATGGTCTTACACTGACACATATCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGACACATATTGAGGCC
* * * *
68889208 AATGCTATGTCCCAGACATGGTCTTACA
1 GATGCCATGTTCCAAACATGGTCTTACA
68889236 TTGGCTCGCA
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 34 0.34
47 2 0.02
48 56 0.57
49 1 0.01
50 6 0.06
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGACACATATTGAGGCC
Found at i:68889191 original size:96 final size:98
Alignment explanation
Indices: 68889014--68889242 Score: 268
Period size: 96 Copynumber: 2.4 Consensus size: 98
68889004 GATTAAAATA
** *
68889014 CCGATGCCATGTCCCGGATATGGTCTTACACTGGCTCCCATACATCAGTGCTGATGCCATGTCCC
1 CCGATGCCATGTCCCAAATATGGTCTTACACTGGCTCCCATACATCAGTGCTGATGCCATATCCC
*
68889079 AGACATGGTCTTACACTGACACATATAACTATG
66 AAACATGGTCTTACACTGACACATATAACTATG
* * * * * * *
68889112 CCGATGCCATGTTCCAAATTTGGTCTTACACTGGTTCTCATA-TTGAG-GCTGATGCCATATTCC
1 CCGATGCCATGTCCCAAATATGGTCTTACACTGGCTCCCATACATCAGTGCTGATGCCATATCCC
* *
68889175 AAACATGGTCTTACACTGACACATAT--CGAGG
66 AAACATGGTCTTACACTGACACATATAACTATG
* * * * *
68889206 CCAATGCTATGTCCCAGACATGGTCTTACATTGGCTC
1 CCGATGCCATGTCCCAAATATGGTCTTACACTGGCTC
68889243 GCATTGTAAC
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
94 32 0.29
96 39 0.35
97 3 0.03
98 36 0.33
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (98 bp):
CCGATGCCATGTCCCAAATATGGTCTTACACTGGCTCCCATACATCAGTGCTGATGCCATATCCC
AAACATGGTCTTACACTGACACATATAACTATG
Found at i:68896050 original size:175 final size:175
Alignment explanation
Indices: 68895759--68896107 Score: 680
Period size: 175 Copynumber: 2.0 Consensus size: 175
68895749 CAAAAGTTGA
68895759 TAAATATGAGTTCTAAACGCTAAAGGGTTAAATTGAAGTGCATAATTAAAGTAGAGGTCCTCAAA
1 TAAATATGAGTTCTAAACGCTAAAGGGTTAAATTGAAGTGCATAATTAAAGTAGAGGTCCTCAAA
68895824 TGGTAATTAGACCATTATATTTTCATGGACAAAAATGGATATACATAGGTAGAAATAACTAAAAA
66 TGGTAATTAGACCATTATATTTTCATGGACAAAAATGGATATACATAGGTAGAAATAACTAAAAA
*
68895889 TTTTAATGAATGGCATTTTAGTAAAGTGTCAAATAAAAGAATTAG
131 TTTTAATGAAGGGCATTTTAGTAAAGTGTCAAATAAAAGAATTAG
*
68895934 TAAATATGAGTTCTAAACGCTAAGGGGTTAAATTGAAGTGCATAATTAAAGTAGAGGTCCTCAAA
1 TAAATATGAGTTCTAAACGCTAAAGGGTTAAATTGAAGTGCATAATTAAAGTAGAGGTCCTCAAA
68895999 TGGTAATTAGACCATTATATTTTCATGGACAAAAATGGATATACATAGGTAGAAATAACTAAAAA
66 TGGTAATTAGACCATTATATTTTCATGGACAAAAATGGATATACATAGGTAGAAATAACTAAAAA
68896064 TTTTAATGAAGGGCATTTTAGTAAAGTGTCAAATAAAAGAATTA
131 TTTTAATGAAGGGCATTTTAGTAAAGTGTCAAATAAAAGAATTA
68896108 AAAAGTGAAA
Statistics
Matches: 172, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
175 172 1.00
ACGTcount: A:0.43, C:0.09, G:0.18, T:0.30
Consensus pattern (175 bp):
TAAATATGAGTTCTAAACGCTAAAGGGTTAAATTGAAGTGCATAATTAAAGTAGAGGTCCTCAAA
TGGTAATTAGACCATTATATTTTCATGGACAAAAATGGATATACATAGGTAGAAATAACTAAAAA
TTTTAATGAAGGGCATTTTAGTAAAGTGTCAAATAAAAGAATTAG
Found at i:68897041 original size:55 final size:54
Alignment explanation
Indices: 68896954--68897207 Score: 240
Period size: 55 Copynumber: 4.8 Consensus size: 54
68896944 ATTAGGGTTT
*
68896954 AAGGATACCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGTTTCCAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCCAAGGC
* * * **
68897009 AAGGATACCATGTAAGGCCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCCAAGGC
* * * * *
68897064 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-CAAGGC
* * *
68897117 AAGGATACCATGTAAGACCATGTCGAGAGATGGCAA-TGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCCAAGGC
* * *
68897166 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA
68897208 CGTACCCGTG
Statistics
Matches: 165, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
49 37 0.22
52 7 0.04
53 38 0.23
54 11 0.07
55 68 0.41
56 4 0.02
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCCAAGGC
Found at i:68897160 original size:108 final size:110
Alignment explanation
Indices: 68896961--68897161 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
68896951 TTTAAGGATA
* *
68896961 CCATGTAAGACCATGCCAAGCCATGGCAATTGGTAAGGTTTCCAAGGCAAGGATACCATGTAAGG
1 CCATGTAAGACCATGCCAAGCCATGGCAATTAGTAAGGTTTCCAAGGCAAGGATACCATGTAAGA
*
68897026 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
68897071 CCATGTAAGACCATGCCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGCCATGGCAATTAGTAAGGTTTC-CAAGGCAAGGATACCATGTAAG
* * *
68897133 ACCATGTCGAGAGATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
68897162 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 6 0.07
110 26 0.32
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGCCATGGCAATTAGTAAGGTTTCCAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:68897303 original size:23 final size:23
Alignment explanation
Indices: 68897277--68897330 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
68897267 AAGGTAAGGT
*
68897277 AAGGTAAGACGAGTTAAACTAAA
1 AAGGTAAGACGAGTTAAACAAAA
* *
68897300 AAGGTAAGATGAGTTATACAAAA
1 AAGGTAAGACGAGTTAAACAAAA
68897323 AAGGTAAG
1 AAGGTAAG
68897331 TATATAATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.52, C:0.06, G:0.24, T:0.19
Consensus pattern (23 bp):
AAGGTAAGACGAGTTAAACAAAA
Found at i:68897446 original size:20 final size:20
Alignment explanation
Indices: 68897421--68897460 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
68897411 GTATTAATAA
*
68897421 ATTTAATTAAGTAAGTAAGT
1 ATTTAAGTAAGTAAGTAAGT
*
68897441 ATTTAAGTAAGTGAGTAAGT
1 ATTTAAGTAAGTAAGTAAGT
68897461 GAAGAAGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (20 bp):
ATTTAAGTAAGTAAGTAAGT
Found at i:68897448 original size:16 final size:16
Alignment explanation
Indices: 68897427--68897457 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68897417 ATAAATTTAA
68897427 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
68897443 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
68897458 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:68910783 original size:31 final size:29
Alignment explanation
Indices: 68910747--68910821 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
68910737 CTTCGAGCTC
* *
68910747 GCACACCCAGTGCCGTATTTTTTTCCAGCAT
1 GCACACCCAGTGCC--ATATATTTCCAGCAT
**
68910778 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
68910807 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
68910822 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 28 0.70
31 12 0.30
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:68916661 original size:2 final size:2
Alignment explanation
Indices: 68916654--68916688 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
68916644 AGTCATATTC
68916654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
68916689 AAACATAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:68921414 original size:97 final size:97
Alignment explanation
Indices: 68921248--68921442 Score: 365
Period size: 97 Copynumber: 2.0 Consensus size: 97
68921238 GACACAAAAT
*
68921248 CCCATTAATCTGATGAGCGAAATTTTTTCGTACATACCGACAAAATTTTACAGATCTCATCAAAC
1 CCCATTAATCTGATGAGCAAAATTTTTTCGTACATACCGACAAAATTTTACAGATCTCATCAAAC
68921313 ATTTAATCAACAAGCCACATAACATTTTTCTC
66 ATTTAATCAACAAGCCACATAACATTTTTCTC
68921345 CCCATTAATCTGATGAGCAAAATTTTTTCGTACATACCAGA-AAAATTTTACAGATCTCATCAAA
1 CCCATTAATCTGATGAGCAAAATTTTTTCGTACATACC-GACAAAATTTTACAGATCTCATCAAA
68921409 CATTTAATCAACAAGCCACATAACATTTTTCTC
65 CATTTAATCAACAAGCCACATAACATTTTTCTC
68921442 C
1 C
68921443 TCTTTACAAG
Statistics
Matches: 96, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
97 94 0.98
98 2 0.02
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (97 bp):
CCCATTAATCTGATGAGCAAAATTTTTTCGTACATACCGACAAAATTTTACAGATCTCATCAAAC
ATTTAATCAACAAGCCACATAACATTTTTCTC
Found at i:68925011 original size:40 final size:40
Alignment explanation
Indices: 68924966--68925095 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
68924956 CGGAATACAA
68924966 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
68925006 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
68925046 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
68925086 CCGGATATAA
1 CCGGATATAA
68925096 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:68933123 original size:40 final size:40
Alignment explanation
Indices: 68933078--68933207 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
68933068 CGGAATACAA
68933078 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
68933118 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
68933158 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
68933198 CCGGATATAA
1 CCGGATATAA
68933208 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:68937285 original size:48 final size:48
Alignment explanation
Indices: 68937110--68937428 Score: 200
Period size: 48 Copynumber: 6.6 Consensus size: 48
68937100 TAAAATGCCG
* * * * *
68937110 ATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATACATCG-GTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACT-G-GTTCACATATCGAG-GCCA
* * * * ***
68937160 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATAACTATGTTG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGTTCACATAT--CGAGGCCA
* ** ** * * *
68937208 ATGCCATGTTCCAAATGTTTTCTTACACTGGTTCGCATATTGAGGTCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGTTCACATATCGAGGCCA
* * * * * * *
68937256 ATGCCATGTCCCAAATATGGTCTTTCACTGGCTCACATAACAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGTTCACATATCGAGGCCA
* *
68937304 ATGCCATGTTCCAAACATGGTCTTACACT-G-ACACATATCGAGGCCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGTTCACATATCGAGGCCA
* * * * *
68937350 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTGCATAAACCG-GTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGG-TT-CACATATCGAG-GCCA
* *
68937400 ATGCCATGTCCCAGACATGGTTTTACACT
1 ATGCCATGTCCCAAACATGGTCTTACACT
68937429 AGCTCTCATA
Statistics
Matches: 209, Mismatches: 50, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
46 43 0.21
47 2 0.01
48 90 0.43
49 2 0.01
50 72 0.34
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGTTCACATATCGAGGCCA
Found at i:68937405 original size:96 final size:94
Alignment explanation
Indices: 68937103--68937428 Score: 291
Period size: 96 Copynumber: 3.4 Consensus size: 94
68937093 CTTAGGGTAA
* * *
68937103 AATGCCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTTTCATACATCG-GTGCCGATGCCA
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGA-C--ACAT--ATCGAG-GCCAATGCCA
*
68937166 TGTCCCAGACATGGTCTTACACTGAC-ACATATAAC
60 TGTCCCAGACATGGTCTTACACTGGCTACATA-AAC
* ** * ** ** * * * *
68937201 TATGTTGATGCCATGTTCCAAATGTTTTCTTACACTGGTTCGCATATTGAGGTCAATGCCATGTC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATATCGAGGCCAATGCCATGTC
* * *
68937266 CCAAATATGGTCTTTCACTGGCTCACAT-AAC
64 CCAGACATGGTCTTACACTGGCT-ACATAAAC
*
68937297 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGACACATATCGAGGCCAATGCCATGTCCC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATATCGAGGCCAATGCCATGTCCC
*
68937362 AGACATGGTCTTACACTGGCTTGCATAAACC
66 AGACATGGTCTTACACTGGC-TACATAAA-C
** * *
68937393 GGTGCCGATGCCATGTCCCAGACATGGTTTTACACT
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACT
68937429 AGCTCTCATA
Statistics
Matches: 181, Mismatches: 38, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
94 44 0.24
95 4 0.02
96 97 0.54
97 1 0.01
98 34 0.19
100 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (94 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATATCGAGGCCAATGCCATGTCCC
AGACATGGTCTTACACTGGCTACATAAAC
Found at i:68944633 original size:47 final size:48
Alignment explanation
Indices: 68944572--68944700 Score: 172
Period size: 47 Copynumber: 2.7 Consensus size: 48
68944562 AAACGATAAG
* * *
68944572 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACT-TATC-CTAGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCT-TCACTAAAA
* * *
68944619 TTCCTAAACCATGGCCCGTAGCCAAATTAAGGTAACTCTTCACTAAAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTTCACTAAAA
*
68944667 TACCTATACCATGGCCTGTAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
68944701 TCACTCACAC
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
47 35 0.50
48 35 0.50
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (48 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTTCACTAAAA
Found at i:68949896 original size:25 final size:25
Alignment explanation
Indices: 68949868--68949938 Score: 69
Period size: 25 Copynumber: 2.9 Consensus size: 25
68949858 ATATTACTTA
68949868 ATATAAATGTATGTTATAATAAATT
1 ATATAAATGTATGTTATAATAAATT
* *
68949893 ATATAAAATGCATG-TA-AATTATATT
1 ATAT-AAATGTATGTTATAA-TAAATT
68949918 ATAT-AAT-TATAGTTATAATAA
1 ATATAAATGTAT-GTTATAATAA
68949939 CATAAGCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
22 2 0.05
23 4 0.11
24 6 0.16
25 17 0.46
26 8 0.22
ACGTcount: A:0.49, C:0.01, G:0.07, T:0.42
Consensus pattern (25 bp):
ATATAAATGTATGTTATAATAAATT
Found at i:68950728 original size:25 final size:25
Alignment explanation
Indices: 68950680--68950728 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
68950670 CATAATTGAA
* * *
68950680 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
68950705 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
68950729 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:68951215 original size:43 final size:44
Alignment explanation
Indices: 68951132--68951215 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 44
68951122 GTGATTAATA
**
68951132 TTGAAATGGTAAAGATTGAGAAACGAATATGAGATGAGAAAAAG
1 TTGAAATGACAAAGATTGAGAAACGAATATGAGATGAGAAAAAG
* * *
68951176 TTGAAATGACAAAGA-TGAGCAATGATTATGAGATGAGAAA
1 TTGAAATGACAAAGATTGAGAAACGAATATGAGATGAGAAA
68951216 TGAAATATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 22 0.63
44 13 0.37
ACGTcount: A:0.49, C:0.04, G:0.26, T:0.21
Consensus pattern (44 bp):
TTGAAATGACAAAGATTGAGAAACGAATATGAGATGAGAAAAAG
Found at i:68955177 original size:30 final size:30
Alignment explanation
Indices: 68955143--68955213 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
68955133 CATGCCTTGC
*
68955143 CACATAGGCATGTGTCACACACAAGCAACA
1 CACATGGGCATGTGTCACACACAAGCAACA
**
68955173 CACATGGGCATGTGTCACACACGGGCAACA
1 CACATGGGCATGTGTCACACACAAGCAACA
68955203 CACATGGGCAT
1 CACATGGGCAT
68955214 TCACATGCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.34, C:0.30, G:0.23, T:0.14
Consensus pattern (30 bp):
CACATGGGCATGTGTCACACACAAGCAACA
Found at i:68957441 original size:27 final size:28
Alignment explanation
Indices: 68957411--68957516 Score: 146
Period size: 27 Copynumber: 3.9 Consensus size: 28
68957401 GACGAAGCGT
* *
68957411 TCTGGTGGTTTTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
68957438 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
68957466 TCTGGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
68957493 TCTGGTGACTCTGTCAC-AATATCT
1 TCTGGTGGCTCTGCCACAAATATCT
68957517 ATTCTGGCAG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
27 55 0.76
28 17 0.24
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:68957496 original size:55 final size:54
Alignment explanation
Indices: 68957410--68957516 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 54
68957400 GGACGAAGCG
* * *
68957410 TTCTGGTGGTTTTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCAC-AATATCTGT
*
68957465 TTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCT
1 TTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTGCCACAATATCT
68957517 ATTCTGGCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
54 15 0.32
55 32 0.68
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (54 bp):
TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAATATCTGT
Found at i:68958682 original size:50 final size:50
Alignment explanation
Indices: 68958537--68958689 Score: 119
Period size: 50 Copynumber: 3.1 Consensus size: 50
68958527 AGTTTAGTAA
* * *
68958537 TGGGGCAAGATGAAGCTACAACCTCAAATTTTGTATCCCTAAAGATGTAG
1 TGGGGCAAGATGAAGCTACAACCTCAAATCTCGTATCCCTAAAGATGCAG
* * * * * ***** * * * * *
68958587 T-AGACAAGATCAAAACTATAGTAGAAAATCTCATCTCCATGAAGATGCAT
1 TGGGGCAAGAT-GAAGCTACAACCTCAAATCTCGTATCCCTAAAGATGCAG
*
68958637 TGGGGCAAGATGAAGCTACAACCTCAAATCTCGTATCCCTAAAGATGAAG
1 TGGGGCAAGATGAAGCTACAACCTCAAATCTCGTATCCCTAAAGATGCAG
68958687 TGG
1 TGG
68958690 ATTGGATTGA
Statistics
Matches: 67, Mismatches: 34, Indels: 4
0.64 0.32 0.04
Matches are distributed among these distances:
49 7 0.10
50 53 0.79
51 7 0.10
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (50 bp):
TGGGGCAAGATGAAGCTACAACCTCAAATCTCGTATCCCTAAAGATGCAG
Found at i:68959234 original size:4 final size:4
Alignment explanation
Indices: 68959217--68959258 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
68959207 TGTCTGGCCC
* * *
68959217 AAAT AAAA AAAT AAAT AAAC AAAT AAAT AAA- AAAT TAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
68959259 AGTCCATTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:68959234 original size:12 final size:12
Alignment explanation
Indices: 68959217--68959259 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
68959207 TGTCTGGCCC
68959217 AAATAAAAAAAT
1 AAATAAAAAAAT
*
68959229 AAATAAACAAAT
1 AAATAAAAAAAT
68959241 AAAT-AAAAAAT
1 AAATAAAAAAAT
*
68959252 TAATAAAA
1 AAATAAAA
68959260 GTCCATTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (12 bp):
AAATAAAAAAAT
Found at i:68960424 original size:23 final size:22
Alignment explanation
Indices: 68960374--68960417 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
68960364 TTTAGGTTTC
*
68960374 AATTTAGTCCTTCATTTTTTAA
1 AATTTAGTCCTTCATTTTCTAA
*
68960396 AATTTAGTCCCTTTATTTTCTA
1 AATTTAGT-CCTTCATTTTCTA
68960418 TTATTTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.25, C:0.16, G:0.05, T:0.55
Consensus pattern (22 bp):
AATTTAGTCCTTCATTTTCTAA
Found at i:68968911 original size:17 final size:17
Alignment explanation
Indices: 68968889--68968926 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
68968879 ACATGGAATG
* *
68968889 TAAAATAAACTCGAACT
1 TAAAATAAACACGAAAT
68968906 TAAAATAAACACGAAAT
1 TAAAATAAACACGAAAT
68968923 TAAA
1 TAAA
68968927 CTCAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.61, C:0.13, G:0.05, T:0.21
Consensus pattern (17 bp):
TAAAATAAACACGAAAT
Found at i:68968952 original size:39 final size:40
Alignment explanation
Indices: 68968907--68969002 Score: 99
Period size: 39 Copynumber: 2.4 Consensus size: 40
68968897 ACTCGAACTT
68968907 AAAATAAACACGAAATTAAACTCAAAATAAT-CCAAAC-CC
1 AAAATAAACACGAAATTAAACTCAAAA-AATACCAAACTCC
* ** * *
68968946 AAAATAAAAAAAAAATTAAACTTAAAAAATACCCAAACTCG
1 AAAATAAACACGAAATTAAACTCAAAAAATA-CCAAACTCC
*
68968987 AAAAGAAAC-CGAAATT
1 AAAATAAACACGAAATT
68969003 GAAAATACTT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
38 3 0.07
39 23 0.51
40 11 0.24
41 8 0.18
ACGTcount: A:0.62, C:0.18, G:0.04, T:0.16
Consensus pattern (40 bp):
AAAATAAACACGAAATTAAACTCAAAAAATACCAAACTCC
Found at i:68969985 original size:15 final size:16
Alignment explanation
Indices: 68969965--68969997 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
68969955 CACGGGTGAA
*
68969965 TTATAACAAA-TATAT
1 TTATAAAAAATTATAT
68969980 TTATAAAAAATTATAT
1 TTATAAAAAATTATAT
68969996 TT
1 TT
68969998 TTTATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATAAAAAATTATAT
Found at i:68977860 original size:29 final size:29
Alignment explanation
Indices: 68977827--68977900 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
68977817 GTGACGAGAT
68977827 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68977856 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68977885 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68977901 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68977916 original size:29 final size:29
Alignment explanation
Indices: 68977884--68977959 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
68977874 CTGGAAATAT
* *
68977884 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
68977913 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
68977942 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
68977960 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:68977927 original size:58 final size:58
Alignment explanation
Indices: 68977827--68977959 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
68977817 GTGACGAGAT
* * * * * *
68977827 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
68977885 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
68977943 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
68977960 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:68985716 original size:29 final size:29
Alignment explanation
Indices: 68985683--68985756 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
68985673 GTGACGAGAT
68985683 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
68985712 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68985741 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68985757 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68985772 original size:29 final size:29
Alignment explanation
Indices: 68985740--68985815 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
68985730 CTGGAAATAT
* *
68985740 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
68985769 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
68985798 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
68985816 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:68985783 original size:58 final size:58
Alignment explanation
Indices: 68985683--68985815 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
68985673 GTGACGAGAT
* * * * * *
68985683 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
68985741 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
68985799 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
68985816 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:68992603 original size:33 final size:33
Alignment explanation
Indices: 68992561--68992670 Score: 193
Period size: 33 Copynumber: 3.3 Consensus size: 33
68992551 AAATTCCACT
68992561 GTAAAATTGTGAAATGTTGATTTGTATGGGTTG
1 GTAAAATTGTGAAATGTTGATTTGTATGGGTTG
*
68992594 GTAAAATTGTGAAATGTTGATTTGTATGGGTTA
1 GTAAAATTGTGAAATGTTGATTTGTATGGGTTG
68992627 GTAAAATTGTGAAATGTTGATTTGTATGGGTTG
1 GTAAAATTGTGAAATGTTGATTTGTATGGGTTG
68992660 TGATAAAATTG
1 -G-TAAAATTG
68992671 ATAAAATTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
33 64 0.88
34 1 0.01
35 8 0.11
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (33 bp):
GTAAAATTGTGAAATGTTGATTTGTATGGGTTG
Found at i:68994437 original size:42 final size:42
Alignment explanation
Indices: 68994378--68994516 Score: 154
Period size: 42 Copynumber: 3.3 Consensus size: 42
68994368 ACGTGGAAGG
* * * *
68994378 CCATACCTGGGATATGGCATCAATATGAAACTTCATGTAAGA
1 CCATATCTAGGATATGGCATCGATATGAGACTTCATGTAAGA
**
68994420 CCATATCTAGGATATGGCATCGATATGAGACTTTGTGTAAGA
1 CCATATCTAGGATATGGCATCGATATGAGACTTCATGTAAGA
* * * *
68994462 CCATAGCTGGGCTATTGGCATCGATACGAGA-TTACATGTAAGA
1 CCATATCTAGGATA-TGGCATCGATATGAGACTT-CATGTAAGA
*
68994505 CCATATTTAGGA
1 CCATATCTAGGA
68994517 CATAACATTG
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 49 0.62
43 30 0.38
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28
Consensus pattern (42 bp):
CCATATCTAGGATATGGCATCGATATGAGACTTCATGTAAGA
Found at i:68997110 original size:27 final size:26
Alignment explanation
Indices: 68996968--68997258 Score: 224
Period size: 27 Copynumber: 10.8 Consensus size: 26
68996958 ATTCTACCCT
* **
68996968 ACAGGGGTATTTCAGTAATTTTACCCT
1 ACAGGGGTATTTTAGTAATTTTA-CAA
* ** * **
68996995 ACAAGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTAGTAATTTTA-CAA
* * **
68997022 ACAGGGGTATTTCAGTAATTCTACCCT
1 ACAGGGGTATTTTAGTAATTTTA-CAA
* * * *
68997049 ACAGGGATATTTCAATAATTTTACAGG
1 ACAGGGGTATTTTAGTAATTTTACA-A
* * * *
68997076 TCAAGGGTATTTCAGTAATTTCACAA
1 ACAGGGGTATTTTAGTAATTTTACAA
*
68997102 ATCAGGGGTATTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTAGTAATTTTACAA
68997129 ACTAGGGGTATTTT-GATAATTTTACAA
1 AC-AGGGGTATTTTAG-TAATTTTACAA
* *
68997156 ACCAAGGGTATTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTAGTAATTTTACAA
* *
68997183 ACTAGGGGTATTTTGGTAATTTTATAA
1 AC-AGGGGTATTTTAGTAATTTTACAA
*
68997210 ACAAAGGGTATTTTAGTAATTTTACAA
1 AC-AGGGGTATTTTAGTAATTTTACAA
*
68997237 ACCAGGGGTATTTTGGTAATTT
1 A-CAGGGGTATTTTAGTAATTT
68997259 GGTAAACTAA
Statistics
Matches: 226, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.02
27 219 0.97
28 3 0.01
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (26 bp):
ACAGGGGTATTTTAGTAATTTTACAA
Found at i:68997265 original size:27 final size:27
Alignment explanation
Indices: 68997080--68997258 Score: 250
Period size: 27 Copynumber: 6.6 Consensus size: 27
68997070 TACAGGTCAA
** * *
68997080 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
68997107 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
68997134 GGGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
68997161 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
68997188 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
68997215 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
68997242 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
68997259 GGTAAACTAA
Statistics
Matches: 133, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 133 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:69001056 original size:27 final size:26
Alignment explanation
Indices: 69000914--69001204 Score: 197
Period size: 27 Copynumber: 10.8 Consensus size: 26
69000904 ATTCTACCCT
* **
69000914 ACAGGGGTATTTCAGTAATTTTACCCT
1 ACAGGGGTATTTTAGTAATTTTA-CAA
* ** * **
69000941 ACAAGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTTAGTAATTTTA-CAA
* * **
69000968 ACAGGGGTATTTCAGTAATTCTACCCT
1 ACAGGGGTATTTTAGTAATTTTA-CAA
* * * *
69000995 ACAAGGGTATTTCAATAATTTTACAGG
1 ACAGGGGTATTTTAGTAATTTTACA-A
* * * *
69001022 TCAAGGGTATTTCAGTAATTTCACAA
1 ACAGGGGTATTTTAGTAATTTTACAA
* *
69001048 ATCAGGGGTATTTTGGTAATTTCACAA
1 A-CAGGGGTATTTTAGTAATTTTACAA
*
69001075 ACTAGGTGTATTTT-GATAATTTTACAA
1 AC-AGGGGTATTTTAG-TAATTTTACAA
* *
69001102 ACCAAGGGTATTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTAGTAATTTTACAA
* *
69001129 ACTAGGGGTATTTTGGTAATTTTATAA
1 AC-AGGGGTATTTTAGTAATTTTACAA
**
69001156 ACAAAAGGTATTTTAGTAATTTTACAA
1 AC-AGGGGTATTTTAGTAATTTTACAA
*
69001183 ACCAGGGGTATTTTGGTAATTT
1 A-CAGGGGTATTTTAGTAATTT
69001205 GGTAAACTAA
Statistics
Matches: 224, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.02
27 217 0.97
28 3 0.01
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (26 bp):
ACAGGGGTATTTTAGTAATTTTACAA
Found at i:69001067 original size:81 final size:81
Alignment explanation
Indices: 69000902--69001204 Score: 233
Period size: 81 Copynumber: 3.7 Consensus size: 81
69000892 AAATAGTCAT
* * **
69000902 TAATTCTACCCTACAGGGGTATTTCAGTAATTTTAC-CCTACAAGGGTATTTCGGTAA-TTCTAC
1 TAATTCTACCCTACAAGGGTATTTCAATAATTTTACAAAT-CAAGGGTATTTCGGTAATTTC-AC
** **
69000965 -CCTACAGGGGTATTTCAG
64 AAAT-CAGGGGTATTTTGG
** *
69000983 TAATTCTACCCTACAAGGGTATTTCAATAATTTTACAGGTCAAGGGTATTTCAGTAATTTCACAA
1 TAATTCTACCCTACAAGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAA
69001048 ATCAGGGGTATTTTGG
66 ATCAGGGGTATTTTGG
** * ** * * *
69001064 TAATT-T-CACAAACTAGGTGTATTTTGATAATTTTACAAACCAAGGGTATTTTGGTAATTTTAC
1 TAATTCTAC-CCTACAAGG-GTATTTCAATAATTTTACAAATCAAGGGTATTTCGGTAATTTCAC
69001127 AAA-CTAGGGGTATTTTGG
64 AAATC-AGGGGTATTTTGG
* *** * * * * * *
69001145 TAATTTTA-TAAACAAAAGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 TAATTCTACCCTAC-AAGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCGGTAATTT
69001205 GGTAAACTAA
Statistics
Matches: 187, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
79 1 0.01
80 8 0.04
81 170 0.91
82 8 0.04
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.38
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCAATAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAA
ATCAGGGGTATTTTGG
Found at i:69001211 original size:27 final size:27
Alignment explanation
Indices: 69001026--69001204 Score: 223
Period size: 27 Copynumber: 6.6 Consensus size: 27
69001016 TACAGGTCAA
** * *
69001026 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69001053 GGGTATTTTGGTAATTTCACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
69001080 GTGTATTTTGATAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
69001107 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
69001134 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
69001161 AGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
69001188 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
69001205 GGTAAACTAA
Statistics
Matches: 129, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:69004593 original size:18 final size:18
Alignment explanation
Indices: 69004567--69004601 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69004557 ATTCCTTATA
* *
69004567 TCAATCATCCTTCATCTC
1 TCAAACATCATTCATCTC
69004585 TCAAACATCATTCATCT
1 TCAAACATCATTCATCT
69004602 TTCACTCTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (18 bp):
TCAAACATCATTCATCTC
Found at i:69006097 original size:7 final size:7
Alignment explanation
Indices: 69006085--69006117 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
69006075 CCCAGTGGTT
69006085 AATGAAA
1 AATGAAA
69006092 AATGAAA
1 AATGAAA
69006099 AATGAAA
1 AATGAAA
*
69006106 AAT-CAA
1 AATGAAA
69006112 AATGAA
1 AATGAA
69006118 GTGATATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.70, C:0.03, G:0.12, T:0.15
Consensus pattern (7 bp):
AATGAAA
Found at i:69013868 original size:27 final size:27
Alignment explanation
Indices: 69013838--69013899 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
69013828 GGGCAAAATG
69013838 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
69013865 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
69013892 GTAATTTT
1 GTAATTTT
69013900 TAAACCATGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:69013939 original size:27 final size:27
Alignment explanation
Indices: 69013880--69013979 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
69013870 TTTACCCTAC
* * *
69013880 AGGGGTATTTTAGTAATTTT-TAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
69013906 ATGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
69013933 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
*
69013959 TGAGGGTATTTCT-GTAATTTT
1 AG-GGGTATTT-TGGTAATTTT
69013980 GTAAATCGAG
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
26 20 0.31
27 44 0.68
28 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:69013985 original size:27 final size:27
Alignment explanation
Indices: 69013882--69013993 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
69013872 TACCCTACAG
* * *
69013882 GGGTATTTTAGTAATTTT-TAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
69013907 TGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
69013934 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATCGA
**
69013962 GGGTATTTCT-GTAATTTTGTAAATCGA
1 GGGTATTT-TGGTAATTTTACAAATCGA
69013989 GGGTA
1 GGGTA
69013994 AAATAGTAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 17 0.23
27 55 0.74
28 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:69014002 original size:27 final size:27
Alignment explanation
Indices: 69013972--69014181 Score: 237
Period size: 27 Copynumber: 7.8 Consensus size: 27
69013962 GGGTATTTCT
* *
69013972 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * * *
69013999 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
69014026 GTAATTCTATAAATCGATGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
69014052 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* *
69014080 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
69014107 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
69014134 GTAATTATGTAAATCG-GGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
69014159 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
69014182 CTTTGGTAAT
Statistics
Matches: 157, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
25 1 0.01
26 24 0.15
27 131 0.83
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:69014058 original size:81 final size:80
Alignment explanation
Indices: 69013973--69014174 Score: 289
Period size: 81 Copynumber: 2.5 Consensus size: 80
69013963 GGTATTTCTG
*
69013973 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATAA
1 TAATTTTGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGAGAAAAACAGTAATTCTATAA
*
69014038 ATCGATGGTAAAACGA
65 ATCGAGGGTAAAACGA
* * * *
69014054 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAA
1 TAATTTTGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGAGAAAAACAGTAATTCTATAA
*
69014119 ATCGAGGGTAAAACGG
65 ATCGAGGGTAAAACGA
* *
69014135 TAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATC
1 TAATTTTGTAAATCGAGGGTAAAAAG-TAATTCTGTAAATC
69014175 GGGGGTACTT
Statistics
Matches: 110, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
79 1 0.01
80 22 0.20
81 87 0.79
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.30
Consensus pattern (80 bp):
TAATTTTGTAAATCGAGGGTAAAAAGTAATTCTGTAAATCAAGAGAAAAACAGTAATTCTATAAA
TCGAGGGTAAAACGA
Found at i:69014208 original size:27 final size:27
Alignment explanation
Indices: 69014187--69014276 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
69014177 GGGTACTTTG
*
69014187 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
69014214 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
69014241 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
69014268 GTAATTTTA
1 GTAATTTTA
69014277 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:69014235 original size:54 final size:54
Alignment explanation
Indices: 69014170--69014276 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
69014160 ATAATTCTGT
* * *
69014170 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
69014224 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
69014277 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:69014290 original size:27 final size:27
Alignment explanation
Indices: 69014187--69014291 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
69014177 GGGTACTTTG
* *
69014187 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
69014214 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
69014241 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
69014268 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
69014292 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:69018146 original size:27 final size:27
Alignment explanation
Indices: 69018116--69018177 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
69018106 GGGCAAAATG
69018116 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
69018143 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
69018170 GTAATTTT
1 GTAATTTT
69018178 TAAACCATGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:69018229 original size:27 final size:27
Alignment explanation
Indices: 69018195--69018275 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
69018185 TGGGTATGGG
69018195 TTTTGGTAATTTTACAAACTAG-GGGTA
1 TTTTGGTAATTTTACAAA-TAGAGGGTA
*
69018222 TTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTACAAATAGAGGGTA
** *
69018249 TTTCT-GTAATTTTGTAAATCGAGGGTA
1 TTT-TGGTAATTTTACAAATAGAGGGTA
69018276 AAATAGTAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.04
27 45 0.94
28 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATAGAGGGTA
Found at i:69018284 original size:27 final size:27
Alignment explanation
Indices: 69018254--69018462 Score: 219
Period size: 27 Copynumber: 7.8 Consensus size: 27
69018244 GGGTATTTCT
* **
69018254 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACC
* * * *
69018281 GTAATTCTGTAAATCAAGAGAAAAATC
1 GTAATTCTGTAAATCGAGGGTAAAACC
* *
69018308 GTAATTCTATAAATCGACGGTAAAA-C
1 GTAATTCTGTAAATCGAGGGTAAAACC
* *
69018334 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACC
* *
69018362 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACC
* * *
69018389 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACC
*
69018416 GTAATTATGTAAATCG-GGGTAAAA-C
1 GTAATTCTGTAAATCGAGGGTAAAACC
69018441 GATAATTCTGTAAATCG-GGGTA
1 G-TAATTCTGTAAATCGAGGGTA
69018463 CTTTGGTAAT
Statistics
Matches: 155, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.01
26 29 0.19
27 124 0.80
28 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACC
Found at i:69018312 original size:54 final size:54
Alignment explanation
Indices: 69018254--69018462 Score: 246
Period size: 54 Copynumber: 3.9 Consensus size: 54
69018244 GGGTATTTCT
* * * * *
69018254 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCAAGAGAAAAATC-
1 GTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAA-CA
* * *
69018308 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
* * * * *
69018362 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
*
69018416 GTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
69018463 CTTTGGTAAT
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
52 5 0.04
53 24 0.18
54 104 0.78
55 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACA
Found at i:69018340 original size:81 final size:80
Alignment explanation
Indices: 69018255--69018456 Score: 291
Period size: 81 Copynumber: 2.5 Consensus size: 80
69018245 GGTATTTCTG
69018255 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATC-GTAATTCTATA
1 TAATTTTGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGAGAAAAA-CGGTAATTCTATA
69018319 AATCGACGGTAAAACGA
64 AATCGACGGTAAAACGA
* * *
69018336 TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAA
1 TAATTTTGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGAGAAAAACGGTAATTCTATAA
* *
69018401 ATCGAGGGTAAAACGG
65 ATCGACGGTAAAACGA
* *
69018417 TAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATC
1 TAATTTTGTAAATCGAGGGTAAAAAG-TAATTCTGTAAATC
69018457 GGGGTACTTT
Statistics
Matches: 111, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
79 1 0.01
80 23 0.21
81 87 0.78
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.29
Consensus pattern (80 bp):
TAATTTTGTAAATCGAGGGTAAAAAGTAATTCTGTAAATCAAGAGAAAAACGGTAATTCTATAAA
TCGACGGTAAAACGA
Found at i:69018498 original size:27 final size:26
Alignment explanation
Indices: 69018468--69018557 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
69018458 GGGTACTTTG
69018468 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
69018495 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
69018522 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
69018549 GTAATTTTA
1 GTAATTTTA
69018558 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:69018509 original size:53 final size:54
Alignment explanation
Indices: 69018452--69018557 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
69018442 ATAATTCTGT
* *
69018452 AAATCG-GGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
69018505 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
69018558 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 12 0.27
54 33 0.73
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:69018571 original size:27 final size:27
Alignment explanation
Indices: 69018468--69018572 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
69018458 GGGTACTTTG
* *
69018468 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
69018495 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
69018522 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
69018549 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
69018573 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:69022424 original size:27 final size:27
Alignment explanation
Indices: 69022394--69022455 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
69022384 GGGCAAAATG
69022394 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
69022421 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
69022448 GTAATTTT
1 GTAATTTT
69022456 TAAACCATGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:69022495 original size:27 final size:27
Alignment explanation
Indices: 69022436--69022535 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
69022426 TTTACCCTAC
* * *
69022436 AGGGGTATTTTAGTAATTTT-TAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
69022462 ATGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
69022489 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
*
69022515 TGAGGGTATTTCT-GTAATTTT
1 AG-GGGTATTT-TGGTAATTTT
69022536 GTAAATCGAG
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
26 20 0.31
27 44 0.68
28 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:69022541 original size:27 final size:27
Alignment explanation
Indices: 69022438--69022549 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
69022428 TACCCTACAG
* * *
69022438 GGGTATTTTAGTAATTTT-TAAA-CCA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
69022463 TGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
69022490 GGGGTATTTTGGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAATCGA
**
69022518 GGGTATTTCT-GTAATTTTGTAAATCGA
1 GGGTATTT-TGGTAATTTTACAAATCGA
69022545 GGGTA
1 GGGTA
69022550 AAATAGTAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 17 0.23
27 55 0.74
28 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:69022558 original size:27 final size:27
Alignment explanation
Indices: 69022528--69022737 Score: 228
Period size: 27 Copynumber: 7.8 Consensus size: 27
69022518 GGGTATTTCT
* *
69022528 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * * *
69022555 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
69022582 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
69022608 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAACA
* * *
69022636 ATAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
69022663 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
69022690 GTAATTATGTAAATCG-GGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
69022715 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTA
69022738 CTTTGGTAAT
Statistics
Matches: 155, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.01
26 24 0.15
27 130 0.84
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:69022614 original size:81 final size:80
Alignment explanation
Indices: 69022529--69022730 Score: 280
Period size: 81 Copynumber: 2.5 Consensus size: 80
69022519 GGTATTTCTG
*
69022529 TAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATAGTAATTCTATAA
1 TAATTTTGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGAGAAAAACAGTAATTCTATAA
69022594 ATCGACGGTAAAACGA
65 ATCGACGGTAAAACGA
* * * * *
69022610 TAATTTTGTAAATCGAGGGTAAAACAATAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAA
1 TAATTTTGTAAATCGAGGGTAAAA-AGTAATTCTGTAAATCAAGAGAAAAACAGTAATTCTATAA
* *
69022675 ATCGAGGGTAAAACGG
65 ATCGACGGTAAAACGA
* *
69022691 TAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATC
1 TAATTTTGTAAATCGAGGGTAAAAAG-TAATTCTGTAAATC
69022731 GGGGGTACTT
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 22 0.20
81 86 0.80
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (80 bp):
TAATTTTGTAAATCGAGGGTAAAAAGTAATTCTGTAAATCAAGAGAAAAACAGTAATTCTATAAA
TCGACGGTAAAACGA
Found at i:69022764 original size:27 final size:27
Alignment explanation
Indices: 69022743--69022832 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
69022733 GGGTACTTTG
*
69022743 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
69022770 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
69022797 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
69022824 GTAATTTTA
1 GTAATTTTA
69022833 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:69022784 original size:80 final size:81
Alignment explanation
Indices: 69022500--69022791 Score: 273
Period size: 81 Copynumber: 3.6 Consensus size: 81
69022490 GGGGTATTTT
* * *** * * *
69022500 GGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGT
* * *
69022565 AAATCAAGAGAAAAAT
66 AAATCAAGGGTAAAAC
* * * *
69022581 AGTAATTCTATAAATCGACGGTAAAAC-GATAATTTTGTAAATCGAGGGTAAAACAATAATTCTG
1 GGTAATTTTACAAATCGAAGGTAAAACAG-TAATTTTGTAAATCGAGGGTAAAACAATAATTCTG
69022645 TAAATCAAGGGTAAAAC
65 TAAATCAAGGGTAAAAC
* * * * *
69022662 GGTAATTTTATAAATCGAGGGTAAAACGGTAATTATGTAAATCG-GGGTAAAACGATAATTCTGT
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGT
** ****
69022726 AAATCGGGGGTACTTT
66 AAATCAAGGGTAAAAC
* *** **
69022742 GGTAATTTTACAAGTCGAAGGTATTTCAGTAATTTTACAAATCGAGGGTA
1 GGTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATCGAGGGTA
69022792 TTTCAGTATT
Statistics
Matches: 174, Mismatches: 34, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
80 64 0.37
81 109 0.63
82 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.32
Consensus pattern (81 bp):
GGTAATTTTACAAATCGAAGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAATAATTCTGT
AAATCAAGGGTAAAAC
Found at i:69022791 original size:54 final size:54
Alignment explanation
Indices: 69022726--69022832 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
69022716 ATAATTCTGT
* * *
69022726 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
69022780 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
69022833 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Done.