Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 243 of 427
Found at i:69022846 original size:27 final size:27
Alignment explanation
Indices: 69022743--69022847 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
69022733 GGGTACTTTG
* *
69022743 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
69022770 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
69022797 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
69022824 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
69022848 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:69025046 original size:36 final size:35
Alignment explanation
Indices: 69024969--69025047 Score: 86
Period size: 36 Copynumber: 2.2 Consensus size: 35
69024959 TTATAATCAA
* * *
69024969 TATCACATGGGATGAAAATATACCCACAAACTTAC
1 TATCACATGGCATGAAAACATACCCACAAACTCAC
* * * *
69025004 TGTCACATGGCATGAATAGCATACCCTCATACTCAC
1 TATCACATGGCATGAA-AACATACCCACAAACTCAC
69025040 TATCACAT
1 TATCACAT
69025048 CAGTCATCAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
35 14 0.40
36 21 0.60
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (35 bp):
TATCACATGGCATGAAAACATACCCACAAACTCAC
Found at i:69026624 original size:35 final size:35
Alignment explanation
Indices: 69026547--69026625 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
69026537 GTTCTTTTGG
*
69026547 GGCGACACCATGTAAACAGTATATAGATACTTCGA
1 GGCGACACCATGTAAACAGTATACAGATACTTCGA
* ** * *
69026582 GGTGACACCATGTAAATGGTATACATATCCTAT-GA
1 GGCGACACCATGTAAACAGTATACAGATACT-TCGA
69026617 GGCGACACC
1 GGCGACACC
69026626 TTAAAAGGGG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 35 0.97
36 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (35 bp):
GGCGACACCATGTAAACAGTATACAGATACTTCGA
Found at i:69030790 original size:7 final size:7
Alignment explanation
Indices: 69030755--69030787 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
69030745 CCAATGCTAC
69030755 CACATAT
1 CACATAT
69030762 CACATAT
1 CACATAT
69030769 CACATAT
1 CACATAT
*
69030776 CACATGT
1 CACATAT
69030783 CACAT
1 CACAT
69030788 GTCGCTCGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.39, C:0.30, G:0.03, T:0.27
Consensus pattern (7 bp):
CACATAT
Found at i:69031125 original size:25 final size:25
Alignment explanation
Indices: 69031097--69031145 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
69031087 CCAGAGGACC
* *
69031097 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
69031122 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
69031146 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:69032742 original size:11 final size:11
Alignment explanation
Indices: 69032726--69032751 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
69032716 TCTTAACAAA
69032726 AATTACAAAAT
1 AATTACAAAAT
69032737 AATTACAAAAT
1 AATTACAAAAT
69032748 AATT
1 AATT
69032752 TTCAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (11 bp):
AATTACAAAAT
Found at i:69043066 original size:25 final size:25
Alignment explanation
Indices: 69043029--69043078 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
69043019 TTTTAATGCC
* * *
69043029 TTAAGAATTCTACAACCTAGTATTA
1 TTAACAATGCTACAACATAGTATTA
*
69043054 TTAACAATGCTACAACATATTATTA
1 TTAACAATGCTACAACATAGTATTA
69043079 AAATAAATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.36
Consensus pattern (25 bp):
TTAACAATGCTACAACATAGTATTA
Found at i:69064017 original size:71 final size:71
Alignment explanation
Indices: 69063933--69064096 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69063923 CGATTTGTCT
69063933 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69063998 CTTTCA
66 CTTTCA
69064004 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69064069 CTTTCA
66 CTTTCA
69064075 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69064097 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69064134 original size:71 final size:70
Alignment explanation
Indices: 69063933--69064130 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
69063923 CGATTTGTCT
* * * *
69063933 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69063998 CTTTCA
65 CTTTCA
* * * *
69064004 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69064069 CTTTCA
65 CTTTCA
* *
69064075 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69064131 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69065837 original size:40 final size:40
Alignment explanation
Indices: 69065780--69065996 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
69065770 CAGATGATAA
* *
69065780 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
69065820 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
69065860 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
69065899 CCGGGCTAGGTCACGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
69065939 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
69065979 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69065997 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 55 0.34
40 106 0.65
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69065916 original size:79 final size:80
Alignment explanation
Indices: 69065776--69065996 Score: 324
Period size: 79 Copynumber: 2.8 Consensus size: 80
69065766 TATCCAGATG
* * *
69065776 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCTCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCACGAAGGC
69065840 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* *
69065856 AT-ATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAGGTCACGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCACGAAGGCA
69065920 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
69065935 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCACGAAGG
69065997 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
79 87 0.68
80 41 0.32
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCACGAAGGCA
TTTGTGCGAGTTACT
Found at i:69065992 original size:119 final size:119
Alignment explanation
Indices: 69065780--69065996 Score: 321
Period size: 119 Copynumber: 1.8 Consensus size: 119
69065770 CAGATGATAA
* * * *
69065780 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCACGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
* * *
69065845 TGCGAGTTACTATATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 AGCGAGTTACTATATCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
69065899 CCGGGCTAGGTCACGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCACGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATTT
69065963 GAGCGAG-TAGCTATATCCGGCTAAATCCCGAAGG
65 GAGCGAGTTA-CTATATCCGGCTAAATCCCGAAGG
69065997 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
118 4 0.05
119 83 0.95
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCACGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTTG
AGCGAGTTACTATATCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69068922 original size:40 final size:40
Alignment explanation
Indices: 69068867--69069040 Score: 273
Period size: 40 Copynumber: 4.4 Consensus size: 40
69068857 CTTGCTCAAA
69068867 GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG
1 GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG
69068907 GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG
1 GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG
* *
69068947 GGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCG
1 GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG
** * *
69068987 GG-CTTAGCCCGAAT-TAGTCACTAGCACAAATGCCTTCG
1 GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG
69069025 GGACTTAGCCC-GTTAT
1 GGACTTAGCCCGGTTAT
69069041 CATCCGAATA
Statistics
Matches: 124, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
38 25 0.20
39 19 0.15
40 80 0.65
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCG
Found at i:69077123 original size:59 final size:58
Alignment explanation
Indices: 69077050--69077181 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
69077040 ATTTAAGCCC
* * * * *
69077050 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
69077109 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
69077167 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
69077182 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.41
59 36 0.57
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69077139 original size:29 final size:29
Alignment explanation
Indices: 69077099--69077181 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
69077089 TGCCGTATTT
69077099 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69077128 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69077157 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
69077182 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:69078378 original size:20 final size:18
Alignment explanation
Indices: 69078340--69078394 Score: 69
Period size: 20 Copynumber: 3.0 Consensus size: 18
69078330 AGAATGAACA
69078340 CTTTTTTTTTTC-TTT-T
1 CTTTTTTTTTTCATTTCT
69078356 CTTTGTTTTTTTCATATTCT
1 CTTT-TTTTTTTCAT-TTCT
69078376 CTTTTTTTTTTTCATTTCT
1 C-TTTTTTTTTTCATTTCT
69078395 TTATTCTTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.12
17 8 0.24
18 1 0.03
19 6 0.18
20 12 0.35
21 3 0.09
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (18 bp):
CTTTTTTTTTTCATTTCT
Found at i:69089864 original size:59 final size:58
Alignment explanation
Indices: 69089791--69089922 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
69089781 ATTTAAGCCC
* * * * *
69089791 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
69089850 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
69089908 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
69089923 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.41
59 36 0.57
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69089880 original size:29 final size:29
Alignment explanation
Indices: 69089840--69089922 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
69089830 TGCCGTATTT
69089840 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69089869 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69089898 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
69089923 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:69091120 original size:21 final size:20
Alignment explanation
Indices: 69091081--69091137 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
69091071 AGACAGAACA
69091081 CTTT-TTTTT-TTC-TTT-T
1 CTTTGTTTTTCTTCATTTCT
69091097 CTTTGTTTTTCTTCATATTCT
1 CTTTGTTTTTCTTCAT-TTCT
* *
69091118 CTTTTTTTTTTTTCATTTCT
1 CTTTGTTTTTCTTCATTTCT
69091138 TTATTCTTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 3 0.09
19 1 0.03
20 6 0.18
21 15 0.44
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (20 bp):
CTTTGTTTTTCTTCATTTCT
Found at i:69093713 original size:40 final size:40
Alignment explanation
Indices: 69093664--69093830 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
69093654 TCTTCGGAAT
* * *
69093664 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
69093703 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
69093743 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
69093783 TTAGCCCGGATATAATC-ACTAGCATAAATG-CTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
69093822 TTAGCCCGG
1 TTAGCCCGG
69093831 GTATCATTCA
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 19 0.18
40 84 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:69095980 original size:40 final size:40
Alignment explanation
Indices: 69095923--69096140 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
69095913 CGGATGATAA
*
69095923 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATA-T
* *
69095963 CTGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
69096003 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* *
69096043 CCGGGCTAGGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
* *
69096083 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATAT
*
69096123 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69096141 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
39 17 0.10
40 145 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
Found at i:69099375 original size:28 final size:27
Alignment explanation
Indices: 69099314--69099381 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
69099304 AGTGAGTCCA
69099314 CACACTTAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTATATAATCAACTCG
*
69099341 CACACTTAGTGCTATATGATCAAACTCG
1 CACACTTAGTGCTATATAATC-AACTCG
69099369 CACACTTAGTGCT
1 CACACTTAGTGCT
69099382 GTACAAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (27 bp):
CACACTTAGTGCTATATAATCAACTCG
Found at i:69100638 original size:27 final size:26
Alignment explanation
Indices: 69100608--69100708 Score: 87
Period size: 27 Copynumber: 3.7 Consensus size: 26
69100598 TTTAGTTTAC
*
69100608 TAAAATTACCGAAATATCCTTAATTTG
1 TAAAATTACCGAAATA-CCTTGATTTG
* * *
69100635 TAAAAAAATACTGAAATACCCTCGATTTG
1 T--AAAATTACCGAAATA-CCTTGATTTG
* *
69100664 TAAATTTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTT-GATTTG
69100691 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
69100709 CCCGATTTAC
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 6 0.10
27 31 0.53
29 22 0.37
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAAATTACCGAAATACCTTGATTTG
Found at i:69100650 original size:29 final size:29
Alignment explanation
Indices: 69100609--69100667 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
69100599 TTAGTTTACT
* * *
69100609 AAAATTACCGAAATATCCTTAATTTGTAA
1 AAAAATACCGAAATACCCTCAATTTGTAA
* *
69100638 AAAAATACTGAAATACCCTCGATTTGTAA
1 AAAAATACCGAAATACCCTCAATTTGTAA
69100667 A
1 A
69100668 TTTACCGAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (29 bp):
AAAAATACCGAAATACCCTCAATTTGTAA
Found at i:69100735 original size:27 final size:27
Alignment explanation
Indices: 69100705--69101158 Score: 567
Period size: 27 Copynumber: 16.8 Consensus size: 27
69100695 ATTACCAAAG
*
69100705 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
69100732 TACCC-CTAATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
69100759 TACCC-CTGATTTACATG-ATTATCGTTT
1 TACCCTC-GATTTACA-GAATTACCGTTT
* *
69100786 TACCCTCGACTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
69100813 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
69100840 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ** *
69100867 TACCCTCCATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
69100894 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
69100921 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
69100948 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
69100975 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* * *
69101002 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
69101029 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
69101056 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
69101083 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
69101110 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
69101137 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
69101159 TAAAATACCC
Statistics
Matches: 376, Mismatches: 43, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
26 4 0.01
27 369 0.98
28 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:69101195 original size:81 final size:81
Alignment explanation
Indices: 69100651--69101202 Score: 299
Period size: 81 Copynumber: 6.8 Consensus size: 81
69100641 AATACTGAAA
** * * * * * * * *
69100651 TACCCTCGATTTGTAAATTTACCGAAATACCTTCGACTTGTAAAATTACC-AAAGTACCCCCGAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAA-TACCCTCGAT
69100715 TTACAGAATTACCGTTT
65 TTACAGAATTACCGTTT
* * * **** * * ***
69100732 TACCC-CTAATTTACATAATTATCGTTTTACCC-CTGATTTACATG-ATTATCGTTTTACCCTCG
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTC-GATTTATA-GAATTACCGCAATACCCTCG
* *
69100794 ACTTACAGAATTACTGTTT
63 ATTTACAGAATTACCGTTT
* * ***** *** *
69100813 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCCATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATT
** *
69100878 TGTAAAATTACCGTTT
66 TACAGAATTACCGTTT
* **** * *****
69100894 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TTTATAGAATTACCGCAATACCCTCGAT
*
69100958 TTATAGAATTACCGTTT
65 TTACAGAATTACCGTTT
* * *** * * * * ***
69100975 TACCC-CTAATTTACATAATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGAT
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGAT
69101039 TTACAGAATTACCGTTT
65 TTACAGAATTACCGTTT
* *** * *** *
69101056 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATT
*
69101121 TACAGAATTACTGTTT
66 TACAGAATTACCGTTT
* * * * *
69101137 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAG-AATTACCGCAATACCCTCGAT
69101201 TT
65 TT
69101203 GTAAAACTAC
Statistics
Matches: 385, Mismatches: 74, Indels: 24
0.80 0.15 0.05
Matches are distributed among these distances:
80 6 0.02
81 376 0.98
82 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTATAGAATTACCGCAATACCCTCGATT
TACAGAATTACCGTTT
Found at i:69102199 original size:25 final size:25
Alignment explanation
Indices: 69102171--69102218 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69102161 TTATACCATG
* * *
69102171 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
69102196 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
69102219 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:69102321 original size:20 final size:20
Alignment explanation
Indices: 69102261--69102321 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
69102251 ATAAATATGG
*
69102261 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
69102281 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
69102301 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
69102321 T
1 T
69102322 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:69102398 original size:24 final size:24
Alignment explanation
Indices: 69102371--69102537 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
69102361 GAGGAAGTGA
69102371 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
69102395 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
69102419 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
69102443 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
69102466 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
69102490 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
69102514 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
69102538 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:69102488 original size:71 final size:71
Alignment explanation
Indices: 69102371--69102538 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
69102361 GAGGAAGTGA
69102371 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
69102436 AGTTATC
65 AGTTATC
** *
69102443 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
69102508 GTTATT
66 GTTATC
*
69102514 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
69102539 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:69102764 original size:31 final size:31
Alignment explanation
Indices: 69102729--69102792 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
69102719 CGTTTACAGT
69102729 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
69102760 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
69102791 AA
1 AA
69102793 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:69110354 original size:46 final size:44
Alignment explanation
Indices: 69110209--69110562 Score: 218
Period size: 46 Copynumber: 7.5 Consensus size: 44
69110199 ATTGTGTGCT
* *
69110209 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-ACATTTTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGA-TGT-A-AG-C
* * * **
69110255 AGTGTAAAACCATGTCTGGGACATGGCATCGGCATTGAGACGGGAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGATGTAAGC
69110302 TAGTGTAAGACATGTCTGGGACATGCATCGGTCTCGAGATGTAAGC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGATGTAAGC
*
69110348 AAGTGTAAGACATGTCTGGGACATGCATCGGTTACGAGATGT--GTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTAAG-C
* * * * *
69110393 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACG-TATAGCTATGTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCGAGAT-G-TAAG-C
* * * *
69110441 AGTGTAAGACCACGTATGGGACATGGCATCGGCACGGATATGTGAGAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTC-GAGATGT-A-AG-C
* * *
69110491 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-TA-ATGGATGAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCGAGAT-G-TAAGC
69110537 TAGTGTAAGACCATGTCTGGGACATG
1 -AGTGTAAGA-CATGTCTGGGACATG
69110563 GCATTGACAT
Statistics
Matches: 257, Mismatches: 29, Indels: 44
0.78 0.09 0.13
Matches are distributed among these distances:
44 12 0.05
45 18 0.07
46 72 0.28
47 58 0.23
48 56 0.22
49 4 0.02
50 35 0.14
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTAAGC
Found at i:69118765 original size:14 final size:14
Alignment explanation
Indices: 69118746--69118775 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
69118736 TAAGGACAAG
69118746 ATTCGCCTCTTCAC
1 ATTCGCCTCTTCAC
69118760 ATTCGCCTCTTCAC
1 ATTCGCCTCTTCAC
69118774 AT
1 AT
69118776 CTCTTCAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.17, C:0.40, G:0.07, T:0.37
Consensus pattern (14 bp):
ATTCGCCTCTTCAC
Found at i:69127278 original size:40 final size:40
Alignment explanation
Indices: 69127233--69127360 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 40
69127223 CGGAATATAA
*
69127233 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69127273 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
69127313 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69127353 CCGGATAT
1 CCGGATAT
69127361 TATTTCCAGC
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69149343 original size:44 final size:42
Alignment explanation
Indices: 69149293--69149441 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 42
69149283 TGTGTTTTCG
69149293 TGTAAGACCGCGTCTGGGACATTGGCATCGACTTATGATTTACA
1 TGTAAGACCGCGTCTGGGACATTGGCATCGA-TT-TGATTTACA
* * * * *
69149337 TGTAAGA-CGATGTATGGGACATCGGCATTGTATTTTATTT-CA
1 TGTAAGACCG-CGTCTGGGACATTGGCATCG-ATTTGATTTACA
* ** * *
69149379 TGTTAGACCTTGTCTAGGACAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCGCGTCTGGGACATTGGCATCG--ATTTGATTTACA
*
69149422 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCGCGTCTGGGAC
69149442 GTTCGCATTG
Statistics
Matches: 83, Mismatches: 17, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
42 25 0.30
43 32 0.39
44 25 0.30
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCGCGTCTGGGACATTGGCATCGATTTGATTTACA
Found at i:69150038 original size:7 final size:7
Alignment explanation
Indices: 69150026--69150050 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
69150016 GGTTTGATTT
69150026 TGATATA
1 TGATATA
69150033 TGATATA
1 TGATATA
69150040 TGATATA
1 TGATATA
69150047 TGAT
1 TGAT
69150051 GCAAAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (7 bp):
TGATATA
Found at i:69161247 original size:40 final size:40
Alignment explanation
Indices: 69161191--69161393 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
69161181 CGGAATTCAA
* * *
69161191 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
69161231 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69161271 CCGGATAGAGTAACTCGCACGAATTCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69161311 CCGGATATAATAACTCGCACAATTTCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
69161350 CC-GAAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
69161390 CCGG
1 CCGG
69161394 TTATCATCCG
Statistics
Matches: 141, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
38 3 0.02
39 30 0.21
40 107 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69162104 original size:2 final size:2
Alignment explanation
Indices: 69162097--69162122 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
69162087 CATCATGTGC
69162097 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
69162123 GTGCAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69169475 original size:40 final size:40
Alignment explanation
Indices: 69169431--69169612 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
69169421 TATTCGCTCG
* *
69169431 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
69169471 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACG
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
69169511 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
69169551 ATTGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA
69169590 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
69169613 TTATCATCCG
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.26
40 94 0.73
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:69183794 original size:43 final size:43
Alignment explanation
Indices: 69183699--69183820 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
69183689 GGGGAGATGT
* * * *
69183699 GATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
* *
69183742 GATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGA
* * *
69183785 GATTTCGTGTAAGAGCC-TGTCTAGGACAGTGGCATC
1 GATTACGTGTAAGA-CCATGTCTGGGACATTGGCATC
69183821 AATATGTGAT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 62 0.93
44 5 0.07
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGA
Found at i:69198056 original size:28 final size:28
Alignment explanation
Indices: 69197987--69198087 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69197977 GACAAGATTG
* * * *
69197987 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
69198017 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69198045 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
69198074 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69198088 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69214110 original size:28 final size:28
Alignment explanation
Indices: 69214041--69214141 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69214031 GACAAGATTG
* * * *
69214041 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
69214071 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69214099 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
69214128 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69214142 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69219916 original size:35 final size:35
Alignment explanation
Indices: 69219877--69220072 Score: 216
Period size: 35 Copynumber: 5.6 Consensus size: 35
69219867 CATGATAAGA
* *
69219877 TGTGAAATGTAGGTATGGTATCATCGATACTCAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
69219912 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
** * * *
69219947 TGTGAAACATAGGTATGATATTAACCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
* * *
69219982 TATGAAATGTAGGTATGGTATTATCCATTCTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
** * * *
69220017 TAAGAAATATAGGTATGGCAT-TTCCCATA-TCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACT-GAGT
69220052 TGTGAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
69220073 TTCAATGAGG
Statistics
Matches: 137, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
34 2 0.01
35 135 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:69220065 original size:105 final size:105
Alignment explanation
Indices: 69219879--69220073 Score: 241
Period size: 105 Copynumber: 1.9 Consensus size: 105
69219869 TGATAAGATG
* ** * *
69219879 TGAAATGTAGGTATGGTATCATCGATACTCAGTTGTGAAACGTAGGTATGGTATCATCCATACTG
1 TGAAATGTAGGTATGGTATCATCCATACTCAGTTAAGAAACATAGGTATGGCATCATCCATACTG
69219944 AGTTGTGAAACATAGGTATGATATTAACCATACTGAGTTA
66 AGTTGTGAAACATAGGTATGATATTAACCATACTGAGTTA
* * * * *
69219984 TGAAATGTAGGTATGGTATTATCCATTCTGAGTTAAGAAATATAGGTATGGCAT-TTCCCATA-T
1 TGAAATGTAGGTATGGTATCATCCATACTCAGTTAAGAAACATAGGTATGGCATCAT-CCATACT
** *
69220047 CGAGTTGTGAAATGTAGGTATGGTATT
65 -GAGTTGTGAAACATAGGTATGATATT
69220074 TCAATGAGGA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
104 2 0.03
105 73 0.97
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (105 bp):
TGAAATGTAGGTATGGTATCATCCATACTCAGTTAAGAAACATAGGTATGGCATCATCCATACTG
AGTTGTGAAACATAGGTATGATATTAACCATACTGAGTTA
Found at i:69232583 original size:15 final size:15
Alignment explanation
Indices: 69232563--69232593 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
69232553 GCCGTGTGAC
69232563 AGACACAGGCTAGGG
1 AGACACAGGCTAGGG
69232578 AGACACAGGCTAGGG
1 AGACACAGGCTAGGG
69232593 A
1 A
69232594 CACGGGCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.39, T:0.06
Consensus pattern (15 bp):
AGACACAGGCTAGGG
Found at i:69239708 original size:20 final size:20
Alignment explanation
Indices: 69239683--69239727 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
69239673 AGGGACTAAA
*
69239683 ATGAAAAGTTAT-AAATTTT
1 ATGAAAAATTATGAAATTTT
69239702 GATGAAAAATTATGAAATTTT
1 -ATGAAAAATTATGAAATTTT
69239723 ATGAA
1 ATGAA
69239728 TACATGTGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTATGAAATTTT
Found at i:69240951 original size:239 final size:240
Alignment explanation
Indices: 69240528--69241012 Score: 911
Period size: 239 Copynumber: 2.0 Consensus size: 240
69240518 GTGTACTACT
*
69240528 TAAG-CATCCATAGAAATTCAATGATTTAACGGACATATAACTTTAGACATGGTATGAAAATCTT
1 TAAGTCATCCATAGAAATTCAATGATTTAACAGACATATAACTTTAGACATGGTATGAAAATCTT
69240592 GAGATGAAATAATAATGACTTGGAAGAATATTGCTTGATGAGCTCATCTATGTTACTTGATTGAT
66 GAGATGAAATAATAATGACTTGGAAGAATATTGCTTGATGAGCTCATCTATGTTACTTGATTGAT
69240657 ATGAAGATCTTGCTGACTAACATGTTTGGTTGAATGTATGTGATTAGGCAATTTAGCCAAACGGA
131 ATGAAGATCTTGCTGACTAACATGTTTGGTTGAATGTATGTGATTAGGCAATTTAGCCAAACGGA
69240722 TGGAAACATAACATTG-TATGCCTAGATTTAATAAGAAAGGTTGG
196 TGGAAACATAACATTGTTATGCCTAGATTTAATAAGAAAGGTTGG
*
69240766 TAAGTCATCCATCGAAATTCAATGATTTAACAGACATATAACTTTAGACATGGTATGAAAATCTT
1 TAAGTCATCCATAGAAATTCAATGATTTAACAGACATATAACTTTAGACATGGTATGAAAATCTT
*
69240831 GAGATTAAATAATAATGACTTGGAAGAATATTGCTTGATGAGCTCATCTATGTTACTTGATTGAT
66 GAGATGAAATAATAATGACTTGGAAGAATATTGCTTGATGAGCTCATCTATGTTACTTGATTGAT
69240896 ATGAAGATCTTGCTGACTAACATGTTTGGTTGAATGTATGTGATTAGGCAATTTAGCCAAACGGA
131 ATGAAGATCTTGCTGACTAACATGTTTGGTTGAATGTATGTGATTAGGCAATTTAGCCAAACGGA
69240961 TGGAAACATAACATTGTATTATGCCTAGATTTAATAAGAAAGGTTGG
196 TGGAAACATAACATTG--TTATGCCTAGATTTAATAAGAAAGGTTGG
69241008 TAAGT
1 TAAGT
69241013 TTCGTTTCCG
Statistics
Matches: 240, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
238 4 0.02
239 203 0.85
242 33 0.14
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (240 bp):
TAAGTCATCCATAGAAATTCAATGATTTAACAGACATATAACTTTAGACATGGTATGAAAATCTT
GAGATGAAATAATAATGACTTGGAAGAATATTGCTTGATGAGCTCATCTATGTTACTTGATTGAT
ATGAAGATCTTGCTGACTAACATGTTTGGTTGAATGTATGTGATTAGGCAATTTAGCCAAACGGA
TGGAAACATAACATTGTTATGCCTAGATTTAATAAGAAAGGTTGG
Found at i:69242545 original size:31 final size:31
Alignment explanation
Indices: 69242507--69242572 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
69242497 ATTTTTTTTT
69242507 TTTGCTATTGTCAGAAATTGCCACCATCAAG
1 TTTGCTATTGTCAGAAATTGCCACCATCAAG
69242538 TTTGCTATTGTCAGAAATTGCCACCATCAAG
1 TTTGCTATTGTCAGAAATTGCCACCATCAAG
69242569 TTTG
1 TTTG
69242573 ACAAAGTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (31 bp):
TTTGCTATTGTCAGAAATTGCCACCATCAAG
Found at i:69244371 original size:18 final size:18
Alignment explanation
Indices: 69244350--69244385 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
69244340 ATACCATCTT
69244350 AACACTAGCCTATACATG
1 AACACTAGCCTATACATG
69244368 AACACTAGCCTATACATG
1 AACACTAGCCTATACATG
69244386 CTAAATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.22
Consensus pattern (18 bp):
AACACTAGCCTATACATG
Found at i:69244455 original size:27 final size:26
Alignment explanation
Indices: 69244391--69244455 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
69244381 ACATGCTAAA
69244391 TTTCAATTTATTACTATCAGCCGAAT
1 TTTCAATTTATTACTATCAGCCGAAT
* *
69244417 TTTCCATATATTACTATCAGCTC-ATAT
1 TTTCAATTTATTACTATCAGC-CGA-AT
69244444 TTTCAATTTATT
1 TTTCAATTTATT
69244456 TCACATAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.29, C:0.18, G:0.05, T:0.48
Consensus pattern (26 bp):
TTTCAATTTATTACTATCAGCCGAAT
Found at i:69250849 original size:59 final size:58
Alignment explanation
Indices: 69250776--69250907 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
69250766 ATTTAAGCCC
* * * * *
69250776 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
69250835 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
69250893 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
69250908 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.41
59 36 0.57
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:69250865 original size:29 final size:29
Alignment explanation
Indices: 69250825--69250907 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
69250815 TGCCGTATTT
69250825 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69250854 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
69250883 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
69250908 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:69253156 original size:29 final size:29
Alignment explanation
Indices: 69253124--69253258 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
69253114 ATACCCTCCG
** * *
69253124 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
69253153 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69253182 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
69253211 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
69253240 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
69253259 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:69253191 original size:58 final size:58
Alignment explanation
Indices: 69253070--69253259 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
69253060 TACTCGATTT
* * * *** *
69253070 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
69253128 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
69253186 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
69253244 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
69253260 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:69258570 original size:29 final size:29
Alignment explanation
Indices: 69258528--69258611 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
69258518 TGCCGTATTT
**
69258528 TTTCCAGCTTGCACACTTAGTGCCAAATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
*
69258557 TTTCCAGCACGCACACTTAGTGCCATATA
1 TTTCCAGCACGCACACTTAGTGCCAAATA
69258586 TTTCCAGCACGCACACTTAGTGCCAA
1 TTTCCAGCACGCACACTTAGTGCCAA
69258612 TCTCGACACC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
TTTCCAGCACGCACACTTAGTGCCAAATA
Found at i:69262918 original size:40 final size:40
Alignment explanation
Indices: 69262813--69263027 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
69262803 CGGATGATAA
* *
69262813 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
69262853 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
69262892 CCGGGCTAAGTCCCGAAGGCATTTGT--GAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
69262930 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
69262970 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
69263010 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69263028 TACTTGGTTT
Statistics
Matches: 162, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
38 37 0.23
39 52 0.32
40 73 0.45
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69262968 original size:78 final size:78
Alignment explanation
Indices: 69262809--69262994 Score: 304
Period size: 78 Copynumber: 2.4 Consensus size: 78
69262799 TATCCGGATG
69262809 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGTGACTAATTCCGGGCTAAGTCCGAAGGCAT
69262874 TTGTGCGAGTTACT
65 TTGTGCGAGTTACT
* * *
69262888 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-AGTTACT-ATATCCGGGCTAGGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGACTAAT-TCCGGGCTAAGT-CCGAAGGCA
69262951 TTTGTGCGAGTTACT
64 TTTGTGCGAGTTACT
69262966 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
69262995 AGCGAGTAGC
Statistics
Matches: 101, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
76 2 0.02
77 17 0.17
78 52 0.51
79 30 0.30
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTGACTAATTCCGGGCTAAGTCCGAAGGCATT
TGTGCGAGTTACT
Found at i:69263023 original size:117 final size:117
Alignment explanation
Indices: 69262813--69263027 Score: 328
Period size: 117 Copynumber: 1.8 Consensus size: 117
69262803 CGGATGATAA
* * *
69262813 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCGAAGGCATTTGA
*
69262878 GCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGAGTTACTATAT
66 GCGAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGAGTTACTATAT
* *
69262930 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGT-CCGAAGGCATTT
69262994 GAGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
64 GAGCGAGTTA-CTATATCCGGGCTAAATCCCGAAGG
69263028 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
116 2 0.02
117 61 0.69
118 26 0.29
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (117 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCGAAGGCATTTGA
GCGAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGAGTTACTATAT
Found at i:69265802 original size:39 final size:40
Alignment explanation
Indices: 69265758--69265924 Score: 243
Period size: 40 Copynumber: 4.2 Consensus size: 40
69265748 ACCTTCGAAT
* *
69265758 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
69265797 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
69265837 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
69265876 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
69265916 TTAGCCCGG
1 TTAGCCCGG
69265925 TTATCATCCG
Statistics
Matches: 118, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 40 0.34
40 77 0.65
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:69265904 original size:79 final size:80
Alignment explanation
Indices: 69265758--69265924 Score: 243
Period size: 79 Copynumber: 2.1 Consensus size: 80
69265748 ACCTTCGAAT
* * * *
69265758 TTAG-CCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
69265822 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
*
69265837 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGC
1 TTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGC
69265899 ACAAATGCCTTCGGGAC
64 ACAAATGCCTTCGGGAC
69265916 TTAGCCCGG
1 TTAGCCCGG
69265925 TTATCATCCG
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
78 1 0.01
79 50 0.62
80 29 0.36
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC
AAATGCCTTCGGGAC
Found at i:69274223 original size:40 final size:40
Alignment explanation
Indices: 69274168--69274385 Score: 343
Period size: 40 Copynumber: 5.5 Consensus size: 40
69274158 CGGATGATAA
* *
69274168 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
69274208 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
69274248 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
69274288 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
69274328 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
69274368 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
69274386 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 150 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69276321 original size:48 final size:46
Alignment explanation
Indices: 69276220--69276580 Score: 174
Period size: 47 Copynumber: 7.7 Consensus size: 46
69276210 TTAATTGTGT
* * **
69276220 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCACATT--TTGAGA
1 GCTAGTGTAAGCCATGTCTGGGACATGGCATC-G--GCATTAGACGAGA
*
69276266 GCCAGTGTAAAGCCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGT-AAGCCATGTCTGGGACATGGCATCGGCATT-AGACGAGA
* * * *
69276314 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGTC-TCGAGATGTA-A
1 GCTAGTGTAAGCCATGTCTGGGACATGGCATC-GGCAT-TAGACG-AGA
* * * * *
69276360 GCAAGTGTAAGACATGTCTGGGACAT-GCATC-G-ATTACAAGATGT
1 GCTAGTGTAAGCCATGTCTGGGACATGGCATCGGCATTAGACGA-GA
* * * *
69276404 GTTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAG-CTA-T
1 GCTAGTGTAAG-CCATGTCTGGGACATGGCATCGGCA--T-TAGACGAGA
* * * * *
69276452 GTTAGTGTAAGACCACGTATGGGACATGGCATCGGCACGGATATG-TGAGA
1 GCTAGTGTAAG-CCATGTCTGGGACATGGCATCGGCA---TTA-GACGAGA
* * *
69276502 GTTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTA-ATGGATGA
1 GCTAGTGTAAG-CCATGTCTGGGACATGGCATCGGCATTAGA-CGA-GA
* *
69276549 GCTGGTGTAAGGCCGTGTCTGGGACATGGCAT
1 GCTAGTGTAA-GCCATGTCTGGGACATGGCAT
69276581 TGACATTATA
Statistics
Matches: 252, Mismatches: 38, Indels: 49
0.74 0.11 0.14
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 10 0.04
45 17 0.07
46 57 0.23
47 68 0.27
48 56 0.22
49 3 0.01
50 35 0.14
51 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGCCATGTCTGGGACATGGCATCGGCATTAGACGAGA
Found at i:69276370 original size:46 final size:46
Alignment explanation
Indices: 69276223--69276390 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
69276213 ATTGTGTGCT
* * *
69276223 AGTGTAAGACATGTCTGGGACATGCATCAGC-C-ACATTTTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTCGAGA-TGT-AGAGCA
* * * * *
69276269 AGTGTAAAGCCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGCT
1 AGTGT-AAGACATGTCTGGGACAT-GCATCAGC-TCGAGATGTAGAGCA
69276317 AGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATGTA-AGCA
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTCGAGATGTAGAGCA
69276363 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
69276391 GATTACAAGA
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
46 48 0.47
47 36 0.35
48 17 0.17
51 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTCGAGATGTAGAGCA
Found at i:69276402 original size:46 final size:46
Alignment explanation
Indices: 69276220--69276437 Score: 166
Period size: 46 Copynumber: 4.7 Consensus size: 46
69276210 TTAATTGTGT
* **
69276220 GCTAGTGTAAGACATGTCTGGGACATGCATC-AG-CCACATTTTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGAGTTCA-A-GATGAGA
* * * *
69276266 GCCAGTGTAAAGCCATGTCTGGGACATGGCATCG-GCATT-GAGACGAGA
1 GCTAGTGT-AAGACATGTCTGGGACAT-GCATCGAG--TTCAAGATGAGA
*
69276314 GCTAGTGTAAGACATGTCTGGGACATGCATC-AGTCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGAGT-TCAAGATG-AGA
* *
69276360 GCAAGTGTAAGACATGTCTGGGACATGCATCGA-TTACAAGAT--GT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGAGTT-CAAGATGAGA
* *
69276404 GTTAGTGTAAGACCATGTTTGGGACATGGCATCG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
69276438 GCACGTATAG
Statistics
Matches: 141, Mismatches: 16, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 61 0.43
47 36 0.26
48 17 0.12
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGAGTTCAAGATGAGA
Found at i:69283762 original size:12 final size:12
Alignment explanation
Indices: 69283745--69283775 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
69283735 TAGCACATTT
69283745 TATATTAAAGAG
1 TATATTAAAGAG
69283757 TATATTAAAGAG
1 TATATTAAAGAG
69283769 TATATTA
1 TATATTA
69283776 TGATAATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (12 bp):
TATATTAAAGAG
Found at i:69285699 original size:136 final size:137
Alignment explanation
Indices: 69285454--69285739 Score: 511
Period size: 136 Copynumber: 2.1 Consensus size: 137
69285444 TATTGGGCCT
** * *
69285454 AAGCCCATTCAGGTAACAGTGGTATTGGACCAGAGCCCTTTTTCAGATTACAATAAACTGGGTCT
1 AAGCCCATTTGGGTAACAGTGGTACTGGACCAGAGCCCTTTTTCAGATTACAATAAACTGGGCCT
69285519 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
66 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
69285584 CATATGC
131 CATATGC
* *
69285591 AAGCCCATTTGGGTAACAGTGGTACTGGACCAGAGCCC-TTTTCAGATTATAATAAATTGGGCCT
1 AAGCCCATTTGGGTAACAGTGGTACTGGACCAGAGCCCTTTTTCAGATTACAATAAACTGGGCCT
69285655 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
66 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
69285720 CATATGC
131 CATATGC
69285727 AAGCCCATTTGGG
1 AAGCCCATTTGGG
69285740 GAGACTACTC
Statistics
Matches: 143, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
136 108 0.76
137 35 0.24
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGACCAGAGCCCTTTTTCAGATTACAATAAACTGGGCCT
TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
CATATGC
Found at i:69287559 original size:26 final size:26
Alignment explanation
Indices: 69287530--69287633 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
69287520 ATTCCCATCT
*
69287530 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
69287556 TGGAACATTTACCCAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* * *
69287582 TAGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
69287608 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
69287634 ATTTGTACCA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:69289869 original size:9 final size:9
Alignment explanation
Indices: 69289857--69289892 Score: 72
Period size: 9 Copynumber: 4.0 Consensus size: 9
69289847 TAATTGAATT
69289857 GAATTATTC
1 GAATTATTC
69289866 GAATTATTC
1 GAATTATTC
69289875 GAATTATTC
1 GAATTATTC
69289884 GAATTATTC
1 GAATTATTC
69289893 AAGTCAACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (9 bp):
GAATTATTC
Found at i:69290120 original size:19 final size:19
Alignment explanation
Indices: 69290059--69290121 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
69290049 TTACAAACAA
* *
69290059 AAAAATCAAAATAACTTAC
1 AAAAATCAAAATAATTTAT
*
69290078 AAAAATTCAAGATAATTT-T
1 AAAAA-TCAAAATAATTTAT
*
69290097 TAAAATCCAAAAT-ATTTAT
1 AAAAAT-CAAAATAATTTAT
69290116 AAAAAT
1 AAAAAT
69290122 TTCAAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.14
19 20 0.57
20 10 0.29
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAATCAAAATAATTTAT
Found at i:69292142 original size:20 final size:20
Alignment explanation
Indices: 69292119--69292160 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
69292109 TTTTAAAAAA
*
69292119 CAAGTAAGGTTTTTAATGTC
1 CAAGTAAGGTTCTTAATGTC
69292139 CAAGTAAGGTTCTTAATGTC
1 CAAGTAAGGTTCTTAATGTC
69292159 CA
1 CA
69292161 GTTTCAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (20 bp):
CAAGTAAGGTTCTTAATGTC
Found at i:69293953 original size:56 final size:57
Alignment explanation
Indices: 69293817--69293987 Score: 191
Period size: 57 Copynumber: 3.0 Consensus size: 57
69293807 TCATTTTTCT
* * ** *
69293817 TTTCAGTTTGGAGAAAGCCATATTCATTTATAAATGATTCCATTTCTCCATTTTCAT
1 TTTCAGTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCAA
* * ** *
69293874 TTTCAGTTTGGAGAAAACTATAATCATTTCCAAATGTTTCTGTTTCTCTATTTT-AA
1 TTTCAGTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCAA
* * * *
69293930 TTTCATTTTGGAGAAAACCATAATTATTTCCAAATTATTTCCAATTTCTACATTTTCA
1 TTTCAGTTTGGAGAAAACCATAATCATTTCCAAATGA-TTCC-ATTTCTCCATTTTCA
69293988 CCATTTCTAT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
56 33 0.36
57 48 0.52
58 10 0.11
59 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (57 bp):
TTTCAGTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCAA
Found at i:69301956 original size:40 final size:40
Alignment explanation
Indices: 69301894--69302109 Score: 262
Period size: 40 Copynumber: 5.4 Consensus size: 40
69301884 GATGATAACG
*
69301894 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
* * *
69301934 GGGCTAAGTCCCAAAGGTATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
69301974 GGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATATCC
* **
69302014 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
* *
69302054 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATATCC
* *
69302094 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
69302110 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 16 0.10
40 141 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
Found at i:69307759 original size:30 final size:30
Alignment explanation
Indices: 69307723--69307783 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69307713 CATTTAATAC
*
69307723 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
69307753 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
69307783 A
1 A
69307784 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:69312236 original size:79 final size:82
Alignment explanation
Indices: 69312096--69312280 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
69312086 TCGAATGATG
* * *
69312096 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
69312160 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
69312176 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
69312238 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
69312256 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69312281 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:69312288 original size:40 final size:40
Alignment explanation
Indices: 69312097--69312288 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
69312087 CGAATGATGT
* * * * *
69312097 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
69312137 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
69312177 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
69312216 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
69312256 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
69312289 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:69312311 original size:79 final size:79
Alignment explanation
Indices: 69312096--69312313 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
69312086 TCGAATGATG
* * * * ** *
69312096 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
69312159 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
69312176 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
69312241 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
69312256 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
69312314 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:69313813 original size:2 final size:2
Alignment explanation
Indices: 69313806--69313840 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
69313796 TCAGCTATGT
69313806 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
69313841 TGAAATGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:69314541 original size:2 final size:2
Alignment explanation
Indices: 69314534--69314569 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
69314524 ATGTATTATG
*
69314534 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69314570 GTGAACGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69314670 original size:39 final size:39
Alignment explanation
Indices: 69314627--69314782 Score: 163
Period size: 39 Copynumber: 4.0 Consensus size: 39
69314617 GTGTGAGATA
*
69314627 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
** **
69314666 TATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAATGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * * *
69314705 TATATCCGGGCTAAAGTCCCGCAGGC-CTTGTGCGGGTAT
1 TATATCCGGGCT-AAGTCCCGAAGGCATTTGTGCTGGTGT
* * *
69314744 TATATCCGGGCTTAAAGTCCCGCATGC-TTTGTGGTGGTG
1 TATATCCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
69314783 ATTGGATTTG
Statistics
Matches: 97, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 63 0.65
40 34 0.35
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
Found at i:69314760 original size:40 final size:38
Alignment explanation
Indices: 69314594--69314776 Score: 154
Period size: 39 Copynumber: 4.7 Consensus size: 38
69314584 AGGATTTTAA
* *
69314594 CCGGGCTAAGACCCGCAGGCCTTGTGTGAG-ATATATAT
1 CCGGGCTAAGTCCCGCAGGCCTTGTGCGAGTAT-TATAT
* * * *
69314632 CCGGGCTAATTCCCGAAGGCATTTGTGCTG-GTGTTATAT
1 CCGGGCTAAGTCCCGCAGGC-CTTGTGC-GAGTATTATAT
* * * * * *
69314671 CCGGGCTAAGTCCCGAAGGCATTCATGCTAATGTTATAT
1 CCGGGCTAAGTCCCGCAGGCCTT-GTGCGAGTATTATAT
*
69314710 CCGGGCTAAAGTCCCGCAGGCCTTGTGCGGGTATTATAT
1 CCGGGCT-AAGTCCCGCAGGCCTTGTGCGAGTATTATAT
* *
69314749 CCGGGCTTAAAGTCCCGCATGCTTTGTG
1 CCGGGC-T-AAGTCCCGCAGGCCTTGTG
69314777 GTGGTGATTG
Statistics
Matches: 118, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 19 0.16
39 64 0.54
40 35 0.30
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGCAGGCCTTGTGCGAGTATTATAT
Found at i:69317197 original size:65 final size:65
Alignment explanation
Indices: 69317118--69317249 Score: 255
Period size: 65 Copynumber: 2.0 Consensus size: 65
69317108 TGTAGAGGGC
69317118 CCTGCTTCTCTATCATAAAACCTACCCCTGAGTAAGGCTACTGGGCCAAATATTACTTTAGGTAA
1 CCTGCTTCTCTATCATAAAACCTACCCCTGAGTAAGGCTACTGGGCCAAATATTACTTTAGGTAA
*
69317183 CCTGCTTCTCTATCATAAAACCTACCCTTGAGTAAGGCTACTGGGCCAAATATTACTTTAGGTAA
1 CCTGCTTCTCTATCATAAAACCTACCCCTGAGTAAGGCTACTGGGCCAAATATTACTTTAGGTAA
69317248 CC
1 CC
69317250 CTTCCAAATA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (65 bp):
CCTGCTTCTCTATCATAAAACCTACCCCTGAGTAAGGCTACTGGGCCAAATATTACTTTAGGTAA
Found at i:69323524 original size:13 final size:13
Alignment explanation
Indices: 69323506--69323532 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69323496 CTTTCAGCCC
69323506 CGTAACAAAAGAA
1 CGTAACAAAAGAA
69323519 CGTAACAAAAGAA
1 CGTAACAAAAGAA
69323532 C
1 C
69323533 ATAGATCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.19, G:0.15, T:0.07
Consensus pattern (13 bp):
CGTAACAAAAGAA
Found at i:69326818 original size:18 final size:18
Alignment explanation
Indices: 69326795--69326830 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
69326785 TACATGGTTA
69326795 CTGCTGCTTCAACCATGT
1 CTGCTGCTTCAACCATGT
69326813 CTGCTGCTTCAACCATGT
1 CTGCTGCTTCAACCATGT
69326831 TGGAAAAACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (18 bp):
CTGCTGCTTCAACCATGT
Found at i:69332422 original size:19 final size:18
Alignment explanation
Indices: 69332388--69332426 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
69332378 GGAAAAAGAA
69332388 AGTTTGAAGATTTTTTTT
1 AGTTTGAAGATTTTTTTT
69332406 AGTTTGAAGATTTTTTTT
1 AGTTTGAAGATTTTTTTT
69332424 AGT
1 AGT
69332427 ACATTTAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.18, T:0.59
Consensus pattern (18 bp):
AGTTTGAAGATTTTTTTT
Found at i:69338775 original size:19 final size:19
Alignment explanation
Indices: 69338751--69338788 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
69338741 GTATTCGATT
69338751 GAGGAATTCCCTTACTACG
1 GAGGAATTCCCTTACTACG
69338770 GAGGAATTCCCTTACTACG
1 GAGGAATTCCCTTACTACG
69338789 CGCATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (19 bp):
GAGGAATTCCCTTACTACG
Found at i:69346273 original size:584 final size:583
Alignment explanation
Indices: 69345144--69346311 Score: 2174
Period size: 584 Copynumber: 2.0 Consensus size: 583
69345134 AATGTATATA
*
69345144 TTAATATGTATAAAATATTTTAAAAAATATTGTACAAAATGTAAAACTAATAAGATAAAAGAAAT
1 TTAATATGTATAAAATATTTAAAAAAATATTGTACAAAATGTAAAACTAATAAGATAAAAGAAAT
*
69345209 CTCAAAATAATTGTACAAATGAAAACAAACAAAATCATTAAAATGAATTAACACATATAAAAATA
66 CTCAAAATAATTGTACAAATGAAAAAAAACAAAATCATTAAAATGAATTAACACATATAAAAATA
*
69345274 TTAAATGTATTTTAAATTAGCAAATTATACAAATGAAAGACCAAATTAAGATTGAATCCAAAATA
131 TTAAATGTATTTTAAATTAACAAATTATACAAATGAAAGACCAAATTAAGATTGAATCCAAAATA
69345339 AGAAGAATAATTTACAAATGAAATAATCGTAAATAAGATCAATGCGCAATGCGCGTAAATGTATG
196 AGAAGAATAATTTACAAATGAAATAATCGTAAATAAGATCAATGCGCAATGCGCGTAAATGTATG
69345404 GGCACAAGAATTGCAAATATCCCTGAGCCCAAAACGCAGCACTGTATCACGGACTAAAATGAAAA
261 GGCACAAGAATTGCAAATATCCCTGAGCCCAAAACGCAGCACTGTATCACGGACTAAAATGAAAA
69345469 CACGCATGAACTAAAGAGCCAAATTAAAAAACAAGGCAAAACCAATAATACGCAATTGAATACTC
326 CACGCATGAACTAAAGAGCCAAATTAAAAAACAAGGCAAAACCAATAATACGCAATTGAATACTC
*
69345534 GCGCGTAAGGAAGGATCCAGCATGCAATTTCTCCATTCAAACAAAAGGGCGTGGATCCGACTTGT
391 GCGCGTAAGGAAGGATCCAGCACGCAATTTCTCCATTCAAACAAAAGGGCGTGGATCCGACTTGT
69345599 TAATCGGGCCAACACGCGGATCTTTATCCCTTTGAACGGCGCCATTTTATTAATAGGTTATTTAA
456 TAATCGGGCCAACACGCGGATCTTTATCCCTTTGAACGGCGCCATTTTATTAATAGGTTATTTAA
*
69345664 AACCTTTTTTTTCCTATTTCCTTTTCCAAATACAGCCAACATTTTAACCAAAATTTACAGCCC
521 AACCTTTTTTTTCCTATTTCCTTTTCCAAACACAGCCAACATTTTAACCAAAATTTACAGCCC
69345727 TTAATATGTATAAAATATTTGAAAAAAATATTGTACAAAATGTAAAACTAATAAGATAAAAGAAA
1 TTAATATGTATAAAATATTT-AAAAAAATATTGTACAAAATGTAAAACTAATAAGATAAAAGAAA
* *
69345792 TCTCAAAATAATTGTACAAATGAAAAAAAACAAAATCATTAAAATGGATTAACACATATAACAAT
65 TCTCAAAATAATTGTACAAATGAAAAAAAACAAAATCATTAAAATGAATTAACACATATAAAAAT
* *
69345857 ATTCAATGTATTTTAAATTAACAGATTATACAAATGAAAGACCAAATTAAGATTGAATCCAAAAT
130 ATTAAATGTATTTTAAATTAACAAATTATACAAATGAAAGACCAAATTAAGATTGAATCCAAAAT
*
69345922 AAGAAGAATAATTTACAAATGAAATAATCGTAAATAAGATCAATGTGCAATGCGCGTAAATGTAT
195 AAGAAGAATAATTTACAAATGAAATAATCGTAAATAAGATCAATGCGCAATGCGCGTAAATGTAT
* * * * *
69345987 GGGCACTAGAATTGTAAATATCCCTGAGGCCGAAACGCAGCACTGTATCATGGACTAAAATGAAA
260 GGGCACAAGAATTGCAAATATCCCTGAGCCCAAAACGCAGCACTGTATCACGGACTAAAATGAAA
69346052 ACACGCATGAACTAAAGAGCCAAATTAAAAAACAAGGCAAAACCAATAATACGCAATTGAATACT
325 ACACGCATGAACTAAAGAGCCAAATTAAAAAACAAGGCAAAACCAATAATACGCAATTGAATACT
* *
69346117 CGTGCGTAAGGAAGGATCCAGCGCGCAATTTCTCCATTCAAACAAAAGGGCGTGGATCCGACTTG
390 CGCGCGTAAGGAAGGATCCAGCACGCAATTTCTCCATTCAAACAAAAGGGCGTGGATCCGACTTG
69346182 TTAATCGGGCCAACACGCGGATCTTTATCCCTTTGAACGGCGCCATTTTATTAATAGGTTATTTA
455 TTAATCGGGCCAACACGCGGATCTTTATCCCTTTGAACGGCGCCATTTTATTAATAGGTTATTTA
69346247 AAACCTTTTTTTTCCTATTTCCTTTTCCAAACACAGCCAACATTTTAACCAAAATTTACAGCCC
520 AAACCTTTTTTTTCCTATTTCCTTTTCCAAACACAGCCAACATTTTAACCAAAATTTACAGCCC
69346311 T
1 T
69346312 AAAATCAATT
Statistics
Matches: 567, Mismatches: 17, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
583 20 0.04
584 547 0.96
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (583 bp):
TTAATATGTATAAAATATTTAAAAAAATATTGTACAAAATGTAAAACTAATAAGATAAAAGAAAT
CTCAAAATAATTGTACAAATGAAAAAAAACAAAATCATTAAAATGAATTAACACATATAAAAATA
TTAAATGTATTTTAAATTAACAAATTATACAAATGAAAGACCAAATTAAGATTGAATCCAAAATA
AGAAGAATAATTTACAAATGAAATAATCGTAAATAAGATCAATGCGCAATGCGCGTAAATGTATG
GGCACAAGAATTGCAAATATCCCTGAGCCCAAAACGCAGCACTGTATCACGGACTAAAATGAAAA
CACGCATGAACTAAAGAGCCAAATTAAAAAACAAGGCAAAACCAATAATACGCAATTGAATACTC
GCGCGTAAGGAAGGATCCAGCACGCAATTTCTCCATTCAAACAAAAGGGCGTGGATCCGACTTGT
TAATCGGGCCAACACGCGGATCTTTATCCCTTTGAACGGCGCCATTTTATTAATAGGTTATTTAA
AACCTTTTTTTTCCTATTTCCTTTTCCAAACACAGCCAACATTTTAACCAAAATTTACAGCCC
Found at i:69347017 original size:27 final size:27
Alignment explanation
Indices: 69346955--69347020 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
69346945 TCTTTGAGTC
* *
69346955 CAATTGGGTCTCGCGTTTGGGTTATTA
1 CAATTGGGTTTAGCGTTTGGGTTATTA
* * *
69346982 GAATCGGGTTTAGGGTTTGGGTTTATT-
1 CAATTGGGTTTAGCGTTTGGG-TTATTA
69347009 CAATTGGGTTTA
1 CAATTGGGTTTA
69347021 AAAAAATGTA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.17, C:0.09, G:0.32, T:0.42
Consensus pattern (27 bp):
CAATTGGGTTTAGCGTTTGGGTTATTA
Found at i:69355663 original size:11 final size:11
Alignment explanation
Indices: 69355647--69355685 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
69355637 AACATTTTCA
69355647 TAATAAAATAT
1 TAATAAAATAT
69355658 TAATAAAA-AT
1 TAATAAAATAT
69355668 CTAATTAAAATAT
1 -TAA-TAAAATAT
69355681 TAATA
1 TAATA
69355686 TTATAACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 8 0.32
13 2 0.08
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:69357178 original size:15 final size:16
Alignment explanation
Indices: 69357155--69357187 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
69357145 CATTATTTAA
*
69357155 TATTTCTAG-TAAAAT
1 TATTCCTAGTTAAAAT
69357170 TATTCCTAGTTAAAAT
1 TATTCCTAGTTAAAAT
69357186 TA
1 TA
69357188 ATATGAAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45
Consensus pattern (16 bp):
TATTCCTAGTTAAAAT
Found at i:69358461 original size:2 final size:2
Alignment explanation
Indices: 69358454--69358487 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
69358444 ACCAAAATTC
69358454 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69358488 TCAGATACAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69369295 original size:14 final size:14
Alignment explanation
Indices: 69369276--69369331 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
69369266 TATTAATTCA
69369276 TATTTTAATAATAT
1 TATTTTAATAATAT
*
69369290 TATTTTATTAAT-T
1 TATTTTAATAATAT
*
69369303 TTTATTTAATAATAAT
1 TAT-TTTAATAAT-AT
*
69369319 TATGTTAA-AATAT
1 TATTTTAATAATAT
69369332 GATTAAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 5 0.15
14 22 0.65
15 4 0.12
16 3 0.09
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (14 bp):
TATTTTAATAATAT
Found at i:69369309 original size:15 final size:15
Alignment explanation
Indices: 69369263--69369309 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
69369253 ATATTATGAT
69369263 TTTTATTAATTCA-TA
1 TTTTATTAATT-ATTA
*
69369278 TTTTAATAA-TATTA
1 TTTTATTAATTATTA
*
69369292 TTTTATTAATTTTTA
1 TTTTATTAATTATTA
69369307 TTT
1 TTT
69369310 AATAATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 1 0.04
14 11 0.41
15 15 0.56
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTATTAATTATTA
Found at i:69369320 original size:29 final size:29
Alignment explanation
Indices: 69369246--69369321 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
69369236 TATTTTTATA
* *
69369246 ATATTTT-ATATTATGATTTTTATTAATTC
1 ATATTTTAATAATATTA-TTTTATTAATTC
*
69369275 ATATTTTAATAATATTATTTTATTAATTT
1 ATATTTTAATAATATTATTTTATTAATTC
*
69369304 TTA-TTTAATAATAATTAT
1 ATATTTTAATAAT-ATTAT
69369322 GTTAAAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 9 0.22
29 25 0.61
30 7 0.17
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (29 bp):
ATATTTTAATAATATTATTTTATTAATTC
Found at i:69372615 original size:30 final size:30
Alignment explanation
Indices: 69372581--69372637 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
69372571 TTTTCACATA
* *
69372581 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
1 TAGGGGCAAAATGGTCATTTTACCAAAGCC
69372611 TAGGGGCAAAATGGTCATTTTACCAAA
1 TAGGGGCAAAATGGTCATTTTACCAAA
69372638 AATGTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGCC
Found at i:69373093 original size:47 final size:46
Alignment explanation
Indices: 69373030--69373344 Score: 180
Period size: 47 Copynumber: 6.7 Consensus size: 46
69373020 AGACAAGGGT
* *
69373030 TAGTGTAAGACGTGTCTGGGACATGCATCAGCCACATTACGATAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGATAGC
* * * *
69373076 TAGTGTAAGAACATGTCTAGGACATGGCATCGGCGTAGA-GACGAGT-GC
1 TAGTGTAAG-ACATGTCTGGGACAT-GCATCAGC-CACATGACGA-TAGC
* * ** * * *
69373124 CAGTGTAAGACGTGTCTGGGACATGCATTGGCCTCAATGATGGTAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGACGATAGC
* * * * *
69373171 CAGTGTAAGACGTGTCTGGGACATGCATCTGCTA-A-GCTTCG-TA-C
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCACATG--ACGATAGC
* * *
69373215 TAATGTAAGACATGCCT-GGACATGCATCAG-CACTTAT-ACATGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--ATGAC--GATAGC
* * * * *
69373262 TAGTGTAAAACAATGTCTGGGACATGGCATCGGCCTCGACGAAGATAGC
1 TAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCCAC-ATGACGATAGC
*
69373311 TAGTGTAAGACCATGTTTGGGACATGGCATCAGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
69373345 AACTTAACCC
Statistics
Matches: 205, Mismatches: 41, Indels: 43
0.71 0.14 0.15
Matches are distributed among these distances:
42 1 0.00
43 13 0.06
44 15 0.07
45 5 0.02
46 20 0.10
47 71 0.35
48 26 0.13
49 43 0.21
50 8 0.04
51 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGATAGC
Found at i:69376023 original size:7 final size:7
Alignment explanation
Indices: 69376011--69376088 Score: 75
Period size: 7 Copynumber: 10.9 Consensus size: 7
69376001 ACCAAGTATG
69376011 TAGGGTT
1 TAGGGTT
69376018 TAGGGTT
1 TAGGGTT
*
69376025 TAGGCTT
1 TAGGGTT
* *
69376032 TAAGATT
1 TAGGGTT
*
69376039 TAAGGTTT
1 T-AGGGTT
*
69376047 TAAGGTT
1 TAGGGTT
*
69376054 TAAGGTT
1 TAGGGTT
69376061 TAGGGTT
1 TAGGGTT
69376068 TAGGGTTT
1 TAGGG-TT
*
69376076 TAGAGTT
1 TAGGGTT
69376083 TAGGGT
1 TAGGGT
69376089 AGGGGTCATT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
7 48 0.81
8 11 0.19
ACGTcount: A:0.22, C:0.01, G:0.33, T:0.44
Consensus pattern (7 bp):
TAGGGTT
Found at i:69376077 original size:15 final size:15
Alignment explanation
Indices: 69376011--69376088 Score: 72
Period size: 15 Copynumber: 5.4 Consensus size: 15
69376001 ACCAAGTATG
69376011 TAGGG-TTTAGGGTT
1 TAGGGTTTTAGGGTT
* * *
69376025 TA-GGCTTTAAGATT
1 TAGGGTTTTAGGGTT
* *
69376039 TAAGGTTTTAAGGTT
1 TAGGGTTTTAGGGTT
*
69376054 TAAGG-TTTAGGGTT
1 TAGGGTTTTAGGGTT
*
69376068 TAGGGTTTTAGAGTT
1 TAGGGTTTTAGGGTT
69376083 TAGGGT
1 TAGGGT
69376089 AGGGGTCATT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
13 2 0.04
14 23 0.43
15 29 0.54
ACGTcount: A:0.22, C:0.01, G:0.33, T:0.44
Consensus pattern (15 bp):
TAGGGTTTTAGGGTT
Found at i:69376077 original size:22 final size:20
Alignment explanation
Indices: 69376014--69376088 Score: 78
Period size: 22 Copynumber: 3.5 Consensus size: 20
69376004 AAGTATGTAG
69376014 GGTTTAGGGTTTAGGCTTTAA
1 GGTTTAGGGTTTAGG-TTTAA
* *
69376035 GATTTAAGGTTTTAAGGTTTAA
1 GGTTT-AGGGTTT-AGGTTTAA
*
69376057 GGTTTAGGGTTTAGGGTTTTA
1 GGTTTAGGGTTTA-GGTTTAA
69376078 GAGTTTAGGGT
1 G-GTTTAGGGT
69376089 AGGGGTCATT
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.02
21 17 0.38
22 24 0.53
23 3 0.07
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.44
Consensus pattern (20 bp):
GGTTTAGGGTTTAGGTTTAA
Found at i:69380056 original size:30 final size:30
Alignment explanation
Indices: 69380022--69380109 Score: 158
Period size: 30 Copynumber: 2.9 Consensus size: 30
69380012 TTTTCGAATA
69380022 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
1 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
69380052 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
1 TAGGGGTAAAATGGTCATTTTGCCAAAGCC
* *
69380082 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGTAAAATGGTCATTTTGCCAAAG
69380110 ATGTGAAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGGTAAAATGGTCATTTTGCCAAAGCC
Found at i:69380656 original size:94 final size:94
Alignment explanation
Indices: 69380450--69380670 Score: 257
Period size: 94 Copynumber: 2.4 Consensus size: 94
69380440 GTTATGTGAG
* *
69380450 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACGTA
* *
69380515 TCTAGGACATGCATCAGCCACATTACGAT
66 CCTAGGACATGCATCAGCCACATGACGAT
* * * * * * * * *
69380544 AACTAGTGTAAGACCATGTCTGAGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGATGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACGTA
* * * *
69380609 CCTGGGACATGCATCAGCCTCAATGATGGT
66 CCTAGGACATGCATCAGCCAC-ATGACGAT
*
69380639 AGCCAGTCTAAGA-CATGTCTGGGACAT-GCATC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
69380671 TGCTAAGCTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
93 5 0.05
94 85 0.81
95 15 0.14
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGAGGGCCAGTGTAAGACGTA
CCTAGGACATGCATCAGCCACATGACGAT
Found at i:69382978 original size:47 final size:46
Alignment explanation
Indices: 69382916--69383039 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 46
69382906 CTGGTAGCCG
69382916 ATGCATGTCCCAGACATGTCTTACACTAGCACTCGTC-TCAATGT-CA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCAT-AATGTGCA
* * *
69382962 ATGCCATGTCCAAGACATAGTCTTATACT-G-GCTCTCATAATGTGGCCA
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTCATAATGT-G-CA
69383010 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
69383040 TCACAATAAC
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
45 7 0.11
46 16 0.25
47 28 0.43
48 14 0.22
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACTCTCATAATGTGCA
Found at i:69382978 original size:92 final size:93
Alignment explanation
Indices: 69382870--69383039 Score: 227
Period size: 94 Copynumber: 1.8 Consensus size: 93
69382860 ATCTGTGCCG
* * *
69382870 ATGCCGTGTCCCAGACATAGACTTACACTGACACATC-T-GGTAGCCGATGCATGTCCCAGACAT
1 ATGCCATGTCCAAGACATAGACTTACACTGACAC-TCATAGGTAGCCAATGCATGTCCCAGACAT
69382933 GTCTTACACTAGCACTCGTCTCAATGTCA
65 GTCTTACACTAGCACTCGTCTCAATGTCA
* * * * * *
69382962 ATGCCATGTCCAAGACATAGTCTTATACTGGCTCTCATAATGTGGCCAATGCATGTCCCAGACAT
1 ATGCCATGTCCAAGACATAGACTTACACTGACACTCAT-AGGTAGCCAATGCATGTCCCAGACAT
69383027 GTCTTACACTAGC
65 GTCTTACACTAGC
69383040 TCACAATAAC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
91 2 0.03
92 29 0.44
94 35 0.53
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (93 bp):
ATGCCATGTCCAAGACATAGACTTACACTGACACTCATAGGTAGCCAATGCATGTCCCAGACATG
TCTTACACTAGCACTCGTCTCAATGTCA
Found at i:69386198 original size:34 final size:34
Alignment explanation
Indices: 69386158--69386235 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
69386148 ACAAACATAC
69386158 AAAGTAATAATTAAATAATGCATGATATACAAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAA
*
69386192 AAAGTAATAATTAAATAATGTATGATATACAAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAA
69386226 AAGAGTAATA
1 AA-AGTAATA
69386236 CAATATCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.59, C:0.04, G:0.10, T:0.27
Consensus pattern (34 bp):
AAAGTAATAATTAAATAATGCATGATATACAAAA
Found at i:69386454 original size:24 final size:24
Alignment explanation
Indices: 69386408--69386455 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
69386398 CTATACAATA
*
69386408 TATAAAACATGATAACAAAATATT
1 TATAAAAAATGATAACAAAATATT
*
69386432 TATAAAAGAATGATAA-AATATATT
1 TATAAAA-AATGATAACAAAATATT
69386456 GGGTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
TATAAAAAATGATAACAAAATATT
Found at i:69386737 original size:30 final size:30
Alignment explanation
Indices: 69386696--69386756 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
69386686 AACATATATA
*
69386696 AAAAAATAATAAGTAATATAGAATAAAAAT
1 AAAAAATAATAAATAATATAGAATAAAAAT
* ** *
69386726 AAAATATAATAAATGTTATATAATAAAAAT
1 AAAAAATAATAAATAATATAGAATAAAAAT
69386756 A
1 A
69386757 TAATTTAGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (30 bp):
AAAAAATAATAAATAATATAGAATAAAAAT
Found at i:69389330 original size:209 final size:210
Alignment explanation
Indices: 69388957--69389391 Score: 635
Period size: 209 Copynumber: 2.1 Consensus size: 210
69388947 GAATACCAAA
*** *
69388957 TCATCTTGGATCTTGCTTCAGTC-TAATTGTCTGAAGGTCAGATCTGCATGTATCTACTCCCCAT
1 TCATCTTGGATC-TGCTTCAG-CGTAAACATCTGAAGGTAAGATCTGCATGTATCTACTCCCCAT
* * * * *
69389021 TGAATGTGGAGATGCCAGAATTCGATTTGTTCTTTGACAATACAGAGACGACTAATCATCTTAGA
64 TCAAAGTGGAAATGCCAGAATTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGA
69389086 TTTGCTTCATCATAAACACGCGAAAGCCAAATCAGCTATATCTTCAATCTGCTCCCCACCGAATA
129 TTTGCTTCATCATAAACACGCGAAAGCCAAATCAGCTATATCTTCAATCTGCTCCCCACCGAATA
69389151 CAGAGAGATAAGATCTG
194 CAGAGAGATAAGATCTG
* *
69389168 TCATCTT-GATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTAC-CTTCCA-
1 TCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGC-ATGTATCTACTC-CCCAT
*
69389230 TCAAAGTGGAAATGCCAGAGTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGA
64 TCAAAGTGGAAATGCCAGAATTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGA
* ** * * *
69389295 TTTGTTTCATTGTAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGCTCCCCGCCGAATA
129 TTTGCTTCATCATAAACACGCGAAAGCCAAATCAGCTATATCTTCAATCTGCTCCCCACCGAATA
*
69389360 CAGAGAGATAAGATTTG
194 CAGAGAGATAAGATCTG
69389377 TCATCTTGGATCTGC
1 TCATCTTGGATCTGC
69389392 CCCGATGAAA
Statistics
Matches: 201, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
208 1 0.00
209 170 0.85
210 23 0.11
211 7 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (210 bp):
TCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCATGTATCTACTCCCCATTC
AAAGTGGAAATGCCAGAATTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATT
TGCTTCATCATAAACACGCGAAAGCCAAATCAGCTATATCTTCAATCTGCTCCCCACCGAATACA
GAGAGATAAGATCTG
Found at i:69391502 original size:17 final size:18
Alignment explanation
Indices: 69391449--69391555 Score: 146
Period size: 17 Copynumber: 5.9 Consensus size: 18
69391439 AATCATATCT
*
69391449 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
69391468 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
69391486 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
69391503 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
*
69391521 TCTAAGACTG-TATCATA
1 TCTAAGATTGCTATCATA
69391538 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
69391556 TGAAGATTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
17 31 0.40
18 31 0.40
19 16 0.21
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:69391507 original size:35 final size:35
Alignment explanation
Indices: 69391449--69391555 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
69391439 AATCATATCT
69391449 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
69391486 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
69391521 TCTAAGACTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
69391556 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:69392156 original size:83 final size:83
Alignment explanation
Indices: 69391936--69392288 Score: 625
Period size: 83 Copynumber: 4.2 Consensus size: 83
69391926 TTCGATTTGT
* * *
69391936 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
69392001 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
*
69392019 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCG
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
69392084 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
*
69392103 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
69392168 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
69392186 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTTCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
69392251 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
69392269 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
69392289 GATCTGCTTC
Statistics
Matches: 261, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
83 182 0.70
84 79 0.30
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:69392689 original size:119 final size:119
Alignment explanation
Indices: 69392212--69392686 Score: 817
Period size: 119 Copynumber: 4.0 Consensus size: 119
69392202 CTTGAGTCTG
* * * * * * *
69392212 TTTGAGAACATTTGAGAGTCATATCTTCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
69392277 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
69392331 TTTGAGAACGTCTGAGAGTCAAATTTGCTATGTCCTCGATTTG-TCTCTTGTAAACACAAGAATA
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTC-CTTGTAAACACAAGAATG
*
69392395 CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATA
65 CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
69392450 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
69392515 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
69392569 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
*
69392634 CAAATCATCTTGGATCTGCTTCAGTATAAATATCTGAAGGTTAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
69392687 CTTCAATCTG
Statistics
Matches: 338, Mismatches: 16, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
118 2 0.01
119 334 0.99
120 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:69392726 original size:44 final size:44
Alignment explanation
Indices: 69392678--69392856 Score: 204
Period size: 44 Copynumber: 4.1 Consensus size: 44
69392668 TGAAGGTTAG
69392678 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
69392722 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
69392764 ATGCTGAAATCTTCAATCTGCTTCGC-AGAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCAATCTG-TTCCCTATAAACACAGGGATGCCAA
* * *
69392809 ATCTACTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
69392853 ATCT
1 ATCT
69392857 TGTTTCTTTG
Statistics
Matches: 110, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
42 2 0.02
43 31 0.28
44 75 0.68
45 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:69392799 original size:87 final size:87
Alignment explanation
Indices: 69392685--69392851 Score: 221
Period size: 87 Copynumber: 1.9 Consensus size: 87
69392675 TAGATCTGCT
* * *
69392685 ATCTTCAATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA-CTTGTTCCCTAT
1 ATCTTCAATCTGTTCCCTAGAAACACAGGAATGCCAAATCTACTATCTTCAATC-TGTTCCCTAT
69392749 AAACACAGGGATGCCATGCTGAA
65 AAACACAGGGATGCCATGCTGAA
* * * * *
69392772 ATCTTCAATCTGCTTCGC-AGAAGCACAGGAATGTCAGATCTACTATCTTCGATCTGTTCCCTAT
1 ATCTTCAATCTG-TTCCCTAGAAACACAGGAATGCCAAATCTACTATCTTCAATCTGTTCCCTAT
*
69392836 AAACATAGGGATGCCA
65 AAACACAGGGATGCCA
69392852 AATCTTGTTT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
87 64 0.93
88 5 0.07
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (87 bp):
ATCTTCAATCTGTTCCCTAGAAACACAGGAATGCCAAATCTACTATCTTCAATCTGTTCCCTATA
AACACAGGGATGCCATGCTGAA
Found at i:69393746 original size:21 final size:22
Alignment explanation
Indices: 69393722--69393777 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
69393712 GGCCTCTCTA
69393722 TTTTTCTTTTTTCTCTT-TATT
1 TTTTTCTTTTTTCTCTTCTATT
* *
69393743 TTTTTCTCTTTTTCTTTTCTTTT
1 TTTTTCT-TTTTTCTCTTCTATT
69393766 TTTTTCTTTTTT
1 TTTTTCTTTTTT
69393778 TTTTTGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 7 0.23
22 14 0.45
23 10 0.32
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTCTTTTTTCTCTTCTATT
Found at i:69393747 original size:14 final size:13
Alignment explanation
Indices: 69393723--69393782 Score: 65
Period size: 12 Copynumber: 4.8 Consensus size: 13
69393713 GCCTCTCTAT
69393723 TTTTCTTTTTTCTC
1 TTTT-TTTTTTCTC
69393737 TTTATTTTTTTCTC
1 TTT-TTTTTTTCTC
*
69393751 -TTTTTCTTT-TC
1 TTTTTTTTTTCTC
69393762 -TTTTTTTTTCT-
1 TTTTTTTTTTCTC
69393773 TTTTTTTTTT
1 TTTTTTTTTT
69393783 GAAATAGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
11 10 0.24
12 16 0.39
13 2 0.05
14 12 0.29
15 1 0.02
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTTCTC
Found at i:69393781 original size:21 final size:21
Alignment explanation
Indices: 69393722--69393781 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
69393712 GGCCTCTCTA
69393722 TTTTTCTTTTTTCTCTTTATTTT
1 TTTTTCTTTTTT-T-TTTATTTT
* * *
69393745 TTTCTCTTTTTCTTTTCTTTT
1 TTTTTCTTTTTTTTTTATTTT
69393766 TTTTTCTTTTTTTTTT
1 TTTTTCTTTTTTTTTT
69393782 TGAAATAGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 21 0.66
22 1 0.03
23 10 0.31
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTCTTTTTTTTTTATTTT
Found at i:69396289 original size:2 final size:2
Alignment explanation
Indices: 69396282--69396312 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
69396272 GTGACCCTGT
69396282 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
69396313 TTCTTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:69399645 original size:17 final size:18
Alignment explanation
Indices: 69399592--69399698 Score: 155
Period size: 17 Copynumber: 5.9 Consensus size: 18
69399582 AATCATATCT
*
69399592 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
69399611 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
69399629 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
69399646 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
69399664 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
69399681 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
69399699 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 32 0.40
18 32 0.40
19 16 0.20
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:69399650 original size:35 final size:35
Alignment explanation
Indices: 69399592--69399698 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
69399582 AATCATATCT
69399592 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
69399629 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
69399664 TCTAAGATTGTATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
69399699 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 54 0.78
36 5 0.07
37 10 0.14
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:69411166 original size:34 final size:34
Alignment explanation
Indices: 69411126--69411203 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
69411116 ATAAACATAC
69411126 AAAGTAATAATTAAATAATGCATGATATACAAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAA
*
69411160 AAAGTAATAATTAAATAATGTATGATATACAAAA
1 AAAGTAATAATTAAATAATGCATGATATACAAAA
69411194 AAGAGTAATA
1 AA-AGTAATA
69411204 CAATATCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 35 0.83
35 7 0.17
ACGTcount: A:0.59, C:0.04, G:0.10, T:0.27
Consensus pattern (34 bp):
AAAGTAATAATTAAATAATGCATGATATACAAAA
Found at i:69411432 original size:24 final size:24
Alignment explanation
Indices: 69411386--69411433 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
69411376 CTATACAATA
*
69411386 TATAAAACATGATAACAAAATATT
1 TATAAAAAATGATAACAAAATATT
*
69411410 TATAAAAGAATGATAA-AATATATT
1 TATAAAA-AATGATAACAAAATATT
69411434 GGGTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
TATAAAAAATGATAACAAAATATT
Done.