Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 245 of 427
Found at i:69714947 original size:29 final size:28
Alignment explanation
Indices: 69714899--69714953 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
69714889 GCAAGATTTA
69714899 CTGATTTGGCTTCAGACCATGCATATCGG
1 CTGATTTGGCTTCAGACCATG-ATATCGG
* *
69714928 CTGATTTGGCTTCGGTCCATGATATC
1 CTGATTTGGCTTCAGACCATGATATC
69714954 AGAATTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (28 bp):
CTGATTTGGCTTCAGACCATGATATCGG
Found at i:69718368 original size:38 final size:37
Alignment explanation
Indices: 69718295--69718368 Score: 85
Period size: 38 Copynumber: 2.0 Consensus size: 37
69718285 AAATCAGACA
* * ** *
69718295 AGTATAGTTTGGTCCTAAGCCCATTTCAGTGGCAGTC
1 AGTATAGTGTGGGCCTAAGCCCATAGCAGTAGCAGTC
*
69718332 AGTATCAGTGTGGGCCTTAGCCCATAGCAGTAGCAGT
1 AGTAT-AGTGTGGGCCTAAGCCCATAGCAGTAGCAGT
69718369 ATCAATGTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
37 5 0.17
38 25 0.83
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (37 bp):
AGTATAGTGTGGGCCTAAGCCCATAGCAGTAGCAGTC
Found at i:69723262 original size:40 final size:40
Alignment explanation
Indices: 69723203--69723410 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
69723193 TGAATGATAC
* * *
69723203 CCGGGCGAAGTCCCGAAGGCATTTATGATAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * *
69723243 CCGGGCTAAGTCCCAAAGGCATTTATGCTAGTTATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
** *
69723283 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTATAT
* * * ** *
69723323 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * * * *
69723363 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
69723403 CC-GGCTAA
1 CCGGGCTAA
69723411 ATTCGAAGAA
Statistics
Matches: 140, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 6 0.04
40 133 0.95
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:69730975 original size:40 final size:40
Alignment explanation
Indices: 69730920--69731127 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
69730910 TGGATGATAC
* *
69730920 CCGGGCGAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
*
69730960 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* *
69731000 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTATAT
* * * ** *
69731040 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * * * * *
69731080 CTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
69731120 CC-GGCTAA
1 CCGGGCTAA
69731128 ATTCCAAAGA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 135 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:69737297 original size:2 final size:2
Alignment explanation
Indices: 69737290--69737325 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
69737280 TTTAAAAGGG
69737290 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
69737326 TATATATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:69739156 original size:23 final size:23
Alignment explanation
Indices: 69739130--69739177 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
69739120 AAAACCAAAT
69739130 ACAAGACATATTTGAATCAATAA
1 ACAAGACATATTTGAATCAATAA
69739153 ACAAGACATATTTGAATCAATAA
1 ACAAGACATATTTGAATCAATAA
69739176 AC
1 AC
69739178 TCATGAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.15, G:0.08, T:0.25
Consensus pattern (23 bp):
ACAAGACATATTTGAATCAATAA
Found at i:69741505 original size:9 final size:10
Alignment explanation
Indices: 69741488--69741533 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
69741478 AAAACGAATG
69741488 ATATATAAA-
1 ATATATAAAT
*
69741497 ATATTTAAAT
1 ATATATAAAT
*
69741507 ATATATATAT
1 ATATATAAAT
*
69741517 ATATATATAT
1 ATATATAAAT
69741527 ATATATA
1 ATATATA
69741534 TAAAAGTGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 8 0.24
10 25 0.76
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
ATATATAAAT
Found at i:69741510 original size:2 final size:2
Alignment explanation
Indices: 69741505--69741535 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
69741495 AAATATTTAA
69741505 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69741536 AAAGTGTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69741853 original size:30 final size:27
Alignment explanation
Indices: 69741798--69741858 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 27
69741788 AAATAACATA
* *
69741798 AATAATAATATAAATTACAAGTAGTTT
1 AATAATAATATAAAATACAAATAGTTT
69741825 AATAATGATATATAAAAATACAAATAGTTT
1 AATAAT-A-ATAT-AAAATACAAATAGTTT
69741855 AATA
1 AATA
69741859 CACAAGTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 6 0.21
28 1 0.03
29 4 0.14
30 18 0.62
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (27 bp):
AATAATAATATAAAATACAAATAGTTT
Found at i:69743613 original size:44 final size:43
Alignment explanation
Indices: 69743553--69743792 Score: 185
Period size: 45 Copynumber: 5.4 Consensus size: 43
69743543 TAGTCTTACA
* * * * *
69743553 GCAACTTTAGGAAGATAAGGTTTGTGACTTCAACCTGCTCCACT
1 GCAACTTCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACT
* * *
69743597 GCATCTTCAGGGAGATAAGGATTATG-GCTTTGATCTGCTCCACT
1 GCAACTTCAGGGAGATAA-GATT-TGTACTTTAATCTGCTCCACT
* * * * * * *
69743641 GGAACTTTAGGGAGATAAAATCTGCCATCTTTAGTCTGCTCCATT
1 GCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACT
* * *
69743686 GCAACTTTAGGGAGATAAGACTTGCTATCTTTAGTCTGCTCCACT
1 GCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACT
* * ** * * *
69743731 GCAAATTCAAGGAGATAAGATTACTACTTCAACCTGCTTCACT
1 GCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACT
69743774 GCAACTTCAGGGAGATAAG
1 GCAACTTCAGGGAGATAAG
69743793 GTTTTCAATC
Statistics
Matches: 156, Mismatches: 35, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
42 2 0.01
43 32 0.21
44 46 0.29
45 74 0.47
46 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
GCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACT
Found at i:69743965 original size:177 final size:177
Alignment explanation
Indices: 69743782--69744676 Score: 1104
Period size: 177 Copynumber: 5.1 Consensus size: 177
69743772 CTGCAACTTC
* * * * *
69743782 AGGGAGATAAGGTTTTCAATCTTCAGTTTGCTTCCTTGCTACATCAGGAATATAAGACTACAATC
1 AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
*** * * * * * * * * *
69743847 TTTGGCCTGCTCCCTTGCTACTTTAGGGAGATAAGGCTAGTGGTTAAAATCTACTTCCCTACTAC
66 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* * *
69743912 CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTTCACTACCGCTT
131 CTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * *
69743959 AGGGAGATAAGATCATCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT--AGTC
1 AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
*
69744022 TTCAACCTGCTCTATTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
66 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* * * *
69744087 CCCGAGAAGATAAGATTCGCCATCCTCGATCTACTCTACTACTGCTT
131 CTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * *
69744134 AGGGAGATAGGATCTTCAATC-TCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTTCAA--
1 AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
* * * *
69744196 TTCAGCCTGCTCCCTTTCTACCTTAG-GAAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTA
66 TTCAACCTGCTCTCTTGCTACCTCAGAG-AGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTA
* * * * ** **
69744260 CCTTGGGAAGATGAGATTCACCATCTTTGATCTACTCCACTACTATTT
130 CCTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * *
69744308 AGGGAGATAAGATCTTC-ATCATT-AGTCTGCTTCCTTGTTACCTAAGTAATATAAGACTACAAT
1 AGGGAGATAAGATCTTCAATC-TTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
* * * *
69744371 CTTCAACATGCTCTCTTGCTACTTCAGAGAGATAAGACTAGTGGCTAAAATCTGCTCCCCTGCTA
65 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTA
* ** * * *
69744436 CCTCGAAAAGATAAGATTTACAATCTTCAATCTGCTCCACTGCTGCTT
130 CCTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * *
69744484 AGGGAGATAAGATCTTCAATATTCAGTTTGCTTCTTTGCTACCTCAGGAAGATAAGACTACGATC
1 AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
*
69744549 TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
66 TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* * * *
69744614 ATCGAAAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTATCTC
131 CTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACT-GCTT
*
69744662 AGGGAGATGAGATCT
1 AGGGAGATAAGATCT
69744677 GTGAATTCAC
Statistics
Matches: 611, Mismatches: 96, Indels: 21
0.84 0.13 0.03
Matches are distributed among these distances:
173 4 0.01
174 180 0.29
175 115 0.19
176 110 0.18
177 186 0.30
178 16 0.03
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (177 bp):
AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
CTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
Found at i:69744217 original size:42 final size:44
Alignment explanation
Indices: 69744138--69744230 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 44
69744128 CTGCTTAGGG
* * *
69744138 AGATAGGATCTTCAATCTCAGTCTGCTTCCTTGCTACCTCAAGA
1 AGATAAGATCTTCAATCTCAGCCTGCTCCCTTGCTACCTCAAGA
* * *
69744182 AGATAAGA-CTTCAAT-TCAGCCTGCTCCCTTTCTACCTTAGGA
1 AGATAAGATCTTCAATCTCAGCCTGCTCCCTTGCTACCTCAAGA
69744224 AGATAAG
1 AGATAAG
69744231 GCTGGTGGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 29 0.67
43 7 0.16
44 7 0.16
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (44 bp):
AGATAAGATCTTCAATCTCAGCCTGCTCCCTTGCTACCTCAAGA
Found at i:69744234 original size:174 final size:174
Alignment explanation
Indices: 69743782--69744676 Score: 1040
Period size: 174 Copynumber: 5.1 Consensus size: 174
69743772 CTGCAACTTC
* * * * *
69743782 AGGGAGATAAGGTTTTCAATCTTCAGTTTGCTTCCTTGCTACATCAGGAATATAAGACTACAATC
1 AGGGAGATAAGATCTTCAATC-TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA--
*** * * * * * * * *
69743847 TTTGGCCTGCTCCCTTGCTACTTTAGGGAGATAAGGCTAGTGGTTAAAATCTACTTCCCTACTAC
63 TTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* * *
69743912 CTCGGGAAGATAAGATTCGCCATCTTCAATCTACTTCACTACCGCTT
128 CTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* ***
69743959 AGGGAGATAAGATCATCAATCCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTAGTCTT
1 AGGGAGATAAGATCTTCAAT-CTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATT
* * *
69744024 CAACCTGCTCTATTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCC
65 CAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCT
* * *
69744089 CGAGAAGATAAGATTCGCCATCCTCGATCTACTCTACTACTGCTT
130 CGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * *
69744134 AGGGAGATAGGATCTTCAATCTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGACTTCAATTC
1 AGGGAGATAAGATCTTCAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATTC
* * *
69744199 AGCCTGCTCCCTTTCTACCTTAG-GAAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCT
66 AACCTGCTCTCTTGCTACCTTAGAG-AGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCT
* * * * ** **
69744263 TGGGAAGATGAGATTCACCATCTTTGATCTACTCCACTACTATTT
130 CGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * * *
69744308 AGGGAGATAAGATCTTC-ATCATTAGTCTGCTTCCTTGTTACCTAAGTAATATAAGACTACAATC
1 AGGGAGATAAGATCTTCAATC-TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA--
* * *
69744372 TTCAACATGCTCTCTTGCTA-CTTCAGAGAGATAAGACTAGTGGCTAAAATCTGCTCCCCTGCTA
63 TTCAACCTGCTCTCTTGCTACCTT-AGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTA
* ** * * *
69744436 CCTCGAAAAGATAAGATTTACAATCTTCAATCTGCTCCACTGCTGCTT
127 CCTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
* * * *
69744484 AGGGAGATAAGATCTTCAATATTCAGTTTGCTTCTTTGCTACCTCAGGAAGATAAGACTACGATC
1 AGGGAGATAAGATCTTCAAT-CTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTAC-A-A
* *
69744549 TTCAACCTACTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
63 TTCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTAC
* * * *
69744614 ATCGAAAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTATCTC
128 CTCGAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACT-GCTT
*
69744662 AGGGAGATGAGATCT
1 AGGGAGATAAGATCT
69744677 GTGAATTCAC
Statistics
Matches: 605, Mismatches: 100, Indels: 25
0.83 0.14 0.03
Matches are distributed among these distances:
173 4 0.01
174 182 0.30
175 113 0.19
176 105 0.17
177 181 0.30
178 20 0.03
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (174 bp):
AGGGAGATAAGATCTTCAATCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATTC
AACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCCCCTGCTACCTC
GAGAAGATAAGATTCGCCATCTTCAATCTACTCCACTACTGCTT
Found at i:69745910 original size:7 final size:7
Alignment explanation
Indices: 69745898--69745954 Score: 55
Period size: 7 Copynumber: 8.3 Consensus size: 7
69745888 TTTTTTATTA
69745898 TATTTTT
1 TATTTTT
69745905 TATTTTT
1 TATTTTT
**
69745912 CCTTTTT
1 TATTTTT
* *
69745919 TCTTTCT
1 TATTTTT
69745926 T-TTTTT
1 TATTTTT
69745932 TA-TTTT
1 TATTTTT
69745938 TATTTATT
1 TATTT-TT
69745946 TATTTTT
1 TATTTTT
69745953 TA
1 TA
69745955 AGGTCTCAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
6 11 0.26
7 24 0.57
8 7 0.17
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (7 bp):
TATTTTT
Found at i:69745917 original size:14 final size:12
Alignment explanation
Indices: 69745888--69745953 Score: 60
Period size: 14 Copynumber: 5.1 Consensus size: 12
69745878 TGTTGATTGA
* *
69745888 TTTTTTATTATA
1 TTTTTTATTTTT
69745900 TTTTTTATTTTT
1 TTTTTTATTTTT
*
69745912 CCTTTTTTCTTTCTT
1 --TTTTTTATTT-TT
69745927 TTTTTTATTTTT
1 TTTTTTATTTTT
69745939 ATTTATTTATTTTT
1 -TTT-TTTATTTTT
69745953 T
1 T
69745954 AAGGTCTCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
12 12 0.27
13 13 0.29
14 18 0.40
15 2 0.04
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTTTATTTTT
Found at i:69749160 original size:22 final size:22
Alignment explanation
Indices: 69749135--69749179 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
69749125 TTCACTATAT
69749135 GTGGCTCGGCTCTAAAGAAAGG
1 GTGGCTCGGCTCTAAAGAAAGG
69749157 GTGGCTCGGCTCTAAAGAAAGG
1 GTGGCTCGGCTCTAAAGAAAGG
69749179 G
1 G
69749180 CACTTGAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.38, T:0.18
Consensus pattern (22 bp):
GTGGCTCGGCTCTAAAGAAAGG
Found at i:69755501 original size:18 final size:18
Alignment explanation
Indices: 69755464--69755502 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
69755454 TTGGAAATCA
*
69755464 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
69755482 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
69755500 AAA
1 AAA
69755503 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:69755815 original size:18 final size:18
Alignment explanation
Indices: 69755770--69755807 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
69755760 CAACTTTTAC
69755770 AAAGTGATTTTTGACGAA
1 AAAGTGATTTTTGACGAA
*
69755788 AAAGTGATTTTTGATGAA
1 AAAGTGATTTTTGACGAA
69755806 AA
1 AA
69755808 CATGATTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (18 bp):
AAAGTGATTTTTGACGAA
Found at i:69763774 original size:80 final size:80
Alignment explanation
Indices: 69763690--69763838 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
69763680 TATGGTAACC
* * * *
69763690 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
69763754 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
69763770 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
69763835 CCGG
66 CCGG
69763839 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:69763780 original size:40 final size:38
Alignment explanation
Indices: 69763731--69763838 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
69763721 ATCACGATTT
*
69763731 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
69763771 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
69763811 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
69763839 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:69771869 original size:80 final size:80
Alignment explanation
Indices: 69771785--69771933 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
69771775 TATGGTAACC
* * * *
69771785 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
69771849 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
69771865 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
69771930 CCGG
66 CCGG
69771934 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:69771875 original size:40 final size:38
Alignment explanation
Indices: 69771826--69771933 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
69771816 ATCACGATTT
*
69771826 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
69771866 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
69771906 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
69771934 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:69774074 original size:40 final size:40
Alignment explanation
Indices: 69773975--69774154 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
69773965 TCGAATGGTG
* * *
69773975 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69774016 TCCGGG-TCAATTCTCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
69774056 ACCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
69774096 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69774137 -CTGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
69774155 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
40 86 0.76
41 27 0.24
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69774114 original size:80 final size:81
Alignment explanation
Indices: 69773976--69774154 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 81
69773966 CGAATGGTGT
* * * * *
69773976 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCTCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTACTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
69774041 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * *
69774057 CCGGGTTAAGTCCCGAAGGCATTCGTAC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTACTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * * *
69774120 TGTGCGAATCACTATAA
65 TGTGCGAGTTACCAAAA
* *
69774137 CTGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
69774155 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 57 0.70
81 24 0.29
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTACTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:69781499 original size:49 final size:48
Alignment explanation
Indices: 69781441--69781918 Score: 775
Period size: 49 Copynumber: 9.9 Consensus size: 48
69781431 GTATGAGATG
*
69781441 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
69781489 ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAACGT-AAAGTGT
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
69781537 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
69781586 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
* *
69781635 GTATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
69781683 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGT
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
* *
69781731 ATATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
69781779 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
* *
69781826 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGT
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
*
69781874 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 -TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
69781919 TATATGTGTG
Statistics
Matches: 411, Mismatches: 13, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
47 136 0.33
48 46 0.11
49 229 0.56
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (48 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGT
Found at i:69781523 original size:22 final size:22
Alignment explanation
Indices: 69781495--69781571 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
69781485 GTGTATATAT
69781495 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* **
69781517 ATGTGATGAA--CGTAAAGTGTGTATA
1 ATGTGAT-AAGGCCT-AA-TG-G-CCA
69781542 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
69781565 ATGTGAT
1 ATGTGAT
69781572 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 16
0.65 0.10 0.25
Matches are distributed among these distances:
21 2 0.05
22 16 0.39
23 5 0.12
24 2 0.05
25 5 0.12
26 9 0.22
27 2 0.05
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:69781737 original size:96 final size:96
Alignment explanation
Indices: 69781441--69781918 Score: 764
Period size: 96 Copynumber: 4.9 Consensus size: 96
69781431 GTATGAGATG
* *
69781441 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
* * *
69781506 CCTAATGGCCAATGTGATGAACGT-AAAGTGTG
64 CCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
69781538 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAAGG
* *
69781603 CCTAATGGCCAATGTGATGAATGTGAAAGTGTG
64 CCTAATGGCCAATGTGATGAATGTGAAAGAGTA
*
69781636 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
69781701 TAATGGCCAATGTGATGAATGTGAAAGAGTA
66 TAATGGCCAATGTGATGAATGTGAAAGAGTA
*
69781732 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
69781797 TAATGGCCAATGTGATGAATGTGAAAGAGTA
66 TAATGGCCAATGTGATGAATGTGAAAGAGTA
* *
69781828 TAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
69781891 CCTAATGGCCGATGTGATGAATGTGAAA
64 CCTAATGGCCAATGTGATGAATGTGAAA
69781919 TATATGTGTG
Statistics
Matches: 366, Mismatches: 10, Indels: 11
0.95 0.03 0.03
Matches are distributed among these distances:
94 39 0.11
96 191 0.52
97 82 0.22
98 51 0.14
99 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCAATGTGATGAATGTGAAAGAGTA
Found at i:69781967 original size:48 final size:48
Alignment explanation
Indices: 69781910--69782061 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
69781900 CGATGTGATG
*
69781910 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
69781958 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
69782006 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
69782054 AATGTGAA
1 AATGTGAA
69782062 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:69782146 original size:36 final size:37
Alignment explanation
Indices: 69782101--69782190 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
69782091 AACTTGGAAA
*
69782101 TATGTTCCGGGTGAGACCC-ATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
69782138 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
69782175 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
69782191 TTCGTAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 13 0.25
37 38 0.75
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:69785758 original size:40 final size:40
Alignment explanation
Indices: 69785662--69785799 Score: 195
Period size: 40 Copynumber: 3.4 Consensus size: 40
69785652 CGAATGGTGT
* * * * * *
69785662 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
69785703 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
69785743 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
69785783 CCGGGTTAAGTCCCGAA
1 CCGGGTTAAGTCCCGAA
69785800 TGTGACAGCC
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 63 0.72
41 24 0.28
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:69786486 original size:124 final size:124
Alignment explanation
Indices: 69786264--69786488 Score: 317
Period size: 124 Copynumber: 1.8 Consensus size: 124
69786254 GAATTATGTG
* * ** * * *
69786264 AAATGAAATATGGATGTATATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
* * **
69786329 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
* *
69786388 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
69786453 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
69786489 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
123 1 0.01
124 86 0.99
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTATAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:69786610 original size:40 final size:40
Alignment explanation
Indices: 69786483--69786612 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
69786473 ATGCTGGAAA
* *
69786483 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
69786523 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
69786563 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
69786603 TTATATCCGG
1 TTATATCCGG
69786613 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:69786611 original size:80 final size:80
Alignment explanation
Indices: 69786445--69786612 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
69786435 CAATTGAATG
* * *
69786445 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
69786510 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
69786525 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
69786589 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
69786605 ATATCCGG
1 ATATCCGG
69786613 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:69794528 original size:124 final size:122
Alignment explanation
Indices: 69794308--69794530 Score: 313
Period size: 124 Copynumber: 1.8 Consensus size: 122
69794298 GAATTATGTG
* * * * * *
69794308 AAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGGC
1 AAATGAAATATGAATGTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGGGC
* * **
69794373 TAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAACGA
66 TAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
*
69794430 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATG--TAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
69794495 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTATAT
64 GCTAAGTCCCGAAGACGA-TTATGCTGGAAATTATAT
69794531 CCGGGTTAAG
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
122 15 0.17
123 1 0.01
124 71 0.82
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (122 bp):
AAATGAAATATGAATGTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGGGC
TAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAACGA
Found at i:69794652 original size:40 final size:40
Alignment explanation
Indices: 69794525--69794654 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
69794515 ATGCTGGAAA
* *
69794525 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
69794565 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
69794605 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
69794645 TTATATCCGG
1 TTATATCCGG
69794655 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:69794653 original size:80 final size:80
Alignment explanation
Indices: 69794487--69794654 Score: 198
Period size: 80 Copynumber: 2.1 Consensus size: 80
69794477 CAATTGAATG
* * *
69794487 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
69794552 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * ** *
69794567 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGACATTCATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
69794631 -ATTCGTGC-ACGTGGTT
65 AATT-GTGCTA-GTGGCT
69794647 ATATCCGG
1 ATATCCGG
69794655 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.07
80 69 0.93
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACATTCATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:69796664 original size:29 final size:29
Alignment explanation
Indices: 69796529--69796663 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
69796519 GCTTGGAAGG
69796529 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
69796558 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
69796587 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
69796616 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
69796645 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
69796664 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:69798172 original size:40 final size:40
Alignment explanation
Indices: 69798116--69798227 Score: 113
Period size: 40 Copynumber: 2.8 Consensus size: 40
69798106 GGGTGTTACA
*
69798116 CCGAAGGC-ATTCGTGCGAGTTACTA-AATCCGGGCTAAT-TC
1 CCGAAGGCAATT-GTGCGAGTCACTATAA-CCGGGCT-ATGTC
*
69798156 CCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTC
1 CCGAAGGCAATTGTGCGAGTCACTATAACCGGGCTATGTC
* * * * *
69798196 CCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 CCGAAGGCAATTGTGCGAGTCACTATAACCGG
69798228 TTAAATTCTG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.03
40 54 0.89
41 5 0.08
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.21
Consensus pattern (40 bp):
CCGAAGGCAATTGTGCGAGTCACTATAACCGGGCTATGTC
Found at i:69803809 original size:24 final size:24
Alignment explanation
Indices: 69803777--69803959 Score: 312
Period size: 24 Copynumber: 7.6 Consensus size: 24
69803767 TATCTCAAAT
*
69803777 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
69803801 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69803825 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69803849 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
69803873 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
69803897 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
69803921 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
69803945 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
69803960 ACATAATAAG
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 155 1.00
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:69803972 original size:48 final size:48
Alignment explanation
Indices: 69803777--69803981 Score: 304
Period size: 48 Copynumber: 4.3 Consensus size: 48
69803767 TATCTCAAAT
* *
69803777 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
*
69803825 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
*
69803873 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
* * * ** *
69803921 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
69803969 GCACTATGTGTGC
1 GCACTATGTGTGC
69803982 CACATTCGGT
Statistics
Matches: 146, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
48 142 0.97
49 4 0.03
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.36
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
Found at i:69817095 original size:34 final size:34
Alignment explanation
Indices: 69817056--69817124 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 34
69817046 TCAGCTACCT
*
69817056 TAGAAGAAT-ACATATGCACTGATTAAGTATTGCA
1 TAGAAGAATAAAAT-TGCACTGATTAAGTATTGCA
69817090 TAGAAGAATAAAATTGCACTGATTAAGTATTGCA
1 TAGAAGAATAAAATTGCACTGATTAAGTATTGCA
69817124 T
1 T
69817125 CCATTAATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
34 30 0.91
35 3 0.09
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (34 bp):
TAGAAGAATAAAATTGCACTGATTAAGTATTGCA
Found at i:69828721 original size:30 final size:30
Alignment explanation
Indices: 69828676--69828735 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69828666 ATTTAATACG
69828676 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
69828706 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
69828736 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:69831218 original size:20 final size:20
Alignment explanation
Indices: 69831195--69831233 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69831185 TAAACATGGT
69831195 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
69831215 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
69831234 TGTATTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:69831315 original size:24 final size:24
Alignment explanation
Indices: 69831284--69831476 Score: 271
Period size: 24 Copynumber: 8.0 Consensus size: 24
69831274 GAGGAAGTGC
* *
69831284 AAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
69831308 AAAAGGGCTTATGCCTCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
69831332 AAAACGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
69831356 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
69831380 AAAAAGGGCTTATGCCCTAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
69831405 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
69831429 AAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
69831453 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
69831477 ATGATAAAGT
Statistics
Matches: 151, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
24 118 0.78
25 33 0.22
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:69831475 original size:73 final size:74
Alignment explanation
Indices: 69831284--69831476 Score: 270
Period size: 73 Copynumber: 2.7 Consensus size: 74
69831274 GAGGAAGTGC
* * *
69831284 AAAAGGGCTTACGCCCCAGTTATCAAAAG-GGCTTATGCCT-CAGTGATTAAAACGGCTTATGCC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTTATGCCTCCAGTTATTAAAACGGCTTATGCC
69831347 CCAGTTATT
66 CCAGTTATT
* *
69831356 AAAAGGGCTTATGCCCCAGTTATTAAAA-AGGGCTTATGCC-CTAGTTATTAAAAGGGCTTATGC
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGA-GGCTTATGCCTCCAGTTATTAAAACGGCTTATGC
69831419 CCCAGTTATT
65 CCCAGTTATT
* * *
69831429 AAAAGGGCTTTTGCCCCAATTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTTATGCCTCCAGTTAT
69831477 ATGATAAAGT
Statistics
Matches: 107, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
72 31 0.29
73 75 0.70
74 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (74 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTTATGCCTCCAGTTATTAAAACGGCTTATGCC
CCAGTTATT
Found at i:69836560 original size:40 final size:40
Alignment explanation
Indices: 69836484--69836668 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
69836474 TCGAATGATG
*
69836484 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
69836523 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69836563 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69836603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69836644 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69836669 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 21 0.16
40 109 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69836675 original size:80 final size:78
Alignment explanation
Indices: 69836484--69836701 Score: 237
Period size: 80 Copynumber: 2.7 Consensus size: 78
69836474 TCGAATGATG
* **
69836484 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTACTAAATCCGGGTTAAG-TCCGAAGGCATTT
*
69836548 GTGCGAGTTACTAAA
64 GTGCGAGCTACTAAA
* *
69836563 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGT-CCGAAGGCATT
69836627 TGTGCGAGCTACTATAA
63 TGTGCGAGCTACTA-AA
* ** * *
69836644 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTT-AAGTCCGAAGG
69836702 TACGTGATTC
Statistics
Matches: 118, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
79 35 0.30
80 81 0.69
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGCTACTAAA
Found at i:69844616 original size:40 final size:41
Alignment explanation
Indices: 69844559--69844744 Score: 215
Period size: 40 Copynumber: 4.6 Consensus size: 41
69844549 TCGAATGATG
* *
69844559 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
69844599 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
*
69844639 TCCGGACTAAGAT-CCGAAGGCATTGGTG-TGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCTGAGTTACTAAA
** *
69844679 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTA-AA
* * *
69844720 -CCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
69844745 AACGAGTAGT
Statistics
Matches: 130, Mismatches: 10, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCTGAGTTACTAAA
Found at i:69850745 original size:25 final size:25
Alignment explanation
Indices: 69850708--69850755 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69850698 TTATAATATA
*
69850708 AAAAAGACCGTTTTGCCCCTAGGTG
1 AAAAAGACCGTTTTACCCCTAGGTG
* *
69850733 AAAATGACTGTTTTACCCCTAGG
1 AAAAAGACCGTTTTACCCCTAGG
69850756 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAAGACCGTTTTACCCCTAGGTG
Found at i:69850822 original size:20 final size:20
Alignment explanation
Indices: 69850799--69850837 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69850789 TAAACATGGT
69850799 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
69850819 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
69850838 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:69850914 original size:24 final size:24
Alignment explanation
Indices: 69850887--69851137 Score: 376
Period size: 24 Copynumber: 10.4 Consensus size: 24
69850877 GAAGGAAGTG
69850887 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69850911 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69850935 CAAAAGGGCTTATGCCCCATTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69850959 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69850983 CAGAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
69851007 CAAAAGGGCTTATTCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69851031 AAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69851055 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69851079 CAAAAGGGTTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
69851103 TAAAAGGGCTTTTGCTCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
69851127 TAAAAGAGGCT
1 CAAAAG-GGCT
69851138 AGGCCTCCAG
Statistics
Matches: 206, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
24 202 0.98
25 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:69854558 original size:40 final size:39
Alignment explanation
Indices: 69854393--69854576 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
69854383 AAATTGAATG
* * *
69854393 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
69854433 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
69854473 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
69854513 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
69854552 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
69854577 CTTGGTACGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:69862509 original size:20 final size:20
Alignment explanation
Indices: 69862480--69862526 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
69862470 ATTTTGATAA
*
69862480 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
69862500 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69862520 ACATGAT
1 ACATGAT
69862527 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69862603 original size:24 final size:24
Alignment explanation
Indices: 69862576--69862724 Score: 244
Period size: 24 Copynumber: 6.2 Consensus size: 24
69862566 GAGGAAGTGC
*
69862576 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
69862600 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
69862624 AAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
* *
69862649 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
69862673 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
69862697 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
69862721 AAAA
1 AAAA
69862725 AAGGCTAGGC
Statistics
Matches: 116, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
24 92 0.79
25 24 0.21
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:69862648 original size:49 final size:49
Alignment explanation
Indices: 69862576--69862730 Score: 258
Period size: 49 Copynumber: 3.2 Consensus size: 49
69862566 GAGGAAGTGC
69862576 AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATTA
* * *
69862625 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTA-TC
1 AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATTA
*
69862673 AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTTTGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATTA
*
69862722 AAAAAGGCT
1 AAAAGGGCT
69862731 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 44 0.45
49 53 0.55
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATTA
Found at i:69863779 original size:2 final size:2
Alignment explanation
Indices: 69863772--69863796 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
69863762 AACACTTAGC
69863772 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
69863797 ACAGCTTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:69871528 original size:28 final size:29
Alignment explanation
Indices: 69871461--69871561 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
69871451 ATAGTGAATC
*
69871461 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
*
69871490 CGCACAATTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
69871518 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
69871548 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69871562 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.35
29 19 0.31
30 19 0.31
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:69873735 original size:47 final size:48
Alignment explanation
Indices: 69873665--69873880 Score: 232
Period size: 47 Copynumber: 4.6 Consensus size: 48
69873655 TAAGTTTCCA
*
69873665 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
* * *
69873712 GTGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGCCG
* * *
69873760 ATG-CATGTCCCAGACGT-ATCTTACACTGGCTTA-CATCTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GCCG
* * ** * *
69873806 ATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGCCTCAGTGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGCCG
69873852 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
69873881 AGCTTCTCTA
Statistics
Matches: 143, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
45 1 0.01
46 62 0.43
47 64 0.45
48 16 0.11
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGCCG
Found at i:69873907 original size:47 final size:45
Alignment explanation
Indices: 69873669--69873929 Score: 221
Period size: 47 Copynumber: 5.6 Consensus size: 45
69873659 TTTCCAATGC
* *
69873669 CATGTCCCAGACATGGTCTTACACTGGC-TCATATCTCAAGT--CGGTG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTC--ATCT-AAGTGCCGATG
*
69873715 CCATGTCCCAGACATGGTCTTACACT-GACTATCATCT-CGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CT-TCATCTAAGT-GCCGATG
* * *
69873763 CATGTCCCAGACGTATCTTACACTGGCTTACATCTCAAG-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CATCT-AAGTGCCGATG
* ** * *
69873809 CATGTCCCAGACATGTCTTACACTAGCACTCGCCTCAGTGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TTCATCTAAGTGCCGATG
69873855 CCATGTCCCAGACATGGTCTTACACTAGCTTC-TCTAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTTCATCTAA-GT-GCCGATG
*
69873903 CATGTCCCATACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
69873930 AAATACAAGT
Statistics
Matches: 180, Mismatches: 18, Indels: 33
0.78 0.08 0.14
Matches are distributed among these distances:
45 5 0.03
46 73 0.41
47 76 0.42
48 24 0.13
49 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCATCTAAGTGCCGATG
Found at i:69874284 original size:30 final size:30
Alignment explanation
Indices: 69874243--69874301 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
69874233 AAATTCACAT
* * *
69874243 CCTTGGTAAAATGACCATTTTGTCCCTAGA
1 CCTTGGCAAAATAACCATTTTGCCCCTAGA
69874273 CCTTGGCAAAATAACCATTTTGCCCCTAG
1 CCTTGGCAAAATAACCATTTTGCCCCTAG
69874302 GCTCGAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (30 bp):
CCTTGGCAAAATAACCATTTTGCCCCTAGA
Found at i:69876930 original size:27 final size:27
Alignment explanation
Indices: 69876899--69876950 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
69876889 TGTAGCAATT
* *
69876899 CATACAACCCATGTAATAGTAATTTAA
1 CATACAACCCATGTAACAATAATTTAA
**
69876926 CATACAATTCATGTAACAATAATTT
1 CATACAACCCATGTAACAATAATTT
69876951 GCCATTCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (27 bp):
CATACAACCCATGTAACAATAATTTAA
Found at i:69886196 original size:29 final size:29
Alignment explanation
Indices: 69886136--69886206 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
69886126 ATTTAAGCCC
* * * *
69886136 GCACACATAGTGCCATACCCTTCGAGCTT
1 GCACACTTAGTGCCATACACTTCCAGCAT
* *
69886165 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT
69886194 GCACACTTAGTGC
1 GCACACTTAGTGC
69886207 TAATCTCGTC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATACACTTCCAGCAT
Found at i:69889700 original size:32 final size:32
Alignment explanation
Indices: 69889649--69889719 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 32
69889639 ATAAGCTATA
69889649 AATATGA-TGGCACAAAGCCATCAGTAGCTG-T
1 AATATGATTGGCACAAAGCCATCAGTA-CTGCT
*
69889680 AGTATGATTGGCA-AAGAGCCATCAGTACTGCT
1 AATATGATTGGCACAA-AGCCATCAGTACTGCT
69889712 AATATGAT
1 AATATGAT
69889720 CGACACAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 11 0.31
32 24 0.69
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (32 bp):
AATATGATTGGCACAAAGCCATCAGTACTGCT
Found at i:69889755 original size:22 final size:21
Alignment explanation
Indices: 69889723--69889803 Score: 99
Period size: 22 Copynumber: 3.7 Consensus size: 21
69889713 ATATGATCGA
* *
69889723 CACAGAACCATGATCAAGATGG
1 CACAGAGCCATAATC-AGATGG
69889745 CACAGAGCCATAATCGAGATGG
1 CACAGAGCCATAATC-AGATGG
**
69889767 CACAGAGCCATCTTCAGAATGG
1 CACAGAGCCATAATCAG-ATGG
69889789 CACAGAGCCATAATC
1 CACAGAGCCATAATC
69889804 GGATCAAGTG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 2 0.04
22 49 0.96
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (21 bp):
CACAGAGCCATAATCAGATGG
Found at i:69890239 original size:27 final size:27
Alignment explanation
Indices: 69890209--69890263 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
69890199 TTTTACCCTA
** *
69890209 CAGGCGTATTTTGGTAATTTTACAAAT
1 CAGGCGTATTTCAGTAATCTTACAAAT
*
69890236 CAGGGGTATTTCAGTAATCTTACAAAT
1 CAGGCGTATTTCAGTAATCTTACAAAT
69890263 C
1 C
69890264 GAGGGTCTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (27 bp):
CAGGCGTATTTCAGTAATCTTACAAAT
Found at i:69891779 original size:24 final size:24
Alignment explanation
Indices: 69891734--69891779 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
69891724 CCTAAACTCC
*
69891734 CTCCATGATTTCCTCCCCAATCTT
1 CTCCATGATTTCCTCCACAATCTT
* * *
69891758 CTCCTTGATTTTCTCCATAATC
1 CTCCATGATTTCCTCCACAATC
69891780 CATTCCTTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.17, C:0.37, G:0.04, T:0.41
Consensus pattern (24 bp):
CTCCATGATTTCCTCCACAATCTT
Found at i:69893720 original size:22 final size:22
Alignment explanation
Indices: 69893666--69893750 Score: 75
Period size: 22 Copynumber: 4.0 Consensus size: 22
69893656 AATATGATCA
* * *
69893666 GCACAGAACCATGATCAAGATG
1 GCACAGAGCCATAATCAGGATG
* *
69893688 GCA-GGAGCCATAATCGGGATG
1 GCACAGAGCCATAATCAGGATG
** * *
69893709 GCACAGAGCCATCTTTAGAATG
1 GCACAGAGCCATAATCAGGATG
69893731 GCACAGAGCCATAATC-GGAT
1 GCACAGAGCCATAATCAGGAT
69893751 CAAGTAGCTT
Statistics
Matches: 47, Mismatches: 15, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
21 19 0.40
22 28 0.60
ACGTcount: A:0.34, C:0.22, G:0.27, T:0.16
Consensus pattern (22 bp):
GCACAGAGCCATAATCAGGATG
Found at i:69893841 original size:43 final size:43
Alignment explanation
Indices: 69893775--69893857 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
69893765 CCATCGGCAG
* * **
69893775 GTCCATAGTCGTCTCGTGTGACCCGTGTAACCTTAACAGAATA
1 GTCCACAGTCGTCTCGTGCGACCCGTACAACCTTAACAGAATA
69893818 GTCCACAGTCGTCTCGTGCGACCCGTACAACCTTAACAGA
1 GTCCACAGTCGTCTCGTGCGACCCGTACAACCTTAACAGA
69893858 TCAATACTGG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.24
Consensus pattern (43 bp):
GTCCACAGTCGTCTCGTGCGACCCGTACAACCTTAACAGAATA
Found at i:69894232 original size:27 final size:27
Alignment explanation
Indices: 69894149--69894234 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
69894139 TACCCTACAA
* *
69894149 GGGGTATTTCGGTAATTTTAAAAATTA
1 GGGGTATTTCGGTAATTTTACAAATTG
*
69894176 GGGGTATTTCGATAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAATTG
* * *
69894203 GGGGTATTTTGGTAATCTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAATTG
69894230 GGGGT
1 GGGGT
69894235 CTTAACTACC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.28, C:0.07, G:0.27, T:0.38
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAAATTG
Found at i:69902472 original size:40 final size:40
Alignment explanation
Indices: 69902364--69902613 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
69902354 CGGGATTTAA
* * * * *
69902364 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69902404 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69902444 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69902484 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69902524 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69902564 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69902604 CCGGATATAT
1 CCGGATATAT
69902614 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69910577 original size:40 final size:40
Alignment explanation
Indices: 69910469--69910718 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
69910459 CGGGATTTAA
* * * * *
69910469 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
69910509 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69910549 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69910589 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69910629 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69910669 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
69910709 CCGGATATAT
1 CCGGATATAT
69910719 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:69915354 original size:40 final size:40
Alignment explanation
Indices: 69915309--69915438 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
69915299 CGGAATATAA
69915309 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69915349 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
69915389 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
69915429 CCGGATATAA
1 CCGGATATAA
69915439 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:69915453 original size:40 final size:39
Alignment explanation
Indices: 69915325--69915475 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
69915315 ATAACCATGT
* * *
69915325 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
69915365 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
69915405 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
69915444 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
69915476 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:69915459 original size:80 final size:79
Alignment explanation
Indices: 69915309--69915475 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
69915299 CGGAATATAA
*
69915309 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
69915374 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
69915389 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
69915451 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
69915468 CCGGATAT
1 CCGGATAT
69915476 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:69918939 original size:50 final size:50
Alignment explanation
Indices: 69918855--69919049 Score: 248
Period size: 50 Copynumber: 3.9 Consensus size: 50
69918845 TGATGCTAGG
*
69918855 GATATATGAGAGAT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
1 GATATATGAGAG-TCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
* * * *
69918905 GATAGATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCATT
1 GATATATGAGAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
* ** * * * *
69918955 GATATATGAAAGTCAGTACAAGGCCATATTTGGGACATGGAATCGGCCTC
1 GATATATGAGAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
* *
69919005 GATATACGAGAGTCAGTCTAAGACCATGTTTGGGACATGGCATCG
1 GATATATGAGAGTCAGTGTAAGACCATGTTTGGGACATGGCATCG
69919050 ACTTTAATGT
Statistics
Matches: 121, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
50 121 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (50 bp):
GATATATGAGAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
Found at i:69926885 original size:27 final size:27
Alignment explanation
Indices: 69926855--69926917 Score: 99
Period size: 28 Copynumber: 2.3 Consensus size: 27
69926845 TTTAAAACCC
69926855 TAGGGGTATATCGGTAATTTTGCTCTT
1 TAGGGGTATATCGGTAATTTTGCTCTT
* *
69926882 TAGGGGTAATTTTGGTAATTTTGCTCTT
1 TAGGGGT-ATATCGGTAATTTTGCTCTT
69926910 TAGGGGTA
1 TAGGGGTA
69926918 ATTTCGTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 8 0.24
28 25 0.76
ACGTcount: A:0.19, C:0.08, G:0.29, T:0.44
Consensus pattern (27 bp):
TAGGGGTATATCGGTAATTTTGCTCTT
Found at i:69926902 original size:28 final size:28
Alignment explanation
Indices: 69926867--69926921 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
69926857 GGGGTATATC
69926867 GGTAATTTTGCTCTTTAGGGGTAATTTT
1 GGTAATTTTGCTCTTTAGGGGTAATTTT
69926895 GGTAATTTTGCTCTTTAGGGGTAATTT
1 GGTAATTTTGCTCTTTAGGGGTAATTT
69926922 CGTGATGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.18, C:0.07, G:0.25, T:0.49
Consensus pattern (28 bp):
GGTAATTTTGCTCTTTAGGGGTAATTTT
Found at i:69928566 original size:20 final size:20
Alignment explanation
Indices: 69928543--69928580 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69928533 CACATCCAAA
*
69928543 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
69928563 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
69928581 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:69948084 original size:71 final size:71
Alignment explanation
Indices: 69947968--69948104 Score: 229
Period size: 71 Copynumber: 1.9 Consensus size: 71
69947958 CGCCTGCTAG
* *
69947968 GCACGAAGGCCCGAATACACATCACCGGCACAAAGCTTGCTAGGCACGAAGGCCCGAATACACAT
1 GCACGAAGGCCCAAATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
69948033 CTTCGT
66 CTTCGT
* * *
69948039 GCACGAAGGCCCAAATACACATCACTGGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
1 GCACGAAGGCCCAAATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
69948104 C
66 C
69948105 ACCAGCATGA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (71 bp):
GCACGAAGGCCCAAATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
CTTCGT
Found at i:69948100 original size:43 final size:43
Alignment explanation
Indices: 69948039--69948153 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
69948029 ACATCTTCGT
* ** *
69948039 GCACGAAGGCCCAAATACACATCACTGGTACGAAGCCTGCTAG
1 GCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAG
*
69948082 GCACGAAGGCCCGAATACACATCACCAGCATGAAGCCTGCTAG
1 GCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAG
* * *
69948125 GCACGAAAGCCTGAATATA-AT-ACCAGCAC
1 GCACGAAGGCCCGAATACACATCACCAGCAC
69948154 TAGGCTTGCG
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 7 0.11
42 2 0.03
43 54 0.86
ACGTcount: A:0.35, C:0.30, G:0.22, T:0.13
Consensus pattern (43 bp):
GCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAG
Found at i:69948224 original size:38 final size:38
Alignment explanation
Indices: 69948139--69948255 Score: 155
Period size: 38 Copynumber: 3.1 Consensus size: 38
69948129 GAAAGCCTGA
* * *
69948139 ATATAATACCAGCACTAGGCTTGCGGGATTT-ACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
69948176 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** *
69948214 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
69948254 AT
1 AT
69948256 CCACATCAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
37 28 0.39
38 31 0.44
39 5 0.07
40 7 0.10
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:69951926 original size:27 final size:27
Alignment explanation
Indices: 69951895--69951975 Score: 108
Period size: 28 Copynumber: 3.0 Consensus size: 27
69951885 CCCTAATTGA
*
69951895 TAAAATGAGTGTTTTTCCCTTATGTGG
1 TAAAATGACTGTTTTTCCCTTATGTGG
*
69951922 TAAAATGACTGTTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTT-CCCTTATGTGG
* * *
69951950 TAAAATGACTATTTTGCCCCTATGTG
1 TAAAATGACTGTTTTTCCCTTATGTG
69951976 ATATATGTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 23 0.49
28 24 0.51
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTTCCCTTATGTGG
Found at i:69951946 original size:28 final size:28
Alignment explanation
Indices: 69951895--69951975 Score: 112
Period size: 27 Copynumber: 3.0 Consensus size: 28
69951885 CCCTAATTGA
*
69951895 TAAAATGAGTGTTTTT-CCCTTATGTGG
1 TAAAATGACTGTTTTTGCCCTTATGTGG
*
69951922 TAAAATGACTGTTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTTGCCCTTATGTGG
* *
69951950 TAAAATGACT-ATTTTGCCCCTATGTG
1 TAAAATGACTGTTTTTGCCCTTATGTG
69951976 ATATATGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 28 0.58
28 20 0.42
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.41
Consensus pattern (28 bp):
TAAAATGACTGTTTTTGCCCTTATGTGG
Found at i:69952218 original size:23 final size:24
Alignment explanation
Indices: 69952192--69952236 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
69952182 TTATCCCCAC
*
69952192 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
69952215 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
69952237 GTAGGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:69953297 original size:48 final size:49
Alignment explanation
Indices: 69953220--69953457 Score: 293
Period size: 50 Copynumber: 4.9 Consensus size: 49
69953210 AGGGGAAGAT
* *
69953220 GCCGACGCCATGTCCC-GAACATGGTCTTACACTGGCTCACA-CATCAAA
1 GCCGATGCCATGTCCCAG-ACATGGTCTTACACTGGCTCTCATCATCAAA
* * * * * *
69953268 GTCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCATATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CATCAAA
* * ***
69953318 GCTGATGGCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCGGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATC-ATCAAA
* *
69953368 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATC-TCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCATCAAA
69953416 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
69953458 AATGTGGCTG
Statistics
Matches: 164, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
48 79 0.48
50 85 0.52
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCATCAAA
Found at i:69953471 original size:48 final size:49
Alignment explanation
Indices: 69953220--69953490 Score: 260
Period size: 50 Copynumber: 5.6 Consensus size: 49
69953210 AGGGGAAGAT
* * *
69953220 GCCGACGCCATGTCCC-GAACATGGTCTTACACTGGCTCACACATCAAAGT-
1 GCCGATGCCATGTCCCAG-ACATGGTCTTACACTGGCT--CTCATCAATGTG
* * *
69953270 --CGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCAT-ATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCA-AT-GTG
* * *
69953318 GCTGATGGCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAAT-GTG
*
69953367 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAA--T-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--TCAATGTG
69953416 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAATGTG
* * *
69953464 GCTGATG-CATATCCCATACAT-GTCTTA
1 GCCGATGCCATGTCCCAGACATGGTCTTA
69953491 TACTAGCACA
Statistics
Matches: 188, Mismatches: 19, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
45 3 0.02
46 12 0.06
47 14 0.07
48 77 0.41
49 1 0.01
50 78 0.41
52 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAATGTG
Found at i:69963719 original size:30 final size:30
Alignment explanation
Indices: 69963683--69963743 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
69963673 CATTTAATAC
*
69963683 AAACTTTGGCAAAATTACATTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
* *
69963713 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACACTTTTGCCCCT
69963743 A
1 A
69963744 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:69965256 original size:48 final size:48
Alignment explanation
Indices: 69965185--69965451 Score: 322
Period size: 48 Copynumber: 5.6 Consensus size: 48
69965175 TATAGTACCA
*
69965185 ATGCCATGTCCCAGACATAGTCTTACACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * *
69965233 ATGCCATGTCCCAGACATGGTCTTACACTAGCACATACATCATCG-AG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * *
69965280 AATGCCATGTCCAAGACATGGTCTTACACCGGCACGTACATCATCGCCG
1 -ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
** * * * * * *
69965329 ATGAAATGTCCCAAACAAGGTCTTACACT-GCATACATATTATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * *
69965376 ATGCCATGTCCCAAACATGGTCTTACACAGGCACATATCTCATATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCAT-CGCCG
69965425 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
69965452 TGGAATCTCA
Statistics
Matches: 183, Mismatches: 32, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
47 38 0.21
48 115 0.63
49 30 0.16
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:69973736 original size:37 final size:37
Alignment explanation
Indices: 69973686--69973813 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
69973676 TTATTACGAA
69973686 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
69973723 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
69973760 GTCTTACCCAGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
69973797 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
69973814 TTTCCAAGTT
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 82 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:69973911 original size:48 final size:48
Alignment explanation
Indices: 69973853--69973956 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
69973843 TGTTACAACA
69973853 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
69973901 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
69973949 TTCACATT
1 TTCACATT
69973957 CATCACTTCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:69974108 original size:49 final size:48
Alignment explanation
Indices: 69973948--69974110 Score: 258
Period size: 49 Copynumber: 3.4 Consensus size: 48
69973938 CACACATATA
69973948 TTTCACATTCATCAC-TTCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATT-GGCCATTAGGCCTTATCACAT-TATATACAC
* * *
69973997 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATTATATACAC
69974044 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACAT-TATATACAC
69974093 TTTCACATTCATCACATT
1 TTTCACATTCATCACATT
69974111 TCACATTCAT
Statistics
Matches: 105, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
47 44 0.42
49 60 0.57
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (48 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATTATATACAC
Found at i:69974109 original size:9 final size:9
Alignment explanation
Indices: 69974095--69974126 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
69974085 ATATACACTT
69974095 TCACATTCA
1 TCACATTCA
69974104 TCACATT--
1 TCACATTCA
69974111 TCACATTCA
1 TCACATTCA
69974120 TCACATT
1 TCACATT
69974127 GGCCATTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.33
9 14 0.67
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (9 bp):
TCACATTCA
Found at i:69974113 original size:65 final size:65
Alignment explanation
Indices: 69974044--69974175 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
69974034 ATATATACTC
69974044 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
69974109 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
69974174 TT
1 TT
69974176 GGCCATTAGG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (65 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
Found at i:69974114 original size:16 final size:16
Alignment explanation
Indices: 69974093--69974126 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
69974083 GTATATACAC
69974093 TTTCACATTCATCACA
1 TTTCACATTCATCACA
69974109 TTTCACATTCATCACA
1 TTTCACATTCATCACA
69974125 TT
1 TT
69974127 GGCCATTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (16 bp):
TTTCACATTCATCACA
Found at i:69974133 original size:161 final size:162
Alignment explanation
Indices: 69973947--69974250 Score: 522
Period size: 161 Copynumber: 1.9 Consensus size: 162
69973937 TCACACATAT
69973947 ATTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCAC
1 ATTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCAC
* *
69974012 ATCGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTT
66 ATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGT
*
69974076 ATCACATGTATATACACTTTCACATTCATCAC
131 ATCACATATATATACACTTTCACATTCATCAC
* *
69974108 ATTTCACATTCATCACATT-GGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCA
1 ATTTCACATTCATCAC-TTCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCA
*
69974172 CATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
65 CATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
69974237 GTATCACATATATA
129 GTATCACATATATA
69974251 CATCTCATAC
Statistics
Matches: 134, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
161 81 0.60
162 2 0.01
163 51 0.38
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (162 bp):
ATTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGT
ATCACATATATATACACTTTCACATTCATCAC
Found at i:69974165 original size:49 final size:49
Alignment explanation
Indices: 69974109--69974250 Score: 266
Period size: 49 Copynumber: 2.9 Consensus size: 49
69974099 ATTCATCACA
*
69974109 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
69974158 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
69974207 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
69974251 CATCTCATAC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 91 1.00
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.35
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:69974181 original size:114 final size:112
Alignment explanation
Indices: 69973998--69974224 Score: 409
Period size: 114 Copynumber: 2.0 Consensus size: 112
69973988 TATATACACC
*
69973998 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACATTG
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
*
69974063 GCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAT
66 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
*
69974110 TTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACAT
1 TTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACAT
69974175 TGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
64 TGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
69974224 T
1 T
69974225 GGCCATTAGG
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
112 36 0.33
114 74 0.67
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (112 bp):
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
Found at i:69978079 original size:40 final size:40
Alignment explanation
Indices: 69978017--69978317 Score: 274
Period size: 40 Copynumber: 7.5 Consensus size: 40
69978007 CCAGCATGAT
*
69978017 TGCTCTTC-GAGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGA-ACTTAGCCCGGATACATCACTAGCACGAA
*
69978057 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
69978097 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
69978137 TGCTCTTTGGAATTTGGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
69978177 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * * *
69978216 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACT-AGCACGAA
** * **
69978257 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
69978297 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
69978318 GTATCATTCA
Statistics
Matches: 225, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
39 21 0.09
40 198 0.88
41 6 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:69980268 original size:37 final size:37
Alignment explanation
Indices: 69980218--69980308 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
69980208 TTATTACGAA
69980218 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
69980255 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
69980292 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
69980309 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:69980406 original size:48 final size:48
Alignment explanation
Indices: 69980348--69980451 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
69980338 TGTTACAACA
69980348 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
69980396 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
69980444 TTCACATT
1 TTCACATT
69980452 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:69980510 original size:96 final size:95
Alignment explanation
Indices: 69980441--69980824 Score: 619
Period size: 96 Copynumber: 4.0 Consensus size: 95
69980431 ATCACACATA
* *
69980441 TATTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATACACCTTCACATTCATCAC
1 TATTTCACATTCATCACATTGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCAC
69980505 ATCGGCCATTAGGCCTTATCACATATATAC
66 ATCGGCCATTAGGCCTTATCACATATATAC
*
69980535 TCTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCA
1 TATTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-GTATATACACTTTCACATTCATCA
*
69980600 CATTGGCCATTAGGCCTTATCACATATATAC
65 CATCGGCCATTAGGCCTTATCACATATATAC
*
69980631 TCTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCA
1 TATTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-GTATATACACTTTCACATTCATCA
*
69980696 CATTGGCCATTAGGCCTTATCACATATATA-
65 CATCGGCCATTAGGCCTTATCACATATATAC
*
69980726 TACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 T--A-TTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-GTATATACACTTTCACATTCA
* *
69980791 TCACATTGGCCATTAGGCCGTATCACATATATAC
62 TCACATCGGCCATTAGGCCTTATCACATATATAC
69980825 ATCTCATACA
Statistics
Matches: 277, Mismatches: 7, Indels: 7
0.95 0.02 0.02
Matches are distributed among these distances:
94 38 0.14
95 1 0.00
96 147 0.53
98 91 0.33
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (95 bp):
TATTTCACATTCATCACATTGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACATATATAC
Found at i:69980600 original size:49 final size:48
Alignment explanation
Indices: 69980443--69980825 Score: 648
Period size: 49 Copynumber: 8.0 Consensus size: 48
69980433 CACACATATA
*
69980443 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATTATATACAC
* * *
69980490 CTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATTATATACAC
69980537 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACAT-TATATACAC
*
69980586 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACA-TATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATTATATACAC
69980633 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACAT-TATATACAC
69980682 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACAT-TATATACAC
69980731 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACAT-TATATACAC
*
69980780 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACA-TATATACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATTATATACA
69980826 TCTCATACAT
Statistics
Matches: 323, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 135 0.42
49 188 0.58
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (48 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATTATATACAC
Found at i:69986288 original size:98 final size:100
Alignment explanation
Indices: 69986112--69986305 Score: 286
Period size: 98 Copynumber: 2.0 Consensus size: 100
69986102 TTTGAGATTT
*
69986112 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGGTG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
***
69986177 ATCGGATTGGGTAA-GGGGT-GTTACATTTATTGA
66 ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
* * *
69986210 TCTTTAATAAATTGTGTGCAGTTGTTTGGTAATTGTTCATAACATCTCATTACTCAGGTCCGATG
1 TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
*
69986275 A-CTGGACCAGGTAATGGGGTATTTACATTTA
66 ATC-GGACCAGGTAATGGGGTAGTTACATTTA
69986306 GAACATGAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
97 1 0.01
98 70 0.82
99 5 0.06
100 9 0.11
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.39
Consensus pattern (100 bp):
TCTTTAATAAATTGTATGCAATTGTTTGGTAATTATTCATAACATCTCATTACTCAGGTCCGATG
ATCGGACCAGGTAATGGGGTAGTTACATTTATTGA
Found at i:69987720 original size:42 final size:43
Alignment explanation
Indices: 69987650--69987731 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
69987640 TCTTCCATGT
* **
69987650 AATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACAA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
*
69987693 AATTAAATAT-GATGCCAATGTCCCAGACATGGTCTTACA
1 AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACA
69987732 TGTAAATCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
AATTAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACAA
Found at i:69995070 original size:42 final size:42
Alignment explanation
Indices: 69994978--69995128 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 42
69994968 AATGTCAGCA
* * * * *
69994978 TCCCAGAC-GTGGTCTTCCATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACAG-GGTCTTACACGAAATTAAATAT-GATGCCTATG
*
69995021 TCCCAGACAGGGTCTTACACGAAATTAAATATGATGCCAATG
1 TCCCAGACAGGGTCTTACACGAAATTAAATATGATGCCTATG
* * * * *
69995063 TCCCAGACATGGTCTTACACATAAATCTCAAAT-CGAGGCCTGTG
1 TCCCAGACAGGGTCTTACAC-GAAAT-T-AAATATGATGCCTATG
*
69995107 TCCCAGACACGGTCTTACACGA
1 TCCCAGACAGGGTCTTACACGA
69995129 TATTTCCGAT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
42 27 0.30
43 31 0.34
44 28 0.31
45 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATTAAATATGATGCCTATG
Found at i:69995114 original size:44 final size:43
Alignment explanation
Indices: 69994978--69995126 Score: 144
Period size: 42 Copynumber: 3.5 Consensus size: 43
69994968 AATGTCAGCA
* * *
69994978 TCCCAGACGTGGTCTT-C-CATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACATGGTCTTACACAT-AAATTCAA-ATCGATGCCTATG
* * * *
69995021 TCCCAGACAGGGTCTTACAC-GAAATT-AAATATGATGCCAATG
1 TCCCAGACATGGTCTTACACATAAATTCAAAT-CGATGCCTATG
* *
69995063 TCCCAGACATGGTCTTACACATAAATCTCAAATCGAGGCCTGTG
1 TCCCAGACATGGTCTTACACATAAAT-TCAAATCGATGCCTATG
*
69995107 TCCCAGACACGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
69995127 GATATTTCCG
Statistics
Matches: 86, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 29 0.34
43 22 0.26
44 28 0.33
45 5 0.06
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACATAAATTCAAATCGATGCCTATG
Found at i:69996833 original size:65 final size:65
Alignment explanation
Indices: 69996729--69996858 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
69996719 TACTTATTGC
69996729 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
*
69996794 AATTTAATGAATTATGTGTTTGTAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
69996859 GAGTTGTAGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (65 bp):
AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
Found at i:69998686 original size:65 final size:65
Alignment explanation
Indices: 69998582--69998711 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
69998572 TACTTATTGC
69998582 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
69998647 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
1 AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
69998712 GAGTTGTAGC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.37
Consensus pattern (65 bp):
AATTTAATGAATTATGTGTTTATAGTCTTTTATCATTTCATGAAAAAACTAGAATAAGGAAAGGA
Found at i:70004140 original size:3 final size:3
Alignment explanation
Indices: 70004132--70004164 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
70004122 ATTATATACC
70004132 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
70004165 TTAGGCCTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:70004764 original size:17 final size:18
Alignment explanation
Indices: 70004738--70004787 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 18
70004728 TAAAAATATT
70004738 TTTTTATAATTTTT-A-TA
1 TTTTT-TAATTTTTAATTA
70004755 TTTTCTTAATAATTTTAATTA
1 TTTT-TTAAT--TTTTAATTA
70004776 TTTTTTAATTTT
1 TTTTTTAATTTT
70004788 AAAAAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 8 0.29
18 4 0.14
19 4 0.14
20 6 0.21
21 6 0.21
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTTAATTTTTAATTA
Found at i:70004768 original size:20 final size:19
Alignment explanation
Indices: 70004732--70004784 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
70004722 AAATATTAAA
*
70004732 AATATTTTTTTATAATTTT
1 AATATTTTTTAATAATTTT
*
70004751 TATATTTTCTTAATAATTTT
1 AATATTTT-TTAATAATTTT
70004771 AATTATTTTTTAAT
1 AA-TATTTTTTAAT
70004785 TTTAAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 7 0.24
20 16 0.55
21 6 0.21
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
AATATTTTTTAATAATTTT
Found at i:70004997 original size:16 final size:17
Alignment explanation
Indices: 70004956--70004997 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
70004946 AAAAAAATAC
70004956 AAATTAAAAGATTAAAT
1 AAATTAAAAGATTAAAT
**
70004973 AAACGAAAA-ATTAAAT
1 AAATTAAAAGATTAAAT
*
70004989 AGATTAAAA
1 AAATTAAAA
70004998 TAACTTTTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (17 bp):
AAATTAAAAGATTAAAT
Found at i:70006341 original size:10 final size:10
Alignment explanation
Indices: 70006326--70006359 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
70006316 AATAAAAATA
70006326 ATTATTTATT
1 ATTATTTATT
70006336 ATTATTTATT
1 ATTATTTATT
70006346 ATTATTTA-T
1 ATTATTTATT
70006355 ATTAT
1 ATTAT
70006360 ATAAAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTATTTATT
Found at i:70007085 original size:9 final size:10
Alignment explanation
Indices: 70007070--70007094 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70007060 TATAAATTCC
70007070 AAAAAAAATT
1 AAAAAAAATT
70007080 AAAAAAAATT
1 AAAAAAAATT
70007090 AAAAA
1 AAAAA
70007095 TATATAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAAAAATT
Found at i:70010639 original size:46 final size:45
Alignment explanation
Indices: 70010589--70010762 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
70010579 ATCATCCGTA
*
70010589 GCCGATGCATGTTCCAGACATGTCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TACGTCTCGAG
* *
70010635 GCCGATGCATGTCCC-GAACATGTCTTACACCAG-TACTCGTCTCGAT
1 GCCGATGCATGTCCCAG-ACATGTCTTACACTAGCTA--CGTCTCGAG
* * * **
70010681 GCCGATGCCATGTCCCAGACATGGTTTTATACAAGCT-C-TCATAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTACGTC-T-CGA-G
70010729 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
70010763 CTGCAATAAC
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 56 0.53
47 27 0.25
48 17 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTACGTCTCGAG
Found at i:70013579 original size:18 final size:18
Alignment explanation
Indices: 70013556--70013591 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70013546 TTCTTGGGTG
70013556 ATAATCAATTATTAGCTC
1 ATAATCAATTATTAGCTC
**
70013574 ATAATCTTTTATTAGCTC
1 ATAATCAATTATTAGCTC
70013592 TGGCCACCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (18 bp):
ATAATCAATTATTAGCTC
Found at i:70019377 original size:37 final size:37
Alignment explanation
Indices: 70019335--70019415 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
70019325 CGGGGTTTTA
* *
70019335 ACCCGGATAAAATCTCCACACGTGGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
*
70019372 ACCCGGACAGAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
70019409 ACCCGGA
1 ACCCGGA
70019416 ATATATTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (37 bp):
ACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
Found at i:70019688 original size:48 final size:48
Alignment explanation
Indices: 70019573--70019698 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
70019563 TATTGCACAA
* ** *
70019573 TAGCCATTCGGCTTTACCAAATATACATCCCTCATACATATTTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
70019621 TAGCCATTTGGCTTTACCACATATACATATCTCATACATGTCTCATAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
* *
70019669 TAGCCATTCGGCTTTACCACACATATATAT
1 TAGCCATTCGGCTTTACCACATATACATAT
70019699 ATTTACCTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATCTCATAT
Found at i:70022640 original size:46 final size:46
Alignment explanation
Indices: 70022566--70022735 Score: 132
Period size: 46 Copynumber: 3.6 Consensus size: 46
70022556 GGGTAGGGTG
* * * *
70022566 CCGATGCCATATCCCAGATATGGTCTTACATTGAC-TATTATCTC-ATAA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGACTTA-CATCTCGA-AA
* * **
70022614 CCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCGAAA
* * **
70022660 CCGATGCATGTCCCAGACATGTCTTACACTAGAAC-T-CGTCTTGATG
1 CCGATGCATGTCCCAGACATGTCTTACACT-G-ACTTACATCTCGAAA
70022706 CCGATGCCATGTCCCAGACATGGTCTTACA
1 CCGATG-CATGTCCCAGACAT-GTCTTACA
70022736 TAAGCTCTCA
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
46 58 0.56
47 30 0.29
48 15 0.15
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCGAAA
Found at i:70022764 original size:47 final size:46
Alignment explanation
Indices: 70022614--70022785 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 46
70022604 TATCTCATAA
* * * * *
70022614 CCGATGCATGTCCTAGACATGTCTTACACT-G-GCTTACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGAAC-T-CGTCTTGATG
70022660 CCGATGCATGTCCCAGACATGTCTTACACTAGAACTCGTCTTGATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGAACTCGTCTTGATG
*
70022706 CCGATGCCATGTCCCAGACATGGTCTTACA-TA-AGCTC-TCATAAT-ATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGAACTCGTC-T--TGAT-G
* *
70022754 TCGATGCATGTCCCAGCCATGTCTTACACTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAG
70022786 CCCACAATAA
Statistics
Matches: 108, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
45 2 0.02
46 55 0.51
47 35 0.32
48 16 0.15
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGAACTCGTCTTGATG
Done.