Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 248 of 427
Found at i:70715769 original size:21 final size:21
Alignment explanation
Indices: 70715743--70715802 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
70715733 AAACCTGCAT
70715743 TAGAATGGCTACTACTTATCA
1 TAGAATGGCTACTACTTATCA
70715764 TAGAATGG--A-T--TTAATCA
1 TAGAATGGCTACTACTT-ATCA
*
70715781 TATAATGGCTACTACTTATCA
1 TAGAATGGCTACTACTTATCA
70715802 T
1 T
70715803 CTGCAAACCA
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
16 2 0.06
17 11 0.34
18 1 0.03
19 2 0.06
20 1 0.03
21 13 0.41
22 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (21 bp):
TAGAATGGCTACTACTTATCA
Found at i:70718207 original size:21 final size:21
Alignment explanation
Indices: 70718183--70718232 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
70718173 ATGGTTGAAA
* *
70718183 AGGAAGTTGATGTTGCAGAAG
1 AGGAAGTTGATGCTGAAGAAG
*
70718204 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTGATGCTGAAGAAG
*
70718225 AAGAAGTT
1 AGGAAGTT
70718233 TCAAAAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.24
Consensus pattern (21 bp):
AGGAAGTTGATGCTGAAGAAG
Found at i:70718214 original size:18 final size:18
Alignment explanation
Indices: 70718193--70718227 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70718183 AGGAAGTTGA
*
70718193 TGTTGCAGAAGAGGAAGT
1 TGTTGCAGAAGAAGAAGT
*
70718211 TGTTGCTGAAGAAGAAG
1 TGTTGCAGAAGAAGAAG
70718228 AAGTTTCAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.37, T:0.23
Consensus pattern (18 bp):
TGTTGCAGAAGAAGAAGT
Found at i:70720973 original size:33 final size:33
Alignment explanation
Indices: 70720936--70721000 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
70720926 ACATGTTCTA
* *
70720936 GAAGTGTTTTTTCTATCTAACTTGGATCCTCCG
1 GAAGTGCTTTTTCTATCTAACTTGCATCCTCCG
*
70720969 GAAGTGCTTTTTCTATCTAATTTGCATCCTCC
1 GAAGTGCTTTTTCTATCTAACTTGCATCCTCC
70721001 AAAATCCACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.43
Consensus pattern (33 bp):
GAAGTGCTTTTTCTATCTAACTTGCATCCTCCG
Found at i:70724357 original size:43 final size:42
Alignment explanation
Indices: 70724309--70724429 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
70724299 CATAGGATTT
* * * *
70724309 TCGATATGTGTTCTCATGTAAGACCATGTCTAGGACGTTGGCA
1 TCGATATGTGTT-TCGTGTAAGACCATGTCTGGGACATCGGCA
*
70724352 TCGATATGTGATTACGTGTAAGACCATGTCTGGGACATCGGCA
1 TCGATATGTG-TTTCGTGTAAGACCATGTCTGGGACATCGGCA
* * *
70724395 TCG-TATTTGATTCGTGTAAGACCCTGTCTGGGACA
1 TCGATATGTGTTTCGTGTAAGACCATGTCTGGGACA
70724430 GTTATGAAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 23 0.34
42 5 0.07
43 38 0.56
44 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGATATGTGTTTCGTGTAAGACCATGTCTGGGACATCGGCA
Found at i:70724423 original size:41 final size:43
Alignment explanation
Indices: 70724325--70724429 Score: 151
Period size: 43 Copynumber: 2.5 Consensus size: 43
70724315 TGTGTTCTCA
* * *
70724325 TGTAAGACCATGTCTAGGACGTTGGCATCGATATGTGATTACG
1 TGTAAGACCATGTCTGGGACATCGGCATCGATATGTGATTACG
*
70724368 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATT-CG
1 TGTAAGACCATGTCTGGGACATCGGCATCGATATGTGATTACG
*
70724409 TGTAAGACCCTGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
70724430 GTTATGAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
41 22 0.39
42 8 0.14
43 27 0.47
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGATATGTGATTACG
Found at i:70727951 original size:39 final size:40
Alignment explanation
Indices: 70727854--70727951 Score: 146
Period size: 40 Copynumber: 2.5 Consensus size: 40
70727844 CGGATGATAA
* *
70727854 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTATAT
70727894 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTA-CTATAT
*
70727934 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70727952 TACTTGGTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
39 17 0.31
40 37 0.69
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTATAT
Found at i:70732600 original size:20 final size:20
Alignment explanation
Indices: 70732575--70732613 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
70732565 GTATGTAGTA
*
70732575 TGTCATACTCATAACCAGTT
1 TGTCATACTCACAACCAGTT
70732595 TGTCATACTCACAACCAGT
1 TGTCATACTCACAACCAGT
70732614 CATATAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (20 bp):
TGTCATACTCACAACCAGTT
Found at i:70736569 original size:29 final size:29
Alignment explanation
Indices: 70736535--70736639 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
70736525 TACTCGATTT
* * *
70736535 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
70736564 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
70736593 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
70736622 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
70736640 TATTTCCAGC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:70736627 original size:58 final size:59
Alignment explanation
Indices: 70736573--70736695 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
70736563 CCGCACACAC
* *
70736573 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
* * * *
70736631 AGTGCCATATATTTCCAGCAT-GCACACTCAGTGCCATATTTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
70736689 AGTGCCA
1 AGTGCCA
70736696 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
58 57 0.98
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.28
Consensus pattern (59 bp):
AGTGCCATACACTTCCAGCATCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
Found at i:70736640 original size:29 final size:29
Alignment explanation
Indices: 70736594--70736695 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
70736584 CTTCGAGCTC
70736594 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70736623 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
70736652 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70736681 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
70736696 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:70739492 original size:22 final size:22
Alignment explanation
Indices: 70739467--70739537 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 22
70739457 GTTCTAGGGT
70739467 CACACGAGCATGTCCCTTGGAC
1 CACACGAGCATGTCCCTTGGAC
* * * **
70739489 CACACGGGCATGTTCC-AGGGT
1 CACACGAGCATGTCCCTTGGAC
*
70739510 CACACGAGCGTGTCCCTTGGAC
1 CACACGAGCATGTCCCTTGGAC
70739532 CACACG
1 CACACG
70739538 GGTGTGTGAG
Statistics
Matches: 37, Mismatches: 11, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
21 15 0.41
22 22 0.59
ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGAGCATGTCCCTTGGAC
Found at i:70739509 original size:43 final size:43
Alignment explanation
Indices: 70739456--70739539 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
70739446 AGCACGGGTG
*
70739456 TGTTCTAGGGTCACACGAGCATGTCCCTTGGACCACACGGGCA
1 TGTTCCAGGGTCACACGAGCATGTCCCTTGGACCACACGGGCA
*
70739499 TGTTCCAGGGTCACACGAGCGTGTCCCTTGGACCACACGGG
1 TGTTCCAGGGTCACACGAGCATGTCCCTTGGACCACACGGG
70739540 TGTGTGAGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (43 bp):
TGTTCCAGGGTCACACGAGCATGTCCCTTGGACCACACGGGCA
Found at i:70739515 original size:21 final size:21
Alignment explanation
Indices: 70739456--70739518 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 21
70739446 AGCACGGGTG
*
70739456 TGTTCTAGGGTCACACGAGCA
1 TGTTCCAGGGTCACACGAGCA
* * ** *
70739477 TGTCCCTTGGACCACACGGGCA
1 TGTTCC-AGGGTCACACGAGCA
70739499 TGTTCCAGGGTCACACGAGC
1 TGTTCCAGGGTCACACGAGC
70739519 GTGTCCCTTG
Statistics
Matches: 30, Mismatches: 11, Indels: 2
0.70 0.26 0.05
Matches are distributed among these distances:
21 14 0.47
22 16 0.53
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.21
Consensus pattern (21 bp):
TGTTCCAGGGTCACACGAGCA
Found at i:70744545 original size:39 final size:39
Alignment explanation
Indices: 70744491--70744643 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
70744481 GAATGTTCGA
*
70744491 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
70744530 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
70744569 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
70744608 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
70744644 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:70744659 original size:40 final size:39
Alignment explanation
Indices: 70744492--70744673 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
70744482 AATGTTCGAG
* *
70744492 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
70744531 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
70744570 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
70744609 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
70744649 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
70744674 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:70752526 original size:38 final size:39
Alignment explanation
Indices: 70752475--70752625 Score: 218
Period size: 38 Copynumber: 3.9 Consensus size: 39
70752465 GAATGTTCGA
70752475 GTGATATCCGGGCTAAGCCCGAA-GCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
*
70752513 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAA-TT
* *
70752552 ATGATAT-CGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
* *
70752590 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
70752626 GGTTACCATA
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
38 58 0.57
39 26 0.26
40 17 0.17
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
Found at i:70752583 original size:77 final size:78
Alignment explanation
Indices: 70752476--70752624 Score: 248
Period size: 77 Copynumber: 1.9 Consensus size: 78
70752466 AATGTTCGAG
70752476 TGATATCCGGGCTAAGCCCGAAGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
70752540 ATTGTGCAAGCTA
66 ATTGTGCAAGCTA
* *
70752553 TGATAT-CGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAA-GCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
70752617 ATTTGTGC
65 AATTGTGC
70752625 GGGTTACCAT
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
76 15 0.22
77 36 0.54
78 16 0.24
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCAAGCTA
Found at i:70752641 original size:40 final size:40
Alignment explanation
Indices: 70752482--70752655 Score: 151
Period size: 38 Copynumber: 4.5 Consensus size: 40
70752472 CGAGTGATAT
* *** *
70752482 CCGGGCTAAG-CCCGAA-GCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * **
70752520 CCGGGCTAAG-CCCGAAGGCAATTGTGCAAGCTATGAT-A
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* *** *
70752558 TCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
70752597 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
70752637 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70752656 TGTTTTGAAC
Statistics
Matches: 113, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 49 0.43
39 24 0.21
40 40 0.35
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:70754593 original size:27 final size:27
Alignment explanation
Indices: 70754453--70754581 Score: 161
Period size: 27 Copynumber: 4.8 Consensus size: 27
70754443 CCCCAGATTT
*
70754453 TAAAATTACCGAAATACCCCTGGT-TTG
1 TAAAATTACCGAAATACCCCT-GTAGTG
** *
70754480 TAAAATTACTAAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCCTGTAGTG
*
70754507 TAAAATTATCGAAATACCCCTGTAGTG
1 TAAAATTACCGAAATACCCCTGTAGTG
** * *
70754534 TAAAATTATTGAAATACCCTTATAGTG
1 TAAAATTACCGAAATACCCCTGTAGTG
70754561 TAAAATTACCGAAATACCCCT
1 TAAAATTACCGAAATACCCCT
70754582 ATAGGGAAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.02
27 85 0.98
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCCTGTAGTG
Found at i:70754593 original size:54 final size:54
Alignment explanation
Indices: 70754453--70754581 Score: 197
Period size: 54 Copynumber: 2.4 Consensus size: 54
70754443 CCCCAGATTT
* *
70754453 TAAAATTACCGAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCCT-GTAGTGTAAAATTACTAAAATACCCTTATAGTG
* * *
70754507 TAAAATTATCGAAATACCCCTGTAGTGTAAAATTATTGAAATACCCTTATAGTG
1 TAAAATTACCGAAATACCCCTGTAGTGTAAAATTACTAAAATACCCTTATAGTG
70754561 TAAAATTACCGAAATACCCCT
1 TAAAATTACCGAAATACCCCT
70754582 ATAGGGAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 2 0.03
54 66 0.97
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCCTGTAGTGTAAAATTACTAAAATACCCTTATAGTG
Found at i:70754608 original size:54 final size:54
Alignment explanation
Indices: 70754453--70754597 Score: 157
Period size: 54 Copynumber: 2.7 Consensus size: 54
70754443 CCCCAGATTT
* ** * * * *
70754453 TAAAATTACCGAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCCT-ATAGGGAAAAATGACTGAAATACCCTTATAGTG
* * * * * *
70754507 TAAAATTATCGAAATACCCCTGTAGTGTAAAATTATTGAAATACCCTTATAGTG
1 TAAAATTACCGAAATACCCCTATAGGGAAAAATGACTGAAATACCCTTATAGTG
70754561 TAAAATTACCGAAATACCCCTATAGGGAAAAATGACT
1 TAAAATTACCGAAATACCCCTATAGGGAAAAATGACT
70754598 ATTTTACCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
53 2 0.03
54 77 0.97
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCCTATAGGGAAAAATGACTGAAATACCCTTATAGTG
Found at i:70755043 original size:27 final size:28
Alignment explanation
Indices: 70755013--70755073 Score: 90
Period size: 27 Copynumber: 2.2 Consensus size: 28
70755003 GTGTCAATTG
*
70755013 TATTTACATG-TGGCTCTGTGTTGATCA
1 TATTTACATGATGACTCTGTGTTGATCA
*
70755040 TATTTA-TTGATGACTCTGTGTTGATCA
1 TATTTACATGATGACTCTGTGTTGATCA
70755067 TATTTAC
1 TATTTAC
70755074 CCATGGCTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.21, C:0.13, G:0.18, T:0.48
Consensus pattern (28 bp):
TATTTACATGATGACTCTGTGTTGATCA
Found at i:70755086 original size:27 final size:27
Alignment explanation
Indices: 70755023--70755086 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
70755013 TATTTACATG
***
70755023 TGGCTCTGTGTTGATCATATTTATTGA
1 TGGCTCTGTGTTGATCATATTTACCCA
*
70755050 TGACTCTGTGTTGATCATATTTACCCA
1 TGGCTCTGTGTTGATCATATTTACCCA
*
70755077 TGGCTGTGTG
1 TGGCTCTGTG
70755087 CCGATTATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.17, C:0.16, G:0.23, T:0.44
Consensus pattern (27 bp):
TGGCTCTGTGTTGATCATATTTACCCA
Found at i:70762067 original size:15 final size:15
Alignment explanation
Indices: 70762047--70762098 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
70762037 AATACAAAAC
70762047 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
70762062 ATTTATAATTATAATAAAT
1 ATTTATTA-T-TAAT--AT
*
70762081 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
70762096 ATT
1 ATT
70762099 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:70762084 original size:19 final size:19
Alignment explanation
Indices: 70762060--70762096 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70762050 TATTATTAAT
*
70762060 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
70762079 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
70762097 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:70762162 original size:16 final size:16
Alignment explanation
Indices: 70762131--70762167 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
70762121 ATGTGAATAA
70762131 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
70762147 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
70762163 TATTA
1 TATTA
70762168 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:70762219 original size:22 final size:22
Alignment explanation
Indices: 70762179--70762234 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
70762169 AATAAAATTG
*
70762179 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
70762199 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
70762221 TATTAATAATTTAT
1 AAATAATAAATTAT
70762235 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:70763017 original size:71 final size:71
Alignment explanation
Indices: 70762918--70763056 Score: 199
Period size: 71 Copynumber: 2.0 Consensus size: 71
70762908 TCAAAGTATC
*
70762918 GGTAGAAGTGCAGAAGATGCTAAACTTTGG-TTATTGACTTGACTTGTTTCGATAGAAGTCCTCA
1 GGTAGAAGTGCAGAAGATGCTAAACTTTGGCTT-CTGACTTGACTTGTTTCGATAGAAGTCCTCA
70762982 AGGTGCT
65 AGGTGCT
* * * * * *
70762989 GGTAGAAGTGCAGGAGATGCTGATCTTTGGCTTCTGACTTGACTTGTTTCGGTAGAATTCGTCAA
1 GGTAGAAGTGCAGAAGATGCTAAACTTTGGCTTCTGACTTGACTTGTTTCGATAGAAGTCCTCAA
70763054 GGT
66 GGT
70763057 ATCGATAGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 58 0.97
72 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (71 bp):
GGTAGAAGTGCAGAAGATGCTAAACTTTGGCTTCTGACTTGACTTGTTTCGATAGAAGTCCTCAA
GGTGCT
Found at i:70763192 original size:21 final size:21
Alignment explanation
Indices: 70763168--70763220 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
70763158 GTCTGAGTTA
* *
70763168 TATCGGTAGAACACAGATTTG
1 TATCGGTAGAACACACAATTG
* * *
70763189 TATCGATAGAACTCCCAATTG
1 TATCGGTAGAACACACAATTG
70763210 TATCGGTAGAA
1 TATCGGTAGAA
70763221 TTTTGTAGCC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (21 bp):
TATCGGTAGAACACACAATTG
Found at i:70765309 original size:48 final size:48
Alignment explanation
Indices: 70765213--70765489 Score: 302
Period size: 48 Copynumber: 5.8 Consensus size: 48
70765203 TCTCATATCG
* * **** * * *
70765213 ATGCCATGTCCCAGACATGGTCTTAGACAAAATAACTTATTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
70765261 ATGTCATATCCCAAATATGGTCTTACAAGGGATCACATATAGACGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * *
70765309 ATTCCATATCCCAGATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
70765357 ATGCCATGTCCCAGACATGGTATTACACGGGATCACATGTTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
* * * * *
70765405 ATGCCATGTCCTAAACATGGTCTCACATGGGATCACATATTGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
*
70765453 ATGCCATATCCCAGACATGTTCTTACATGGGATCACA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCACA
70765490 CATAACCCTA
Statistics
Matches: 192, Mismatches: 37, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 192 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACATGGGATCACATATAGATGCCA
Found at i:70765400 original size:144 final size:144
Alignment explanation
Indices: 70765213--70765489 Score: 383
Period size: 144 Copynumber: 1.9 Consensus size: 144
70765203 TCTCATATCG
* * * * *
70765213 ATGCCATGTCCCAGACATGGTCTTAGACAAAATAACTTATTGATGCCAATGTCATATCCCAAATA
1 ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATTGATGCCAATGCCATATCCCAAACA
* * *
70765278 TGGTCTTACAAGGGATCACATATAGACGCCAATTCCATATCCCAGATATGGTCTTACATGGGATC
66 TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
70765343 ACATATCGATGCCA
131 ACATATCGATGCCA
*** * * * *
70765357 ATGCCATGTCCCAGACATGGTATTACACGGGATCACATGTTGATGCCAATGCCATGTCCTAAACA
1 ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATTGATGCCAATGCCATATCCCAAACA
* * * *
70765422 TGGTCTCACATGGGATCACATATTGATGCCAATGCCATATCCCAGACATGTTCTTACATGGGATC
66 TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
70765487 ACA
131 ACA
70765490 CATAACCCTA
Statistics
Matches: 114, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
144 114 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTATTACACAAAATAACATATTGATGCCAATGCCATATCCCAAACA
TGGTCTCACAAGGGATCACATATAGACGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
ACATATCGATGCCA
Found at i:70772019 original size:48 final size:48
Alignment explanation
Indices: 70771841--70772164 Score: 296
Period size: 48 Copynumber: 7.0 Consensus size: 48
70771831 CACATAGTAA
** * *
70771841 GATGCCAATGTAATATCCCAGATATGGTCTTACATGGGATCACAAATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
70771889 GAAGCC---G--ATAGCCCAG-CTATGGTCTTACATGATG-TCTCATATC
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATG-GGATCACATATC
* * * ** *
70771932 GATGCC-ATGCC-T-T---AAACATGGTGTTAGATGAAATAACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * * *
70771974 AATGCCAATGCCATATCCTAGATATGATCTTACATGTGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * *
70772022 GATGCCAATGTCATATCCCAGATATGGTCTTACGTGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* ** *
70772070 GATGCCAATGCCATGTCCCAGACATGGTCTTATGTGGGATCACATATT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
*
70772118 GATGCCAACGCCATATCCCAGACATGGTCTTACATGGGATCACATAT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATAT
70772165 AACCCTAATA
Statistics
Matches: 223, Mismatches: 39, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
42 24 0.11
43 39 0.17
44 2 0.01
45 3 0.01
46 1 0.00
48 154 0.69
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:70775100 original size:18 final size:19
Alignment explanation
Indices: 70775079--70775114 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70775069 TTTTTTTATT
70775079 ATTAATA-ATTTTAAAATA
1 ATTAATATATTTTAAAATA
*
70775097 ATTAATATTTTTTAAAAT
1 ATTAATATATTTTAAAAT
70775115 TTAGAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATTAATATATTTTAAAATA
Found at i:70777883 original size:20 final size:20
Alignment explanation
Indices: 70777855--70777892 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70777845 ATATAATTTA
*
70777855 TATTTTAAAAAAATATTATT
1 TATTATAAAAAAATATTATT
*
70777875 TATTATAAAAAATTATTA
1 TATTATAAAAAAATATTA
70777893 GCACTAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATTATAAAAAAATATTATT
Found at i:70783675 original size:40 final size:40
Alignment explanation
Indices: 70783630--70783739 Score: 123
Period size: 40 Copynumber: 2.8 Consensus size: 40
70783620 GCGGTTTAAT
* * *
70783630 ATAGCTTCGGCTACA-AATGGCACTAAGTGTATGAGTTGGT
1 ATAGCTTCAGCTACATAA-GGCACTAAGTGTACGAGTTGGC
* * *
70783670 GTAGCTTCAGCTATATAAGGCACTAAGTGTGCGAGTTGGC
1 ATAGCTTCAGCTACATAAGGCACTAAGTGTACGAGTTGGC
* * *
70783710 ATAGCTTCAGATATATAAGGCACTCAGTGT
1 ATAGCTTCAGCTACATAAGGCACTAAGTGT
70783740 GCGATACCGA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
40 58 0.97
41 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (40 bp):
ATAGCTTCAGCTACATAAGGCACTAAGTGTACGAGTTGGC
Found at i:70783740 original size:40 final size:40
Alignment explanation
Indices: 70783648--70783743 Score: 138
Period size: 40 Copynumber: 2.4 Consensus size: 40
70783638 GGCTACAAAT
** ** *
70783648 GGCACTAAGTGTATGAGTTGGTGTAGCTTCAGCTATATAA
1 GGCACTAAGTGTGCGAGTTGGCATAGCTTCAGATATATAA
70783688 GGCACTAAGTGTGCGAGTTGGCATAGCTTCAGATATATAA
1 GGCACTAAGTGTGCGAGTTGGCATAGCTTCAGATATATAA
*
70783728 GGCACTCAGTGTGCGA
1 GGCACTAAGTGTGCGA
70783744 TACCGACTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAGTTGGCATAGCTTCAGATATATAA
Found at i:70788157 original size:40 final size:40
Alignment explanation
Indices: 70788097--70788476 Score: 406
Period size: 40 Copynumber: 9.6 Consensus size: 40
70788087 TATTCGAATG
*
70788097 ATATCCGGGCTAAG-TCCCGAAGGC-TCTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCAT-TTGTGCTAGTGACT
* *
70788137 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
*
70788177 ATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAG-TGACT
* *
70788217 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
70788257 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
70788297 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
70788337 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
70788377 ATATCCAGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
70788417 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGT-AGCT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGA-CT
70788456 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
70788477 ATACTTGGGT
Statistics
Matches: 294, Mismatches: 32, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
37 1 0.00
38 13 0.04
39 18 0.06
40 255 0.87
41 7 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:70788310 original size:120 final size:120
Alignment explanation
Indices: 70788097--70788476 Score: 565
Period size: 120 Copynumber: 3.2 Consensus size: 120
70788087 TATTCGAATG
* * * *
70788097 ATATCCGGGCTAAGTCCCGAAGGC-TCTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCAT-TTGTGCTAGCGACTATATCCGGGCTAAG-TCCCGAAGG
* * * *
70788160 CATTTGTGCGAGTTG-CTATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGCT
64 CATTTATGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
70788217 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
*
70788282 TTTATGCTAGTGACCATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
66 TTTATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* *
70788337 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCAGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
* *
70788402 TTTATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTAGCT
66 TTTATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
70788456 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
70788477 ATACTTGGGT
Statistics
Matches: 241, Mismatches: 15, Indels: 10
0.91 0.06 0.04
Matches are distributed among these distances:
117 1 0.00
118 13 0.05
119 21 0.09
120 205 0.85
121 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:70796300 original size:27 final size:27
Alignment explanation
Indices: 70796260--70796373 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 27
70796250 AGGAAGCGTC
*
70796260 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
70796287 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
70796313 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* * *
70796341 TTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
70796368 CTGGTG
1 CTGGTG
70796374 ACTTCATCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
26 5 0.07
27 67 0.89
28 3 0.04
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:70796346 original size:54 final size:54
Alignment explanation
Indices: 70796257--70796373 Score: 207
Period size: 54 Copynumber: 2.2 Consensus size: 54
70796247 TGAAGGAAGC
*
70796257 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
70796311 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
70796365 GTTCTGGTG
1 GTCCTGGTG
70796374 ACTTCATCAC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:70805668 original size:29 final size:29
Alignment explanation
Indices: 70805635--70805708 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
70805625 GTGACGAGAT
70805635 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
70805664 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
70805693 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70805709 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:70805724 original size:29 final size:29
Alignment explanation
Indices: 70805692--70805767 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
70805682 CTGGAAATAT
* *
70805692 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
70805721 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
70805750 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
70805768 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:70805735 original size:58 final size:58
Alignment explanation
Indices: 70805635--70805767 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
70805625 GTGACGAGAT
* * * * * *
70805635 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
70805693 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
70805751 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70805768 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:70813539 original size:29 final size:29
Alignment explanation
Indices: 70813506--70813579 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
70813496 GTGACGAGAT
70813506 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
70813535 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
70813564 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70813580 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:70813595 original size:29 final size:29
Alignment explanation
Indices: 70813563--70813638 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
70813553 CTGGAAATAT
* *
70813563 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
70813592 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
70813621 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
70813639 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:70813606 original size:58 final size:58
Alignment explanation
Indices: 70813506--70813638 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
70813496 GTGACGAGAT
* * * * * *
70813506 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
70813564 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
70813622 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
70813639 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:70819171 original size:40 final size:40
Alignment explanation
Indices: 70819116--70819453 Score: 540
Period size: 40 Copynumber: 8.5 Consensus size: 40
70819106 CGGATGATAA
* *
70819116 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
70819156 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70819196 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70819236 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70819276 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70819316 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
70819356 CCGGGCTAAGTCCCGAAGGCATTTAAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
70819396 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
70819436 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70819454 TACATGGTTT
Statistics
Matches: 286, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
39 17 0.06
40 268 0.94
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70827289 original size:40 final size:40
Alignment explanation
Indices: 70827234--70827530 Score: 451
Period size: 40 Copynumber: 7.5 Consensus size: 40
70827224 CGGATGATAA
* *
70827234 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
70827274 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70827314 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70827354 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70827394 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
70827434 TCGGGCTAAGT-CCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
70827473 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
70827513 CC-GGCTAAATCCCAAAGG
1 CCGGGCTAAGTCCCGAAGG
70827531 TACATGGTTT
Statistics
Matches: 243, Mismatches: 11, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
38 2 0.01
39 47 0.19
40 193 0.79
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70834841 original size:68 final size:67
Alignment explanation
Indices: 70834769--70834918 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70834759 CATCATGTGT
* * * *
70834769 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70834831 ATGTAG
62 ATGTAG
** * *
70834837 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70834902 AG
66 AG
70834904 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70834919 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70834874 original size:64 final size:64
Alignment explanation
Indices: 70834793--70834976 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70834783 AGACATTATG
* *
70834793 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70834857 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70834922 AA
63 AA
* * * *
70834924 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
70834977 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70836065 original size:2 final size:2
Alignment explanation
Indices: 70836058--70836086 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
70836048 TCATGACATG
70836058 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70836087 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70839289 original size:68 final size:67
Alignment explanation
Indices: 70839217--70839366 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
70839207 CATCATGTGT
* * * *
70839217 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
70839279 ATGTAG
62 ATGTAG
** * *
70839285 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
70839350 AG
66 AG
70839352 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
70839367 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:70839322 original size:64 final size:64
Alignment explanation
Indices: 70839241--70839424 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
70839231 AGACATTATG
* *
70839241 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
70839305 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
70839370 AA
63 AA
* * * *
70839372 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
70839425 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:70840500 original size:2 final size:2
Alignment explanation
Indices: 70840493--70840521 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
70840483 TCATGACATG
70840493 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70840522 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70841262 original size:28 final size:28
Alignment explanation
Indices: 70841222--70841280 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
70841212 GAACAACAAA
*
70841222 AACTTCACTGCCCCAAGACAGATTAGTT
1 AACTCCACTGCCCCAAGACAGATTAGTT
*
70841250 AACTCCACTGCCCCAAGATAGATTAGTT
1 AACTCCACTGCCCCAAGACAGATTAGTT
70841278 AAC
1 AAC
70841281 AATTAACAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.24
Consensus pattern (28 bp):
AACTCCACTGCCCCAAGACAGATTAGTT
Found at i:70843286 original size:40 final size:40
Alignment explanation
Indices: 70843241--70843428 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
70843231 ATAACCACAA
* *
70843241 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
70843281 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
*
70843321 GCACAAATGCCTTCGGGTCTTAACCCGGATTTAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
70843361 GCACAAATGCCTTCGGGTCTTAACCAGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
70843401 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
70843429 GTATCATTCA
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 130 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:70843326 original size:80 final size:79
Alignment explanation
Indices: 70843221--70843432 Score: 300
Period size: 80 Copynumber: 2.7 Consensus size: 79
70843211 TCTTCGGAAT
* *
70843221 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
70843285 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
70843300 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATTTAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
70843365 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * * *
70843380 TTAACCAGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
70843433 CATTCAATTG
Statistics
Matches: 117, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
79 5 0.04
80 111 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:70847965 original size:49 final size:49
Alignment explanation
Indices: 70847860--70848034 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 49
70847850 AAATGTCGAC
* ** * * *
70847860 GCCATGTCCCAGACATGGTCTTACACTGGCTAGC--ACATCAAAGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTTTCATACATCGAGGACGAT
*
70847908 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATACATCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATACATCGAGGACGAT
* * * * * *
70847957 GTCGTGTCCTAGACAGGTCTTACATTGGCTTTCAT-CTATCG-GTGATGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATAC-ATCGAG-GACGAT
*
70848006 GCCATGTCCCAGACAGGTCTTCCACTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGAC
70848035 ACTCAACAAG
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
47 15 0.14
48 17 0.16
49 72 0.69
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTTTCATACATCGAGGACGAT
Found at i:70848121 original size:48 final size:46
Alignment explanation
Indices: 70848044--70848218 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
70848034 CACTCAACAA
* * * * **
70848044 GCTGATGCCATGTCCCAAACAGGTTTTACACTAGCTTGTATTTCTCAAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAAG
* *
70848093 GCTGATGCATGTGCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAG
* * * * **
70848139 GCTGATGCATGTCCCAGACATTTCTTACACTGGCTCTCATAAT-GTG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTCAAG
*
70848185 GCTGATGCATGTCCCAGACATGTCTTAGACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
70848219 ACACATATCA
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
46 73 0.69
47 3 0.03
48 23 0.22
49 7 0.07
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAG
Found at i:70848148 original size:46 final size:45
Alignment explanation
Indices: 70848002--70848218 Score: 165
Period size: 46 Copynumber: 4.7 Consensus size: 45
70847992 CTATCGGTGA
* * * **
70848002 TGATGCCATGTCCCAGACAGGTCTTCCACT-GACACTC-AACAA-GC
1 TGATG-CATGTCCCAGACATGTCTTACACTAG-CTCTCTCTCAATGC
* * * * * *
70848046 TGATGCCATGTCCCAAACAGGTTTTACACTAGCTTGTATTTCTCAAGGC
1 TGATG-CATGTCCCAGACATGTCTTACACTAGC---TCTCTCTCAATGC
*
70848095 TGATGCATGTGCCAGACATGTCTTACACTAGCTCTCGTCTCAATGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGC
* * *
70848141 TGATGCATGTCCCAGACATTTCTTACACTGGCTCTC-AT-AATGTGGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAA--T-GC
*
70848187 TGATGCATGTCCCAGACATGTCTTAGACTAGC
1 TGATGCATGTCCCAGACATGTCTTACACTAGC
70848219 ACACATATCA
Statistics
Matches: 141, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
43 2 0.01
44 29 0.21
45 4 0.03
46 72 0.51
47 1 0.01
48 26 0.18
49 7 0.05
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGC
Found at i:70850536 original size:17 final size:17
Alignment explanation
Indices: 70850510--70850542 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70850500 TTTAATTAGA
*
70850510 TAAATTAATTTCTCAAT
1 TAAATAAATTTCTCAAT
70850527 TAAATAAATTTCTCAA
1 TAAATAAATTTCTCAA
70850543 CCCAATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATAAATTTCTCAAT
Found at i:70850676 original size:4 final size:4
Alignment explanation
Indices: 70850667--70850697 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
70850657 TTCAAACTTA
70850667 AATT AATT AATT AATT AATT AATT AA-T AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
70850698 CGGAAACCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:70854874 original size:29 final size:29
Alignment explanation
Indices: 70854840--70854911 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
70854830 ATCAACCACA
* **
70854840 CACACTTAGTGCCATGTACTTT-AAACTTG
1 CACACTTAGTGCCATGCA-TTTCAAACCCG
*
70854869 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCG
70854898 CACACTTAGTGCCA
1 CACACTTAGTGCCA
70854912 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCG
Found at i:70855568 original size:2 final size:2
Alignment explanation
Indices: 70855550--70855590 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
70855540 TGATGGCCGA
* *
70855550 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
70855591 AACTATACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:70858221 original size:27 final size:28
Alignment explanation
Indices: 70858165--70858234 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
70858155 AAATTTGTAC
70858165 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
70858193 AGCACTAAGTGTGCTAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
70858220 AGCACTAAATGTGCG
1 AGCACTAAGTGTGCG
70858235 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:70865968 original size:29 final size:29
Alignment explanation
Indices: 70865926--70866004 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
70865916 CTTAATAATC
*
70865926 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
70865956 AACTCGTACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70865985 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70866005 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70869244 original size:105 final size:103
Alignment explanation
Indices: 70869033--70869234 Score: 287
Period size: 105 Copynumber: 1.9 Consensus size: 103
70869023 GACACGGGCA
** * *
70869033 TGTGCTCGGCCATGTGAGAACCCCTGTAGGTTTGAAATGAGTAATAAATTCAATTTATTCTACAC
1 TGTGCTCGGCCATGTGAGAACCCCTGTAGGTTCAAAATGAGTAATAAATTCAATTAATTCCACAC
* *
70869098 CGGTAAGGGACACAGGTGTGTCCCAAAGCACACAGATG
66 CGATAAGGGACACAGGTGTGTCCCAAAACACACAGATG
**
70869136 TGTGCTCGGCTGTGTGAGAACCCCATGTAGGTTCAAAATGAGTAAATAAATTCAATTAATTCCAC
1 TGTGCTCGGCCATGTGAGAACCCC-TGTAGGTTCAAAATGAGT-AATAAATTCAATTAATTCCAC
* * *
70869201 ACTGATATGGGACACGGGTGTGTCCCAAAACACA
64 ACCGATAAGGGACACAGGTGTGTCCCAAAACACA
70869235 TGGGTGTGTG
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
103 22 0.26
104 16 0.19
105 48 0.56
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (103 bp):
TGTGCTCGGCCATGTGAGAACCCCTGTAGGTTCAAAATGAGTAATAAATTCAATTAATTCCACAC
CGATAAGGGACACAGGTGTGTCCCAAAACACACAGATG
Found at i:70886871 original size:69 final size:71
Alignment explanation
Indices: 70886789--70886950 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
70886779 CGATTTGTCT
70886789 CGTAGCTCTCTTGTCTACATGGTGTCC-TCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70886852 CTTTCA
66 CTTTCA
70886858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70886923 CTTTCA
66 CTTTCA
70886929 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70886951 GATACATCTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 27 0.30
70 24 0.26
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70886988 original size:71 final size:70
Alignment explanation
Indices: 70886789--70886984 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
70886779 CGATTTGTCT
* * *
70886789 CGTAGCTCTCTTGTCTACATGGTGT-CCTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70886852 CTTTCA
65 CTTTCA
* * * *
70886858 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70886923 CTTTCA
65 CTTTCA
* *
70886929 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70886985 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 26 0.22
70 26 0.22
71 43 0.37
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70894410 original size:70 final size:71
Alignment explanation
Indices: 70894327--70894489 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
70894317 CGATTTGTCT
70894327 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70894391 CTTTCA
66 CTTTCA
70894397 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70894462 CTTTCA
66 CTTTCA
70894468 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70894490 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70894527 original size:71 final size:70
Alignment explanation
Indices: 70894327--70894523 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
70894317 CGATTTGTCT
* * * *
70894327 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70894391 CTTTCA
65 CTTTCA
* * * *
70894397 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
70894462 CTTTCA
65 CTTTCA
* *
70894468 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
70894524 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70896597 original size:39 final size:40
Alignment explanation
Indices: 70896420--70896587 Score: 232
Period size: 40 Copynumber: 4.2 Consensus size: 40
70896410 CGGATGATAA
* * * ** *
70896420 CCGGGCTAAGTCCCAAAGGCATTCGTGCTAGTGGCTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
70896460 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
70896500 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
70896540 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATAT
70896580 CC-GGCTAA
1 CCGGGCTAA
70896588 ATTCTGAAGG
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
39 8 0.07
40 108 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:70906149 original size:40 final size:40
Alignment explanation
Indices: 70906090--70906296 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
70906080 CAATTGAATG
* * * *
70906090 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
70906130 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
70906170 ACATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
70906209 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
70906249 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
70906289 ATATCCGG
1 ATATCCGG
70906297 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 31 0.22
40 109 0.78
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:70906227 original size:79 final size:80
Alignment explanation
Indices: 70906091--70906296 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 80
70906081 AATTGAATGA
* * ** * ** * *
70906091 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
70906156 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
70906169 TACATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
70906233 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
70906250 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
70906297 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 62 0.58
80 42 0.39
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:70913018 original size:79 final size:79
Alignment explanation
Indices: 70912870--70913075 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
70912860 AATTGAATGA
* * ** * *
70912870 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
70912935 TTGTGCTAG-CG-AC
65 TTGTGCAAGTCGTAC
* * *
70912948 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
* *
70913013 TTTGTGCAAGTCGTTC
64 ATTGTGCAAGTCGTAC
*
70913029 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTAGTTATATCCGG
70913076 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 66 0.61
80 40 0.37
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGTAC
Found at i:70913060 original size:40 final size:40
Alignment explanation
Indices: 70912869--70913075 Score: 213
Period size: 40 Copynumber: 5.2 Consensus size: 40
70912859 CAATTGAATG
* * ** * **
70912869 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
70912909 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
70912949 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
70912988 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
70913028 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
70913068 ATATCCGG
1 ATATCCGG
70913076 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 35 0.25
40 102 0.73
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:70916146 original size:69 final size:69
Alignment explanation
Indices: 70916035--70916171 Score: 247
Period size: 69 Copynumber: 2.0 Consensus size: 69
70916025 GGTACATGTA
* * *
70916035 CATATATTGTTCTAATGTTTTTGTAAATTGGTAAATAATTATGAGTGGCTATGATTCTTTCTTAT
1 CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
70916100 GCAG
66 GCAG
70916104 CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
1 CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
70916169 GCA
66 GCA
70916172 AAACAAACTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.45
Consensus pattern (69 bp):
CATATATTGTTCTAATGTTTGTGTAAATTGGTAAATAATTATGAGCGGCTATAATTCTTTCTTAT
GCAG
Found at i:70923733 original size:40 final size:40
Alignment explanation
Indices: 70923678--70923845 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
70923668 TGAATGATAC
* *
70923678 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
70923718 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
70923758 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
70923798 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
70923838 CC-GGCTAA
1 CCGGGCTAA
70923846 ATTCCGAAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 6 0.06
40 98 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:70932771 original size:27 final size:27
Alignment explanation
Indices: 70932731--70932844 Score: 135
Period size: 27 Copynumber: 4.2 Consensus size: 27
70932721 AGGAAGCGTC
*
70932731 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
*
70932758 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTATGCCACAAT-TATCTGAT
70932784 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTATGCCACAATTATCTGAT
* * *
70932812 TTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
70932839 CTGGTG
1 CTGGTG
70932845 ACTTCATCAC
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
26 5 0.07
27 67 0.89
28 3 0.04
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:70932817 original size:54 final size:54
Alignment explanation
Indices: 70932728--70932844 Score: 207
Period size: 54 Copynumber: 2.2 Consensus size: 54
70932718 TGAAGGAAGC
*
70932728 GTCCTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
70932782 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
70932836 GTTCTGGTG
1 GTCCTGGTG
70932845 ACTTCATCAC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:70946173 original size:14 final size:14
Alignment explanation
Indices: 70946154--70946182 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70946144 GGTATAAGGG
70946154 ACAATATGTATGTC
1 ACAATATGTATGTC
70946168 ACAATATGTATGTC
1 ACAATATGTATGTC
70946182 A
1 A
70946183 TTGATTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (14 bp):
ACAATATGTATGTC
Found at i:70948336 original size:21 final size:21
Alignment explanation
Indices: 70948308--70948355 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
70948298 TGTATTTACT
70948308 TAAT-ATTTAAGAA-ATAATAA
1 TAATAATTTAA-AATATAATAA
*
70948328 TTATAATTTAAAATATAATAA
1 TAATAATTTAAAATATAATAA
70948349 TAATAAT
1 TAATAAT
70948356 AATGATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATAATTTAAAATATAATAA
Found at i:70949626 original size:12 final size:12
Alignment explanation
Indices: 70949596--70949628 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
70949586 TATATATTTT
70949596 AAAATT-ATATA
1 AAAATTAATATA
70949607 AAAA-TAATATA
1 AAAATTAATATA
70949618 AAAATTAATAT
1 AAAATTAATAT
70949629 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:70950035 original size:6 final size:6
Alignment explanation
Indices: 70950026--70950051 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
70950016 CCTGACTATG
70950026 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
70950052 CCTACGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:70952658 original size:48 final size:48
Alignment explanation
Indices: 70952580--70952749 Score: 243
Period size: 48 Copynumber: 3.5 Consensus size: 48
70952570 CCTCATGCCA
* *
70952580 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAACTATGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACTATGCTG
* * * *
70952628 ATGCCATGTCCCAGACATGGTTTTATACTGGCTTACATAA-TGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACT-ATGCTG
*
70952676 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACTATGCTG
* *
70952724 ATTCCATGTCCCAAACATGGTCTTAC
1 ATGCCATGTCCCAGACATGGTCTTAC
70952750 GTAGTTACAC
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
47 1 0.01
48 106 0.99
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACTATGCTG
Found at i:70962292 original size:27 final size:27
Alignment explanation
Indices: 70962240--70962378 Score: 131
Period size: 27 Copynumber: 5.1 Consensus size: 27
70962230 GTGATGAAGT
*
70962240 CACCAGATACAAATAT-TGTGGCAGAGC
1 CACCAGA-ACAGATATATGTGGCAGAGC
* *
70962267 CACTAGAACAGATATATGTGGTAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* * *
70962294 CACCAGATCAGATA-ATCATGGCATAGC
1 CACCAGAACAGATATAT-GTGGCAGAGC
*
70962321 CACCAGAACAGATATATGTGACAGAGC
1 CACCAGAACAGATATATGTGGCAGAGC
* * * *
70962348 CACTAGATCAGATA-ATTGTGACATAGC
1 CACCAGAACAGATATA-TGTGGCAGAGC
70962375 CACC
1 CACC
70962379 TGGACGCTTC
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
26 10 0.11
27 80 0.87
28 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATATGTGGCAGAGC
Found at i:70962373 original size:54 final size:54
Alignment explanation
Indices: 70962240--70962378 Score: 181
Period size: 54 Copynumber: 2.6 Consensus size: 54
70962230 GTGATGAAGT
* * * **
70962240 CACCAGATACAAAT-ATTGTGGCAGAGCCACTAGAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
**
70962294 CACCAGATCAGATAATCATGGCATAGCCACCAGAACAGATATATGTGACAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
* *
70962348 CACTAGATCAGATAATTGTGACATAGCCACC
1 CACCAGATCAGATAATTGTGGCATAGCCACC
70962379 TGGACGCTTC
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.05
54 69 0.95
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGACAGAGC
Found at i:70964564 original size:19 final size:20
Alignment explanation
Indices: 70964540--70964577 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70964530 GGTACCACCA
70964540 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70964559 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70964578 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70964950 original size:46 final size:46
Alignment explanation
Indices: 70964802--70964973 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
70964792 AACCCGCCCC
* * * *
70964802 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
70964848 TAAATGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
70964895 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
70964940 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70964974 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 22 0.21
46 45 0.43
47 24 0.23
48 2 0.02
49 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:70972138 original size:19 final size:20
Alignment explanation
Indices: 70972114--70972151 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
70972104 GGTACCACCA
70972114 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
70972133 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
70972152 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:70972445 original size:46 final size:46
Alignment explanation
Indices: 70972378--70972544 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
70972368 CGCCCCTAAG
*
70972378 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGAATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGAATCCATAAA
* * * * **
70972424 TGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCAT-TCGA-ATCCAT-AAA
* * * * * * *
70972471 CGAACTCGGACTCAACCCAACGAGTTCGGACATTTGCATCTATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGAATCCATAAA
70972517 TGAACTCGGACTCAACTCAACGAGTTCG
1 TGAACTCGGACTCAACTCAACGAGTTCG
70972545 TGTGACAGCT
Statistics
Matches: 94, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
44 2 0.02
45 4 0.04
46 56 0.60
47 29 0.31
48 1 0.01
49 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGAATCCATAAA
Found at i:70974256 original size:59 final size:58
Alignment explanation
Indices: 70974160--70974291 Score: 219
Period size: 59 Copynumber: 2.3 Consensus size: 58
70974150 AAAATTGTAC
*
70974160 AGCATTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* **
70974218 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGTTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
70974277 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70974292 GATTCACTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
58 22 0.32
59 47 0.68
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:70974280 original size:88 final size:89
Alignment explanation
Indices: 70974130--70974291 Score: 245
Period size: 88 Copynumber: 1.8 Consensus size: 89
70974120 GACAAGATTG
* * * *
70974130 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCATTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
70974195 AAGTGTGCGAACTGAAAATATATA
66 AAGTGTGCGAACTGAAAATATATA
* * **
70974219 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGTTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
70974283 AAGTGTGCG
66 AAGTGTGCG
70974292 GATTCACTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
88 50 0.77
89 15 0.23
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAACTGAAAATATATA
Found at i:70974303 original size:29 final size:29
Alignment explanation
Indices: 70974160--70974291 Score: 219
Period size: 29 Copynumber: 4.5 Consensus size: 29
70974150 AAAATTGTAC
* *
70974160 AGCATTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
*
70974189 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
70974218 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
*
70974248 AGCACTAAGTGTGCGAGTTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
70974277 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70974292 GATTCACTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 71 0.72
30 28 0.28
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:70981496 original size:30 final size:29
Alignment explanation
Indices: 70981460--70981619 Score: 241
Period size: 29 Copynumber: 5.5 Consensus size: 29
70981450 GACAAGATTG
* * * *
70981460 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
*
70981490 GCACTAAGTGTGCGAACTG-AAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
*
70981518 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
70981547 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
70981577 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
70981606 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70981620 GATTCACTAT
Statistics
Matches: 122, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
28 24 0.20
29 54 0.44
30 44 0.36
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:70981597 original size:59 final size:57
Alignment explanation
Indices: 70981460--70981619 Score: 239
Period size: 59 Copynumber: 2.8 Consensus size: 57
70981450 GACAAGATTG
* * * *
70981460 GCACTAAGTGTGCGGGTTTAAAATTGTATAGCACTAAGTGTGCGAACTGAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAATATATA
* *
70981518 GCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTG-AAA-TATATA
70981577 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
70981620 GATTCACTAT
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
57 23 0.25
58 22 0.24
59 48 0.52
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAACTGAAATATATA
Found at i:70988848 original size:29 final size:29
Alignment explanation
Indices: 70988806--70988939 Score: 241
Period size: 29 Copynumber: 4.6 Consensus size: 29
70988796 TTAAAAATTG
70988806 TATAGCACTAAGTGTGCGAACTGAAAATA
1 TATAGCACTAAGTGTGCGAACTGAAAATA
70988835 TATAGCACTAAGTGTGCGAACTGAAAATA
1 TATAGCACTAAGTGTGCGAACTGAAAATA
* *
70988864 TATAGCACTAAGTGTGCGAGCTGAAATTA
1 TATAGCACTAAGTGTGCGAACTGAAAATA
*
70988893 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAACTGAAAATA
70988922 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
70988940 GATTCACTAT
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 102 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.25
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAACTGAAAATA
Found at i:70988951 original size:29 final size:29
Alignment explanation
Indices: 70988779--70988941 Score: 213
Period size: 29 Copynumber: 5.6 Consensus size: 29
70988769 GACAAGATTG
** * *
70988779 GCACTAAGTGTGCGGGTTTAAAAATTGTATA
1 GCACTAAGTGTGC-GGACTGAAAA-TATATA
*
70988810 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGGACTGAAAATATATA
*
70988839 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGGACTGAAAATATATA
*
70988868 GCACTAAGTGTGC-GAGCTGAAATTATATA
1 GCACTAAGTGTGCGGA-CTGAAAATATATA
70988897 GCACTAAGTGTGC-GAGCTGAAAATATATA
1 GCACTAAGTGTGCGGA-CTGAAAATATATA
70988926 GCACTAAGTGTGCGGA
1 GCACTAAGTGTGCGGA
70988942 TTCACTATAT
Statistics
Matches: 122, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
28 1 0.01
29 100 0.82
30 8 0.07
31 13 0.11
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (29 bp):
GCACTAAGTGTGCGGACTGAAAATATATA
Found at i:70990807 original size:30 final size:30
Alignment explanation
Indices: 70990773--70990832 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
70990763 ATTTAATACG
70990773 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
70990803 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
70990833 GGATCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:70992200 original size:26 final size:26
Alignment explanation
Indices: 70992169--70992276 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
70992159 TGAAATGTCC
*
70992169 ATCATGGAACATTTACTTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
70992195 ATCATGGAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
70992221 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
70992247 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
70992273 ATCA
1 ATCA
70992277 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
25 2 0.03
26 72 0.97
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:70992247 original size:52 final size:52
Alignment explanation
Indices: 70992169--70992276 Score: 171
Period size: 52 Copynumber: 2.1 Consensus size: 52
70992159 TGAAATGTCC
* * *
70992169 ATCATGGAACATTTACTTAAACCATTATCATGGAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACACATT
* *
70992221 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACACATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACACATT
70992273 ATCA
1 ATCA
70992277 ATTTGTACCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACACATT
Found at i:70995359 original size:23 final size:23
Alignment explanation
Indices: 70995333--70995378 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
70995323 TTCTTCCTTC
70995333 TAATTTAAAGTTTTATTTG-ATTT
1 TAATTTAAA-TTTTATTTGTATTT
* *
70995356 TAATTTTAATTTTTTTTGTATTT
1 TAATTTAAATTTTATTTGTATTT
70995379 GATAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (23 bp):
TAATTTAAATTTTATTTGTATTT
Found at i:70995807 original size:696 final size:694
Alignment explanation
Indices: 70992600--70996067 Score: 4806
Period size: 693 Copynumber: 5.0 Consensus size: 694
70992590 GGGCGTTACA
* * *
70992600 TTGATAAATTAAATAAAAACTATTCTAGTCTTGTTTATATGTGTTTATTTATATTTAATTTATTT
1 TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
* *
70992665 TGTTCGCTAACGTATTTTGTCTAACAATCTTAAGATAGAT-CTT-TATATTTTTTGAAATTCTCT
66 TGTT-GCTAACGTGTTTTGTCTAACAATCTTAAGATAGATCCTTGT-TA-TTTTTGCAATTCTCT
* * *
70992728 AATCCGAGAAGAACGAAACACCAAGGGGAAAAGAACAAAAAATTCATTTTT-AAAT-TTTTTTTT
128 AATCCGAGACGAACGAAACACCAAGGCGAAAAGAA-AAAAAA-TCATTTTTAAAATAATTTTTTT
* * *
70992791 AAAAAATTGGATAAAATCTATTTCGGGATTTATTCCCACCGTTCAACGGATTTTATTCTAATTTT
191 AAAAAAGTGGATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAATTTT
* * * *
70992856 AATTTTATTTTAGCCCAACACGAAATTATTTTTGGCTCATTAATGACAGATTTTGTGGTTATTTC
256 GATTTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTC
* * * * * * *
70992921 AAAATTTTCC-CCTATCCTACATGCTTATAAAAAGTTGTGTCTTCTGTAGGATTAAACCAACACA
321 CAGATTTTCCACC-ATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACT
* *
70992985 CTGATATTCTTCTTATACCGAAATTCTGTTGCTCTCAAAATTCTTCATTTTCCTCTTCGTATTTT
385 CTGATATT-TTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTT
* *** * * *
70993050 TCAAACTTTTCGATGATAGAAAAATATAAAGTTTGTTAGTTGATCGTTGTAGAGGTGTTACAACT
449 TCAAACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACT
* * * *
70993115 TTGACCACTATTGTTGTTGTATCTTG-GAAGACATTCGACCAACATTTCTCTAAGTACAGTAGGA
514 TTGACCACTATTGTTGTTGTATCCTGAG-AGACATTCGACCAACGTTTCTCCAAGTACCGTAGGA
* * * *
70993179 GCGGTCAAATCAGTCTTAAGGAAACTGTATTTCACAGGTCTCAACGTTTCGTAAAATCTCTATTC
578 GCGGTCGAATCTGTCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTC
* * *
70993244 TTCCTTCTAATTTAAACTTTTATTTTATTTTAAGTTTGATTTTTTTTTCGTAT
643 TTCCTTCTAATTTAAACTTTTATTTGATTTTAA-TTTTAATTTTTTTTCGTAT
*
70993297 TTGATAAATTAAATATAAACAATTCTATTCTTATTTTATATGTGTTTATTTATATTTAATTTATT
1 TTGATAAATTAAATATAAACTATTCTATTCTTA-TTTATATGTGTTTATTTATATTTAATTTATT
* * * * *
70993362 TTATTTGATAACGTGTTTTGTCTAACAATCTTAAGACAAATCCTTATTATTTTTGCAATTCTCTA
65 TT-GTTGCTAACGTGTTTTGTCTAACAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTA
* * *
70993427 ATCCGAGACGAACAAAACACCCAGGCGAAAAG---AAAAATTATTTTTAAAATAA-TTTTTTAAA
129 ATCCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAA
* * * * * * *
70993488 ATAGTGTATAAAATCTGTTTC-GAATTTTATTTCCGCCGTTCAATGGATTTTATTCCACTTTTGA
194 AAAGTGGATAAAATCTATTTCGGGA-TTTATTCCCGCCGTTCAACGGATTTTATTCCAATTTTGA
* * * *
70993552 TTTTATTTTAACCCAACACGAATTTATTTTTAGCTCCTTAATAGCAGATTTTGTGGTTTTTTCCA
258 TTTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCA
* * *
70993617 AATTTTCCACCATCTTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTA
323 GATTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTG
* * * * *
70993682 ATATTTTTCTTATACCAAAATTCTATTGCTCTCAAAATTCTTCCTTTTCCTTTTCATATTTTTCA
388 ATA-TTTTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCA
* * * *
70993747 AACTTTTTGGTGATAAAAAAAGGCAAAGGATT-TTCGTTGATCGTTGTAAAGGTGCTACTACTTT
452 AACTTTTCGGTGATAGAAAAAGGCAAA-GTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTT
* * * * *** *
70993811 GATCATTATTGTTGTTGTATCCTGAGAGGCATTCGACCAATGTTTCTCCAAGTGTAGTA-GAGCA
516 GACCACTATTGTTGTTGTATCCTGAGAGACATTCGACCAACGTTTCTCCAAGTACCGTAGGAGCG
* * *
70993875 GTTGAATCTGTCTT-AGGAAAACTGTGTTTCACAAGCCTCAACGTTTTGTAAAATCTCTATTCTT
581 GTCGAATCTGTCTTAAGG-AAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTT
*
70993939 CCTTCTAATTTAAACTTTTATTTGATTTTAATTTTGATTTTTTTT-GTAT
645 CCTTCTAATTTAAACTTTTATTTGATTTTAATTTTAATTTTTTTTCGTAT
70993988 TTGATAAATTAAATATAAACTATTCTATTCTTATTTTATATGTGTTTATTTATATTTAATTTATT
1 TTGATAAATTAAATATAAACTATTCTATTCTTA-TTTATATGTGTTTATTTATATTTAATTTATT
* * *
70994053 TTGTCCGCTAACATGTTTTGTCTAATAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTA
65 TTGT-TGCTAACGTGTTTTGTCTAACAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTA
* * *
70994118 ATCCGAGATGAACAAAACACCAAGGGGAAAAG-AAAAAAATCATTTTTAAAATAAATTTTTTTAA
129 ATCCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAAT-AATTTTTTTAA
* * * * *
70994182 AAAAGTGGATAAAATCTATTTCGAGATTTATTCTCGCAGTTCTACGGATTTTATTCCATTTTTGA
193 AAAAGTGGATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAATTTTGA
* *
70994247 TTTTATTTTAGCCCAACATGAATATATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCA
258 TTTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCA
* * * *
70994312 GATTTTCCACCATCCTACATGCCTATAAAAGGTTATGTTTACTGTAGGATTAAACCAACACACTG
323 GATTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTG
* * *
70994377 ATATTCTTCTTATATCGAAATTCTGTTA-CTCTCAAAATTCTTCATTTTCCTCTTTGTATTTTTC
388 ATATT-TTCTTATACCGAAATTCTG-TAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTC
*** * * * *
70994441 AAA--TTTCGGTGATAGAAAAATATAAAGTTCGTTCGTTGATCATTGTAGAGGTGTTACAACTTT
451 AAACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTT
* * * *
70994504 GACCACTATTGTTGTTGTATCTTGGGAGACATTCGACCAGCGTTTCTCCAAGTACCGTAGGAGTG
516 GACCACTATTGTTGTTGTATCCTGAGAGACATTCGACCAACGTTTCTCCAAGTACCGTAGGAGCG
* *
70994569 GTCGAATCTGTCTTAAGGAAACTGTATTTCACAGGTCTCAACGTTTCGTAAAATCTCTATTCTTC
581 GTCGAATCTGTCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTC
* * *
70994634 CTTCTAATTTAAACTTTTATTTTATTTTAAGTTTGATTTTTTTTTCGTAT
646 CTTCTAATTTAAACTTTTATTTGATTTTAA-TTTTAATTTTTTTTCGTAT
* *
70994684 TTGATAAATTAAATATAAACTAATCTATTTTTATTTATATGTGTTTATTTATATTTAATTTATTT
1 TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
70994749 TGTTCGCTAACGTGTTTTGTCTAACAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTAA
66 TGTT-GCTAACGTGTTTTGTCTAACAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTAA
* *
70994814 TCCAAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAAATCATTTTT--AAT-ATTTTTTTTAA
130 TCCGAGACGAACGAAACACCAAGGCGAAAAG-AAAAAAAATCATTTTTAAAATAATTTTTTTAAA
* * * * * * *
70994876 AATGTGGATAAAATCTATTTTGAGATTTATTCCCGCCATTCAAAGGACTTTATTCCAATTTTAAT
194 AAAGTGGATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAATTTTGAT
* * * *
70994941 TTTATTTAAGCCCAACACAAATATATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATATCCAG
259 TTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCAG
*
70995006 ATTTTCCACCATCCTACATGCCTATAAAAGGCAGTGTTTTCTGTAGGATTAAACCAACACTCTGA
324 ATTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGA
* * *
70995071 TATTTTTCTTATACTGAAATTCTGTAGCTCTTAGAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
389 TA-TTTTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
* * *
70995136 ACTTTTCGGTAATAGAAAAAGGCAAAGTTTGTTTGTTGATCATTGTAGAGGTGCTACTACTTTGA
453 ACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGA
* * * **
70995201 TCACTGTTGTTGTTGTATCCTGAGAGACATTTGACCAACGTTTCTCCAAGTACCGTAAAAGCGGT
518 CCACTATTGTTGTTGTATCCTGAGAGACATTCGACCAACGTTTCTCCAAGTACCGTAGGAGCGGT
* * * * * *
70995266 CGAATATTTCTTAAAGAAACTGTGTTTCACAGGGCTCAACATTTCGTAAAATCCCTATTCTTCCT
583 CGAATCTGTCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTCCT
*
70995331 TCTAATTTAAAGTTTTATTTGATTTTAATTTTAATTTTTTTT-GTAT
648 TCTAATTTAAACTTTTATTTGATTTTAATTTTAATTTTTTTTCGTAT
70995377 TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
1 TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
* *
70995442 TGTCTGCTAACATGTTTTGTCTAACAATCTTAAGACAGATCCTTGTTATTTTTGCAATTCTCTAA
66 TGT-TGCTAACGTGTTTTGTCTAACAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTAA
** * *
70995507 TTTGAGACGAACGAAACACTAAGGCAAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAAA
130 TCCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTT-AAA
* * ** * **
70995572 AAAATGAATAAAATCTATTTCGGGATTTATTCCTACTGTTCAATAGATTTTATTCCAATTTTGAT
194 AAAGTGGATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAATTTTGAT
* * *
70995637 TTTATTTTAGCCCAACACGTATTTATTTTTGGCTCATTAATGGTAGATTTTGTGGTTATTTCCAG
259 TTTATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCAG
*
70995702 ATTTTCCACCATTCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGA
324 ATTTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGA
* * * *
70995767 TATTTATCTTATTCCAAAACTCTGTAGCTTTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
389 TATTT-TCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAA
* *
70995832 ACTTTTTGATGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGA
453 ACTTTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGA
* * * * *
70995897 CTATTGTTGTTGTTGTATCCTGGGAGACATTCGACCAATGTTTCTCCAAGTACCGT-GGATGCGG
518 CCACTATTGTTGTTGTATCCTGAGAGACATTCGACCAACGTTTCTCCAAGTACCGTAGGA-GCGG
* * * *
70995961 TTGAATCTATCTTAAGGAAACTGTGTTTCATAGGCCTCAACATTTCGTAAAATCTCTATTCTTCC
582 TCGAATCTGTCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTCC
* *
70996026 TTCTAATTTAAACTTCTATTTAATTTTAATTTTAATTTTTTT
647 TTCTAATTTAAACTTTTATTTGATTTTAATTTTAATTTTTTT
70996068 CATATTTTCA
Statistics
Matches: 2451, Mismatches: 281, Indels: 79
0.87 0.10 0.03
Matches are distributed among these distances:
690 1 0.00
691 152 0.06
692 34 0.01
693 602 0.25
694 444 0.18
695 582 0.24
696 477 0.19
697 44 0.02
698 107 0.04
699 7 0.00
700 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (694 bp):
TTGATAAATTAAATATAAACTATTCTATTCTTATTTATATGTGTTTATTTATATTTAATTTATTT
TGTTGCTAACGTGTTTTGTCTAACAATCTTAAGATAGATCCTTGTTATTTTTGCAATTCTCTAAT
CCGAGACGAACGAAACACCAAGGCGAAAAGAAAAAAAATCATTTTTAAAATAATTTTTTTAAAAA
AGTGGATAAAATCTATTTCGGGATTTATTCCCGCCGTTCAACGGATTTTATTCCAATTTTGATTT
TATTTTAGCCCAACACGAATTTATTTTTGGCTCCTTAATGGCAGATTTTGTGGTTATTTCCAGAT
TTTCCACCATCCTACATGCCTATAAAAGGCTGTGTTTTCTGTAGGATTAAACCAACACTCTGATA
TTTTCTTATACCGAAATTCTGTAGCTCTCAAAATTCTTCCTTTTCCTCTTCGTATTTTTCAAACT
TTTCGGTGATAGAAAAAGGCAAAGTTTGTTCGTTGATCGTTGTAGAGGTGCTACTACTTTGACCA
CTATTGTTGTTGTATCCTGAGAGACATTCGACCAACGTTTCTCCAAGTACCGTAGGAGCGGTCGA
ATCTGTCTTAAGGAAACTGTGTTTCACAGGCCTCAACGTTTCGTAAAATCTCTATTCTTCCTTCT
AATTTAAACTTTTATTTGATTTTAATTTTAATTTTTTTTCGTAT
Found at i:70999486 original size:15 final size:16
Alignment explanation
Indices: 70999466--70999502 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
70999456 TATTATATTC
70999466 TTATTTTATATGT-AT
1 TTATTTTATATGTAAT
*
70999481 TTA-TTTATATTTAAT
1 TTATTTTATATGTAAT
70999496 TTATTTT
1 TTATTTT
70999503 GTTCACTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 8 0.42
15 8 0.42
16 3 0.16
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTATTTTATATGTAAT
Found at i:71000462 original size:8 final size:8
Alignment explanation
Indices: 71000423--71000463 Score: 50
Period size: 7 Copynumber: 5.2 Consensus size: 8
71000413 CTTTATATAT
71000423 ATTTAAAA
1 ATTTAAAA
71000431 ATATTAAAA
1 AT-TTAAAA
*
71000440 A-TTAATA
1 ATTTAAAA
71000447 ATTT-AAA
1 ATTTAAAA
71000454 ATTTAAAA
1 ATTTAAAA
71000462 AT
1 AT
71000464 ATTTAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
7 12 0.43
8 9 0.32
9 7 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
ATTTAAAA
Found at i:71002260 original size:27 final size:25
Alignment explanation
Indices: 71002221--71002271 Score: 66
Period size: 27 Copynumber: 2.0 Consensus size: 25
71002211 TTAGGATGTA
71002221 TAAAAAAAATAAAAAAATTTATAAAG
1 TAAAAAAAATAAAAAAATTT-TAAAG
* *
71002247 TAAATAAATATAAATAAATTTTAAA
1 TAAA-AAAAATAAAAAAATTTTAAA
71002272 TTTATTAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (25 bp):
TAAAAAAAATAAAAAAATTTTAAAG
Found at i:71005906 original size:22 final size:22
Alignment explanation
Indices: 71005881--71005926 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
71005871 AGTACCGTGT
* *
71005881 TGCTGAACAAAGAGCATTGTAG
1 TGCTAAACAAAGAACATTGTAG
71005903 TGCTAAACAAAGAACATTGTAG
1 TGCTAAACAAAGAACATTGTAG
71005925 TG
1 TG
71005927 ATAAGTAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (22 bp):
TGCTAAACAAAGAACATTGTAG
Found at i:71005956 original size:21 final size:22
Alignment explanation
Indices: 71005923--71005991 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
71005913 AGAACATTGT
* * *
71005923 AGTGATAAGTAGATAGAACC-A
1 AGTGATGATTAGAGAGAACCAA
* *
71005944 AGTGTTGATTAGAGAGCACCAA
1 AGTGATGATTAGAGAGAACCAA
* *
71005966 AGTGATGATTAGAGAGTATCAA
1 AGTGATGATTAGAGAGAACCAA
71005988 AGTG
1 AGTG
71005992 CTAAATAGAG
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 15 0.38
22 24 0.62
ACGTcount: A:0.41, C:0.09, G:0.28, T:0.23
Consensus pattern (22 bp):
AGTGATGATTAGAGAGAACCAA
Found at i:71005974 original size:22 final size:22
Alignment explanation
Indices: 71005943--71006005 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
71005933 AGATAGAACC
*
71005943 AAGTGTTGATTAGAGAGCACCA
1 AAGTGATGATTAGAGAGCACCA
* *
71005965 AAGTGATGATTAGAGAGTATCA
1 AAGTGATGATTAGAGAGCACCA
* * *
71005987 AAGTGCTAAATAGAGAGCA
1 AAGTGATGATTAGAGAGCA
71006006 TCGAAGTGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.41, C:0.10, G:0.27, T:0.22
Consensus pattern (22 bp):
AAGTGATGATTAGAGAGCACCA
Found at i:71006012 original size:22 final size:22
Alignment explanation
Indices: 71005975--71006040 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
71005965 AAGTGATGAT
* *
71005975 TAGAGAGTATCAAAGTGCTAAA
1 TAGAGAGCATCGAAGTGCTAAA
71005997 TAGAGAGCATCGAAGTGCTAAA
1 TAGAGAGCATCGAAGTGCTAAA
* * *
71006019 CAAAGAGCA-CAGAAGTACTAAA
1 TAGAGAGCATC-GAAGTGCTAAA
71006041 CCCGTACAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
21 1 0.03
22 37 0.97
ACGTcount: A:0.47, C:0.14, G:0.23, T:0.17
Consensus pattern (22 bp):
TAGAGAGCATCGAAGTGCTAAA
Found at i:71014207 original size:21 final size:21
Alignment explanation
Indices: 71014177--71014222 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
71014167 CTCTAACTAT
71014177 TTTTAATATATTATTTTAAAA
1 TTTTAATATATTATTTTAAAA
*
71014198 TTTTATTATATTATTTTAAAA
1 TTTTAATATATTATTTTAAAA
71014219 TTTT
1 TTTT
71014223 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTAATATATTATTTTAAAA
Found at i:71014700 original size:26 final size:26
Alignment explanation
Indices: 71014671--71014724 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
71014661 TTGAAAATTT
* *
71014671 TTCGAATCGAGTCAAATGAAATAAAA
1 TTCGAATCAAGTCAAATCAAATAAAA
* *
71014697 TTCGAGTCAAGTCAAATCAAGTAAAA
1 TTCGAATCAAGTCAAATCAAATAAAA
71014723 TT
1 TT
71014725 ATTCGAGTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (26 bp):
TTCGAATCAAGTCAAATCAAATAAAA
Found at i:71021050 original size:2 final size:2
Alignment explanation
Indices: 71021043--71021086 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
71021033 TTTCATTACG
71021043 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
71021085 TA
1 TA
71021087 GGTATTTTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:71021607 original size:25 final size:26
Alignment explanation
Indices: 71021578--71021634 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
71021568 CTATCTCATG
71021578 TATATACTTCAAACACTATATATATA
1 TATATACTTCAAACACTATATATATA
* *
71021604 -ATATATTTCTAACACTATATATATA
1 TATATACTTCAAACACTATATATATA
71021629 TATATA
1 TATATA
71021635 TATATTTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 23 0.82
26 5 0.18
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (26 bp):
TATATACTTCAAACACTATATATATA
Found at i:71023334 original size:12 final size:12
Alignment explanation
Indices: 71023317--71023352 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
71023307 ATTCATTTGA
71023317 CATTCATGCATT
1 CATTCATGCATT
71023329 CATTCATGCATT
1 CATTCATGCATT
*
71023341 CATTCATACATT
1 CATTCATGCATT
71023353 GCATATCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:71031732 original size:71 final size:70
Alignment explanation
Indices: 71031633--71031808 Score: 221
Period size: 71 Copynumber: 2.5 Consensus size: 70
71031623 CTTTTCAAGG
* * *
71031633 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTT
1 AAAATCGACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTA
71031697 TGTTTT
65 TGTTTT
** * * *
71031703 CAAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTA
71031768 TGTTTT
65 TGTTTT
* * *
71031774 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCT
71031809 TTTAATTTGT
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
69 32 0.34
71 59 0.63
72 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (70 bp):
AAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTAT
GTTTT
Found at i:71032041 original size:191 final size:187
Alignment explanation
Indices: 71031633--71032152 Score: 567
Period size: 191 Copynumber: 2.7 Consensus size: 187
71031623 CTTTTCAAGG
* * ** * * *
71031633 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA----T
* * * * * * * * *
71031698 GTTTTCAAAATCGACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTA
62 -TTTT-AATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGACAAGGTAATTTCA
* ** * *
71031763 GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTGTGTTTTTC
125 ATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTCTTTTTC
*
71031826 AAAATCAGCCCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA-TTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* *
71031890 AATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTTT
66 AATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGACAAGGTAATTTCAATTTAT
*
71031955 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACTTTTTC
131 GTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTTCT-CTTTTTC
71032017 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA-----
* * * * *
71032082 GTGTTTTAATTTCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
61 -T-TTTTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGACAAGGTAATT
71032147 TCAATT
122 TCAATT
71032153 AAGCCTTTCA
Statistics
Matches: 279, Mismatches: 32, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
186 57 0.20
187 5 0.02
189 1 0.00
190 37 0.13
191 67 0.24
193 52 0.19
199 42 0.15
201 18 0.06
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (187 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
AATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGACAAGGTAATTTCAATTTAT
GTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTCTTTTTC
Found at i:71032069 original size:127 final size:126
Alignment explanation
Indices: 71031893--71032120 Score: 332
Period size: 127 Copynumber: 1.8 Consensus size: 126
71031883 CAATTTTAAT
71031893 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTTTGT-
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTTTGTG
* *
71031957 TTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAA
66 TT-TCAA-AATCAACTCATATTGCGAAAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAA
* * * * * *
71032020 ATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTTTGTG
* **
71032085 TTTTAATTTCAACTCATATTGCGAAAGGTGAGTTGA
66 TTTCAAAATCAACTCATATTGCGAAAGGTGAGTTGA
71032121 GCCTCAGGTC
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
126 26 0.29
127 61 0.69
128 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (126 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATAAGGTAATTTCAATTTTTGTG
TTTCAAAATCAACTCATATTGCGAAAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAAA
Found at i:71032291 original size:88 final size:88
Alignment explanation
Indices: 71032093--71032303 Score: 264
Period size: 88 Copynumber: 2.4 Consensus size: 88
71032083 TGTTTTAATT
*
71032093 TCAACTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTAAGCC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-CCGAGGTATTTTCAATTAAGCC
*
71032158 TTTCAATTTCTGTCTTTCAAAAAA
65 TTTCAATTTATGTCTTTCAAAAAA
* * * ** *
71032182 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGTCACA-CCGAGGTATTTTTTATTTCTG-T
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCCGAGGTA-TTTTCAATTAAGCC
* * * *
71032245 TTTCATTATTATGTTTTTGAAAGAA
65 TTTCAAT-TTATGTCTTTCAAAAAA
*
71032270 TCAACTCATATTGCGAGAGGTGAGTCGAGCCTCA
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
71032304 AGCCACGCGC
Statistics
Matches: 106, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
87 14 0.13
88 53 0.50
89 39 0.37
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Consensus pattern (88 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCCGAGGTATTTTCAATTAAGCCT
TTCAATTTATGTCTTTCAAAAAA
Done.