Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 249 of 427
Found at i:71032419 original size:55 final size:55
Alignment explanation
Indices: 71032332--71032462 Score: 219
Period size: 55 Copynumber: 2.4 Consensus size: 55
71032322 TTTTAGTTTA
*
71032332 TGTTTCAAAAATCAACTCATGTTGCGAGAGGTGAGTTAAGCCTGTTAATTTCTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAAAGGTGAGTTAAGCCTGTTAATTTCTGT
*
71032387 TGTTTCAAAAATCAACTCATGTTGCGAAAGGTGAGTTAAGCCTTTTAATTTCTGT
1 TGTTTCAAAAATCAACTCATGTTGCGAAAGGTGAGTTAAGCCTGTTAATTTCTGT
71032442 T-TTTCAAAAAAATCAACTCAT
1 TGTTTC--AAAAATCAACTCAT
71032463 ATTACGAGAG
Statistics
Matches: 72, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
54 4 0.06
55 54 0.75
56 14 0.19
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (55 bp):
TGTTTCAAAAATCAACTCATGTTGCGAAAGGTGAGTTAAGCCTGTTAATTTCTGT
Found at i:71034875 original size:25 final size:26
Alignment explanation
Indices: 71034846--71034902 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
71034836 CTATCTCATG
71034846 TATATACTTCAAACACTATATATATA
1 TATATACTTCAAACACTATATATATA
* *
71034872 -ATATATTTCTAACACTATATATATA
1 TATATACTTCAAACACTATATATATA
71034897 TATATA
1 TATATA
71034903 TTTTACATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 23 0.82
26 5 0.18
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (26 bp):
TATATACTTCAAACACTATATATATA
Found at i:71036353 original size:18 final size:18
Alignment explanation
Indices: 71036330--71036365 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
71036320 TTGTAAAACG
71036330 TTAATTTTGCAAAATATT
1 TTAATTTTGCAAAATATT
71036348 TTAATTTTGCAAAATATT
1 TTAATTTTGCAAAATATT
71036366 GATTAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
TTAATTTTGCAAAATATT
Found at i:71036553 original size:9 final size:10
Alignment explanation
Indices: 71036530--71036563 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
71036520 TACAAATTGG
71036530 TTTATTTATT
1 TTTATTTATT
71036540 TTTATTTATT
1 TTTATTTATT
*
71036550 TTATTTTTATT
1 TT-TATTTATT
71036561 TTT
1 TTT
71036564 TGTGATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTATTTATT
Found at i:71036554 original size:15 final size:14
Alignment explanation
Indices: 71036530--71036561 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
71036520 TACAAATTGG
71036530 TTTATTTATTTTTA
1 TTTATTTATTTTTA
71036544 TTTATTTTATTTTTA
1 TTTA-TTTATTTTTA
71036559 TTT
1 TTT
71036562 TTTGTGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTATTTTTA
Found at i:71036571 original size:21 final size:21
Alignment explanation
Indices: 71036534--71036579 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
71036524 AATTGGTTTA
*
71036534 TTTATTTTTATTTATTTTAT-T
1 TTTATTTTTATTGA-TTTATGT
71036555 TTTATTTTT-TGTGATTTATGT
1 TTTATTTTTAT-TGATTTATGT
71036576 TTTA
1 TTTA
71036580 GGTGTTTATG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (21 bp):
TTTATTTTTATTGATTTATGT
Found at i:71044135 original size:21 final size:21
Alignment explanation
Indices: 71044109--71044152 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
71044099 GCTTCGAGAG
*
71044109 CTATAATTAGCGATGAAGGAT
1 CTATAATTAACGATGAAGGAT
*
71044130 CTATAATTAATGATGAAGGAT
1 CTATAATTAACGATGAAGGAT
71044151 CT
1 CT
71044153 CACTTTGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (21 bp):
CTATAATTAACGATGAAGGAT
Found at i:71051406 original size:46 final size:46
Alignment explanation
Indices: 71051339--71051511 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
71051329 TAACCCGCCC
*
71051339 ATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
*
71051385 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCT
* * * * * * *
71051435 CT---CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
*
71051478 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
71051512 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
46 60 0.57
47 26 0.25
48 1 0.01
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCT
Found at i:71051459 original size:93 final size:93
Alignment explanation
Indices: 71051345--71051516 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
71051335 GCCCATAAGT
* * *
71051345 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71051410 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
71051438 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71051503 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
71051517 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71051531 original size:46 final size:44
Alignment explanation
Indices: 71051388--71051531 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
71051378 CGCATCTATA
* *
71051388 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
71051437 --CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
71051480 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
71051527 AGTGA
1 AGTGA
71051532 TATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.43
47 27 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:71063710 original size:79 final size:81
Alignment explanation
Indices: 71063609--71063793 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
71063599 ACGACTCGCT
** * *
71063609 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
71063672 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
71063689 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
71063753 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
71063769 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71063794 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:71063793 original size:40 final size:39
Alignment explanation
Indices: 71063602--71063793 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
71063592 GGATATAACG
* ** * *
71063602 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
71063642 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
71063682 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
71063721 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
71063761 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
71063794 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:71071758 original size:79 final size:81
Alignment explanation
Indices: 71071657--71071841 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
71071647 ACGACTCGCT
** * *
71071657 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
71071720 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
71071737 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
71071801 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
71071817 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71071842 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:71071841 original size:40 final size:39
Alignment explanation
Indices: 71071650--71071841 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
71071640 GGATATAACG
* ** * *
71071650 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
71071690 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
71071730 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
71071769 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
71071809 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
71071842 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:71082447 original size:58 final size:57
Alignment explanation
Indices: 71082347--71082467 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 57
71082337 ATATGAAAAA
71082347 GAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
** ***
71082404 GAAAGAAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAA-AAAAGAAAAAAAAATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
*
71082462 GGAAAA
1 GAAAAA
71082468 GGGGGAGGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
57 8 0.15
58 44 0.80
59 3 0.05
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (57 bp):
GAAAAAAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:71083723 original size:40 final size:40
Alignment explanation
Indices: 71083657--71083823 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
71083647 AAATTGAATA
* * *
71083657 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
71083696 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
71083736 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
71083776 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
71083816 ATATCCGG
1 ATATCCGG
71083824 TTACATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:71090297 original size:40 final size:40
Alignment explanation
Indices: 71090248--71090451 Score: 157
Period size: 40 Copynumber: 5.1 Consensus size: 40
71090238 CAGAATTTAA
** *
71090248 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* *
71090288 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * * *
71090328 CCGGATTTAGTAACTAGCACCAATGCCTTC-AGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * * **
71090367 CCGGA-ATTAGTAACTCACACGAATGCCTT-TGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * * *
71090407 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAAC
71090447 CCGGA
1 CCGGA
71090452 CATCATTCGA
Statistics
Matches: 134, Mismatches: 23, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
39 35 0.26
40 89 0.66
41 10 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:71090411 original size:79 final size:80
Alignment explanation
Indices: 71090295--71090451 Score: 185
Period size: 79 Copynumber: 2.0 Consensus size: 80
71090285 AGCCCGGTTA
* * *
71090295 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TAGCACCAATGCCTTC-
1 TAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCG
71090358 AGACTTAACCCGGAAT
65 AGACTTAACCCGGAAT
* * ** *
71090374 TAGTAACTCACACGAATGCCTT-TGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCG
* *
71090438 GGACTTAGCCCGGA
65 AGACTTAACCCGGA
71090452 CATCATTCGA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
78 3 0.05
79 45 0.69
80 17 0.26
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGA
GACTTAACCCGGAAT
Found at i:71095129 original size:40 final size:39
Alignment explanation
Indices: 71094939--71095122 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
71094929 CGAATGATGT
* * *
71094939 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
*
71094979 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
71095018 TTCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
71095059 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71095098 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71095123 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 34 0.27
40 83 0.66
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71101505 original size:57 final size:56
Alignment explanation
Indices: 71101407--71101547 Score: 142
Period size: 57 Copynumber: 2.5 Consensus size: 56
71101397 CCTCATTTTG
* * * * *
71101407 AAAAGGATTTAGCCCGGACGGGTAATCCTAATATAAGTCTTTCGAGCATATGTTATG
1 AAAAGGATTTAGCCCGGAC-TGTAATCCTAATATAACTCTTTAGAGCATATGTCATA
* * *
71101464 GAATGGATTTAGCCCGGACATGTAATCC-AGATCA-AACTCTTTAGAGTATATGTCATA
1 AAAAGGATTTAGCCCGGAC-TGTAATCCTA-AT-ATAACTCTTTAGAGCATATGTCATA
*
71101521 AAAAGGATTTAGCCTGGACTGGTAATC
1 AAAAGGATTTAGCCCGGACT-GTAATC
71101548 TTGACTAAGC
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
56 2 0.03
57 66 0.96
58 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (56 bp):
AAAAGGATTTAGCCCGGACTGTAATCCTAATATAACTCTTTAGAGCATATGTCATA
Found at i:71113572 original size:43 final size:43
Alignment explanation
Indices: 71113504--71113621 Score: 134
Period size: 43 Copynumber: 2.7 Consensus size: 43
71113494 ATATATCAAA
* * *
71113504 CAATGCCAACGTCCTAGACGTGGTCTTACATGCT-ATCTCA-TAT
1 CAATGCCAACATCCCAGACGTGGTCTTACATG-TAATCACAGT-T
***
71113547 CAATGCCATTGTCCCAGACAG-GGTCTTACATGTAATCACAGTT
1 CAATGCCAACATCCCAGAC-GTGGTCTTACATGTAATCACAGTT
71113590 CAATGCCAACATCCCAGACGTGGTCTTACATG
1 CAATGCCAACATCCCAGACGTGGTCTTACATG
71113622 AGAACACATA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.03
43 60 0.94
44 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (43 bp):
CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCACAGTT
Found at i:71113776 original size:14 final size:14
Alignment explanation
Indices: 71113757--71113797 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
71113747 TACATTCGAC
71113757 TTTCACATATATAA
1 TTTCACATATATAA
*
71113771 TTTCACATAATTTAA
1 TTTCACAT-ATATAA
71113786 TTTCAACATATA
1 TTTC-ACATATA
71113798 AGCTCATACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 8 0.35
15 11 0.48
16 4 0.17
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (14 bp):
TTTCACATATATAA
Found at i:71116027 original size:63 final size:64
Alignment explanation
Indices: 71115947--71116129 Score: 185
Period size: 63 Copynumber: 2.8 Consensus size: 64
71115937 AGACATTATG
* *
71115947 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACA-CATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
71116010 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
71116075 AA
63 AA
* * * *
71116077 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
71116130 CGAACTATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 39 0.40
64 5 0.05
65 6 0.06
66 18 0.19
67 26 0.27
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:71117219 original size:2 final size:2
Alignment explanation
Indices: 71117212--71117246 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
71117202 TCATGACATG
71117212 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
71117247 GACTAGTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:71119123 original size:40 final size:40
Alignment explanation
Indices: 71118957--71119124 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
71118947 CATTTGAATG
* * *
71118957 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
71118997 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
71119037 ATATCCGGGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
71119077 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
71119117 GTATCCGG
1 ATATCCGG
71119125 TTAAATCCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:71138317 original size:18 final size:18
Alignment explanation
Indices: 71138291--71138325 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71138281 ATGATATGCC
*
71138291 AAACTATTTTCATGCTTG
1 AAACCATTTTCATGCTTG
*
71138309 AAACCATTTTGATGCTT
1 AAACCATTTTCATGCTT
71138326 CCTGTTTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACCATTTTCATGCTTG
Found at i:71144294 original size:3 final size:3
Alignment explanation
Indices: 71144286--71144320 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
71144276 TTAAAAAGCT
71144286 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
71144321 AGAAAAAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:71145083 original size:25 final size:27
Alignment explanation
Indices: 71145050--71145102 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 27
71145040 ATTATTGTAT
71145050 TTTATAATTTAA-AATTTTTAAAT-TAA
1 TTTATAA-TTAATAATTTTTAAATATAA
*
71145076 TTTA-AATTAATACTTTTTAAATATAA
1 TTTATAATTAATAATTTTTAAATATAA
71145102 T
1 T
71145103 GAATTTACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.17
25 12 0.50
26 8 0.33
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
TTTATAATTAATAATTTTTAAATATAA
Found at i:71149719 original size:25 final size:25
Alignment explanation
Indices: 71149683--71149740 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
71149673 TAATTAGTAT
* * *
71149683 AAAATATT-AATAACTCAATAAATTG
1 AAAAT-TTAAATAACTAAATAAAATA
*
71149708 AAAATTTAAATAATTAAATAAAATA
1 AAAATTTAAATAACTAAATAAAATA
71149733 AAAATTTA
1 AAAATTTA
71149741 GGAGAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (25 bp):
AAAATTTAAATAACTAAATAAAATA
Found at i:71150439 original size:15 final size:16
Alignment explanation
Indices: 71150405--71150439 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
71150395 AATTTATTAA
*
71150405 AAATAAAATACTTATT
1 AAATAAAATACTTATC
71150421 AAATAAAATA-TTATC
1 AAATAAAATACTTATC
71150436 AAAT
1 AAAT
71150440 TTAAACTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATAAAATACTTATC
Found at i:71157295 original size:48 final size:49
Alignment explanation
Indices: 71157243--71157354 Score: 129
Period size: 50 Copynumber: 2.3 Consensus size: 49
71157233 TATCCCAGAT
* *
71157243 ATGGTCTTACATGTGATCAC-CA-CTCGATGCCAATGCCATGTTCCAAAC
1 ATGGTCTTACATG-GATCACACATCTCGATGCCAATACCATGTCCCAAAC
* * * *
71157291 ATGGTCTTACATGGAATCTCATATGTCGATGCCAATACCATGTCCCATAC
1 ATGGTCTTACATGG-ATCACACATCTCGATGCCAATACCATGTCCCAAAC
*
71157341 ATGGTTTTACATGG
1 ATGGTCTTACATGG
71157355 GATCTCATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 1 0.02
48 17 0.31
49 1 0.02
50 35 0.65
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (49 bp):
ATGGTCTTACATGGATCACACATCTCGATGCCAATACCATGTCCCAAAC
Found at i:71157332 original size:50 final size:50
Alignment explanation
Indices: 71157266--71157364 Score: 153
Period size: 50 Copynumber: 2.0 Consensus size: 50
71157256 TGATCACCAC
* *
71157266 TCGATGCCAATGCCATGTTCCAAACATGGTCTTACATGGAATCTCATATG
1 TCGATGCCAATACCATGTCCCAAACATGGTCTTACATGGAATCTCATATG
* * *
71157316 TCGATGCCAATACCATGTCCCATACATGGTTTTACATGGGATCTCATAT
1 TCGATGCCAATACCATGTCCCAAACATGGTCTTACATGGAATCTCATAT
71157365 CAATGCCATA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (50 bp):
TCGATGCCAATACCATGTCCCAAACATGGTCTTACATGGAATCTCATATG
Found at i:71161284 original size:30 final size:30
Alignment explanation
Indices: 71161250--71161308 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
71161240 CCTTAACTCA
71161250 AACTTTTGCAAAATTACAATTTTGCCCCTC
1 AACTTTTGCAAAATTACAATTTTGCCCCTC
* * *
71161280 AACTTTTGCATATTTACACTTTTGCCCCT
1 AACTTTTGCAAAATTACAATTTTGCCCCT
71161309 AGGCTCGGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTTGCAAAATTACAATTTTGCCCCTC
Found at i:71172354 original size:29 final size:29
Alignment explanation
Indices: 71172321--71172394 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
71172311 GTGACGAGAT
71172321 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
71172350 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
71172379 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
71172395 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:71172410 original size:29 final size:29
Alignment explanation
Indices: 71172378--71172453 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
71172368 CTGGAAATAT
* *
71172378 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
71172407 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
71172436 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
71172454 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:71172421 original size:58 final size:58
Alignment explanation
Indices: 71172321--71172453 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
71172311 GTGACGAGAT
* * * * * *
71172321 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
71172379 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
71172437 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
71172454 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:71179625 original size:24 final size:24
Alignment explanation
Indices: 71179595--71179877 Score: 456
Period size: 24 Copynumber: 12.1 Consensus size: 24
71179585 GAATGTGACT
* *
71179595 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
71179619 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179643 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179667 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179691 --A-T-AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71179711 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71179735 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71179759 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179783 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179807 ATAG--AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179829 ATAG--AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179851 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71179875 ATA
1 ATA
71179878 TGGTCTTTGC
Statistics
Matches: 250, Mismatches: 3, Indels: 12
0.94 0.01 0.05
Matches are distributed among these distances:
20 18 0.07
21 1 0.00
22 46 0.18
23 1 0.00
24 184 0.74
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:71179758 original size:92 final size:91
Alignment explanation
Indices: 71179601--71179877 Score: 443
Period size: 92 Copynumber: 3.0 Consensus size: 91
71179591 GACTATAGCA
* * *
71179601 AATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAG-GAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGC
71179666 CATAGTAAATCGCACACATAGTGCCAT
65 CATAGTAAATCGCACACATAGTGCCAT
71179693 AATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAG-GAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGC
*
71179758 CATAGTGAATCGCACACATAGTGCCATAGT
65 CATAGTAAATCGCACACATAGTGCC--A-T
71179788 AAATCGCACACATAGTGCCATA-GAATCGCACACATAGTGCCATA--GAATCGCACACATAGTGC
1 -AATCGCACACATAGTGCCATAGGAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGC
71179850 CATAGTAAATCGCACACATAGTGCCAT
65 CATAGTAAATCGCACACATAGTGCCAT
71179877 A
1 A
71179878 TGGTCTTTGC
Statistics
Matches: 175, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
88 1 0.01
89 1 0.01
90 1 0.01
92 127 0.73
94 23 0.13
95 1 0.01
96 21 0.12
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (91 bp):
AATCGCACACATAGTGCCATAGGAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCC
ATAGTAAATCGCACACATAGTGCCAT
Found at i:71179805 original size:116 final size:115
Alignment explanation
Indices: 71179601--71179877 Score: 484
Period size: 116 Copynumber: 2.4 Consensus size: 115
71179591 GACTATAGCA
* *
71179601 AATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
71179666 CATAGTAAATCGCACACATAGTGCCAT-AATCGCACACATAGTGCCATAGTG
66 CATAGTAAATCGCACACATAGTGCCATAAATCGCACACATAGTGCCATA--G
* *
71179717 AATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
71179782 CATAGTAAATCGCACACATAGTGCCATAGAATCGCACACATAGTGCCATAG
66 CATAGTAAATCGCACACATAGTGCCATA-AATCGCACACATAGTGCCATAG
71179833 AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATA
1 AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATA
71179878 TGGTCTTTGC
Statistics
Matches: 154, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
116 133 0.86
118 21 0.14
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (115 bp):
AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
CATAGTAAATCGCACACATAGTGCCATAAATCGCACACATAGTGCCATAG
Found at i:71187672 original size:24 final size:24
Alignment explanation
Indices: 71187642--71187812 Score: 297
Period size: 24 Copynumber: 7.1 Consensus size: 24
71187632 GAATGTGACT
* *
71187642 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
71187666 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71187690 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71187714 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71187738 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71187762 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71187786 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71187810 ATA
1 ATA
71187813 TGGTCTTTGC
Statistics
Matches: 143, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 143 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:71193085 original size:13 final size:14
Alignment explanation
Indices: 71193069--71193104 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
71193059 CAATCTCATA
71193069 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
71193082 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
71193095 TCTC-ATTTCA
1 TCTCAATTTCA
71193105 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:71193094 original size:18 final size:19
Alignment explanation
Indices: 71193056--71193096 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
71193046 TGGTTCATGT
71193056 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
71193075 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
71193093 TTTC
1 TTTC
71193097 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:71193286 original size:39 final size:38
Alignment explanation
Indices: 71193219--71193353 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
71193209 ACCAATATGG
* * *
71193219 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
71193258 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
71193296 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
71193337 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
71193354 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:71193619 original size:18 final size:19
Alignment explanation
Indices: 71193593--71193631 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
71193583 TTTCAATTCA
71193593 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
71193612 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
71193630 AT
1 AT
71193632 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:71194957 original size:5 final size:5
Alignment explanation
Indices: 71194947--71194999 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
71194937 TTACTTATTT
* *
71194947 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
71194995 ATATA
1 ATATA
71195000 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:71194963 original size:12 final size:12
Alignment explanation
Indices: 71194946--71195001 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
71194936 TTTACTTATT
71194946 TATATAATATAA
1 TATATAATATAA
71194958 TATATAATATAATA
1 TATATAATAT-A-A
71194972 TACTATAATATAA
1 TA-TATAATATAA
*
71194985 TA-ATAATTTAA
1 TATATAATATAA
71194996 TATATA
1 TATATA
71195002 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:71197009 original size:40 final size:40
Alignment explanation
Indices: 71196977--71197248 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
71196967 CCAGCATGAT
* * * *
71196977 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
71197017 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
71197057 TACTCTTTGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
71197097 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
71197137 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
71197177 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
71197217 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
71197249 CTCAATTCTC
Statistics
Matches: 216, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 216 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:71198579 original size:37 final size:37
Alignment explanation
Indices: 71198537--71198664 Score: 220
Period size: 37 Copynumber: 3.5 Consensus size: 37
71198527 ACGTGAAGTT
*
71198537 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
* *
71198574 TTCGGGTCTTACCCGGACATAATCTCCAGACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
71198611 ATCGGGTCTTACCCGGATATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
71198648 ATCGGGTCTTACCCGGA
1 ATCGGGTCTTACCCGGA
71198665 ATATATTTCC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.25
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:71198903 original size:98 final size:98
Alignment explanation
Indices: 71198797--71199124 Score: 548
Period size: 98 Copynumber: 3.3 Consensus size: 98
71198787 TGGCCACAAT
* *
71198797 ATATATATACACGTTCACATTCATCACATTGACCATTCGGCCTTATCACACATACGCATGTTCAC
1 ATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
71198862 ATTCATCACATTGGCCATTCGGCCTTATCACAC
66 ATTCATCACATTGGCCATTCGGCCTTATCACAC
*
71198895 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
1 ATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
71198960 ATTCATCACATTGGCCATTCGGCCTTATCACAC
66 ATTCATCACATTGGCCATTCGGCCTTATCACAC
* ***
71198993 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGT
1 ATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT----GT
*
71199058 TCACATTCATCACATTGGCCATTCGGCCTTATCACGC
62 TCACATTCATCACATTGGCCATTCGGCCTTATCACAC
71199095 ATATATATACAGGTTCACATTCATCACATT
1 ATATATATACAGGTTCACATTCATCACATT
71199125 AAATCCTAAA
Statistics
Matches: 218, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
98 151 0.69
102 67 0.31
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (98 bp):
ATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
ATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:71198928 original size:51 final size:51
Alignment explanation
Indices: 71198797--71199124 Score: 501
Period size: 51 Copynumber: 6.6 Consensus size: 51
71198787 TGGCCACAAT
** *
71198797 ATATATATACACGTTCACATTCATCACATTGACCATTCGGCCTTATCACAC
1 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
***
71198848 ATACGCAT----GTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
71198895 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
***
71198946 ATACGCAT----GTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
71198993 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
71199044 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGC
1 ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
*
71199095 ATATATATACAGGTTCACATTCATCACATT
1 ATATATATACGGGTTCACATTCATCACATT
71199125 AAATCCTAAA
Statistics
Matches: 254, Mismatches: 15, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
47 87 0.34
51 167 0.66
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (51 bp):
ATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:71199075 original size:149 final size:145
Alignment explanation
Indices: 71198809--71199097 Score: 497
Period size: 149 Copynumber: 2.0 Consensus size: 145
71198799 ATATATACAC
*
71198809 GTTCACATTCATCACATTGACCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GTTCACATTCATCACATTGACCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATT
71198874 GGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTT
66 GGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTT
71198939 ATCACACATACGCAT
131 ATCACACATACGCAT
* * *
71198954 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 GTTCACATTCATCACATTGACCATTCGGCCTTATCACACATACACAT----GTTCACATTCATCA
71199019 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
62 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
*
71199084 CCTTATCACGCATA
127 CCTTATCACACATA
71199098 TATATACAGG
Statistics
Matches: 135, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
145 43 0.32
149 92 0.68
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (145 bp):
GTTCACATTCATCACATTGACCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATT
GGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACGCAT
Found at i:71207300 original size:28 final size:28
Alignment explanation
Indices: 71207269--71207338 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
71207259 TACTCAATGC
* *
71207269 CTCGCACACTAAGTGTCATACTCGATAT
1 CTCGCACACTAAGTGCCACACTCGATAT
* *
71207297 CTCGCATACTAAGTGCCACATTCGATAT
1 CTCGCACACTAAGTGCCACACTCGATAT
71207325 CTCGCACACTAAGT
1 CTCGCACACTAAGT
71207339 ACTGTACATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
CTCGCACACTAAGTGCCACACTCGATAT
Found at i:71207390 original size:40 final size:40
Alignment explanation
Indices: 71207346--71207439 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
71207336 AGTACTGTAC
71207346 ATAGC-CAAAGCTATCTCAAATCACACACTAAATGCCATAT
1 ATAGCTCAAA-CTATCTCAAATCACACACTAAATGCCATAT
* * * * *
71207386 ATAGCTGAAACTATGTCGAATCGCACACTAAGTGCCATAT
1 ATAGCTCAAACTATCTCAAATCACACACTAAATGCCATAT
*
71207426 ATAGCTGAAACTAT
1 ATAGCTCAAACTAT
71207440 GTTGTATCGC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 45 0.94
41 3 0.06
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.24
Consensus pattern (40 bp):
ATAGCTCAAACTATCTCAAATCACACACTAAATGCCATAT
Found at i:71207440 original size:40 final size:40
Alignment explanation
Indices: 71207364--71207462 Score: 162
Period size: 40 Copynumber: 2.5 Consensus size: 40
71207354 AGCTATCTCA
* *
71207364 AATCACACACTAAATGCCATATATAGCTGAAACTATGTCG
1 AATCGCACACTAAGTGCCATATATAGCTGAAACTATGTCG
*
71207404 AATCGCACACTAAGTGCCATATATAGCTGAAACTATGTTG
1 AATCGCACACTAAGTGCCATATATAGCTGAAACTATGTCG
*
71207444 TATCGCACACTAAGTGCCA
1 AATCGCACACTAAGTGCCA
71207463 CAAATAACCG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (40 bp):
AATCGCACACTAAGTGCCATATATAGCTGAAACTATGTCG
Found at i:71211334 original size:20 final size:21
Alignment explanation
Indices: 71211300--71211353 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
71211290 TGATGATATT
*
71211300 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
71211321 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
71211341 TTTTATTATTTTA
1 TTATATTATTTTA
71211354 TTATTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:71211352 original size:8 final size:8
Alignment explanation
Indices: 71211339--71211377 Score: 51
Period size: 8 Copynumber: 4.5 Consensus size: 8
71211329 TTTAATGAGA
71211339 TATTTTAT
1 TATTTTAT
71211347 TATTTTAT
1 TATTTTAT
71211355 TATTTCATTAT
1 TA-TT--TTAT
71211366 TATTTTAT
1 TATTTTAT
71211374 TATT
1 TATT
71211378 AATTATTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 18 0.64
9 2 0.07
10 2 0.07
11 6 0.21
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (8 bp):
TATTTTAT
Found at i:71213859 original size:46 final size:45
Alignment explanation
Indices: 71213792--71213964 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
71213782 TGTAACCCGC
*
71213792 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
* * * *
71213838 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCAT
* * *
71213884 ACATTCA-CGAACTCGGACTCAACTCAAC-AGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
*
71213929 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
71213965 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 30 0.29
46 64 0.61
47 4 0.04
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCAT
Found at i:71213955 original size:91 final size:92
Alignment explanation
Indices: 71213799--71213968 Score: 306
Period size: 91 Copynumber: 1.9 Consensus size: 92
71213789 CGCCCATAAG
* *
71213799 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71213864 ACGAGTTCGGATGCCTAGTTACATTCA
66 ACGAGTTCGGATGCCTAGTTACATTCA
*
71213891 CGAACTCGGACTCAACTCAAC-AGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71213955 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71213969 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 54 0.72
92 21 0.28
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTCA
Found at i:71213984 original size:46 final size:46
Alignment explanation
Indices: 71213800--71213984 Score: 136
Period size: 46 Copynumber: 4.0 Consensus size: 46
71213790 GCCCATAAGC
* ** * *
71213800 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* *
71213846 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT
* * * *
71213892 GAACTCGGACTCAACTCAAC-AGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
71213937 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
71213983 GA
1 GA
71213985 CATGTCACTT
Statistics
Matches: 111, Mismatches: 13, Indels: 30
0.72 0.08 0.19
Matches are distributed among these distances:
44 10 0.09
45 31 0.28
46 60 0.54
47 5 0.05
48 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:71221397 original size:46 final size:45
Alignment explanation
Indices: 71221324--71221495 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
71221314 TGTAACCCGC
*
71221324 CCATAAGCGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
* * * * *
71221369 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG-GGCTTCGCAT
* * *
71221414 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCAT
*
71221460 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
71221496 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
44 1 0.01
45 47 0.45
46 54 0.52
47 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCAT
Found at i:71221439 original size:91 final size:91
Alignment explanation
Indices: 71221331--71221499 Score: 295
Period size: 91 Copynumber: 1.9 Consensus size: 91
71221321 CGCCCATAAG
* *
71221331 CGAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71221396 CGAGTTC-GATGCCTAGTTACATTCA
66 CGAGTTCGGATGCCTAGTTACATTCA
*
71221421 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTC-GACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71221486 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
71221500 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
90 7 0.09
91 62 0.84
92 5 0.07
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
CGAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCA
Found at i:71221515 original size:46 final size:46
Alignment explanation
Indices: 71221332--71221515 Score: 127
Period size: 46 Copynumber: 4.0 Consensus size: 46
71221322 GCCCATAAGC
* ** * *
71221332 GAACTC-GACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* *
71221377 GAACTCGGACTCAACTCAACGAGTTC-GATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT
* * * *
71221422 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
71221468 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
71221514 GA
1 GA
71221516 CATGTCACTT
Statistics
Matches: 110, Mismatches: 13, Indels: 31
0.71 0.08 0.20
Matches are distributed among these distances:
44 10 0.09
45 35 0.32
46 56 0.51
48 4 0.04
49 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:71223867 original size:46 final size:46
Alignment explanation
Indices: 71223814--71224353 Score: 877
Period size: 46 Copynumber: 11.7 Consensus size: 46
71223804 AGTGTGCTCT
*
71223814 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
71223860 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATAGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
71223906 CTGATATGAAATGTGTAAGACCATGTTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
71223952 TTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
71223998 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
71224044 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
71224090 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
71224136 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
71224182 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
71224228 CTGATATGAAATGTG-ACAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTA-AGACCATGGTTGAAAGATACCATGGCAAC
* ***
71224274 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
71224320 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
71224354 CACTATAGCA
Statistics
Matches: 466, Mismatches: 25, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
45 2 0.00
46 463 0.99
47 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:71230277 original size:37 final size:40
Alignment explanation
Indices: 71230236--71230322 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 40
71230226 TAAAATTATA
* *
71230236 TTTAATACAATAAAA-AATTATTATTTTTAT-TTA-TGTT
1 TTTAATACAATAAAACAATTATTATATTTATGGTAGTGTT
* *
71230273 TTTAATATAATAAAACATTTATTATATTTATGGTAGTGTT
1 TTTAATACAATAAAACAATTATTATATTTATGGTAGTGTT
71230313 TTTAATACAA
1 TTTAATACAA
71230323 ATAATTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
37 14 0.33
38 13 0.31
39 2 0.05
40 13 0.31
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (40 bp):
TTTAATACAATAAAACAATTATTATATTTATGGTAGTGTT
Found at i:71231090 original size:15 final size:16
Alignment explanation
Indices: 71231072--71231104 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
71231062 TATATTTTTT
71231072 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
71231087 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
71231104 T
1 T
71231105 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:71231208 original size:20 final size:22
Alignment explanation
Indices: 71231152--71231209 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
71231142 TTTTAAGAAT
*
71231152 TGTTTTAGTAT-TATTTTTATC
1 TGTTTTAATATATATTTTTATC
* *
71231173 TGTTTTAATATTTATTTTTATG
1 TGTTTTAATATATATTTTTATC
71231195 T-TTTTAA-ATATATTT
1 TGTTTTAATATATATTT
71231210 GATTTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.48
22 10 0.30
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (22 bp):
TGTTTTAATATATATTTTTATC
Found at i:71231226 original size:26 final size:24
Alignment explanation
Indices: 71231180--71231239 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
71231170 ATCTGTTTTA
*
71231180 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
71231204 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
71231230 TTTTTTATTT
1 ATATTTATTT
71231240 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:71231435 original size:16 final size:16
Alignment explanation
Indices: 71231392--71231438 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
71231382 ATTTTATTTG
* *
71231392 GGCCCGGCCCGAACCC
1 GGCCCAGCCCGGACCC
71231408 GGCCCAGCCCGGACCC
1 GGCCCAGCCCGGACCC
71231424 GGCCCAGCCCGGACC
1 GGCCCAGCCCGGACC
71231439 ATGATCACCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.13, C:0.55, G:0.32, T:0.00
Consensus pattern (16 bp):
GGCCCAGCCCGGACCC
Found at i:71240706 original size:19 final size:19
Alignment explanation
Indices: 71240682--71240722 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
71240672 TTAAATTGTT
*
71240682 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
71240701 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
71240720 TTA
1 TTA
71240723 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:71242766 original size:39 final size:39
Alignment explanation
Indices: 71242710--71242883 Score: 294
Period size: 39 Copynumber: 4.5 Consensus size: 39
71242700 TTATATGATT
71242710 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
71242749 TGGTGTTATATCTGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
71242788 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* * *
71242827 TGGTGTTATATCCGGGCTAAGACCCGAAAGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
71242866 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
71242884 TAAAGTCCCG
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 128 1.00
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:71243867 original size:68 final size:68
Alignment explanation
Indices: 71243758--71243904 Score: 285
Period size: 68 Copynumber: 2.2 Consensus size: 68
71243748 CTTGTAGTGA
*
71243758 ATTTGTGATTTTGTTGCGAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
1 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
71243823 CTT
66 CTT
71243826 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
1 ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
71243891 CTT
66 CTT
71243894 ATTTGTGATTT
1 ATTTGTGATTT
71243905 CAATATTTGG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 78 1.00
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.47
Consensus pattern (68 bp):
ATTTGTGATTTTGTTGCAAACATGGTTAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGAT
CTT
Found at i:71251160 original size:2 final size:2
Alignment explanation
Indices: 71251153--71251180 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
71251143 CTTAGTAATA
71251153 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71251181 CTTATAAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71251666 original size:41 final size:41
Alignment explanation
Indices: 71251604--71251793 Score: 267
Period size: 41 Copynumber: 4.7 Consensus size: 41
71251594 TTGGGGTTTA
*
71251604 AATCCGAGCTTGGTCTTGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
71251645 AATCAGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
71251686 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * * *
71251727 GA-CCGAACCTAGTTTCGAA-GGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
71251766 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
71251794 TGAGTCAGCG
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 17 0.13
40 26 0.20
41 85 0.66
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:71251783 original size:80 final size:82
Alignment explanation
Indices: 71251604--71251793 Score: 267
Period size: 80 Copynumber: 2.3 Consensus size: 82
71251594 TTGGGGTTTA
* * * *
71251604 AATCCGAGCTTGGTCTTGAAGGGCTTTTGAGCCAGTGTCATAATCAGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCAGAACCTAGTCTCGAAGGGC
* * *
71251669 TTTTGAGCCAGTGTCAT
66 CTTCGAGCCAATGTCAT
* * *
71251686 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATGA-CCGAACCTAGTTTCGAA-GGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCAGAACCTAGTCTCGAAGGGC
*
71251749 CTTCGGGCCAATGTCAT
66 CTTCGAGCCAATGTCAT
71251766 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
71251794 TGAGTCAGCG
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 44 0.45
81 12 0.12
82 41 0.42
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (82 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCAGAACCTAGTCTCGAAGGGC
CTTCGAGCCAATGTCAT
Found at i:71254374 original size:25 final size:26
Alignment explanation
Indices: 71254330--71254391 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
71254320 GATCCTTCAT
71254330 ATTTTTCTTATGAGAGTTGT-T-TTGGG
1 ATTTTT-TTATGAGAGTTGTATCTT-GG
*
71254356 ATTTTTATTATGATA-TTGTATCTTGG
1 ATTTTT-TTATGAGAGTTGTATCTTGG
71254382 ATTTTTTTAT
1 ATTTTTTTAT
71254392 CTTGGATTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 8 0.25
26 22 0.69
27 2 0.06
ACGTcount: A:0.19, C:0.03, G:0.18, T:0.60
Consensus pattern (26 bp):
ATTTTTTTATGAGAGTTGTATCTTGG
Found at i:71256147 original size:42 final size:42
Alignment explanation
Indices: 71256068--71256147 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
71256058 ATCGGTATGT
* **
71256068 GATTTCATGTAAGACCATATCTAGGATATGGCGTTGATATTA
1 GATTTCATGTAAGACCATATCTAGGACATGGAATTGATATTA
* * *
71256110 GATTTCGTGTAAGACCATGTCTGGGACATGGAATTGAT
1 GATTTCATGTAAGACCATATCTAGGACATGGAATTGAT
71256148 GCGGGGCCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (42 bp):
GATTTCATGTAAGACCATATCTAGGACATGGAATTGATATTA
Found at i:71263706 original size:48 final size:48
Alignment explanation
Indices: 71263603--71263732 Score: 136
Period size: 48 Copynumber: 2.7 Consensus size: 48
71263593 ATGGGAGCTT
* * *
71263603 GTGTAAAAATATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCA
1 GTGTAAGACTATGTCTGGGACATGGCATCGGCATTGATACGAGAGCCA
* * * *
71263651 GTATAAGACTATGTCTGGGACATGGCATCGGCGTTGATACGTA-TGCTA
1 GTGTAAGACTATGTCTGGGACATGGCATCGGCATTGATACG-AGAGCCA
* * * * *
71263699 GTGTAAGACCATATCTGGGATATGGAATCAGCAT
1 GTGTAAGACTATGTCTGGGACATGGCATCGGCAT
71263733 CAGTATGTGA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 66 0.99
49 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (48 bp):
GTGTAAGACTATGTCTGGGACATGGCATCGGCATTGATACGAGAGCCA
Found at i:71266513 original size:40 final size:40
Alignment explanation
Indices: 71266454--71266637 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
71266444 TATTCGAATG
* * *
71266454 ATATCTGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
71266494 ATATCTGGACTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
71266534 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * *
71266574 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
71266614 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
71266638 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:71266587 original size:80 final size:79
Alignment explanation
Indices: 71266454--71266673 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 79
71266444 TATTCGAATG
* * * * * *
71266454 ATATCTGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCTGGACTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
* *
71266519 TTTGTGCGAGTTG-CT
65 TTTATGCGAG-TGACC
* * *
71266534 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCAAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
*
71266599 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * *
71266614 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGA-CCCGAAG
71266674 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
78 12 0.10
79 19 0.16
80 88 0.74
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TTATGCGAGTGACC
Found at i:71268779 original size:17 final size:18
Alignment explanation
Indices: 71268757--71268790 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71268747 CACATTGAAG
71268757 TGTTTT-ATTGAAAACCT
1 TGTTTTCATTGAAAACCT
71268774 TGTTTTCATTGAAAACC
1 TGTTTTCATTGAAAACC
71268791 CTTCTTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (18 bp):
TGTTTTCATTGAAAACCT
Found at i:71270048 original size:28 final size:28
Alignment explanation
Indices: 71270007--71270108 Score: 159
Period size: 28 Copynumber: 3.6 Consensus size: 28
71269997 GGCCCCTTTT
* *
71270007 GGCCCAATCTCATTCATATGGCCCATCG
1 GGCCCAATCACATTCATATGGCCCATCA
71270035 GGCCCAATCACATTCATATGGCCCATCA
1 GGCCCAATCACATTCATATGGCCCATCA
* * *
71270063 GGCCCAATAACTTTCATATTGCCCATCA
1 GGCCCAATCACATTCATATGGCCCATCA
71270091 GGCCCAATCACATTCATA
1 GGCCCAATCACATTCATA
71270109 GTCATGCAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.25
Consensus pattern (28 bp):
GGCCCAATCACATTCATATGGCCCATCA
Found at i:71270346 original size:16 final size:16
Alignment explanation
Indices: 71270322--71270358 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
71270312 GTAGCCAAAC
*
71270322 TTTCGGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
71270338 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
71270354 TTTCA
1 TTTCA
71270359 TGATTTGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.24, G:0.16, T:0.46
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:71275612 original size:40 final size:40
Alignment explanation
Indices: 71275375--71275598 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
71275365 TCGAATGATG
* * * *
71275375 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
**
71275415 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
71275454 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71275493 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
71275533 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
71275574 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
71275599 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
37 1 0.01
38 31 0.18
39 5 0.03
40 121 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71280381 original size:40 final size:39
Alignment explanation
Indices: 71280294--71280514 Score: 268
Period size: 40 Copynumber: 5.6 Consensus size: 39
71280284 TATTCGAATG
* *
71280294 ATATCCGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGTCT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTG-CT
71280333 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTG-CT
* *
71280373 ATACCCGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGCT
** *
71280413 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTG-CT
* * *
71280453 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGCT
*
71280493 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
71280515 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 42 0.26
40 114 0.71
41 5 0.03
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGCT
Found at i:71280430 original size:80 final size:79
Alignment explanation
Indices: 71280298--71280514 Score: 312
Period size: 80 Copynumber: 2.7 Consensus size: 79
71280288 CGAATGATAT
* * *
71280298 CCGGGCTAAGTCCCGAAGGCATGGTGCTAG-TGTCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTTG
*
71280362 TGCTATTGACTATAC
65 TGCTAGTGACTATAC
**
71280377 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTG
*
71280442 TGCTAGTGACTATAT
65 TGCTAGTGACTATAC
* *
71280457 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
71280515 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 35 0.28
80 89 0.71
81 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGT
GCTAGTGACTATAC
Found at i:71287632 original size:6 final size:6
Alignment explanation
Indices: 71287602--71287732 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
71287592 AAGAAACATT
* *
71287602 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
71287649 GTGACAGA ATCAGA ATCAGA ATAAGA ATCAGA ATTAGGTG AT-AGA ATCAAA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
71287700 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71287733 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 17, Indels: 22
0.71 0.12 0.16
Matches are distributed among these distances:
5 6 0.06
6 78 0.80
7 9 0.09
8 4 0.04
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:71287658 original size:19 final size:19
Alignment explanation
Indices: 71287634--71287704 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
71287624 GAATCAGAAT
71287634 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
*
71287653 CAGAATCAGAATCAGAAT-A
1 CAGAATCAGAATCAG-GTGA
*
71287672 -AGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGGTGA
* *
71287690 TAGAATCAAAATCAG
1 CAGAATCAGAATCAG
71287705 TATCAGGTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.02
18 14 0.32
19 28 0.64
20 1 0.02
ACGTcount: A:0.48, C:0.13, G:0.21, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:71287666 original size:37 final size:37
Alignment explanation
Indices: 71287623--71287710 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
71287613 AATCAAAATG
71287623 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
* * *
71287660 AGAATCAGAATAAGAATCAGAATTAGGTGATAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
* *
71287697 AAAATCAGTATCAG
1 AGAATCAGAATCAG
71287711 GTAACAGAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.48, C:0.12, G:0.20, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:71287923 original size:27 final size:26
Alignment explanation
Indices: 71287852--71287950 Score: 99
Period size: 27 Copynumber: 3.7 Consensus size: 26
71287842 CATGGCTGCC
* *
71287852 AGAACAGATATTGTGGCAGAGTCACT
1 AGAAAAGATATTGTGGCAGAGCCACT
* * *
71287878 AGATACATATATTGCGGCAGAGCCACT
1 AGA-AAAGATATTGTGGCAGAGCCACT
* *
71287905 AGAAAAGATATTTGTGGCATAGCCACC
1 AGAAAAGATA-TTGTGGCAGAGCCACT
*
71287932 AGAAACAGATAATGTGGCA
1 AGAAA-AGATATTGTGGCA
71287951 AAGAAACTTA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 8 0.13
27 48 0.79
28 5 0.08
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (26 bp):
AGAAAAGATATTGTGGCAGAGCCACT
Found at i:71288141 original size:22 final size:22
Alignment explanation
Indices: 71288116--71288180 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
71288106 GCAAATAAGT
*
71288116 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
71288138 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
71288160 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
71288181 AATAATTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:71288618 original size:26 final size:26
Alignment explanation
Indices: 71288561--71288690 Score: 125
Period size: 27 Copynumber: 4.8 Consensus size: 26
71288551 CAAAATGGTA
* * *
71288561 ATTTTACCCCACAAAGGGTATCTCGGT
1 ATTTTACCCTAC-AGGGGTATTTCGGT
* **
71288588 AATTTTACCCTAGAGGGGTATTTTAGT
1 -ATTTTACCCTACAGGGGTATTTCGGT
*
71288615 ATTTCTACCCTACAAGGGTATTTCGGT
1 ATTT-TACCCTACAGGGGTATTTCGGT
* *
71288642 AATTCTACCCTACAGTGGTATTTCGGT
1 -ATTTTACCCTACAGGGGTATTTCGGT
* *
71288669 AATATACCCTACAGGGGTATTT
1 ATTTTACCCTACAGGGGTATTT
71288691 TGATAATTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 23 0.27
27 48 0.57
28 13 0.15
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (26 bp):
ATTTTACCCTACAGGGGTATTTCGGT
Found at i:71288623 original size:27 final size:27
Alignment explanation
Indices: 71288576--71288690 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
71288566 ACCCCACAAA
* *
71288576 GGGTATCTCGGTAATTT-TACCCTAGAG
1 GGGTATTTCGGT-ATTTCTACCCTACAG
** *
71288603 GGGTATTTTAGTATTTCTACCCTACAA
1 GGGTATTTCGGTATTTCTACCCTACAG
*
71288630 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTATTTCTACCCTACAG
* * *
71288657 TGGTATTTCGGTA-ATATACCCTACAG
1 GGGTATTTCGGTATTTCTACCCTACAG
71288683 GGGTATTT
1 GGGTATTT
71288691 TGATAATTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
26 22 0.30
27 52 0.70
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTATTTCTACCCTACAG
Found at i:71288641 original size:54 final size:53
Alignment explanation
Indices: 71288561--71288700 Score: 154
Period size: 54 Copynumber: 2.6 Consensus size: 53
71288551 CAAAATGGTA
* * * *
71288561 ATTTTACCCCACAAAGGGTATCTCGGTAATTTTACCCTAGAGGGGTATTTTAGT
1 ATTTTACCCTAC-AAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAGT
* * *
71288615 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGTGGTATTTCGGT
1 ATTT-TACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAGT
* * * * *
71288669 AATATACCCTACAGGGGTATTTTGATAATTTT
1 ATTTTACCCTACAAGGGTATTTCGGTAATTTT
71288701 GTAAATTGAG
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
53 24 0.33
54 41 0.57
55 7 0.10
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (53 bp):
ATTTTACCCTACAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTCAGT
Found at i:71288749 original size:27 final size:27
Alignment explanation
Indices: 71288683--71288915 Score: 177
Period size: 27 Copynumber: 8.6 Consensus size: 27
71288673 TACCCTACAG
* * *
71288683 GGGTATTTTGATAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTATAAATCGA
**** *
71288710 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
* * *
71288737 GAGTATTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
** **
71288764 GGGTATTTCAGTAATTTTATAGGTCGA
1 GGGTATTTTGGTAATTTTATAAATCGA
** * *
71288791 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTATAAATCGA
* *
71288817 GGGGTATTTTGGTAATTTTACAAA-CTAA
1 -GGGTATTTTGGTAATTTTATAAATC-GA
* * *
71288845 GGGTATTTTGGTAATTTCACAAA-CTA
1 GGGTATTTTGGTAATTTTATAAATCGA
*
71288871 GGGGTATTTTGGTAATTTTGCT-AATCGA
1 -GGGTATTTTGGTAATTTT-ATAAATCGA
71288899 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
71288916 GGTAAACTAA
Statistics
Matches: 168, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 162 0.96
28 3 0.02
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAATCGA
Found at i:71288778 original size:54 final size:53
Alignment explanation
Indices: 71288719--71288915 Score: 202
Period size: 54 Copynumber: 3.7 Consensus size: 53
71288709 AGGGTAAAAC
* * * *
71288719 GGTAATTTTGTAAATCGAGAGTATTTTGGTAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTATAAATCGAGGGTATTTTGGTAATTTCACAA-TCAG-GGGTATTTT
* ** **
71288773 AGTAATTTTATAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTATAAATCGAGGGTATTTTGGTAATTTCAC-AATCAGGGGTATTTT
* * *
71288827 GGTAATTTTACAAA-CTAAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTT
1 GGTAATTTTATAAATC-GAGGGTATTTTGGTAATTTCACAATC-AGGGGTATTTT
*
71288881 GGTAATTTTGCT-AATCGAGGGTATTTTGGTAATTT
1 GGTAATTTT-ATAAATCGAGGGTATTTTGGTAATTT
71288916 GGTAAACTAA
Statistics
Matches: 117, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
53 4 0.03
54 109 0.93
55 4 0.03
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (53 bp):
GGTAATTTTATAAATCGAGGGTATTTTGGTAATTTCACAATCAGGGGTATTTT
Found at i:71291877 original size:26 final size:26
Alignment explanation
Indices: 71291848--71291903 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
71291838 TGATAAAAAT
71291848 TGATAATGGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCAA
*
71291874 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCAA
71291900 TGAT
1 TGAT
71291904 GGGCATTCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCAA
Found at i:71300497 original size:43 final size:42
Alignment explanation
Indices: 71300434--71300597 Score: 186
Period size: 42 Copynumber: 3.9 Consensus size: 42
71300424 TACCGTACCA
* * **
71300434 ATGCCATATCCTATATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * *
71300476 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATCTCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
* * *
71300519 ATGCCATATCCTAGATATGGTCTTACATGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* *
71300561 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
71300598 GTAACCCTAA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
42 70 0.69
43 32 0.31
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:71300564 original size:85 final size:84
Alignment explanation
Indices: 71300434--71300597 Score: 247
Period size: 85 Copynumber: 1.9 Consensus size: 84
71300424 TACCGTACCA
* ** *
71300434 ATGCCATATCCTATATATGGTCTTACATGTAATCTTGTATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCGATGCC-ATAGCCCAGATATGGTC
71300499 TTACACGAAGTCTCATCTCG
65 TTACACGAAGTCTCATCTCG
* * *
71300519 ATGCCATATCCTAGATATGGTCTTACATGTAGTCTCATATTGATGCCATATCCCAGATATGGTCT
1 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCGATGCCATAGCCCAGATATGGTCT
*
71300584 TACACGTAGTCTCA
66 TACACGAAGTCTCA
71300598 GTAACCCTAA
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 29 0.41
85 42 0.59
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (84 bp):
ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCGATGCCATAGCCCAGATATGGTCT
TACACGAAGTCTCATCTCG
Found at i:71302309 original size:21 final size:21
Alignment explanation
Indices: 71302285--71302324 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
71302275 TGACTTCTAT
71302285 CAATC-TGAAGCTACTTTCAAA
1 CAATCATGAA-CTACTTTCAAA
*
71302306 CAATCATGAATTACTTTCA
1 CAATCATGAACTACTTTCA
71302325 CTTTTTCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.33
Consensus pattern (21 bp):
CAATCATGAACTACTTTCAAA
Found at i:71306755 original size:20 final size:20
Alignment explanation
Indices: 71306730--71306767 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
71306720 GACTAAACTG
71306730 AGAACTTAAGAAAATTTTAC
1 AGAACTTAAGAAAATTTTAC
*
71306750 AGAACTTAGGAAAATTTT
1 AGAACTTAAGAAAATTTT
71306768 CACTAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (20 bp):
AGAACTTAAGAAAATTTTAC
Found at i:71308066 original size:85 final size:84
Alignment explanation
Indices: 71307961--71308123 Score: 211
Period size: 85 Copynumber: 1.9 Consensus size: 84
71307951 GTGCCGTACC
* * *
71307961 AATGCCATATCCTAAATATGGTCTTAC-CTGTAATCTCGTATCAATGCCAATAGCCCAGCTATGG
1 AATGCCATATCCCAAATATGGTCTTACAC-GTAATCTCATATCAATG-CAATAGCCCAGATATGG
71308025 TCTTACATGAAGTCTCATATT
64 TCTTACATGAAGTCTCATATT
* * ** * *
71308046 AATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATTGATGCAATATCCTAGATATGGTC
1 AATGCCATATCCCAAATATGGTCTTACACGTAATCTCATATCAATGCAATAGCCCAGATATGGTC
*
71308111 TTACATGTAGTCT
66 TTACATGAAGTCT
71308124 TAGTAGCCCT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 28 0.42
85 38 0.57
86 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (84 bp):
AATGCCATATCCCAAATATGGTCTTACACGTAATCTCATATCAATGCAATAGCCCAGATATGGTC
TTACATGAAGTCTCATATT
Found at i:71308073 original size:42 final size:42
Alignment explanation
Indices: 71307961--71308123 Score: 184
Period size: 42 Copynumber: 3.9 Consensus size: 42
71307951 GTGCCGTACC
* * * * *
71307961 AATGCCATATCCTAAATATGGTCTTACCTGTAA-TCTCGTATC
1 AATGCCATATCCCAGATATGGTCTTACATG-AAGTCTCATATT
* *
71308003 AATGCCAATAGCCCAGCTATGGTCTTACATGAAGTCTCATATT
1 AATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATT
* *
71308046 AATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATT
1 AATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATT
* * * *
71308088 GATGCAATATCCTAGATATGGTCTTACATGTAGTCT
1 AATGCCATATCCCAGATATGGTCTTACATGAAGTCT
71308124 TAGTAGCCCT
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 72 0.69
43 32 0.31
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (42 bp):
AATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATT
Found at i:71313778 original size:51 final size:49
Alignment explanation
Indices: 71313627--71313814 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 49
71313617 TGAGGTCACG
* *
71313627 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCGGATAGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
* * * ** * ***
71313676 CGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCAATAACTTCGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GGTCGCA
* *
71313727 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
* * *
71313776 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATA
71313815 GCTTTGGCTA
Statistics
Matches: 110, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
49 70 0.64
50 4 0.04
51 36 0.33
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
Found at i:71313801 original size:100 final size:100
Alignment explanation
Indices: 71313626--71313809 Score: 305
Period size: 100 Copynumber: 1.8 Consensus size: 100
71313616 GTGAGGTCAC
* * *
71313626 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCGGATAGTTGGTCGCACGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCACGTGTAGTACTAAGT
* *
71313691 GCAGGTTACTATGCGTACCCAATAACTTCGATCAT
66 ACAGGCTACTATGCGTACCCAATAACTTCGATCAT
* *
71313726 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCACGTGTAGTACTAAGT
71313791 ACAGGCTACTATGCGTACC
66 ACAGGCTACTATGCGTACC
71313810 AGATAGCTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCACGTGTAGTACTAAGT
ACAGGCTACTATGCGTACCCAATAACTTCGATCAT
Found at i:71315262 original size:27 final size:27
Alignment explanation
Indices: 71315227--71315284 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
71315217 ACCCTCTAAT
* *
71315227 TGATCAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTACG
71315254 TGATAAAATGACTATTATGCCCCTACG
1 TGATAAAATGACTATTATGCCCCTACG
71315281 TGAT
1 TGAT
71315285 GTATGACTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.33
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTACG
Found at i:71317048 original size:29 final size:29
Alignment explanation
Indices: 71316986--71317088 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
71316976 TACTCGATTT
**** * *
71316986 CGCACACTTAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
71317015 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
71317044 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
71317073 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71317089 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:71324891 original size:29 final size:29
Alignment explanation
Indices: 71324829--71324931 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
71324819 TACTCGATTT
**** * *
71324829 CGCACACTTAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
71324858 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
71324887 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
71324916 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
71324932 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:71327168 original size:28 final size:28
Alignment explanation
Indices: 71327103--71327174 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 28
71327093 ATAGTGAATC
*
71327103 CGCACACTTAGTGCTATATGTATTCAACT
1 CGCACACTTAGTGCTATA-GTAATCAACT
71327132 CGCACACTTAGTGCTATA-TAATCAAACT
1 CGCACACTTAGTGCTATAGTAATC-AACT
71327160 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71327175 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 4 0.10
28 19 0.46
29 18 0.44
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGTAATCAACT
Found at i:71327196 original size:30 final size:28
Alignment explanation
Indices: 71327102--71327199 Score: 90
Period size: 28 Copynumber: 3.4 Consensus size: 28
71327092 TATAGTGAAT
* *
71327102 CCGCACACTTAGTGCTATATGTATTC-AAC
1 CCGCACACTTAGTGCTATA--CAATCAAAC
* *
71327131 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * *
71327159 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATACAA--TCAAAC
71327189 CCGCACACTTA
1 CCGCACACTTA
71327200 ATGCCAATCT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 4 0.07
28 23 0.38
29 18 0.30
30 15 0.25
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:71328978 original size:93 final size:93
Alignment explanation
Indices: 71328866--71329037 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71328856 GCCCATAAGT
* *
71328866 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71328931 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71328959 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71329024 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
71329038 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71329033 original size:46 final size:46
Alignment explanation
Indices: 71328858--71329033 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71328848 TGTAACCCGC
* * *
71328858 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
71328904 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
71328954 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
71328997 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71329034 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:71331451 original size:30 final size:29
Alignment explanation
Indices: 71331407--71331494 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 29
71331397 CAAAGATAAC
71331407 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAAACCGAATAAAGAAATCCAAGATA
* *
71331436 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAAACC-GAATAAAGAAATCCAAG-ATA
* * *
71331466 AAGAGATCC-AGATAAAGAAACCCAAGATA
1 AAGAAAACCGA-ATAAAGAAATCCAAGATA
71331495 CGATACTATG
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
28 1 0.02
29 23 0.47
30 25 0.51
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAAACCGAATAAAGAAATCCAAGATA
Found at i:71331482 original size:14 final size:15
Alignment explanation
Indices: 71331407--71331485 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
71331397 CAAAGATAAC
*
71331407 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71331421 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
71331436 GAGAAACCCGGAATA
1 AAGAAATCCAGAATA
71331451 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
71331466 AAGAGATCCAG-ATA
1 AAGAAATCCAGAATA
71331480 AAGAAA
1 AAGAAA
71331486 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
14 17 0.32
15 35 0.66
16 1 0.02
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71334555 original size:93 final size:93
Alignment explanation
Indices: 71334443--71334614 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
71334433 GCCCATAAGT
* *
71334443 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71334508 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71334536 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71334601 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
71334615 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71334610 original size:46 final size:46
Alignment explanation
Indices: 71334435--71334610 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
71334425 TGTAACCCGC
* * *
71334435 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* * *
71334481 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
71334531 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
71334574 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71334611 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 67 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:71338306 original size:23 final size:22
Alignment explanation
Indices: 71338270--71338446 Score: 124
Period size: 23 Copynumber: 7.8 Consensus size: 22
71338260 GGACTCACCA
* *
71338270 CAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCAT-AGAGCTTACTGATT
* *
71338293 CAGCTCATTGGAGCTTACCGATT
1 CAGCTCA-TAGAGCTTACTGATT
* *
71338316 CAGCTCGAAAGAGCTTACTGTTT
1 CAGCTC-ATAGAGCTTACTGATT
* * * *
71338339 CAGCTAATTGGAGTTTACCGATT
1 CAGCTCA-TAGAGCTTACTGATT
*
71338362 CAGCTCGAAAGAGCTTACTG-TT
1 CAGCTC-ATAGAGCTTACTGATT
* *
71338384 CAACTCAATAGAGCTTACAGATT
1 CAGCTC-ATAGAGCTTACTGATT
* *
71338407 CAGCTTGAAAGAGCTTACTG-TT
1 CAGC-TCATAGAGCTTACTGATT
*
71338429 CAGCTCAATAGAGATTAC
1 CAGCTC-ATAGAGCTTAC
71338447 CATTTCCAGT
Statistics
Matches: 117, Mismatches: 30, Indels: 15
0.72 0.19 0.09
Matches are distributed among these distances:
21 1 0.01
22 34 0.29
23 78 0.67
24 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (22 bp):
CAGCTCATAGAGCTTACTGATT
Found at i:71338422 original size:45 final size:46
Alignment explanation
Indices: 71338270--71338447 Score: 245
Period size: 46 Copynumber: 3.9 Consensus size: 46
71338260 GGACTCACCA
* * *
71338270 CAGCTCGTAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATT
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATT
* *
71338316 CAGCTCGAAAGAGCTTACTGTTTCAGCT-AATTGGAGTTTACCGATT
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAA-TAGAGCTTACCGATT
* *
71338362 CAGCTCGAAAGAGCTTACTG-TTCAACTCAATAGAGCTTACAGATT
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATT
* *
71338407 CAGCTTGAAAGAGCTTACTG-TTCAGCTCAATAGAGATTACC
1 CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACC
71338448 ATTTCCAGTT
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
45 56 0.47
46 63 0.53
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (46 bp):
CAGCTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACCGATT
Found at i:71345762 original size:55 final size:53
Alignment explanation
Indices: 71345640--71345883 Score: 232
Period size: 53 Copynumber: 4.6 Consensus size: 53
71345630 ATTAGGGTTT
* * * * *
71345640 AAGGATACCATGTAAGACCATGCCAAGGCATAGAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAA-G-TTCATAAGGC
* *
71345694 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * * *
71345749 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
* *
71345802 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGCTTC--AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAG-TTCATAAGGC
* * *
71345851 AAGGATACCACGTAAGACCATGACAAGTCATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
71345884 AAATGGTAAG
Statistics
Matches: 162, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
49 30 0.19
52 8 0.05
53 42 0.26
54 39 0.24
55 39 0.24
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:71345999 original size:23 final size:24
Alignment explanation
Indices: 71345962--71346006 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
71345952 ATCATAAGGT
*
71345962 AAGGTAAAACGAGTT-ATGCTAAA
1 AAGGTAAAACAAGTTCATGCTAAA
*
71345985 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAAACAAGTTCATGCTA
71346007 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (24 bp):
AAGGTAAAACAAGTTCATGCTAAA
Found at i:71346106 original size:16 final size:16
Alignment explanation
Indices: 71346085--71346115 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71346075 ATAAATTTGA
71346085 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
71346101 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
71346116 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Done.