Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 251 of 427
Found at i:71657804 original size:6 final size:6
Alignment explanation
Indices: 71657772--71657865 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
71657762 AAGAAACATT
* * * *
71657772 ATCAGA A-CTAGA ATCAAA ATGAAA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
71657821 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71657866 GTGAATGCAT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 57 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:71657832 original size:31 final size:31
Alignment explanation
Indices: 71657793--71657865 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
71657783 AATCAAAATG
*
71657793 AAAATCAGAATCAGAATCAGGTGACAGAATC
1 AAAATCAGAATCAGAATCAGGTAACAGAATC
* *
71657824 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AAAATCAGAATCAGAATCAGGTAACAGAATC
71657855 AAAATCAGAAT
1 AAAATCAGAAT
71657866 GTGAATGCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AAAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:71658047 original size:2 final size:2
Alignment explanation
Indices: 71658040--71658067 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
71658030 ACCAGAACAG
71658040 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71658068 TATGTGGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71658352 original size:27 final size:27
Alignment explanation
Indices: 71658322--71658703 Score: 399
Period size: 27 Copynumber: 14.2 Consensus size: 27
71658312 AACACCCTAG
* * *
71658322 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
71658349 GGGTAAAACGGTAATTCTG-AAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* ** *
71658375 AGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * * * *
71658402 GGGTCAAACGATAATTCTATAAATTGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
**
71658429 GGGTAAAATAGTAATTCTT-TAAATCGA
1 GGGTAAAACGGTAATT-TTGTAAATCGA
***
71658456 GGGTAAAATAATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* *
71658483 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * * *
71658510 GAGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
71658537 GGGTAAAATGGTAATTTGGTAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
** *
71658564 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
71658591 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
71658618 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
*
71658645 GGGTAAAACGGTAATTTTGTAAATCAA
1 GGGTAAAACGGTAATTTTGTAAATCGA
* * *
71658672 GGTTGAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTGTAAATCGA
71658699 GGGTA
1 GGGTA
71658704 CTTTAGTAAT
Statistics
Matches: 299, Mismatches: 53, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
26 24 0.08
27 274 0.92
28 1 0.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAACGGTAATTTTGTAAATCGA
Found at i:71658482 original size:81 final size:81
Alignment explanation
Indices: 71658322--71658730 Score: 450
Period size: 81 Copynumber: 5.1 Consensus size: 81
71658312 AACACCCTAG
* * * * * *
71658322 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTC-TGAAATCGAAGGTAAAATAG
1 GGGTAAAACGATAATTTTATAAATCGAGGGTAAAACAGTAATTCTTTAAATCGAGGGTAAAATAG
*
71658386 TAATTCTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
71658402 GGGTCAAACGATAATTCTATAAATTGAGGGTAAAATAGTAATTCTTTAAATCGAGGGTAAAATAA
1 GGGTAAAACGATAATTTTATAAATCGAGGGTAAAACAGTAATTCTTTAAATCGAGGGTAAAATAG
71658467 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * * *
71658483 GGGTAAAACGATAATTCTGTAAATCGAGAGTAAAAC-GATAATTCTATAAATCGAGGGTAAAATG
1 GGGTAAAACGATAATTTTATAAATCGAGGGTAAAACAG-TAATTCTTTAAATCGAGGGTAAAATA
* *
71658547 GTAATTTGGTAAATCAA
65 GTAATTTTGTAAATCGA
* * * * *
71658564 GGGTAAAA-TAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACA
1 GGGTAAAACGA-TAATTTTATAAATCGAGGGTAAAACAGTAATTCTTTAAATCGAGGGTAAAATA
71658628 GTAATTTTGTAAATCGA
65 GTAATTTTGTAAATCGA
* * * * * ***
71658645 GGGTAAAACGGTAATTTTGTAAATCAAGGTTGAAACAGTAATT-TTGTAAATCGAGGGTACTTTA
1 GGGTAAAACGATAATTTTATAAATCGAGGGTAAAACAGTAATTCTT-TAAATCGAGGGTAAAATA
*
71658709 GTAATTTT-AAAAGTCGA
65 GTAATTTTGTAAA-TCGA
71658726 GGGTA
1 GGGTA
71658731 TTTTAGTAAT
Statistics
Matches: 279, Mismatches: 43, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
80 44 0.16
81 234 0.84
82 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (81 bp):
GGGTAAAACGATAATTTTATAAATCGAGGGTAAAACAGTAATTCTTTAAATCGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:71658725 original size:27 final size:27
Alignment explanation
Indices: 71658681--71658742 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
71658671 AGGTTGAAAC
*
71658681 AGTAATTTTGTAAATCGAGGGTACTTT
1 AGTAATTTTGAAAATCGAGGGTACTTT
*
71658708 AGTAATTTT-AAAAGTCGAGGGTATTTT
1 AGTAATTTTGAAAA-TCGAGGGTACTTT
71658735 AGTAATTT
1 AGTAATTT
71658743 GGTAAACTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 3 0.09
27 29 0.91
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (27 bp):
AGTAATTTTGAAAATCGAGGGTACTTT
Found at i:71660882 original size:6 final size:6
Alignment explanation
Indices: 71660850--71660968 Score: 84
Period size: 6 Copynumber: 19.3 Consensus size: 6
71660840 AAGAAACATT
* * * *
71660850 ATCAGA A-CTAGA ATCAAA ATGAAA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
71660899 ATCAGA ATCAGA ATCAG- ATGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
71660950 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
71660969 GTGAATGTAA
Statistics
Matches: 90, Mismatches: 12, Indels: 22
0.73 0.10 0.18
Matches are distributed among these distances:
5 6 0.07
6 70 0.78
7 10 0.11
8 4 0.04
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:71660904 original size:25 final size:25
Alignment explanation
Indices: 71660873--71660940 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
71660863 TCAAAATGAA
*
71660873 AATCAGAATCAGAATCAGGTGACAG
1 AATCAGAATCAGAATCAGATGACAG
71660898 AATCAGAATCAGAATCAGATGACAG
1 AATCAGAATCAGAATCAGATGACAG
*
71660923 AATTAGAATCAGAATCAG
1 AATCAGAATCAGAATCAG
71660941 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.18
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGATGACAG
Found at i:71660910 original size:31 final size:30
Alignment explanation
Indices: 71660873--71660968 Score: 112
Period size: 31 Copynumber: 3.3 Consensus size: 30
71660863 TCAAAATGAA
71660873 AATCAGAATCAGAATCAGGTGACAGAATCAG
1 AATCAGAATCAG-ATCAGGTGACAGAATCAG
*
71660904 AATCAGAATCAG---A--TGACAGAATTAG
1 AATCAGAATCAGATCAGGTGACAGAATCAG
* *
71660929 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAG-ATCAGGTGACAGAATCAG
71660960 AATCAGAAT
1 AATCAGAAT
71660969 GTGAATGTAA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
25 23 0.42
27 1 0.02
29 1 0.02
31 30 0.55
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (30 bp):
AATCAGAATCAGATCAGGTGACAGAATCAG
Found at i:71660955 original size:25 final size:25
Alignment explanation
Indices: 71660873--71660965 Score: 100
Period size: 25 Copynumber: 3.7 Consensus size: 25
71660863 TCAAAATGAA
*
71660873 AATCAGAATCAGAATCAGGTGACAG
1 AATCAGAATCAGAATCAGGTAACAG
* *
71660898 AATCAGAATCAGAATCAGATGACAG
1 AATCAGAATCAGAATCAGGTAACAG
* *
71660923 AATTAGAATCAGAATCA-GTATCAGG
1 AATCAGAATCAGAATCAGGTAACA-G
*
71660948 TAA-CAGAATCAAAATCAG
1 -AATCAGAATCAGAATCAG
71660966 AATGTGAATG
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.05
25 53 0.91
26 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:71661512 original size:27 final size:27
Alignment explanation
Indices: 71661482--71661944 Score: 504
Period size: 27 Copynumber: 17.2 Consensus size: 27
71661472 TACCCCTTAG
** *
71661482 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
71661509 GGGTAAAAC-GATAATTCTT-TAAATCGA
1 GGGTAAAACAG-TAATT-TTGTAAATCGA
* * *
71661536 AGGTAAAACAGTAATTCTGTAAATCCA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* ** * * *
71661563 TGGTAAAATGGTAATTCTATAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * **
71661590 GGGTAAAATAGTAATTCTATAAATTAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
71661617 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
71661644 GGGTAAAAC-GATAATTTTGTAAATCAA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
* *
71661671 GGGTAAAATAATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
71661698 GGGTAAAATAGTAATTTTCTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
71661725 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
71661752 GGGTAAAAC-GATAATTCTGTAAATTGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
71661779 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
71661806 GGGTAGAACAGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
71661833 GGGTAAAACGGTAATTCTATAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
71661860 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
71661887 GGATAAAACTGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
71661914 GGGTAACACAGTAATTTTGTAAAT-GA
1 GGGTAAAACAGTAATTTTGTAAATCGA
71661940 GGGTA
1 GGGTA
71661945 CTTCGGTAAT
Statistics
Matches: 376, Mismatches: 52, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.03
27 361 0.96
28 4 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:71661676 original size:108 final size:108
Alignment explanation
Indices: 71661482--71661944 Score: 610
Period size: 108 Copynumber: 4.3 Consensus size: 108
71661472 TACCCCTTAG
* * * *
71661482 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTTTAAATCGAAGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
* * * * * *
71661547 TAATTCTGTAAATCCATGGTAAAATGGTAATTCTATAATTCGA
66 TAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGA
* **
71661590 GGGTAAAATAGTAATTCTATAAATTAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-G
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
* * *
71661654 ATAATTTTGTAAATCAAGGGTAAAATAATAATTTTGTAAATCGA
66 -TAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGA
*
71661698 GGGTAAAATAGTAATTTTCTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-G
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
* *
71661762 ATAATTCTGTAAATTGAGGGTAAAACAGTAATTTTGTAAATCGA
66 -TAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGA
* * * * *
71661806 GGGTAGAACAGTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAACAG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
* *
71661871 TAATTTTGTAAATCGAGGATAAAACT-GTAATTTTGTAAATCGA
66 TAATTCTGTAAATCGAGGGTAAAA-TAGTAATTTTGTAAATCGA
* * *
71661914 GGGTAACACAGTAATTTTGTAAAT-GAGGGTA
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTA
71661945 CTTCGGTAAT
Statistics
Matches: 317, Mismatches: 35, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
107 8 0.03
108 308 0.97
109 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (108 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG
TAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGA
Found at i:71664121 original size:6 final size:6
Alignment explanation
Indices: 71664091--71664227 Score: 84
Period size: 6 Copynumber: 22.3 Consensus size: 6
71664081 AAGAAACATT
* *
71664091 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
71664138 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATTAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
71664189 ATCAGT ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
71664228 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 20, Indels: 22
0.70 0.14 0.15
Matches are distributed among these distances:
5 5 0.05
6 83 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:71664155 original size:31 final size:31
Alignment explanation
Indices: 71664112--71664227 Score: 124
Period size: 31 Copynumber: 3.5 Consensus size: 31
71664102 AATCAAAATG
*
71664112 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTGAC
71664143 AGAATCAAAATCAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATC------AGGTGAC
* * * * *
71664180 AGAATTAGAATCAGTATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTGAC
71664211 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
71664228 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
31 43 0.61
37 27 0.39
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTGAC
Found at i:71664157 original size:37 final size:37
Alignment explanation
Indices: 71664114--71664227 Score: 141
Period size: 37 Copynumber: 3.2 Consensus size: 37
71664104 TCAAAATGAG
71664114 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
* *
71664151 AATCAGAATCAGAATCAAAATTAGGTGACAGAAT---
1 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
* * *
71664185 --T-AGAATCAGTATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
71664219 AATCAGAAT
1 AATCAGAAT
71664228 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
31 25 0.39
32 1 0.02
36 1 0.02
37 37 0.58
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
Found at i:71664413 original size:2 final size:2
Alignment explanation
Indices: 71664406--71664435 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
71664396 GAACAGATAC
71664406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71664436 GTGGCGAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71664784 original size:27 final size:27
Alignment explanation
Indices: 71664754--71665110 Score: 419
Period size: 27 Copynumber: 13.2 Consensus size: 27
71664744 TAACACCCAA
* * *
71664754 AGGGTAAAATGGTAATTTTATAAATTG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* * * *
71664781 AGGGTAAAA-CGATAATTCTATAAATCA
1 AGGGTAAAATAG-TAATTTTGTAAATCG
* * *
71664808 AAGGTAAAATAGTAATTCTGTAAATCA
1 AGGGTAAAATAGTAATTTTGTAAATCG
* *
71664835 AGGGTAAAATGGTAATTTTGTAAATAG
1 AGGGTAAAATAGTAATTTTGTAAATCG
*
71664862 AGAGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
**
71664889 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* * *
71664916 AGGGTAAAACAATAATTCTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* *
71664943 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
*
71664970 AGGGTAAAATAATAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* *
71664997 AGGGTAAAGTAGTAATTTTGAAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* *
71665024 AGGGTAAAATAGTAATTTTGAAAATTG
1 AGGGTAAAATAGTAATTTTGTAAATCG
**
71665051 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
* ** *
71665078 AGGGTAAAACAAAAATTTTGTACATCG
1 AGGGTAAAATAGTAATTTTGTAAATCG
71665105 AGGGTA
1 AGGGTA
71665111 CTTTGGTAAT
Statistics
Matches: 290, Mismatches: 38, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 288 0.99
28 1 0.00
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.30
Consensus pattern (27 bp):
AGGGTAAAATAGTAATTTTGTAAATCG
Found at i:71665147 original size:81 final size:79
Alignment explanation
Indices: 71664766--71665155 Score: 345
Period size: 81 Copynumber: 4.8 Consensus size: 79
71664756 GGTAAAATGG
* * * * * *
71664766 TAATTTTATAAATTGAGGGTAAAA-CGATAATTCTATAAATCAAAGGTAAAAT-AGTAATTCTGT
1 TAATTTTGTAAATCGAGGGTAAAATAG-TAATT-T-TAAATCGAGGGT-AAATCAGTAATTTTGT
* ***
71664829 AAATCAAGGGTAAAATGG
62 AAATCGAGGGTAAAACAA
* * * *
71664847 TAATTTTGTAAATAGAGAGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAA
1 TAATTTTGTAAATCGAGGGTAAAATAGTAA-TTT-TAAATCGAGGGTAAATCAGTAATTTTGTAA
71664912 ATCGAGGGTAAAACAA
64 ATCGAGGGTAAAACAA
* * *
71664928 TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAT-AATAATTTTGTA
1 TAATTTTGTAAATCGAGGGTAAAATAGTAATT-T-TAAATCGAGGGT-AAATCAGTAATTTTGTA
** *
71664992 AATCGAGGGTAAAGTAG
63 AATCGAGGGTAAAACAA
* * * *
71665009 TAATTTTGAAAATCGAGGGTAAAATAGTAATTTTGAAAATTGAGGGTAAAACGGTAATTTTGTAA
1 TAATTTTGTAAATCGAGGGTAAAATAGTAATTTT--AAATCGAGGGTAAATCAGTAATTTTGTAA
71665074 ATCGAGGGTAAAACAA
64 ATCGAGGGTAAAACAA
* * *** * ** *
71665090 AAATTTTGTACATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTGGTAA
1 TAATTTTGTAAATCGAGGGTAAAATAGTAATTTTA-AA-TCGAGGGTAAATCAGTAATTTTGTAA
71665155 A
64 A
71665156 CTAAAGTATT
Statistics
Matches: 252, Mismatches: 47, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
79 2 0.01
80 11 0.04
81 233 0.92
82 6 0.02
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (79 bp):
TAATTTTGTAAATCGAGGGTAAAATAGTAATTTTAAATCGAGGGTAAATCAGTAATTTTGTAAAT
CGAGGGTAAAACAA
Found at i:71670378 original size:6 final size:6
Alignment explanation
Indices: 71670346--71670422 Score: 77
Period size: 6 Copynumber: 12.7 Consensus size: 6
71670336 AAAAAACATT
* * *
71670346 ATCAG- ATCTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAGGGG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA--GA
*
71670396 A-CAGA ATCAGA AACAGA ATCAGA ATCA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA
71670423 AAATTAGGTG
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
5 5 0.08
6 47 0.80
7 5 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (6 bp):
ATCAGA
Found at i:71670378 original size:18 final size:18
Alignment explanation
Indices: 71670346--71670482 Score: 66
Period size: 19 Copynumber: 7.4 Consensus size: 18
71670336 AAAAAACATT
71670346 ATCAG-ATCTAGAATCAAA
1 ATCAGAATC-AGAATCAAA
* *
71670364 ATGAGAATCAGAATCAGA
1 ATCAGAATCAGAATCAAA
* *
71670382 ATCAGAATCAGGGGA-CAGA
1 ATCAGAATCA--GAATCAAA
* *
71670401 ATCAGAAACAGAATCAGA
1 ATCAGAATCAGAATCAAA
* * * **
71670419 ATCAAAATTAG-GTGACAGG
1 ATCAGAATCAGAAT--CAAA
* *
71670438 ATTAGAATCAGAATCAAT
1 ATCAGAATCAGAATCAAA
71670456 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAAA
71670475 ATCAGAAT
1 ATCAGAAT
71670483 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 19, Indels: 20
0.70 0.15 0.16
Matches are distributed among these distances:
17 5 0.06
18 39 0.43
19 41 0.46
20 5 0.06
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (18 bp):
ATCAGAATCAGAATCAAA
Found at i:71670414 original size:37 final size:37
Alignment explanation
Indices: 71670367--71670453 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
71670357 AATCAAAATG
*
71670367 AGAATCAGAATCAGAATCAGAATCAGGGGACAGAATC
1 AGAATCAGAATCAGAATCAAAATCAGGGGACAGAATC
* * * * *
71670404 AGAAACAGAATCAGAATCAAAATTAGGTGACAGGATT
1 AGAATCAGAATCAGAATCAAAATCAGGGGACAGAATC
71670441 AGAATCAGAATCA
1 AGAATCAGAATCA
71670454 ATATCAGGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.48, C:0.14, G:0.22, T:0.16
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAAAATCAGGGGACAGAATC
Found at i:71670445 original size:31 final size:31
Alignment explanation
Indices: 71670367--71670482 Score: 97
Period size: 31 Copynumber: 3.5 Consensus size: 31
71670357 AATCAAAATG
* *
71670367 AGAATCAGAATCAGAATCAGAATCAGGGGACAGAATC
1 AGAATCAGAATCAGAATCAAAATCA--GG---TAA-C
* * *
71670404 AGAAACAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
* * *
71670435 AGGATTAGAATCAGAATCAATATCAGGTAAC
1 AGAATCAGAATCAGAATCAAAATCAGGTAAC
*
71670466 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
71670483 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
31 40 0.62
32 1 0.02
35 2 0.03
37 22 0.34
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAAAATCAGGTAAC
Found at i:71670482 original size:37 final size:36
Alignment explanation
Indices: 71670369--71670482 Score: 107
Period size: 37 Copynumber: 3.2 Consensus size: 36
71670359 TCAAAATGAG
*
71670369 AATCAGAATCAGAATCAGAATCAGGGGACAGAATCAGA
1 AATCAGAATCAGAATCA-AATCAGGTGACAGAATCA-A
* *
71670407 AA-CAGAATCAGAATCAAAATTAGGTGACAGGAT---
1 AATCAGAATCAGAATC-AAATCAGGTGACAGAATCAA
*
71670440 --T-AGAATCAGAATCAATATCAGGTAACAGAATCAA
1 AATCAGAATCAGAATCAA-ATCAGGTGACAGAATCAA
71670474 AATCAGAAT
1 AATCAGAAT
71670483 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 19
0.71 0.07 0.22
Matches are distributed among these distances:
30 2 0.03
31 24 0.39
36 1 0.02
37 31 0.51
38 3 0.05
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (36 bp):
AATCAGAATCAGAATCAAATCAGGTGACAGAATCAA
Found at i:71671357 original size:27 final size:27
Alignment explanation
Indices: 71670991--71671342 Score: 435
Period size: 27 Copynumber: 13.1 Consensus size: 27
71670981 ACACCCAAGT
* *
71670991 GGTAAAATGGTAATTTTATAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
*
71671018 GGTAAAA-AGATAATTTTGTAAATCGAA
1 GGTAAAATAG-TAATTTTGTAAATCGAG
* **
71671045 GGTAAAACAGTAATCCTGTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
* *
71671072 GGTAAAA-CGATAATTTTGTAAATAGAG
1 GGTAAAATAG-TAATTTTGTAAATCGAG
*
71671099 GGTAAAATAGTAATTTTGTAAATTGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
* *
71671126 GGTACAATAGTAATTTTTTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
*
71671153 GGTAAAAT-GATAATTCTGTAAATCGAG
1 GGTAAAATAG-TAATTTTGTAAATCGAG
* *
71671180 GGTAAAACTA-TAATTCTGTAAATCGAT
1 GGTAAAA-TAGTAATTTTGTAAATCGAG
* *
71671207 GGTAAAACAATAATTTTGTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
* *
71671234 GGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
71671261 GGTAAAATAGTAATTTT-TAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
** *
71671287 GGTAAAACGGTAATTTTGGAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
*
71671314 GGTAAAACAGTAATTTTGTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAG
71671341 GG
1 GG
71671343 AACTTTGGTA
Statistics
Matches: 283, Mismatches: 33, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
26 28 0.10
27 251 0.89
28 4 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GGTAAAATAGTAATTTTGTAAATCGAG
Found at i:71671366 original size:27 final size:27
Alignment explanation
Indices: 71671296--71671385 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
71671286 GGGTAAAACG
* ***
71671296 GTAATTTTGGAAATCGAGGGTAA-AACA
1 GTAATTTTGAAAATCGAGGG-AACTTTA
* *
71671323 GTAATTTTGTAAATCGAGGGAACTTTG
1 GTAATTTTGAAAATCGAGGGAACTTTA
* *
71671350 GTAATTTT-AAAAGTCGAGGGTATTTTA
1 GTAATTTTGAAAA-TCGAGGGAACTTTA
71671377 GTAATTTTG
1 GTAATTTTG
71671386 TAAACTAAAG
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 5 0.10
27 46 0.90
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (27 bp):
GTAATTTTGAAAATCGAGGGAACTTTA
Found at i:71671367 original size:54 final size:52
Alignment explanation
Indices: 71670991--71671389 Score: 383
Period size: 54 Copynumber: 7.4 Consensus size: 52
71670981 ACACCCAAGT
* * * * *
71670991 GGTAAAATGGTAATTTTATAAATCGAGGGTAAAAAGATAATTTTGTAAATCGAA
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAA-TTT-TAAATCGAG
* ** * * *
71671045 GGTAAAACAGTAATCCTGTAAATCGAGGGTAAAACGATAATTTTGTAAATAGAG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAA-TTT-TAAATCGAG
* * *
71671099 GGTAAAATAGTAATTTTGTAAATTGAGGGTACAATAGTAATTTTTTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAA--TTTTAAATCGAG
* * *
71671153 GGTAAAAT-GATAATTCTGTAAATCGAGGGTAAAACT-ATAATTCTGTAAATCGAT
1 GGTAAAATAG-TAATTTTGTAAATCGAGGGTAAAA-TGGTAATT-T-TAAATCGAG
* *
71671207 GGTAAAACAATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATT-T-TAAATCGAG
*
71671261 GGTAAAATAGTAATTTT-TAAATCGAGGGTAAAACGGTAATTTTGGAAATCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTT--AAATCGAG
* **
71671314 GGTAAAACAGTAATTTTGTAAATCGAGGG-AACTTTGGTAATTTTAAAAGTCGAG
1 GGTAAAATAGTAATTTTGTAAATCGAGGGTAA-AATGGTAATTTT-AAA-TCGAG
***
71671368 GGTATTTTAGTAATTTTGTAAA
1 GGTAAAATAGTAATTTTGTAAA
71671390 CTAAAGTATT
Statistics
Matches: 294, Mismatches: 39, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
51 1 0.00
52 3 0.01
53 55 0.19
54 230 0.78
55 5 0.02
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (52 bp):
GGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTAAATCGAG
Found at i:71673278 original size:30 final size:30
Alignment explanation
Indices: 71673242--71673342 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
71673232 GACAAGATTG
* * *
71673242 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
71673272 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
71673300 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
71673329 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71673343 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:71673354 original size:29 final size:28
Alignment explanation
Indices: 71673271--71673346 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
71673261 AAAATTGTAC
* *
71673271 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
71673299 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
71673328 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
71673347 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:71679921 original size:46 final size:46
Alignment explanation
Indices: 71679871--71680045 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71679861 ATGGTTAGCA
71679871 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71679917 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71679961 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71680009 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71680046 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 7 0.06
46 77 0.70
47 7 0.06
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71680025 original size:92 final size:93
Alignment explanation
Indices: 71679868--71680037 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
71679858 AGGATGGTTA
* *
71679868 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71679933 TGAGT-CGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71679960 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71680025 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71680038 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 67 0.91
93 7 0.09
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71683009 original size:15 final size:15
Alignment explanation
Indices: 71682989--71683057 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
71682979 GTATCTTGGG
71682989 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
71683004 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
71683019 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
71683034 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
71683049 TTTCTTTAT
1 TTTCTTTAT
71683058 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:71683058 original size:30 final size:30
Alignment explanation
Indices: 71682980--71683067 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
71682970 CATAGTATCG
* * * *
71682980 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
71683010 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
71683040 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
71683068 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:71685477 original size:46 final size:46
Alignment explanation
Indices: 71685427--71685602 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
71685417 GATGGTTGCA
71685427 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71685473 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71685518 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71685566 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71685603 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71685583 original size:93 final size:93
Alignment explanation
Indices: 71685424--71685594 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71685414 TAGGATGGTT
* *
71685424 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71685489 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71685517 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71685582 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71685595 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71690688 original size:28 final size:28
Alignment explanation
Indices: 71690627--71690724 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
71690617 TCACAAATTG
** * *
71690627 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
71690656 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
71690684 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
71690712 GCACTAAGTGTGC
1 GCACTAAGTGTGC
71690725 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:71704499 original size:25 final size:25
Alignment explanation
Indices: 71704470--71704524 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
71704460 GGCAAGGTGG
71704470 CGCCACTTAGGGGACAAGGAAGTGA
1 CGCCACTTAGGGGACAAGGAAGTGA
71704495 CGCCACTTAGGGGACAAGGAAGTGA
1 CGCCACTTAGGGGACAAGGAAGTGA
71704520 CGCCA
1 CGCCA
71704525 TAGAGGAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.31, C:0.24, G:0.35, T:0.11
Consensus pattern (25 bp):
CGCCACTTAGGGGACAAGGAAGTGA
Found at i:71704537 original size:25 final size:24
Alignment explanation
Indices: 71704470--71704538 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
71704460 GGCAAGGTGG
*
71704470 CGCCACTTAGGGGACAAGGAAGTGA
1 CGCCAC-TAGGGAACAAGGAAGTGA
*
71704495 CGCCACTTAGGGGACAAGGAAGTGA
1 CGCCAC-TAGGGAACAAGGAAGTGA
71704520 CGCCA-TAGAGGAAGCAAGG
1 CGCCACTAG-GGAA-CAAGG
71704539 GGTCCAAGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 3 0.07
24 3 0.07
25 35 0.85
ACGTcount: A:0.33, C:0.20, G:0.36, T:0.10
Consensus pattern (24 bp):
CGCCACTAGGGAACAAGGAAGTGA
Found at i:71705293 original size:27 final size:27
Alignment explanation
Indices: 71705276--71705653 Score: 469
Period size: 27 Copynumber: 14.0 Consensus size: 27
71705266 ATTACCAAAG
* *
71705276 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
71705303 TACCCTCGATTTACAAAATTACAAATT
1 TACCCTCGATTTACAAAATTACTATTT
* *
71705330 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
71705357 TACCCTCGATTTACAAAATTACCA-TT
1 TACCCTCGATTTACAAAATTACTATTT
71705383 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
71705410 TACCCTCCATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
71705437 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* *
71705464 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
71705491 TCCCCTCGATTTATAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
71705518 TACCCTCGATTTA-AAATATTACTATTT
1 TACCCTCGATTTACAAA-ATTACTATTT
*
71705545 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-TTT
*
71705572 TACCCTCGATTTA-AAGAATTACTGTTT
1 TACCCTCGATTTACAA-AATTACTATTT
* * * *
71705599 TACCTTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
71705626 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
71705653 T
1 T
71705654 GCTCCTAGAG
Statistics
Matches: 305, Mismatches: 37, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
26 31 0.10
27 270 0.89
28 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:71705984 original size:2 final size:2
Alignment explanation
Indices: 71705977--71706012 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
71705967 GTTTTGCCAC
*
71705977 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71706013 CTGTTCTGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71706061 original size:27 final size:26
Alignment explanation
Indices: 71706009--71706068 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
71705999 ATATATATAT
*
71706009 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
71706035 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
71706062 ATATCTG
1 ATATCTG
71706069 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:71706228 original size:31 final size:31
Alignment explanation
Indices: 71706193--71706253 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
71706183 TCTGATTTTG
* *
71706193 ATTCTGTTACCTGATACTGATTTTGATTCTA
1 ATTCTGTCACCTAATACTGATTTTGATTCTA
*
71706224 ATTCTGTCACCTAATTCTGATTTTGATTCT
1 ATTCTGTCACCTAATACTGATTTTGATTCT
71706254 GTCATCTGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.49
Consensus pattern (31 bp):
ATTCTGTCACCTAATACTGATTTTGATTCTA
Found at i:71706244 original size:25 final size:25
Alignment explanation
Indices: 71706216--71706278 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
71706206 ATACTGATTT
*
71706216 TGATTCTAATTCTGTCACCTAATTC
1 TGATTCTGATTCTGTCACCTAATTC
* * *
71706241 TGATTTTGATTCTGTCATCTGATTC
1 TGATTCTGATTCTGTCACCTAATTC
71706266 TGATTCTGATTCT
1 TGATTCTGATTCT
71706279 CATTTTGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (25 bp):
TGATTCTGATTCTGTCACCTAATTC
Found at i:71706263 original size:19 final size:18
Alignment explanation
Indices: 71706237--71706299 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
71706227 CTGTCACCTA
71706237 ATTCTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
*
71706255 -TCATCTGATTCTGATTCTG
1 AT--TCTGATTTTGATTCTG
*
71706274 ATTCTCATTTTGATTCT-
1 ATTCTGATTTTGATTCTG
71706291 AGTTCTGAT
1 A-TTCTGAT
71706300 AATGTTTCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
17 2 0.05
18 19 0.51
19 15 0.41
20 1 0.03
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.52
Consensus pattern (18 bp):
ATTCTGATTTTGATTCTG
Found at i:71706267 original size:6 final size:6
Alignment explanation
Indices: 71706237--71706299 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
71706227 CTGTCACCTA
* * *
71706237 ATTCTG ATTTTG ATTCTG -TCATCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
71706286 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
71706300 AATGTTTCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 2 0.04
6 38 0.83
7 5 0.11
8 1 0.02
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:71708419 original size:27 final size:27
Alignment explanation
Indices: 71708381--71708491 Score: 152
Period size: 27 Copynumber: 4.1 Consensus size: 27
71708371 GTATTGTTAT
*
71708381 CCCTCTATTTACAAAATTA-CAGTTTTA
1 CCCTCGATTTACAAAATTACCA-TTTTA
* *
71708408 CCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
71708435 CCTTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
71708462 CCTTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
71708489 CCC
1 CCC
71708492 CTTAGGTGTT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
27 74 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:71708818 original size:2 final size:2
Alignment explanation
Indices: 71708811--71708842 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
71708801 GCTTCGCCAC
71708811 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71708843 CTGTTCTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71708868 original size:26 final size:27
Alignment explanation
Indices: 71708839--71708898 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
71708829 ATATATATAT
*
71708839 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
71708865 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
71708892 ATATCTG
1 ATATCTG
71708899 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:71709056 original size:6 final size:6
Alignment explanation
Indices: 71709017--71709126 Score: 71
Period size: 6 Copynumber: 17.8 Consensus size: 6
71709007 TTGCATTCAC
* * * *
71709017 ATTCTG ATTTTG ATTCTG TTTCCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * *
71709066 -TCACCTA ATTTTG ATTCTG ATTCTG TTTCTG ATTCT- ATCACCTA ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
71709116 ATTCTG ATTCT
1 ATTCTG ATTCT
71709127 CATTTTTATT
Statistics
Matches: 78, Mismatches: 19, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
5 3 0.04
6 64 0.82
7 8 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:71709086 original size:37 final size:37
Alignment explanation
Indices: 71709039--71709126 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 37
71709029 ATTCTGTTTC
* *
71709039 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTATCACCTAATT
* * *
71709076 TTGATTCTGATTCTGTTTCTGATTCTATCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTATCACCTAATT
71709113 CTGATTCTGATTCT
1 CTGATTCTGATTCT
71709127 CATTTTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTCTATCACCTAATT
Found at i:71709138 original size:37 final size:36
Alignment explanation
Indices: 71709039--71709139 Score: 112
Period size: 37 Copynumber: 2.7 Consensus size: 36
71709029 ATTCTGTTTC
* * *
71709039 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCT-ATTTTAATTCTATCACCTAATT
* * *
71709076 TTGATTCTGATTCTGTTTCTGATTCTATCACCTAATT
1 CTGATTCTGATTCTATTT-TAATTCTATCACCTAATT
*
71709113 CTGATTCTGATTCTCATTTTTATTCTA
1 CTGATTCTGATTCT-ATTTTAATTCTA
71709140 GTTCTGATAA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
36 2 0.04
37 48 0.91
38 3 0.06
ACGTcount: A:0.21, C:0.20, G:0.10, T:0.50
Consensus pattern (36 bp):
CTGATTCTGATTCTATTTTAATTCTATCACCTAATT
Found at i:71712473 original size:30 final size:29
Alignment explanation
Indices: 71712379--71712480 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
71712369 TATAGTGAAT
* * *
71712379 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
71712408 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
71712436 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
71712466 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
71712481 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:71720365 original size:30 final size:29
Alignment explanation
Indices: 71720271--71720372 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
71720261 TATAGTGAAT
* * *
71720271 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
71720300 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
71720328 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
71720358 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
71720373 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:71723761 original size:30 final size:30
Alignment explanation
Indices: 71723717--71723805 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
71723707 CAAAGATAAC
71723717 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
71723746 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
71723776 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
71723806 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:71723765 original size:15 final size:15
Alignment explanation
Indices: 71723717--71723796 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
71723707 CAAAGATAAC
*
71723717 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71723731 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
71723746 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
71723761 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
71723776 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
71723791 AAGAAA
1 AAGAAA
71723797 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71723805 original size:15 final size:15
Alignment explanation
Indices: 71723728--71723805 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
71723718 AGAAAACCGA
71723728 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
71723743 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
71723757 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
71723772 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
71723788 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
71723803 ATA
1 ATA
71723806 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:71726868 original size:93 final size:93
Alignment explanation
Indices: 71726756--71726926 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71726746 GCCCATAAGT
* *
71726756 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71726821 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71726849 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71726914 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71726927 TAACCATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71726923 original size:46 final size:46
Alignment explanation
Indices: 71726748--71726923 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
71726738 TGTAACCCGC
* * *
71726748 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71726794 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
71726844 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
71726887 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71726924 TGCTAACCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71734324 original size:25 final size:24
Alignment explanation
Indices: 71734290--71734403 Score: 74
Period size: 24 Copynumber: 4.9 Consensus size: 24
71734280 AGCTCCTCCC
71734290 GAGCTGAAAAATAGTAAGCTCTATT
1 GAGCT-AAAAATAGTAAGCTCTATT
* *
71734315 GAGCTAAAAATGGTAAGCTTTATT
1 GAGCTAAAAATAGTAAGCTCTATT
* * * * *
71734339 AAGCTGAACA-A-TAAGCTTTATC
1 GAGCTAAAAATAGTAAGCTCTATT
* * * * * *
71734361 GAGCT-GAATTGGTAAGTTCCAAT
1 GAGCTAAAAATAGTAAGCTCTATT
71734384 GAGCT-AAAATAGTAAGCTCT
1 GAGCTAAAAATAGTAAGCTCT
71734404 TACGAACTGA
Statistics
Matches: 65, Mismatches: 22, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
21 1 0.02
22 14 0.22
23 21 0.32
24 24 0.37
25 5 0.08
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (24 bp):
GAGCTAAAAATAGTAAGCTCTATT
Found at i:71734330 original size:24 final size:25
Alignment explanation
Indices: 71734290--71734351 Score: 81
Period size: 24 Copynumber: 2.5 Consensus size: 25
71734280 AGCTCCTCCC
71734290 GAGCTGAAAAATAGTAAGCTCTATT
1 GAGCTGAAAAATAGTAAGCTCTATT
* *
71734315 GAGCT-AAAAATGGTAAGCTTTATT
1 GAGCTGAAAAATAGTAAGCTCTATT
* *
71734339 AAGCTGAACAATA
1 GAGCTGAAAAATA
71734352 AGCTTTATCG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 21 0.68
25 10 0.32
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.27
Consensus pattern (25 bp):
GAGCTGAAAAATAGTAAGCTCTATT
Found at i:71741248 original size:108 final size:110
Alignment explanation
Indices: 71741095--71741292 Score: 276
Period size: 108 Copynumber: 1.8 Consensus size: 110
71741085 ATCCTTTCGA
* * * *
71741095 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTATTGACATGGTCTTACACGATAGCCTTGCCTTA-GAAACCTCACCAA
*
71741158 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
71741203 AACTTATCAATGCCATGTATTGACATGGTCTTACACGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTATTGACATGGTCTTACACGATAGCCTTGCCTTAGAAACCTCACCAAT
*
71741268 TGCCATGTCTTAGCATGGTCTTACA
66 TGCCATGCCTTAGCATGGTCTTACA
71741293 CGGTATCCTT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 46 0.60
109 7 0.09
110 23 0.30
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTATTGACATGGTCTTACACGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:71741302 original size:55 final size:54
Alignment explanation
Indices: 71741048--71741302 Score: 235
Period size: 55 Copynumber: 4.8 Consensus size: 54
71741038 ACACGGGTAC
* * * *
71741048 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TTCGAAA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
71741097 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
71741150 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TAGAAA
* * * * *
71741205 CTTATCAA-TGCCATGTATTGACATGGTCTTACACGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
71741258 CCTTACCAATTGCCATGTCTT-AGCATGGTCTTACACGGTATCCTT
1 -CTTACCAATTGCCATGTCTTGA-CATGGTCTTACATGGTATCCTT
71741303 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 46 0.27
54 13 0.08
55 68 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:71743798 original size:40 final size:40
Alignment explanation
Indices: 71743740--71743907 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
71743730 CAATTGAATG
* *
71743740 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
71743781 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
71743820 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
71743860 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
71743900 ATATCCGG
1 ATATCCGG
71743908 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:71743878 original size:80 final size:79
Alignment explanation
Indices: 71743740--71743907 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
71743730 CAATTGAATG
* * *
71743740 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
71743805 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
71743820 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
71743884 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
71743900 ATATCCGG
1 ATATCCGG
71743908 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:71751809 original size:40 final size:40
Alignment explanation
Indices: 71751751--71751918 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
71751741 CAATTGAATG
* *
71751751 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
71751792 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
71751831 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
71751871 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
71751911 ATATCCGG
1 ATATCCGG
71751919 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:71751889 original size:80 final size:79
Alignment explanation
Indices: 71751751--71751918 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
71751741 CAATTGAATG
* * *
71751751 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
71751816 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
71751831 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
71751895 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
71751911 ATATCCGG
1 ATATCCGG
71751919 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:71759945 original size:44 final size:46
Alignment explanation
Indices: 71759882--71759969 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 46
71759872 CTTGACATGG
*
71759882 TCTTACATGGTAGCCTTGCCTTAT-G-AACTCACCAATGCCATGCC
1 TCTTACATGGGAGCCTTGCCTTATAGTAACTCACCAATGCCATGCC
* *
71759926 TCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATG
1 TCTTACATGGGAGCC-TTGCCTTATAGTAACTCACCAATGCCATG
71759970 TCTTGACATG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 2 0.05
44 20 0.53
45 1 0.03
46 15 0.39
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (46 bp):
TCTTACATGGGAGCCTTGCCTTATAGTAACTCACCAATGCCATGCC
Found at i:71761731 original size:42 final size:42
Alignment explanation
Indices: 71761672--71761795 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
71761662 TAGGGTTAGT
71761672 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
* * * *
71761714 TGAGATTTCGTGTAAGACCATACCTGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATTGATA
* ** * * * *
71761757 TCAGATCCCATGCAAAACCATATCTAGGATATGGCATTG
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTG
71761796 GTATTGTGAC
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 35 0.52
43 32 0.48
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
Found at i:71763079 original size:12 final size:12
Alignment explanation
Indices: 71763062--71763088 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
71763052 CAATTAGTTT
71763062 TGATTTAAATTG
1 TGATTTAAATTG
71763074 TGATTTAAATTG
1 TGATTTAAATTG
71763086 TGA
1 TGA
71763089 AATTGGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (12 bp):
TGATTTAAATTG
Found at i:71764931 original size:47 final size:47
Alignment explanation
Indices: 71764851--71765181 Score: 468
Period size: 47 Copynumber: 7.1 Consensus size: 47
71764841 TTAGGATTTT
* *
71764851 AATGTGATGAATGTGAAC-TGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * *
71764897 AACGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
71764944 AATGTAATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71764991 GATGTGTTGAATGTGAACATGTATATATGTGATAAGGCC-AATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71765037 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
71765084 AATGTAATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * *
71765131 GATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
71765178 AATG
1 AATG
71765182 CGAAATGTGT
Statistics
Matches: 254, Mismatches: 29, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
46 57 0.22
47 197 0.78
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:71765035 original size:140 final size:141
Alignment explanation
Indices: 71764852--71765176 Score: 582
Period size: 140 Copynumber: 2.3 Consensus size: 141
71764842 TAGGATTTTA
** *
71764852 ATGTGATGAATGTGAAC-TGCGTATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACA
71764916 TGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGG
66 TGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGG
71764981 CCGAATGGCCG
131 CCGAATGGCCG
* *
71764992 ATGTGTTGAATGTGAACATGTATATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACA
71765056 TGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGG
66 TGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGG
71765121 CCGAATGGCCG
131 CCGAATGGCCG
*
71765132 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGC
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGC
71765177 TAATGCGAAA
Statistics
Matches: 176, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
140 153 0.87
141 23 0.13
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACA
TGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGG
CCGAATGGCCG
Found at i:71765211 original size:140 final size:139
Alignment explanation
Indices: 71764852--71765227 Score: 499
Period size: 140 Copynumber: 2.7 Consensus size: 139
71764842 TAGGATTTTA
** * * *
71764852 ATGTGATGAATGTGAAC-TGCGTATGTGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCC-AATGGCCAATGCGA-GAATGTGAACA
* * *
71764916 TGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGG
64 TGAGTATATGAGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGG
71764981 CCGAATGGCCG
129 CCGAATGGCCG
* *
71764992 ATGTGTTGAATGTGAACATGTATATATGTGATAAGGCCAATGGCCAATGTGATGAATGTGAACAT
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCAATGGCCAATGCGA-GAATGTGAACAT
* * *
71765057 GCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGGC
65 GAGTATATGAGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGGC
71765122 CGAATGGCCG
130 CGAATGGCCG
* * *
71765132 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATGCGA-AATGTG--TAT
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCC-AATGGCCAATGCGAGAATGTGAACAT
* *
71765194 GAGATAGATATGAGATAAAGCCGAATGGCTAATG
65 GAG-T--ATATGAGATAAGGCCGAATGGCCAATG
71765228 CGAAACGTGT
Statistics
Matches: 216, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
137 4 0.02
138 1 0.00
139 6 0.03
140 176 0.81
141 29 0.13
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (139 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCAATGGCCAATGCGAGAATGTGAACATG
AGTATATGAGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAGGCC
GAATGGCCG
Found at i:71765221 original size:46 final size:46
Alignment explanation
Indices: 71765167--71765290 Score: 167
Period size: 46 Copynumber: 2.7 Consensus size: 46
71765157 ATGTGGTAAG
71765167 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGATAAA
1 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGATAAA
* * * * *
71765213 GCCGAATGGCTAATGCGAAACGTGTATGATATGGATATGTGGTAAA
1 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGATAAA
* * * *
71765259 GCCAAATGGCTAATGTGAGATATGTATGAGAT
1 GCCGAATGGCTAATGCGAAATGTGTATGAGAT
71765291 GTGTATATAT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (46 bp):
GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGATAAA
Found at i:71766836 original size:40 final size:40
Alignment explanation
Indices: 71766781--71767252 Score: 613
Period size: 40 Copynumber: 11.8 Consensus size: 40
71766771 GAGAATTGAG
*
71766781 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
71766821 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
71766861 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * * *
71766901 AGTGACGTATCTGGGCTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
71766941 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
71766981 AGTGACGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
71767021 AGTGATATATCCGTGCTAA-ACTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTC-CCGAAGAGCATTCGTGCT
** * * * *
71767061 AGTGACGTATTCGGGCTAAGTTCTGAAGAGCATTCTTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
71767101 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
71767141 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
71767181 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
71767221 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
71767253 ATCATGATGG
Statistics
Matches: 368, Mismatches: 62, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
40 368 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:71766917 original size:80 final size:80
Alignment explanation
Indices: 71766781--71767252 Score: 719
Period size: 80 Copynumber: 5.9 Consensus size: 80
71766771 GAGAATTGAG
* * ** * *
71766781 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCG
71766846 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * ** * * *
71766861 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGACGTATCTGGGCTAAGTTCTG
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCG
71766926 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
71766941 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCAGGCTAAGTTCCG
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCG
71767006 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * *
71767021 AGTGATATATCCGTGCTAAACTCCGAAGAGCATTCGTGCTAGTGACGTATTCGGGCTAAGTTCTG
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCG
*
71767086 AAGAGCATTCTTGCT
66 AAGAGCATTCGTGCT
*
71767101 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCG
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCG
71767166 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* *** * *
71767181 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCG
71767246 AAGAGCA
66 AAGAGCA
71767253 ATCATGATGG
Statistics
Matches: 362, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 362 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGACGTATCCGGGCTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:71771538 original size:47 final size:47
Alignment explanation
Indices: 71771485--71771819 Score: 499
Period size: 47 Copynumber: 7.1 Consensus size: 47
71771475 TTAGGATTTT
* *
71771485 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71771532 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
71771579 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGAC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
71771626 AATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71771673 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
71771720 AATGTAATGAATGTGAACATGCATATATGAGATAAGGCCGAAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG-AATGGCC
* * * *
71771768 GATGTGATGAATGTGAACATGTATAATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCAT-ATATGTGATAAGGCCGAATGGCC
71771816 AATG
1 AATG
71771820 CGAAATGTGT
Statistics
Matches: 263, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
47 212 0.81
48 37 0.14
49 14 0.05
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:71771591 original size:94 final size:94
Alignment explanation
Indices: 71771485--71771869 Score: 506
Period size: 94 Copynumber: 4.1 Consensus size: 94
71771475 TTAGGATTTT
* *
71771485 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* * *
71771550 ATGCGTATGTGCGATAAGGCCGAATGGCC
66 ATGCATATATGAGATAAGGCCGAATGGCC
* *
71771579 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGACAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* *
71771644 ATGTATATATGTGATAAGGCCGAATGGCC
66 ATGCATATATGAGATAAGGCCGAATGGCC
* * * *
71771673 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAAC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
71771738 ATGCATATATGAGATAAGGCCGAAATGGCC
66 ATGCATATATGAGATAAGGCCG-AATGGCC
* * * * * *
71771768 GATGTGATGAATGTGAACATGTATAATATGTGGTAAGGCCGAATGGCTAATGCGA--AATGTGTA
1 AATGTGATGAATGTGAACATGCAT-ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
71771831 -ATGAGATAGATATGAGATAAAGCCGAATGGCT
65 CATG-CAT--ATATGAGATAAGGCCGAATGGCC
71771863 AATGTGA
1 AATGTGA
71771870 AATGCGTATG
Statistics
Matches: 257, Mismatches: 29, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
93 3 0.01
94 175 0.68
95 40 0.16
96 39 0.15
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.25
Consensus pattern (94 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCATATATGAGATAAGGCCGAATGGCC
Found at i:71771638 original size:141 final size:142
Alignment explanation
Indices: 71771485--71771819 Score: 582
Period size: 141 Copynumber: 2.4 Consensus size: 142
71771475 TTAGGATTTT
** *
71771485 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
*
71771550 ATGCGTATGTGCGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAG
66 ATGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAG
71771615 GCCG-AATGGAC
131 GCCGAAATGGAC
71771626 AATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
71771691 ATGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAG
66 ATGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAG
*
71771756 GCCGAAATGGCC
131 GCCGAAATGGAC
* * *
71771768 GATGTGATGAATGTGAACATGTATAATATGTGGTAAGGCCGAATGGCTAATG
1 AATGTGATGAATGTGAACATGTAT-ATATGTGATAAGGCCGAATGGCCAATG
71771820 CGAAATGTGT
Statistics
Matches: 184, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 130 0.71
142 29 0.16
143 25 0.14
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (142 bp):
AATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGCGTATGTGCGATAAGGCCGAATGGCCAATGTAATGAATGTGAACATGCATATATGAGATAAG
GCCGAAATGGAC
Found at i:71771899 original size:46 final size:46
Alignment explanation
Indices: 71771793--71771930 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
71771783 AACATGTATA
* * *
71771793 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTAATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGT-ATGAGATGG
* * *
71771840 ATATGAGATAAAGCCGAATGGCTAATGTGAAATGCGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
* * *
71771886 ATCTGTGGTAAAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATG
71771931 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 47 0.59
47 32 0.41
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATGG
Found at i:71774565 original size:27 final size:27
Alignment explanation
Indices: 71774524--71774668 Score: 173
Period size: 27 Copynumber: 5.4 Consensus size: 27
71774514 TGGATAAGTT
* *
71774524 GTAGAATTACTGAAATACCCCTGTATG
1 GTAGAATTACCGAAATACCCCTGTAGG
71774551 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* ***
71774578 ATAGAATTACCGAAATACTTTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
71774605 GTAGAAATATCGAAATACCACTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
71774632 GTAGAATTACCGAGATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
71774659 GTAAAATTAC
1 GTAGAATTAC
71774669 GAGTTTTCCC
Statistics
Matches: 98, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:71775364 original size:27 final size:26
Alignment explanation
Indices: 71775320--71775371 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71775310 CTCGCTGCAA
*
71775320 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
71775347 TCTGGTGACTTCGTCACAATATCTA
1 TCTGGTGACCTCGCCACAATATCTA
71775372 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:71775441 original size:26 final size:27
Alignment explanation
Indices: 71775412--71775469 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
71775402 ACATATATAA
*
71775412 ATCTGT-TCTGGTGGCCTAGCCACAAT
1 ATCTGTATCTGGTGACCTAGCCACAAT
* * *
71775438 ATCTGTATCTGGTGACTTCGTCACAAT
1 ATCTGTATCTGGTGACCTAGCCACAAT
71775465 ATCTG
1 ATCTG
71775470 GCAGCCTCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
ATCTGTATCTGGTGACCTAGCCACAAT
Found at i:71777205 original size:30 final size:29
Alignment explanation
Indices: 71777111--71777212 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
71777101 TATAGTGAAT
* * *
71777111 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
71777140 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
71777168 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
71777198 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
71777213 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:71785092 original size:30 final size:29
Alignment explanation
Indices: 71784998--71785099 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
71784988 TATAGTGAAT
* * *
71784998 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
71785027 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
71785055 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
71785085 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
71785100 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:71803209 original size:27 final size:27
Alignment explanation
Indices: 71803171--71803316 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
71803161 TGGATATGTT
71803171 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
71803198 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
71803225 ATAGAATTACTGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
71803252 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
71803279 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
71803306 GTAAAATTACC
1 GTAGAATTACC
71803317 ATTTTGCCCT
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:71804012 original size:27 final size:26
Alignment explanation
Indices: 71803968--71804018 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71803958 CTCGCTACAA
*
71803968 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
71803995 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
71804019 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:71806741 original size:48 final size:48
Alignment explanation
Indices: 71806632--71806765 Score: 189
Period size: 48 Copynumber: 2.8 Consensus size: 48
71806622 GTTAAATGTT
* *
71806632 TAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
71806679 TAACCGTGGCATATCCACTTTGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
71806727 TAATCGTGGTATATCCACTTAGTACCACGTTACACGTAT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
71806766 AACCGTGGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
47 29 0.38
48 47 0.62
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:71808373 original size:16 final size:16
Alignment explanation
Indices: 71808354--71808384 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71808344 CTTCTTCACT
71808354 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
71808370 TACTTACTTACTTAA
1 TACTCACTTACTTAA
71808385 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:71808390 original size:20 final size:20
Alignment explanation
Indices: 71808351--71808390 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
71808341 AAACTTCTTC
* *
71808351 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
71808371 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
71808391 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:71808763 original size:54 final size:52
Alignment explanation
Indices: 71808575--71808773 Score: 210
Period size: 49 Copynumber: 3.8 Consensus size: 52
71808565 ACACGGGTAC
* * * *
71808575 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCATT--TT-GAAA
1 CTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTCCTTAGAAA
* * *
71808624 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT-CCTTA-GAAA
* * * * *
71808677 CTCACCAATGTCATGCCTTAGCATGGTCTTACATGGGA-CCTTCCCTTAGAAA
1 CTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT-CCTTAGAAA
71808729 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACC-ATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
71808774 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
49 38 0.31
51 1 0.01
52 13 0.11
53 37 0.30
54 29 0.24
55 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.35
Consensus pattern (52 bp):
CTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTCCTTAGAAA
Found at i:71810443 original size:46 final size:46
Alignment explanation
Indices: 71810393--71810565 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
71810383 TGGTTGAGCA
*
71810393 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
71810439 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
71810484 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
71810532 CCCGAGCTCATTGAGTTGAGTCCGCGTTTACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
71810566 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.55
47 28 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71813087 original size:48 final size:48
Alignment explanation
Indices: 71813021--71813312 Score: 514
Period size: 48 Copynumber: 6.1 Consensus size: 48
71813011 GCGGAAATTG
* *
71813021 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCCAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
71813069 ATGTATGAGATAAGTATATGTGG-AAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
71813116 ATGTAGGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
71813164 ATGTAGGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
71813212 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
71813260 ATGTATGAGATATGTATATGTGGTAAAGCCGAATCGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
71813308 ATGTA
1 ATGTA
71813313 GGCGATGTGT
Statistics
Matches: 237, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 44 0.19
48 193 0.81
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:71813604 original size:37 final size:37
Alignment explanation
Indices: 71813459--71813603 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
71813449 GGAAATATAT
*
71813459 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
71813496 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71813533 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
71813570 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
71813604 TCATCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71823248 original size:42 final size:42
Alignment explanation
Indices: 71823199--71823310 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 42
71823189 TGAGATTACG
* ***
71823199 TGTAAGACCATATCTAGGATATGGCATCGATATGAGATTTTGA
1 TGTAAGACCATATCTAGGATATGGCATCGATATCAGA-TCCCA
* * * *
71823242 -GTAAGACTATACCTAGGCTATTGGCATTGATATCAGATCCCA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATCAGATCCCA
*
71823284 TGTAAGGCCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
71823311 TGGTATAGCA
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
42 25 0.45
43 30 0.55
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATCAGATCCCA
Found at i:71829617 original size:34 final size:34
Alignment explanation
Indices: 71829579--71829661 Score: 112
Period size: 34 Copynumber: 2.4 Consensus size: 34
71829569 CATTAACCAT
** *
71829579 CCAGCACACCGTATGCTCGTATGAGCCAATCCAC
1 CCAGCACACCAAATGCTCGTAAGAGCCAATCCAC
* *
71829613 CCAGCACACTAAATGCTCGTAAGAGCCAATCCAT
1 CCAGCACACCAAATGCTCGTAAGAGCCAATCCAC
*
71829647 CTAGCACACCAAATG
1 CCAGCACACCAAATG
71829662 GACTATATCG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.33, C:0.35, G:0.16, T:0.17
Consensus pattern (34 bp):
CCAGCACACCAAATGCTCGTAAGAGCCAATCCAC
Found at i:71834063 original size:54 final size:53
Alignment explanation
Indices: 71833950--71834056 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 53
71833940 TATATTTTTT
71833950 TATTAAAAAATGAATGATTAAATCTGAAGATACCATGTGTCACCATCTAATAGG
1 TATTAAAAAATGAATGATTAAATCTGAAGA-ACCATGTGTCACCATCTAATAGG
71834004 TATTAAAAAATGAATGATTAAATCTGAAG-ACCATGTGTCACCATCTAATAGG
1 TATTAAAAAATGAATGATTAAATCTGAAGAACCATGTGTCACCATCTAATAGG
71834056 T
1 T
71834057 CCATTAATTG
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 24 0.45
54 29 0.55
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (53 bp):
TATTAAAAAATGAATGATTAAATCTGAAGAACCATGTGTCACCATCTAATAGG
Found at i:71845453 original size:29 final size:29
Alignment explanation
Indices: 71845419--71845523 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
71845409 TACTCGATTT
* * *
71845419 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
71845448 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
71845477 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
71845506 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
71845524 TTTTCCAGCA
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:71845537 original size:28 final size:28
Alignment explanation
Indices: 71845478--71845578 Score: 175
Period size: 29 Copynumber: 3.5 Consensus size: 28
71845468 CTTCGAGCTC
71845478 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATAT-TTTCCAGCAT
71845507 GCACACTTAGTGCCATATTTTCCAGCAT
1 GCACACTTAGTGCCATATTTTCCAGCAT
*
71845535 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATA-TTTTCCAGCAT
71845564 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
71845579 ATCTCGTCAC
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 26 0.38
29 43 0.62
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (28 bp):
GCACACTTAGTGCCATATTTTCCAGCAT
Found at i:71850156 original size:43 final size:43
Alignment explanation
Indices: 71850012--71850168 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 43
71850002 TGTGTTATCT
* * * **
71850012 TGTAAGACCATGTCTGGAACATTTGCATCGAT-TTGTGATTTATG
1 TGTAAGACCACGTCTGGGACATTCGCATCGATATT-TGA-TTACA
* * * *
71850056 TGTAAGACCATGTCTGGGACATTCACATCG-TATATGATTTCA
1 TGTAAGACCACGTCTGGGACATTCGCATCGATATTTGATTACA
* * *
71850098 TGTAAGACC-CTGTCTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTCGCATCGATATTTGATTACA
* *
71850141 TGTAAGACCACGTCTGAGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTCGCAT
71850169 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.28
43 37 0.40
44 29 0.32
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTCGCATCGATATTTGATTACA
Found at i:71854236 original size:40 final size:40
Alignment explanation
Indices: 71854088--71854272 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
71854078 CGAATGATAT
* * *
71854088 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATAT-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATC
* *
71854129 CCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGTTACTAATC
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATC
**
71854169 CCGGGCTAAG-CCCGAAGGCATGGGTGCGAGTTACTAATC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATC
* * *
71854208 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTGCT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-C
*
71854248 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
71854273 AATGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 38 0.30
40 62 0.50
41 24 0.19
42 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATC
Found at i:71854285 original size:40 final size:40
Alignment explanation
Indices: 71854208--71854291 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
71854198 GTTACTAATC
** *
71854208 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 CCGGGCTAGGTCCCGAAGGCATTTGAACGAGTAGCTATAA
* * *
71854248 CCGGGCTATGTCCCGAAGGCATTTGAATGAGTAGCTATAT
1 CCGGGCTAGGTCCCGAAGGCATTTGAACGAGTAGCTATAA
71854288 CCGG
1 CCGG
71854292 TTAAACTCCG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGGGCTAGGTCCCGAAGGCATTTGAACGAGTAGCTATAA
Found at i:71858235 original size:42 final size:43
Alignment explanation
Indices: 71858179--71858283 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
71858169 ATGATTTATG
*
71858179 TGTAAGACCATGTCTGGGACA-TCGACATCG-TATTTAATTTCA
1 TGTAAGACCATGTCTGGGACAGT-GACATCGATATTTAATTACA
* * * *
71858221 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAGA
1 TGTAAGACCATGTCTGGGACAGTGACATCGATATTTAATTACA
**
71858264 TGTAAGACCACATCTGGGAC
1 TGTAAGACCATGTCTGGGAC
71858284 GTTGTCATTG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGACATCGATATTTAATTACA
Found at i:71859646 original size:56 final size:53
Alignment explanation
Indices: 71859553--71859661 Score: 132
Period size: 56 Copynumber: 2.0 Consensus size: 53
71859543 TGAAAAAAAA
71859553 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAGG
1 AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAGG
***
71859606 AAAGAAAAGAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAGG
1 AAAGAAAA-AAAAA--TGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAGG
71859662 GAAAAGGGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
53 8 0.17
54 5 0.10
55 2 0.04
56 30 0.62
57 3 0.06
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (53 bp):
AAAGAAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAGG
Found at i:71860921 original size:40 final size:40
Alignment explanation
Indices: 71860855--71861021 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
71860845 AAATTGAATG
* * *
71860855 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
71860894 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
71860934 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
71860974 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
71861014 ATATCCGG
1 ATATCCGG
71861022 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:71871199 original size:571 final size:568
Alignment explanation
Indices: 71869580--71871246 Score: 2636
Period size: 553 Copynumber: 3.0 Consensus size: 568
71869570 TCACAGGTAA
*
71869580 GTTTT-AAATATTTATAATTAATCGTTCTTGAAACTAAATATTATCGCGATGTAGGCAAGTGTAC
1 GTTTTAAAAT-TTTATAATTAATCGTTCTTGAAACTAAATATTATCGCGATTTAGGCAAGTGTAC
*
71869644 CTATCGAACAGTAGTATAGTTTTAGCAAGACCGGATTGTCGAACCCAAAGGAACTAAAAGTACTC
65 CTATCGAACAGTAGTATAGTTTTAGCAAGA-CGGATTGTCGAACCCAAAGGAACTAAAAGTACTA
*
71869709 GTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTTGTTTTAACTAACTAGTTAA
129 GTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTTGTTTTAACTAACTAATTAA
71869774 C-AAATCTAAGAATTCACAGAGAATGGAATTGGGGGATTACTTTTGGAAAACCATTGAATTAAGA
194 CTAAA-CTAAGAATTCACAGAGAATGGAATTGGGGGATTACTTTTGGAAAACCATTGAATTAAGA
71869838 CAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCGGACGATTTAT
258 CAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCGGACGATTTAT
71869903 TCATTTAACTTGTTCCATAGAGACCCTTAAGTTATGTTATTATCCCAATTCGAGTCTAATAACGT
323 TCATTTAACTTGTTCCATAGAGACCCTTAAGTTATGTTATTATCCCAATTCGAGTCTAATAACGT
* *
71869968 CTAATCCCTAGATTGAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGTTGAATTAACTCGG
388 CTAATCCCTAGATTGAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGTTGCATTAACTCGA
* *
71870033 TCTATGGATCCCCTTATTAGGTTTCACCCTAATTCGAAAAAATCTTGTCACCCTATGTCTAGGCG
453 TCTATGGATCCCCTTATTAGGTTTCACCCTAATCCG-CAAAATCTTGTCACCCTATGTCTAGGCG
*
71870098 CGT-AA-AACTCCGCTTAATTATGACAAATTGATTGCGAGGTTTCGTGATAG
517 CGTAAACAACTCCGCTTAATTATGACAAATTGATTGCGAGGTTTCATGATAG
* * * *
71870148 GTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAACTATTATCACGATTTAGTCAAGTGTACC
1 GTTTTAAAATTTTATAATTAATCGTTCTTGAAACTAAATATTATCGCGATTTAGGCAAGTGTACC
71870213 TATCGAACAGTAG--TA----T------A--GATTGTCGAACCCAAAGGAACTAAAAGTACTAGT
66 TATCGAACAGTAGTATAGTTTTAGCAAGACGGATTGTCGAACCCAAAGGAACTAAAAGTACTAGT
* *
71870264 AATGATTGTCTTTTTATTATCTAGCCTAAGAACAATGGGGTTTTGTTTTAACTAACTAATTAACT
131 AATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTTGTTTTAACTAACTAATTAACT
*
71870329 AATCTAAGAATTCACAGAGAATGGAATTGGGGGATTACTTTTGGAAAACCATTGAATTAAGACAA
196 AAACTAAGAATTCACAGAGAATGGAATTGGGGGATTACTTTTGGAAAACCATTGAATTAAGACAA
71870394 TACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCGGACGATTTATTCA
261 TACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCGGACGATTTATTCA
71870459 TTTAACTTGTTCCATAGAGACCCTTAAGTTATGTTATTATCCCAATTCGAGTCTAATAACGTCTA
326 TTTAACTTGTTCCATAGAGACCCTTAAGTTATGTTATTATCCCAATTCGAGTCTAATAACGTCTA
71870524 ATCCCTAGATTGAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGTTGCATTAACTCGATCT
391 ATCCCTAGATTGAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGTTGCATTAACTCGATCT
* * * * *
71870589 ACGGATCCCCTTATTAGGTTTAACCTTAATCTGGCAAAATCTTGTCACCTTATGTCTAGGCGCGT
456 ATGGATCCCCTTATTAGGTTTCACCCTAATC-CGCAAAATCTTGTCACCCTATGTCTAGGCGCGT
71870654 AAACAACTCCGCTTAATTATGACAAATT-ATTGCGAGGTTTCATGATAG
520 AAACAACTCCGCTTAATTATGACAAATTGATTGCGAGGTTTCATGATAG
*
71870702 GTTTTAAAATTTTACAATTAATCGTTCTTGAAACTAAATATTATCGCGATTTAGGCAAGTGTACC
1 GTTTTAAAATTTTATAATTAATCGTTCTTGAAACTAAATATTATCGCGATTTAGGCAAGTGTACC
* *
71870767 TATCGAACAGTAGTATAGTTTTAGCAAGATCGGATTGTCGAGCCCAAAGGAACTAAATGTACTAG
66 TATCGAACAGTAGTATAGTTTTAGCAAGA-CGGATTGTCGAACCCAAAGGAACTAAAAGTACTAG
* * * *
71870832 TAATGACTATCTTTTTGTTATCTAGCCTAAGAATAATGGGGTTTTGTTTTAATTAACTAATTATC
130 TAATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTTGTTTTAACTAACTAATTAAC
** * ** * * * *
71870897 TAAACTAAGAACGCACTGAGAAAAGAATTGGGGAATTGCTTTTGGGAAAATCGATTGAATGAAGA
195 TAAACTAAGAATTCACAGAGAATGGAATTGGGGGATTACTTTT-GGAAAA-CCATTGAATTAAGA
* *
71870962 CAATACCTAAGGAAAAATCCACCTGGACTTTACTTGTTATTCTGGCTCCGAATCGGACGATTTAT
258 CAATACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCGGACGATTTAT
* * * * * * * *
71871027 TCATTCAACTTG-TCTCGTAGAGATCCTTAAGTTATGTCATTATGCCTATTCAAGACTAATAACG
323 TCATTTAACTTGTTC-CATAGAGACCCTTAAGTTATGTTATTATCCCAATTCGAGTCTAATAACG
* * *
71871091 TCTAATCCCTAGATTAAATAACTGAGACTTTTCTCTAATTAACACCCTAGGGTTGCATTAACTTG
387 TCTAATCCCTAGATTGAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGTTGCATTAACTCG
*
71871156 ATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCAGCAAAATCTTGTCACCCTATTTCTAGGC
452 ATCTATGGATCCCCTTATTAGGTTTCACCCTAATCC-GCAAAATCTTGTCACCCTATGTCTAGGC
* *
71871221 GCGCAATCAACTCCGCTTAATTATGA
516 GCGTAAACAACTCCGCTTAATTATGA
71871247 AAAAAGTACT
Statistics
Matches: 1011, Mismatches: 64, Indels: 45
0.90 0.06 0.04
Matches are distributed among these distances:
553 405 0.40
554 97 0.10
555 24 0.02
556 3 0.00
560 1 0.00
562 1 0.00
566 3 0.00
568 69 0.07
569 128 0.13
570 8 0.01
571 272 0.27
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (568 bp):
GTTTTAAAATTTTATAATTAATCGTTCTTGAAACTAAATATTATCGCGATTTAGGCAAGTGTACC
TATCGAACAGTAGTATAGTTTTAGCAAGACGGATTGTCGAACCCAAAGGAACTAAAAGTACTAGT
AATGACTGTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTTGTTTTAACTAACTAATTAACT
AAACTAAGAATTCACAGAGAATGGAATTGGGGGATTACTTTTGGAAAACCATTGAATTAAGACAA
TACCTAAGGAAAAATCCACCTAGACTGTACTTGTTATTCTGGCTCCGAATCGGACGATTTATTCA
TTTAACTTGTTCCATAGAGACCCTTAAGTTATGTTATTATCCCAATTCGAGTCTAATAACGTCTA
ATCCCTAGATTGAATAATTGAGACTTTTCTCTAATTAACACCCTAGGGTTGCATTAACTCGATCT
ATGGATCCCCTTATTAGGTTTCACCCTAATCCGCAAAATCTTGTCACCCTATGTCTAGGCGCGTA
AACAACTCCGCTTAATTATGACAAATTGATTGCGAGGTTTCATGATAG
Found at i:71881220 original size:28 final size:28
Alignment explanation
Indices: 71881155--71881253 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
71881145 ATTGGTTTCG
* * *
71881155 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
71881184 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
71881212 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
71881240 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71881254 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:71887522 original size:46 final size:46
Alignment explanation
Indices: 71887472--71887647 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
71887462 TGGTTGAGCA
71887472 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71887518 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71887563 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71887611 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71887648 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71887628 original size:93 final size:93
Alignment explanation
Indices: 71887469--71887639 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71887459 GGATGGTTGA
* *
71887469 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71887534 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71887562 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71887627 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71887640 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71890619 original size:15 final size:15
Alignment explanation
Indices: 71890599--71890667 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
71890589 GTATCTTGGG
71890599 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
71890614 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
71890629 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
71890644 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
71890659 TTTCTTTAT
1 TTTCTTTAT
71890668 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:71890668 original size:30 final size:30
Alignment explanation
Indices: 71890590--71890677 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
71890580 CATAGTATCG
* * * *
71890590 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
71890620 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
71890650 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
71890678 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:71893084 original size:46 final size:46
Alignment explanation
Indices: 71893034--71893209 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
71893024 ATGGTTGGCA
71893034 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71893080 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71893125 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71893173 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71893210 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71893189 original size:93 final size:93
Alignment explanation
Indices: 71893030--71893201 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71893020 TAGGATGGTT
* *
71893030 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71893095 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
71893123 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71893188 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71893202 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71898645 original size:46 final size:46
Alignment explanation
Indices: 71898578--71898753 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71898568 ATATTTGGCA
71898578 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
71898624 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
71898671 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
71898717 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71898754 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:71898733 original size:93 final size:93
Alignment explanation
Indices: 71898574--71898745 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71898564 ACGGATATTT
* *
71898574 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71898639 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
71898667 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71898732 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71898746 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71901683 original size:15 final size:15
Alignment explanation
Indices: 71901663--71901731 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
71901653 GTATCTTGGG
71901663 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
71901678 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
71901693 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
71901708 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
71901723 TTTCTTTAT
1 TTTCTTTAT
71901732 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:71901732 original size:30 final size:30
Alignment explanation
Indices: 71901654--71901741 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
71901644 CATAGTATCG
* * * *
71901654 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
71901684 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
71901714 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
71901742 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:71904173 original size:46 final size:46
Alignment explanation
Indices: 71904120--71904295 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71904110 GGATTTGGCA
71904120 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
71904166 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
71904213 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
71904259 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71904296 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:71904275 original size:93 final size:93
Alignment explanation
Indices: 71904116--71904287 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71904106 ACTAGGATTT
* *
71904116 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71904181 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
71904209 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71904274 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71904288 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71908173 original size:48 final size:46
Alignment explanation
Indices: 71908046--71908259 Score: 170
Period size: 48 Copynumber: 4.6 Consensus size: 46
71908036 GAATGCCAAA
* * *
71908046 GCCATGTCCCAGACATGGTCTTACA-TAG-ATCCACAT-ATC-GTT
1 GCCATGTCCCAGACATGGTCTTACACTAGCATACATATCATCTGAT
* ** * * *
71908088 GCCATATCCCAGTTATGGTCTTAAACAAAGTC-T-CATATTAGTGCTGAT
1 GCCATGTCCCAGACATGGTCTTACAC-TAG-CATACATATCA-T-CTGAT
71908136 GCCATGTCCCAGACATGGTCTTACACTAGCATACATATCATCATCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCATACATATCATC-T-GAT
* * * * * *
71908184 GCCATGTCCTAGACATGGTCTTACACTGGCACACATATCAACGCCGAA
1 GCCATGTCCCAGACATGGTCTTACACTAGCATACATATC-A-TCTGAT
*
71908232 GCCATGTACCAGACATGGTCTTACACTA
1 GCCATGTCCCAGACATGGTCTTACACTA
71908260 CCTCACATTA
Statistics
Matches: 136, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
42 21 0.15
44 6 0.04
45 2 0.01
46 3 0.02
47 6 0.04
48 96 0.71
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (46 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCATACATATCATCTGAT
Found at i:71913328 original size:43 final size:43
Alignment explanation
Indices: 71913271--71913429 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 43
71913261 ATATATCGAA
*
71913271 CAATGCCAA-TGTCCCAGACGTGGTCTTACATGCTATCTCATAT
1 CAATGCCAACTGTCCCAGACGTGGTCTTACATG-TATCACATAT
* *
71913314 CAATGCC-ACTGTCCCAGACAG-GGTCTTACATGAATCAAATA-
1 CAATGCCAACTGTCCCAGAC-GTGGTCTTACATGTATCACATAT
* * * * * *
71913355 CGATTCCGA-TGTCCCAGACATGGTCTTACACGTAACAACATAT
1 CAATGCCAACTGTCCCAGACGTGGTCTTACATGTATC-ACATAT
*
71913398 CAATGCCAAC-GTTCCAGACGTGGTCTTACATG
1 CAATGCCAACTGTCCCAGACGTGGTCTTACATG
71913430 AAAACACATA
Statistics
Matches: 93, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
41 27 0.29
42 12 0.13
43 53 0.57
44 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
CAATGCCAACTGTCCCAGACGTGGTCTTACATGTATCACATAT
Found at i:71915813 original size:40 final size:40
Alignment explanation
Indices: 71915757--71915933 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
71915747 CGGATGATAA
* * * *
71915757 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTTCTATAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTCTATAT
* * * * * *
71915797 CCGGGCTATGTCCCGAAGGCATTTATACTAGTGAT-TATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-TTCTATAT
* *
71915837 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTCTATAT
71915877 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGT-TATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTT-TCTATAT
71915917 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
71915934 ATACTTGGGT
Statistics
Matches: 113, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 98 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTCTATAT
Done.