Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 252 of 427
Found at i:71915915 original size:80 final size:80
Alignment explanation
Indices: 71915757--71915924 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 80
71915747 CGGATGATAA
* * * * * *
71915757 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTTCTATAACCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTATAACCGGGCTAAGACCCGAAGGCATTTA
*
71915822 TACTAGTGATTATAT
66 TACGAGTGATTATAT
* * *
71915837 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTATAACCGGGCTAAGACCCGAAGGCATTTA
*
71915902 TGCGAGTTG-TTATAT
66 TACGAG-TGATTATAT
71915917 CC-GGCTAA
1 CCGGGCTAA
71915925 ATCCCGAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 6 0.08
80 68 0.89
81 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCAAAGGCATTCGTGCGAGTTGCTATAACCGGGCTAAGACCCGAAGGCATTTA
TACGAGTGATTATAT
Found at i:71918614 original size:51 final size:51
Alignment explanation
Indices: 71918537--71918661 Score: 191
Period size: 51 Copynumber: 2.5 Consensus size: 51
71918527 TTCGGGATGT
*
71918537 TACAAGTGTA-GTACTACGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGAC
1 TACAAGTG-AGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGG-C
71918589 -ACAAGTGAGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGC
1 TACAAGTGAGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGC
* *
71918639 TACAAGGGTGGTACTATGTGAAG
1 TACAAGTGAGGTACTATGTGAAG
71918662 CCAGTGCGTA
Statistics
Matches: 68, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
50 2 0.03
51 66 0.97
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
TACAAGTGAGGTACTATGTGAAGGCCACTTTGTGAATAAAATAGCTTTGGC
Found at i:71919686 original size:13 final size:13
Alignment explanation
Indices: 71919670--71919694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71919660 TGTGAGCAGA
71919670 CCGTGTGTCTAAC
1 CCGTGTGTCTAAC
71919683 CCGTGTGTCTAA
1 CCGTGTGTCTAA
71919695 ATAGGGCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.32
Consensus pattern (13 bp):
CCGTGTGTCTAAC
Found at i:71921375 original size:43 final size:43
Alignment explanation
Indices: 71921310--71921449 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 43
71921300 GCTCGTACAG
* * * *
71921310 TGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTGA
1 TGCCAATGTCCCAAACAG-GGTCTTACACGTAATCAAATATCGA
* *
71921353 TGCCACTGTCCCAAACAGGGTCTTACACG-AACTCATATA-CGA
1 TGCCAATGTCCCAAACAGGGTCTTACACGTAA-TCAAATATCGA
**
71921395 TGCCAATGTCCCAAACATTGTCTTACACGTAAATCACAA-ATCGA
1 TGCCAATGTCCCAAACAGGGTCTTACACGT-AATCA-AATATCGA
*
71921439 TGCCAACGTCC
1 TGCCAATGTCC
71921450 TAGATGTGGT
Statistics
Matches: 80, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
42 30 0.38
43 33 0.41
44 17 0.21
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
TGCCAATGTCCCAAACAGGGTCTTACACGTAATCAAATATCGA
Found at i:71930682 original size:55 final size:56
Alignment explanation
Indices: 71930617--71930731 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
71930607 AGCATGGCTG
* * *
71930617 CCAGATACAGA-AAATGTGACAGAG-TCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGGGCT-ACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* *
71930673 CCAGA-ACAGATATACGTGGCAGGGCTACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGGGCTACCAGAACAGATAATTTGTGGCATAGCCA
71930728 CCAG
1 CCAG
71930732 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 20 0.39
57 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGGGCTACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:71930730 original size:28 final size:27
Alignment explanation
Indices: 71930642--71930731 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
71930632 GTGACAGAGT
*
71930642 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
71930671 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
71930698 TACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
71930726 CACCAG
1 CACCAG
71930732 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:71930884 original size:28 final size:28
Alignment explanation
Indices: 71930837--71930901 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
71930827 AAATTAACCC
*
71930837 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
71930865 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
71930893 TAGGGGTAT
1 TAGGGGTAT
71930902 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:71931176 original size:8 final size:8
Alignment explanation
Indices: 71931149--71931179 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
71931139 CCAAAATACT
71931149 GGCTTTTC
1 GGCTTTTC
*
71931157 GGCATTTC
1 GGCTTTTC
71931165 GGCTTTTC
1 GGCTTTTC
71931173 GGCTTTT
1 GGCTTTT
71931180 GCCGATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GGCTTTTC
Found at i:71931989 original size:12 final size:13
Alignment explanation
Indices: 71931970--71932002 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
71931960 GGGTTCAGCT
71931970 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
71931983 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
71931995 ATGGAGAA
1 ATGGAGAA
71932003 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:71942158 original size:28 final size:28
Alignment explanation
Indices: 71942089--71942160 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
71942079 AATAAGCCCG
* * *
71942089 CACACTTAGTGCT-TAATAGTCGAACTCG
1 CACACTTAGTGCTAT-ATAATCAAACTCA
71942117 CACACTTAGTGCTATATAATCAAACTCA
1 CACACTTAGTGCTATATAATCAAACTCA
71942145 CACACTTAGTGCTATA
1 CACACTTAGTGCTATA
71942161 CAATTTGAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.98
29 1 0.03
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCA
Found at i:71946540 original size:93 final size:93
Alignment explanation
Indices: 71946428--71946598 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
71946418 GCCCATAAGT
* *
71946428 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71946493 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71946521 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71946586 CGAGTTCGGATGC
66 CGAGTTCGGATGC
71946599 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71946595 original size:46 final size:46
Alignment explanation
Indices: 71946420--71946595 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
71946410 TGTAACCCGC
* * *
71946420 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71946466 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
71946516 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
71946559 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71946596 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71949007 original size:30 final size:30
Alignment explanation
Indices: 71948963--71949051 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
71948953 CAAAGATAAC
71948963 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
71948992 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
71949022 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
71949052 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:71949011 original size:15 final size:15
Alignment explanation
Indices: 71948963--71949042 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
71948953 CAAAGATAAC
*
71948963 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71948977 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
71948992 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
71949007 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
71949022 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
71949037 AAGAAA
1 AAGAAA
71949043 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71949051 original size:15 final size:15
Alignment explanation
Indices: 71948974--71949051 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
71948964 AGAAAACCGA
71948974 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
71948989 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
71949003 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
71949018 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
71949034 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
71949049 ATA
1 ATA
71949052 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:71952103 original size:93 final size:93
Alignment explanation
Indices: 71951991--71952162 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71951981 GCCCATAAGT
* *
71951991 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71952056 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71952084 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71952149 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
71952163 AACCCCTAGT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71952158 original size:46 final size:46
Alignment explanation
Indices: 71951983--71952158 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71951973 TGTAACCCGC
* * *
71951983 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
71952029 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
71952079 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
71952122 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71952159 TGCCAACCCC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:71954541 original size:15 final size:15
Alignment explanation
Indices: 71954494--71954572 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
71954484 CAAAGATAAC
*
71954494 AAGAAAACC-GAAT-
1 AAGAAATCCAGAATA
71954507 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
71954522 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
71954537 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
71954552 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
71954567 AAGAAA
1 AAGAAA
71954573 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
13 9 0.17
14 2 0.04
15 42 0.78
16 1 0.02
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71954541 original size:30 final size:30
Alignment explanation
Indices: 71954494--71954581 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
71954484 CAAAGATAAC
71954494 AAGAAAACC-GAAT-AAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
71954522 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
71954552 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
71954582 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
28 7 0.14
29 6 0.12
30 34 0.69
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:71954581 original size:15 final size:15
Alignment explanation
Indices: 71954507--71954581 Score: 73
Period size: 15 Copynumber: 5.0 Consensus size: 15
71954497 AAAACCGAAT
71954507 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
* *
71954522 GAGAAA-CCCAGAATA
1 AAGAAATCCAAG-ATA
71954537 AAGAAATCC-AGAATA
1 AAGAAATCCAAG-ATA
* *
71954552 AAGAGATCCAGGATA
1 AAGAAATCCAAGATA
*
71954567 AAGAAACCCAAGATA
1 AAGAAATCCAAGATA
71954582 CGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
14 4 0.08
15 42 0.86
16 3 0.06
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:71963196 original size:39 final size:39
Alignment explanation
Indices: 71963147--71963339 Score: 246
Period size: 39 Copynumber: 4.9 Consensus size: 39
71963137 GATGTGTATG
* *
71963147 AATGTACGAATTGTGATATCCGGGCTAAACCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCA
* * *
71963186 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCA
* *
71963225 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGC-
1 AATGTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCA
* *
71963263 AATGGTGCGAGCTATGATATCCGGGCT-AACCCGAAGGCA
1 AAT-GTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCA
* * *
71963302 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGG
1 AATGTGCGAGTTGTGATATCCGGGCTAA-ACCCGAAGG
71963340 AATTTGTGCG
Statistics
Matches: 135, Mismatches: 15, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
38 32 0.24
39 95 0.70
40 8 0.06
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (39 bp):
AATGTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCA
Found at i:71963349 original size:78 final size:78
Alignment explanation
Indices: 71963157--71963349 Score: 300
Period size: 78 Copynumber: 2.5 Consensus size: 78
71963147 AATGTACGAA
* * *
71963157 TTGTGATATCCGGGCTAAACCCGAAGGCAAATGTGCGAATTATGATATCCGGGCTAAGCCCGAAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACTATGATATCCGGGCTAAGCCCGAAG
71963222 GCAATTGTGCGAG
66 GCAATTGTGCGAG
* *
71963235 TTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA-CCCGAAG
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACTATGATATCCGGGCTAAGCCCGAAG
71963299 GCAATTGTGCGAG
66 GCAATTGTGCGAG
*
71963312 TTGTGATATCCGGGTTAAGTCCCGAAGG-AATTTGTGCG
1 TTGTGATATCCGGGCTAAG-CCCGAAGGCAA-TTGTGCG
71963350 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
77 40 0.38
78 66 0.62
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (78 bp):
TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAACTATGATATCCGGGCTAAGCCCGAAG
GCAATTGTGCGAG
Found at i:71970232 original size:39 final size:39
Alignment explanation
Indices: 71970188--71970383 Score: 232
Period size: 39 Copynumber: 5.0 Consensus size: 39
71970178 GATGTGTATG
*
71970188 AATGTGCGAATTGTGATATCCGGGCTAAACCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
*
71970227 AATGTGCGAATTATGATATCCGGGCTAAGCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* ** **
71970266 ATTGTGCGTTTTGTGATATCCGGGCTAAGCTTGAAGGC-
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* ** *
71970304 AATGGTACGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
1 AAT-GTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* * * *
71970344 ATTGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCA
1 AATGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCA
71970384 TTTGTGCGGG
Statistics
Matches: 132, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
38 2 0.02
39 118 0.89
40 12 0.09
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (39 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:71970282 original size:78 final size:79
Alignment explanation
Indices: 71970190--71970383 Score: 257
Period size: 78 Copynumber: 2.5 Consensus size: 79
71970180 TGTGTATGAA
* * *
71970190 TGTGCGAATTGTGATATCCGGGCTAAACCCGAAGGCAAAT-GTGCGAATTATGATATCCGGGCTA
1 TGTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCAAATGGTACGAACTATGATATCCGGGCTA
71970254 AGCCCGAAGGCAAT
66 AGCCCGAAGGCAAT
** * ** *
71970268 TGTGCGTTTTGTGATATCCGGGCTAAGCTTGAAGGC-AATGGTACGAGCTATGATATCCGGGCTA
1 TGTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCAAATGGTACGAACTATGATATCCGGGCTA
71970332 AGCCCGAAGGCAAT
66 AGCCCGAAGGCAAT
* * *
71970346 TGTGCGAGTTGTGATATCCAGGTTAAGTCCCGAAGGCA
1 TGTGCGAGTTGTGATATCCGGGCTAA-ACCCGAAGGCA
71970384 TTTGTGCGGG
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
77 3 0.03
78 88 0.90
79 7 0.07
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (79 bp):
TGTGCGAGTTGTGATATCCGGGCTAAACCCGAAGGCAAATGGTACGAACTATGATATCCGGGCTA
AGCCCGAAGGCAAT
Found at i:71978847 original size:42 final size:42
Alignment explanation
Indices: 71978788--71978869 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
71978778 TAAGAAAACT
71978788 TAGAAAATTTTCTTGATTTGGAGAGTCACAAGCCCATGTGAA
1 TAGAAAATTTTCTTGATTTGGAGAGTCACAAGCCCATGTGAA
* *
71978830 TAGAAAATTTTCTTGATTTGGAGAGTCACACGCCCGTGTG
1 TAGAAAATTTTCTTGATTTGGAGAGTCACAAGCCCATGTG
71978870 GGTAGTCTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
TAGAAAATTTTCTTGATTTGGAGAGTCACAAGCCCATGTGAA
Found at i:71980141 original size:44 final size:45
Alignment explanation
Indices: 71980078--71980167 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
71980068 CCAAAACATG
* *
71980078 TGTCACAGACATCATGAACTCA-ACCACAACTCAGTGAGTTTAGA
1 TGTCACAAACATCATGAACTCAGACCACAACTCAGTGAGTTCAGA
* *
71980122 TGTCACAAATATCATGAACTCAGACCATAACTCAGTGAGTTCAGA
1 TGTCACAAACATCATGAACTCAGACCACAACTCAGTGAGTTCAGA
71980167 T
1 T
71980168 CACGATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 20 0.49
45 21 0.51
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (45 bp):
TGTCACAAACATCATGAACTCAGACCACAACTCAGTGAGTTCAGA
Found at i:71987801 original size:22 final size:22
Alignment explanation
Indices: 71987776--71987820 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
71987766 GAATATTTTC
*
71987776 CAACTTTTATTTTTGCCACGTT
1 CAACTTTTATTTCTGCCACGTT
*
71987798 CAACTTTTATTTCTGCCGCGTT
1 CAACTTTTATTTCTGCCACGTT
71987820 C
1 C
71987821 TTAGTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.27, G:0.11, T:0.47
Consensus pattern (22 bp):
CAACTTTTATTTCTGCCACGTT
Found at i:71988066 original size:17 final size:18
Alignment explanation
Indices: 71988044--71988079 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
71988034 GTCACATTGA
71988044 TGTGTTTT-AGTGAAAAC
1 TGTGTTTTCAGTGAAAAC
*
71988061 TGTGTTTTCATTGAAAAC
1 TGTGTTTTCAGTGAAAAC
71988079 T
1 T
71988080 CTTCTTAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.44
Consensus pattern (18 bp):
TGTGTTTTCAGTGAAAAC
Found at i:71989213 original size:29 final size:29
Alignment explanation
Indices: 71989147--71989257 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 29
71989137 AATTTCACAT
* * *
71989147 ACATGTATTTGGCCCATTAAG-CCTAATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
*
71989175 AAAT-TCATATGGCCCATTAGGCCCAAATC
1 ACATGT-ATATGGCCCATTAGGCCCAAATC
* *
71989204 ACCTGTATATGGCCTATTAGGCCCAAATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
* * *
71989233 ACATTTATATGGACCGTTAGGCCCA
1 ACATGTATATGGCCCATTAGGCCCA
71989258 GTCACATTCA
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 1 0.01
28 16 0.24
29 50 0.74
30 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (29 bp):
ACATGTATATGGCCCATTAGGCCCAAATC
Found at i:71990669 original size:8 final size:8
Alignment explanation
Indices: 71990656--71990690 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
71990646 AAGAAGAAAG
71990656 TTTGGGAT
1 TTTGGGAT
71990664 TTTGGGATT
1 TTTGGGA-T
71990673 TTTGGG-T
1 TTTGGGAT
71990680 TTTGGGAT
1 TTTGGGAT
71990688 TTT
1 TTT
71990691 AGGAGCGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.28
8 11 0.44
9 7 0.28
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.57
Consensus pattern (8 bp):
TTTGGGAT
Found at i:71990684 original size:16 final size:17
Alignment explanation
Indices: 71990656--71990690 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
71990646 AAGAAGAAAG
71990656 TTTGGGATTTTGGGATT
1 TTTGGGATTTTGGGATT
71990673 TTTGGG-TTTTGGGATT
1 TTTGGGATTTTGGGATT
71990689 TT
1 TT
71990691 AGGAGCGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.57
Consensus pattern (17 bp):
TTTGGGATTTTGGGATT
Found at i:71992473 original size:17 final size:18
Alignment explanation
Indices: 71992451--71992484 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71992441 TCACATTGAA
71992451 GTGTTTT-AGTGAAAACT
1 GTGTTTTCAGTGAAAACT
*
71992468 GTGTTTTCATTGAAAAC
1 GTGTTTTCAGTGAAAAC
71992485 CCTTATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACT
Found at i:72002880 original size:29 final size:28
Alignment explanation
Indices: 72002823--72002907 Score: 107
Period size: 29 Copynumber: 3.0 Consensus size: 28
72002813 TACCTGTATC
* * *
72002823 TGGCCCATTAAGCCTAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
72002851 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
72002880 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
72002908 ATCATGCTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 24 0.49
29 25 0.51
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:72002989 original size:17 final size:18
Alignment explanation
Indices: 72002967--72003000 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72002957 TGCCTATTAT
72002967 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
72002984 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
72003001 TCCGGTCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:72012584 original size:11 final size:11
Alignment explanation
Indices: 72012547--72012598 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
72012537 TTTGAGTCCA
72012547 TTTATTTTTGCT
1 TTTATTTTT-CT
**
72012559 TTTCCTTTT-T
1 TTTATTTTTCT
72012569 TTTATTTTTCT
1 TTTATTTTTCT
*
72012580 TTTATTTTTAT
1 TTTATTTTTCT
72012591 TTCTATTT
1 TT-TATTT
72012599 CCAGTTTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
10 8 0.24
11 13 0.39
12 12 0.36
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTATTTTTCT
Found at i:72019353 original size:93 final size:93
Alignment explanation
Indices: 72019225--72019395 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72019215 GCCCCTAAGT
* * *
72019225 GAACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72019290 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
72019318 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72019382 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
72019396 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:72019389 original size:46 final size:46
Alignment explanation
Indices: 72019220--72019392 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
72019210 AACCCGCCCC
* * *
72019220 TAAGTGAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* * *
72019266 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
72019314 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
72019359 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72019393 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 58 0.55
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:72021031 original size:43 final size:43
Alignment explanation
Indices: 72020907--72021031 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
72020897 GGTATCGTAC
* * * * *
72020907 CAATCCCATATCCCATATATGGTCTTAAATGT-GATCTCGTAT
1 CAATGCCATATCCCAGATATGGTCTTACATGTAAATCTCATAT
* * *
72020949 CAATGCCAATAGCCCAGCTATGGTCTTACATG-AAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACATGTAAATCTCATAT
* * *
72020992 CGATGCCATATCCAAGATATGGTCTTACACGTAAATCTCA
1 CAATGCCATATCCCAGATATGGTCTTACATGTAAATCTCA
72021032 ATAACTCTAA
Statistics
Matches: 66, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
42 26 0.39
43 40 0.61
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (43 bp):
CAATGCCATATCCCAGATATGGTCTTACATGTAAATCTCATAT
Found at i:72031696 original size:46 final size:46
Alignment explanation
Indices: 72031646--72031818 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
72031636 TGGTTGAGCA
72031646 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72031692 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
72031737 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72031785 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72031819 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72031802 original size:93 final size:93
Alignment explanation
Indices: 72031643--72031813 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
72031633 GGATGGTTGA
***
72031643 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
72031708 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72031736 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
72031801 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72031814 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72039268 original size:46 final size:46
Alignment explanation
Indices: 72039218--72039390 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
72039208 TGGTTGAGCA
72039218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72039264 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72039309 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72039357 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72039391 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72039374 original size:93 final size:93
Alignment explanation
Indices: 72039215--72039385 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
72039205 GGATGGTTGA
* *
72039215 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72039280 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72039308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72039373 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72039386 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72047179 original size:22 final size:22
Alignment explanation
Indices: 72047154--72047195 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
72047144 TGCTTCCTCG
72047154 ATACAGATCCGACCCTTCACCA
1 ATACAGATCCGACCCTTCACCA
72047176 ATACAGATCCGACCCTTCAC
1 ATACAGATCCGACCCTTCAC
72047196 ACGTAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.40, G:0.10, T:0.19
Consensus pattern (22 bp):
ATACAGATCCGACCCTTCACCA
Found at i:72049124 original size:21 final size:20
Alignment explanation
Indices: 72049086--72049124 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
72049076 CAAAACTTGT
*
72049086 ATAACTATCATCACACATTC
1 ATAACTATCATCAAACATTC
*
72049106 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
72049125 CAAAACACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:72052906 original size:39 final size:40
Alignment explanation
Indices: 72052794--72053013 Score: 317
Period size: 40 Copynumber: 5.6 Consensus size: 40
72052784 TACTCGTTCG
*
72052794 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACA
* *
72052834 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
*
72052874 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
72052913 AATGCCTTCGGG-CTTAGCCCGGA-TTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
* *
72052951 AATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACA
72052992 AA-GCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
72053014 TCATCATTCG
Statistics
Matches: 165, Mismatches: 9, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
37 2 0.01
38 24 0.15
39 57 0.35
40 69 0.42
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
Found at i:72052974 original size:117 final size:120
Alignment explanation
Indices: 72052794--72053013 Score: 333
Period size: 117 Copynumber: 1.9 Consensus size: 120
72052784 TACTCGTTCG
*
72052794 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
72052859 TTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACA
66 TTAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
* **
72052913 AATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
72052975 TTTAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
65 TTTAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
72053014 TCATCATTCG
Statistics
Matches: 92, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
116 3 0.03
117 53 0.58
118 24 0.26
119 12 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACA
Found at i:72060975 original size:78 final size:80
Alignment explanation
Indices: 72060849--72061030 Score: 255
Period size: 78 Copynumber: 2.3 Consensus size: 80
72060839 TACTCGTTCA
* *
72060849 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
*
72060913 TTTAGTAAC-TCGCACC
65 TTTAGTAACTTAGCA-C
**
72060929 AATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
72060992 TTAGTCACTTAGCAC
66 TTAGTAACTTAGCAC
*
72061007 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
72061031 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 52 0.57
79 25 0.27
80 12 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
TTAGTAACTTAGCAC
Found at i:72061030 original size:40 final size:40
Alignment explanation
Indices: 72060847--72061030 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
72060837 GCTACTCGTT
*
72060847 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
72060887 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
72060927 CCAATGCCTTCGGG-CTTAGCCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
72060965 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
72061006 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72061031 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
37 2 0.02
38 23 0.18
39 20 0.16
40 71 0.55
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:72065884 original size:40 final size:40
Alignment explanation
Indices: 72065810--72065987 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
72065800 GAGTCACGTA
** *
72065810 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
72065849 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
72065889 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
72065929 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
72065969 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
72065988 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:72074007 original size:40 final size:40
Alignment explanation
Indices: 72073933--72074110 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
72073923 GAGTCACGTA
** *
72073933 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
72073972 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
72074012 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
72074052 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
72074092 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
72074111 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:72079394 original size:29 final size:28
Alignment explanation
Indices: 72079360--72079462 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72079350 TACTCAATCA
*
72079360 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCATGT-ATTCAAGCT
* * *
72079389 CGCACACATAGTGCCATGTAGTCCAAACT
1 CGCACACTTAGTGCCATGTA-TTCAAGCT
**
72079418 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCATGTATT-CAAGCT
*
72079447 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72079463 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGTATTCAAGCT
Found at i:72088306 original size:49 final size:49
Alignment explanation
Indices: 72088140--72088362 Score: 275
Period size: 49 Copynumber: 4.5 Consensus size: 49
72088130 TGAGGTTGCA
* * * * *
72088140 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * * **
72088191 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
72088241 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * * * *
72088290 TGTGTAGTACTAAGTGCAGGTTACTAAGTGTGCCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
72088339 TGTGTAGTACTATGTGCAGGCTAC
1 TGTGTAGTACTAAGTGCAGGCTAC
72088363 CATGCGTACC
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 74 0.49
50 44 0.29
51 32 0.21
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:72105632 original size:43 final size:47
Alignment explanation
Indices: 72105585--72105709 Score: 127
Period size: 48 Copynumber: 2.7 Consensus size: 47
72105575 TGTAATTTTG
* *
72105585 TGTAAGACCATAGT-TGGG-C-T-ATTGGCATCGATCTACTATTCCA
1 TGTAAGACCATAGTCTGGGACATGATTGGCATCGATCTACGATCCCA
*
72105628 TGTAATACCAT-GTCTGGGACATGGCATTGGCATCGATCTACGATCCCA
1 TGTAAGACCATAGTCTGGGACAT-G-ATTGGCATCGATCTACGATCCCA
* *
72105676 CGTAAGACCATA-TCTGGGATATGGCATTGGCATC
1 TGTAAGACCATAGTCTGGGACAT-G-ATTGGCATC
72105710 CTACCATGTG
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
42 2 0.03
43 14 0.20
44 1 0.01
45 1 0.01
48 51 0.74
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
TGTAAGACCATAGTCTGGGACATGATTGGCATCGATCTACGATCCCA
Found at i:72105662 original size:48 final size:48
Alignment explanation
Indices: 72105605--72105709 Score: 156
Period size: 48 Copynumber: 2.2 Consensus size: 48
72105595 TAGTTGGGCT
* * * * *
72105605 ATTGGCATCGATCTACTATTCCATGTAATACCATGTCTGGGACATGGC
1 ATTGGCATCGATCTACGATCCCACGTAAGACCATATCTGGGACATGGC
*
72105653 ATTGGCATCGATCTACGATCCCACGTAAGACCATATCTGGGATATGGC
1 ATTGGCATCGATCTACGATCCCACGTAAGACCATATCTGGGACATGGC
72105701 ATTGGCATC
1 ATTGGCATC
72105710 CTACCATGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (48 bp):
ATTGGCATCGATCTACGATCCCACGTAAGACCATATCTGGGACATGGC
Found at i:72109664 original size:20 final size:20
Alignment explanation
Indices: 72109639--72109682 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
72109629 GTGATGGTAA
*
72109639 GATAGTGTAACAAAGTTTCC
1 GATAGTGTAACAAAGTCTCC
*
72109659 GATAGTGTGACAAAGTCTCC
1 GATAGTGTAACAAAGTCTCC
72109679 GATA
1 GATA
72109683 ATCCTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (20 bp):
GATAGTGTAACAAAGTCTCC
Found at i:72115129 original size:29 final size:28
Alignment explanation
Indices: 72115037--72115138 Score: 80
Period size: 29 Copynumber: 3.5 Consensus size: 28
72115027 TACTCAATCA
* *
72115037 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
72115066 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
*
72115095 CACACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
72115124 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
72115139 AATCTCGTCA
Statistics
Matches: 56, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
27 2 0.04
28 3 0.05
29 51 0.91
ACGTcount: A:0.28, C:0.34, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:72119980 original size:45 final size:44
Alignment explanation
Indices: 72119896--72120007 Score: 147
Period size: 45 Copynumber: 2.5 Consensus size: 44
72119886 GGCATTTCGA
* *
72119896 CTGCTAGGCTCAAAGCCCG-ATATCATTTCACCGATATTATAGC
1 CTGCTAGGCTCAAAGCCCGAATATCATCTCACCGACATTATAGC
*
72119939 CTGCTAGGCTCGAAAGCCCGAATAGT-ATCTCACCGGCATTATAGC
1 CTGCTAGGCTC-AAAGCCCGAATA-TCATCTCACCGACATTATAGC
*
72119984 CTGCTAGGCTTAAAGGCCCGAATA
1 CTGCTAGGCTCAAA-GCCCGAATA
72120008 ATACTGTGCG
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
43 11 0.18
44 11 0.18
45 38 0.62
46 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (44 bp):
CTGCTAGGCTCAAAGCCCGAATATCATCTCACCGACATTATAGC
Found at i:72120866 original size:47 final size:46
Alignment explanation
Indices: 72120811--72120905 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 46
72120801 AAAATTTTCT
*
72120811 TTAACTAAGTAACTTATCCGGAAATAATAAGGGAAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATAATAAGAG-AAATTTAACAAGC
* *
72120858 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATAATAAGAGAAATTTAACAAGC
72120904 TT
1 TT
72120906 TAAATTCAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 14 0.31
47 31 0.69
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGGAAATAATAAGAGAAATTTAACAAGC
Found at i:72123585 original size:17 final size:17
Alignment explanation
Indices: 72123543--72123577 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72123533 CTTTCTTGCT
72123543 CGGAGACAATGGCAACC
1 CGGAGACAATGGCAACC
72123560 CGGAGACAATGGCAACC
1 CGGAGACAATGGCAACC
72123577 C
1 C
72123578 AGGTACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.31, G:0.29, T:0.06
Consensus pattern (17 bp):
CGGAGACAATGGCAACC
Found at i:72123963 original size:688 final size:672
Alignment explanation
Indices: 72122648--72124001 Score: 2174
Period size: 688 Copynumber: 2.0 Consensus size: 672
72122638 AGCGGTGCTA
*
72122648 AAATACAACTTAGTACCCAATGCTTCTTGTAATTTCTTCCAAAACCGCGATGTGAATCTCAAATC
1 AAATACAACTTAGTACCCAATGCTTCTTGCAATTTCTTCCAAAACCGCGATGTGAATCTCAAATC
*
72122713 TCTATCCGACACAATAGAAGTAGGTACCCCGTGTAACCTTACAATCTGAAAAACATACAATTCGG
66 TCTATCCGACACAATAGAAGTAGGTACCCCGTGTAACCTTACAATCTGAAAAACATACAATTCGA
**
72122778 CTAACTTATCAAGTGAATAATCCATACGTACAAGAATAAAATGAGCTGACTTTGTCAATCTATCA
131 CTAACTTATCAAGTGAATAATCCATACGTACAAGAATAAAATGAGCCAACTTTGTCAATCTATCA
* *
72122843 ACCACAACCCAGATTAAATCTTTCTTGCTCGAAGACAATGGCAACCCGGATACAAAATCCATCGT
196 ACCACAACCCAAATCAAATCTTTCTTGCTCGAAGACAATGGCAACCCGGATACAAAATCCATCGT
* *
72122908 GATTCGATCCCACTTCCACTCAGGTATCATGATCGGCTGAAGTAATCCCGAAGGCACTTGATGTT
261 GATTCCATCCCACTTCCACTCAGGTATCATGATCGGATGAAGTAATCCCGAAGGCACTTGATGTT
* * *
72122973 CCGTTTTCACTTGTTGACATATCAAACACTTCGAAACAAAGTCAGAAATGTCTTGTTTCATACCA
326 CCGCTTTCACTTGTTGACATATCAAACACTTCGAAACAAAGTCAGAAATGTCTCGTTTAATACCA
*
72123038 TGCCACCAATACTGACGTTTCAGATCGTTGTACATTTTCGTACTACCCGGGTGAATTGACATTCG
391 TGCCACCAATACTGACGTTTCAGATCGTTGTACATTTTCGTACTACCCGGGTGAATTGACATTCA
* *
72123103 GCTGCTATGAGCCTCGCTCAAAATCATCGGAATAAGCTCTGAATTTCTCGGAACACATAATCGAT
456 GCTGCTATGAGCCTCGCTCAAAATCATCAGAATAAGCTCTGAATTTCTCAGAACACATAATCGAT
*
72123168 TTCTGAACCTCAAACAATCATTACTATCAATTAAAAATTCTGAATCCTCTATCGAAACACATAGT
521 TTCTGAACCTCAAACAATCATTACTATCAATTAAAAATTCTAAATCCTCTATCGAAACACATAGT
* *
72123233 GCTCGTTTTAGAACTCATTCATTATCAACTTTTTCAGCTTCACGGATTTGTTGCATCCATAACGG
586 GCTCGTTTTAGAACTAATTCATTATCAACTTTTTCAGCTTCACGGATTTGTTGCATCAATAACGG
72123298 TTTTGCTTTTAACTCCACTACT
651 TTTTGCTTTTAACTCCACTACT
* * **
72123320 AAATGCAACTTAGTA-CCAATGCTTCTTGCAATTTCTTCCAAAATCGC-ATTGTGAATCTCGGAT
1 AAATACAACTTAGTACCCAATGCTTCTTGCAATTTCTTCCAAAACCGCGA-TGTGAATCTCAAAT
* *
72123383 CTCTATCCGATACAATAGAAGTAGGTACCCCGTGTAACCTTACAATCTGAGAAACATACAATTCG
65 CTCTATCCGACACAATAGAAGTAGGTACCCCGTGTAACCTTACAATCTGAAAAACATACAATTCG
* ***
72123448 ACTAACTTATCAAGTGAATAATCCGTACGTATGGGAATAAAATGAGCCAACTTTGTCAATCTATC
130 ACTAACTTATCAAGTGAATAATCCATACGTACAAGAATAAAATGAGCCAACTTTGTCAATCTATC
** *
72123513 AACCACAACCCAAATCGCATCTTTCTTGCTCGGAGACAATGGCAACCCGGAGACAATGGCAACCC
195 AACCACAACCCAAATCAAATCTTTCTTGCTCGAAGACAATGGCAA-CC-----C---GG------
*
72123578 AGGTACAAAATCCATCGTGATTCCATCCCACTTCCACTCGGGTATCATGATCGGATGAAGTAATC
245 A--TACAAAATCCATCGTGATTCCATCCCACTTCCACTCAGGTATCATGATCGGATGAAGTAATC
*
72123643 CCGAAGGCACTTGATGTTCCGCTTTCACTTGTTGACATATCAAACAGTTCGAAACAAAGTCAGAA
308 CCGAAGGCACTTGATGTTCCGCTTTCACTTGTTGACATATCAAACACTTCGAAACAAAGTCAGAA
*
72123708 ATGTCTCGTTTAATACCATGCCACCAATACTGACGTTTTAGATCGTTGTACATTTTCGTACTACC
373 ATGTCTCGTTTAATACCATGCCACCAATACTGACGTTTCAGATCGTTGTACATTTTCGTACTACC
72123773 CGGGTGAATTGACATTCAGCTGCTATGAGCCTCGCTCAAAATCATCAGAATAAGCTCTGAATTTC
438 CGGGTGAATTGACATTCAGCTGCTATGAGCCTCGCTCAAAATCATCAGAATAAGCTCTGAATTTC
*
72123838 TCAGAACACATAATCGATTTCTGAGCCTCAAACAATCATTACTATCAATTAAAAATTCTAAATCC
503 TCAGAACACATAATCGATTTCTGAACCTCAAACAATCATTACTATCAATTAAAAATTCTAAATCC
* *
72123903 TCTATCGAAACACATAGTGCTCGTTTT-GCAACTAATTCATTATCAATTTTTTGAGCTTCACGGA
568 TCTATCGAAACACATAGTGCTCGTTTTAG-AACTAATTCATTATCAACTTTTTCAGCTTCACGGA
* *
72123967 TTTGTTGCATTAATAACGGTTTTTCTTTTAACTCC
632 TTTGTTGCATCAATAACGGTTTTGCTTTTAACTCC
72124002 GCTATTAACA
Statistics
Matches: 625, Mismatches: 38, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
670 1 0.00
671 203 0.32
672 16 0.03
677 1 0.00
680 2 0.00
686 1 0.00
687 1 0.00
688 400 0.64
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (672 bp):
AAATACAACTTAGTACCCAATGCTTCTTGCAATTTCTTCCAAAACCGCGATGTGAATCTCAAATC
TCTATCCGACACAATAGAAGTAGGTACCCCGTGTAACCTTACAATCTGAAAAACATACAATTCGA
CTAACTTATCAAGTGAATAATCCATACGTACAAGAATAAAATGAGCCAACTTTGTCAATCTATCA
ACCACAACCCAAATCAAATCTTTCTTGCTCGAAGACAATGGCAACCCGGATACAAAATCCATCGT
GATTCCATCCCACTTCCACTCAGGTATCATGATCGGATGAAGTAATCCCGAAGGCACTTGATGTT
CCGCTTTCACTTGTTGACATATCAAACACTTCGAAACAAAGTCAGAAATGTCTCGTTTAATACCA
TGCCACCAATACTGACGTTTCAGATCGTTGTACATTTTCGTACTACCCGGGTGAATTGACATTCA
GCTGCTATGAGCCTCGCTCAAAATCATCAGAATAAGCTCTGAATTTCTCAGAACACATAATCGAT
TTCTGAACCTCAAACAATCATTACTATCAATTAAAAATTCTAAATCCTCTATCGAAACACATAGT
GCTCGTTTTAGAACTAATTCATTATCAACTTTTTCAGCTTCACGGATTTGTTGCATCAATAACGG
TTTTGCTTTTAACTCCACTACT
Found at i:72133527 original size:21 final size:20
Alignment explanation
Indices: 72133499--72133537 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
72133489 CAATTCTTGT
72133499 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
72133519 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
72133538 CAAAACATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:72142189 original size:42 final size:42
Alignment explanation
Indices: 72142130--72142214 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
72142120 ACGGTCCTGT
72142130 TTCAAATCTAAAAACTCCTTACATTTTTATTCAATGAAACAA
1 TTCAAATCTAAAAACTCCTTACATTTTTATTCAATGAAACAA
72142172 TTCAAATCTAAAAACTCCTTACATTTTTATTCAATGAAACAA
1 TTCAAATCTAAAAACTCCTTACATTTTTATTCAATGAAACAA
72142214 T
1 T
72142215 CACTGATATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.36
Consensus pattern (42 bp):
TTCAAATCTAAAAACTCCTTACATTTTTATTCAATGAAACAA
Found at i:72147155 original size:17 final size:17
Alignment explanation
Indices: 72147119--72147159 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
72147109 ATGTGCCCTC
72147119 TCTTTTTTTCTTCTTCT
1 TCTTTTTTTCTTCTTCT
*
72147136 TCTTTGTTTTTTTCTT-T
1 TCTTT-TTTTCTTCTTCT
72147153 TCTTTTT
1 TCTTTTT
72147160 AGCTAACACG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.80
Consensus pattern (17 bp):
TCTTTTTTTCTTCTTCT
Found at i:72149770 original size:29 final size:29
Alignment explanation
Indices: 72149721--72149785 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
72149711 GTGACGAGAT
** * *
72149721 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCAAGCTGAAAAAATA
*
72149750 TGGCACTAAGTGTGCAAGCTGAAAAAATA
1 CGGCACTAAGTGTGCAAGCTGAAAAAATA
72149779 CGGCACT
1 CGGCACT
72149786 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCAAGCTGAAAAAATA
Found at i:72152491 original size:3 final size:3
Alignment explanation
Indices: 72152478--72152509 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
72152468 TTTATGTAGA
72152478 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
72152510 GAAGGAGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:72160668 original size:28 final size:28
Alignment explanation
Indices: 72160599--72160699 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72160589 GACAAGATTG
* * * *
72160599 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72160629 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72160657 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72160686 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72160700 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72168623 original size:28 final size:28
Alignment explanation
Indices: 72168554--72168654 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
72168544 GACAAGATTG
* * * *
72168554 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
72168584 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72168612 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
72168641 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
72168655 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72175922 original size:92 final size:94
Alignment explanation
Indices: 72175760--72175972 Score: 225
Period size: 94 Copynumber: 2.3 Consensus size: 94
72175750 AGGTCAACGC
* * ** * * *
72175760 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCTTGTCCTAGACGTG
1 CATGTCCCAAACAT-GTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCTAGACATC
* *
72175825 GTCTTACACTAACAC-AT-CTCGTAGCCGATG
64 ATCTTACACTAACACTATAAT-GTAGCCGATG
* * *
72175855 CATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCAATGCTGATGCCATGTCCTAGACATCAT
1 CATGTCCCAAACATGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCTAGACATCAT
** * *
72175919 CTTACACTGGCTCTTATAATGTGGCCGATG
66 CTTACACTAACAC-TATAATGTAGCCGATG
72175949 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAAACATGTCTTACACT
72175973 GGCACACAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
92 35 0.35
94 51 0.52
95 13 0.13
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (94 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCTAGACATCAT
CTTACACTAACACTATAATGTAGCCGATG
Found at i:72175974 original size:46 final size:45
Alignment explanation
Indices: 72175848--72175975 Score: 134
Period size: 47 Copynumber: 2.8 Consensus size: 45
72175838 ACATCTCGTA
* *
72175848 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTC-TATCAAT
* * * *
72175894 GCTGATGCCATGTCCTAGACATCATCTTACACTGGCTCT-TAT-AATGT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCTATCAA--T
72175941 GGCCGATGCATGTCCCAAACATGTCTTACACTGGC
1 -GCCGATGCATGTCCCAAACATGTCTTACACTGGC
72175976 ACACAAATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
45 2 0.03
46 20 0.30
47 25 0.37
48 20 0.30
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCTATCAAT
Found at i:72178246 original size:21 final size:23
Alignment explanation
Indices: 72178199--72178252 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
72178189 CACTCAAGAT
**
72178199 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
72178222 AAAATAATATAT-AAA-TAATTC
1 AAAATAATATATAAAACTAATTA
72178243 AAAAT-ATATA
1 AAAATAATATA
72178253 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 8 0.29
22 3 0.11
23 12 0.43
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:72178481 original size:21 final size:21
Alignment explanation
Indices: 72178455--72178582 Score: 70
Period size: 21 Copynumber: 5.9 Consensus size: 21
72178445 ATATTAGTTT
72178455 ATAAATAGAAATAAAAATATA
1 ATAAATAGAAATAAAAATATA
72178476 ATAAATAGAAATATAATAATAGT-
1 ATAAATAGAAATA-AA-AATA-TA
* * *
72178499 AGAAATATAAATAGATAA-ATA
1 ATAAATAGAAATA-AAAATATA
*
72178520 ATAATTAG--ATAAATAATAATA
1 ATAAATAGAAATAAA-AAT-ATA
* *
72178541 AT-ATTAG-AATAAAAAATAAA
1 ATAAATAGAAAT-AAAAATATA
72178561 TATAAATAGAAACATAAAAATA
1 -ATAAATAG-AA-ATAAAAATA
72178583 ATAGCAATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 25
0.70 0.08 0.21
Matches are distributed among these distances:
18 1 0.01
19 5 0.06
20 8 0.10
21 31 0.37
22 11 0.13
23 16 0.19
24 9 0.11
25 2 0.02
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.27
Consensus pattern (21 bp):
ATAAATAGAAATAAAAATATA
Found at i:72178503 original size:17 final size:15
Alignment explanation
Indices: 72178463--72178508 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
72178453 TTATAAATAG
*
72178463 AAATAAAAATATAAT
1 AAATAGAAATATAAT
72178478 AAATAGAAATATAAT
1 AAATAGAAATATAAT
72178493 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
72178509 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:72178518 original size:8 final size:7
Alignment explanation
Indices: 72178501--72178585 Score: 54
Period size: 8 Copynumber: 12.1 Consensus size: 7
72178491 ATAATAGTAG
72178501 AAAT-AT
1 AAATAAT
72178507 AAATAGAT
1 AAATA-AT
72178515 AAATAAT
1 AAATAAT
*
72178522 AATTAGAT
1 AAATA-AT
72178530 AAATAAT
1 AAATAAT
72178537 -AATAAT
1 AAATAAT
* *
72178543 ATTAGAAT
1 A-AATAAT
*
72178551 AAAAAAT
1 AAATAAT
72178558 AAAT-AT
1 AAATAAT
72178564 AAATAGA-
1 AAATA-AT
72178571 AACATAA-
1 AA-ATAAT
72178578 AAATAAT
1 AAATAAT
72178585 A
1 A
72178586 GCAATAATAT
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
6 20 0.32
7 21 0.33
8 22 0.35
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (7 bp):
AAATAAT
Found at i:72178523 original size:15 final size:15
Alignment explanation
Indices: 72178473--72178582 Score: 76
Period size: 15 Copynumber: 7.7 Consensus size: 15
72178463 AAATAAAAAT
72178473 ATAATAAATAGA-AA
1 ATAATAAATAGATAA
*
72178487 TATAAT-AATAGTAGAA
1 -ATAATAAATAG-ATAA
72178503 AT-ATAAATAGATAA
1 ATAATAAATAGATAA
*
72178517 ATAATAATTAGATAA
1 ATAATAAATAGATAA
*
72178532 ATAAT-AATA-ATATT
1 ATAATAAATAGATA-A
* *
72178546 AGAATAAA-AAATAA
1 ATAATAAATAGATAA
72178560 AT-ATAAATAGA-AA
1 ATAATAAATAGATAA
72178573 CATAA-AAATA
1 -ATAATAAATA
72178583 ATAGCAATAA
Statistics
Matches: 77, Mismatches: 8, Indels: 21
0.73 0.08 0.20
Matches are distributed among these distances:
13 10 0.13
14 30 0.39
15 35 0.45
16 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.27
Consensus pattern (15 bp):
ATAATAAATAGATAA
Found at i:72178540 original size:29 final size:30
Alignment explanation
Indices: 72178473--72178538 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 30
72178463 AAATAAAAAT
72178473 ATAATAAATAGAAATATAATAATAGTAGAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
*
72178503 AT-ATAAATAGATAA-ATAATAATTAG-ATAA
1 ATAATAAATAGA-AATATAATAA-TAGTAGAA
72178532 ATAATAA
1 ATAATAA
72178539 TAATATTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 21 0.66
30 11 0.34
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.29
Consensus pattern (30 bp):
ATAATAAATAGAAATATAATAATAGTAGAA
Found at i:72179765 original size:85 final size:86
Alignment explanation
Indices: 72179600--72180290 Score: 952
Period size: 85 Copynumber: 8.1 Consensus size: 86
72179590 TACCCTACTA
* * * * **
72179600 TTAAGGCTCACTGTCCTCGATCTGCTCCACTTCTGCTTAGGGAGATAAGATCTGTAACTT--AGC
1 TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTA-GG-GATAAGATCTGTATTTTCCAGC
* *
72179663 CTGTTACCCT-CTACTTAGGGGA
64 CTGTTACCCTACTGCTTAGGGGG
* * * * *
72179685 TTAAGGCTCACTATCCTT-GATCTGATCCACTACTGTTTAGGGCTAAGATCTGTATTTT-CATCC
1 TTAAGGCTCGCTGT-CTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCC
72179748 TGTTACCCTACTGCTTAGGGGG
65 TGTTACCCTACTGCTTAGGGGG
* * * * *
72179770 TTAAGGCTTGTTGTCTTTGATCTCCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCTT
1 TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
72179835 GTTACCCTACTGCTTAGGGGG
66 GTTACCCTACTGCTTAGGGGG
* ** * * *
72179856 TTAAGGCTCACCATCTTCGATCTGCTGCACTACTATTTAGGGATAAAATCTGTATTTTCCAGCCT
1 TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
72179921 GTTACCCTACTGCTTA-GGGG
66 GTTACCCTACTGCTTAGGGGG
*
72179941 TTAAGGCTCGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
1 TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
72180006 GTTACCCTACTGCTTAGGGGG
66 GTTACCCTACTGCTTAGGGGG
*
72180027 TTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGT-TTTTCCAGCCT
1 TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
*
72180091 ATTACCCTACTGCTTA-GGGG
66 GTTACCCTACTGCTTAGGGGG
* * * *
72180111 TTAAGGCTCGCTGTCTTCGATATGTTCCACTACTGTTTAGGGATAAGATCTGTATTTT-TAACCT
1 TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
72180175 GTTACCCTACTGCTTAGGGGG
66 GTTACCCTACTGCTTAGGGGG
* * * *
72180196 TTAAGGCTCGCTGTCTTCGATCTGTTTCACTACTGTTTAGGGATAAGATCTATATTTT-TAGCCT
1 TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
* *
72180260 ATTACCTTACTGCTTAGGGGG
66 GTTACCCTACTGCTTAGGGGG
72180281 TTAAGGCTCG
1 TTAAGGCTCG
72180291 TATCTTTAGC
Statistics
Matches: 545, Mismatches: 53, Indels: 16
0.89 0.09 0.03
Matches are distributed among these distances:
83 14 0.03
84 90 0.17
85 289 0.53
86 152 0.28
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (86 bp):
TTAAGGCTCGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
GTTACCCTACTGCTTAGGGGG
Found at i:72179897 original size:171 final size:170
Alignment explanation
Indices: 72179600--72180290 Score: 944
Period size: 171 Copynumber: 4.1 Consensus size: 170
72179590 TACCCTACTA
* * * * * **
72179600 TTAAGGCTCACTGTCCTCGATCTGCTCCACTTCTGCTTAGGGAGATAAGATCTGTAACTT-AGCC
1 TTAAGGCTCGCTGTCTTTGATCTGCTCCACTACTGTTTA-GG-GATAAGATCTGTATTTTCAGCC
* * *
72179664 TGTTACCCT-CTACTTAGGGGATTAAGGCTCACTATCCTT-GATCTGATCCACTACTGTTTAGGG
64 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACTAT-CTTCGATCTGCTCCACTACTGTTTAGGG
* * *
72179727 CTAAGATCTGTATTTT-CATCCTGTTACCCTACTGCTTAGGGGG
128 ATAAGATCTGTATTTTCCAGCCTATTACCCTACTGCTTA-GGGG
* * * *
72179770 TTAAGGCTTGTTGTCTTTGATCTCCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCTT
1 TTAAGGCTCGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTT-CAGCCT
* * *
72179835 GTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTCGATCTGCTGCACTACTATTTAGGGAT
65 GTTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTGCTCCACTACTGTTTAGGGAT
* *
72179900 AAAATCTGTATTTTCCAGCCTGTTACCCTACTGCTTAGGGG
130 AAGATCTGTATTTTCCAGCCTATTACCCTACTGCTTAGGGG
72179941 TTAAGGCTCGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCCAGCCT
1 TTAAGGCTCGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTT-CAGCCT
** *
72180006 GTTACCCTACTGCTTAGGGGGTTAAGGCTTGCTGTCTTCGATCTGCTCCACTACTGTTTAGGGAT
65 GTTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTGCTCCACTACTGTTTAGGGAT
72180071 AAGATCTGT-TTTTCCAGCCTATTACCCTACTGCTTAGGGG
130 AAGATCTGTATTTTCCAGCCTATTACCCTACTGCTTAGGGG
* * * * *
72180111 TTAAGGCTCGCTGTCTTCGATATGTTCCACTACTGTTTAGGGATAAGATCTGTATTTTTAACCTG
1 TTAAGGCTCGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCAGCCTG
* * * *
72180176 TTACCCTACTGCTTAGGGGGTTAAGGCTCGCTGTCTTCGATCTGTTTCACTACTGTTTAGGGATA
66 TTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTGCTCCACTACTGTTTAGGGATA
* * *
72180241 AGATCTATATTTT-TAGCCTATTACCTTACTGCTTAGGGGG
131 AGATCTGTATTTTCCAGCCTATTACCCTACTGCTTA-GGGG
72180281 TTAAGGCTCG
1 TTAAGGCTCG
72180291 TATCTTTAGC
Statistics
Matches: 471, Mismatches: 43, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
168 15 0.03
169 96 0.20
170 149 0.32
171 190 0.40
172 21 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (170 bp):
TTAAGGCTCGCTGTCTTTGATCTGCTCCACTACTGTTTAGGGATAAGATCTGTATTTTCAGCCTG
TTACCCTACTGCTTAGGGGGTTAAGGCTCACTATCTTCGATCTGCTCCACTACTGTTTAGGGATA
AGATCTGTATTTTCCAGCCTATTACCCTACTGCTTAGGGG
Found at i:72180640 original size:64 final size:65
Alignment explanation
Indices: 72180537--72180663 Score: 204
Period size: 64 Copynumber: 2.0 Consensus size: 65
72180527 ATGTATTTAT
*
72180537 GCTTATGCCCAAATAACTAGGATGCTATGATCAAGATGAATCAAATGCTCCTAACTAGATGTGAC
1 GCTTATGCCCAAATAACTAGGATGCTATGATCAAGATGAATCAAATGCCCCTAACTAGATGTGAC
* *
72180602 GCTTATG-TCAAATAATTAGGATGCTATGATCGAA-ATGAATCAAATGCCCCTAACTAGATGTG
1 GCTTATGCCCAAATAACTAGGATGCTATGATC-AAGATGAATCAAATGCCCCTAACTAGATGTG
72180664 TTATTATATG
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
64 49 0.84
65 9 0.16
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (65 bp):
GCTTATGCCCAAATAACTAGGATGCTATGATCAAGATGAATCAAATGCCCCTAACTAGATGTGAC
Found at i:72182244 original size:6 final size:6
Alignment explanation
Indices: 72182233--72182258 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
72182223 ATCTTTTTTG
72182233 TTGTTT TTGTTT TTGTTT TTGTTT TT
1 TTGTTT TTGTTT TTGTTT TTGTTT TT
72182259 TCTTTCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTGTTT
Found at i:72182284 original size:14 final size:15
Alignment explanation
Indices: 72182257--72182285 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72182247 GTTTTTGTTT
72182257 TTTCTTTCCTTTTTG
1 TTTCTTTCCTTTTTG
72182272 TTTCTTT-CTTTTTG
1 TTTCTTTCCTTTTTG
72182286 GCTACCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.00, C:0.17, G:0.07, T:0.76
Consensus pattern (15 bp):
TTTCTTTCCTTTTTG
Found at i:72185555 original size:2 final size:2
Alignment explanation
Indices: 72185548--72185581 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
72185538 ATCAAAAGTA
72185548 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72185582 CATGTCGGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72186726 original size:20 final size:20
Alignment explanation
Indices: 72186701--72186741 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
72186691 GAGTTATTCG
*
72186701 TTTAAATTTAAAGATTCATC
1 TTTAAATTCAAAGATTCATC
72186721 TTTAAATTCAAAGATTCATC
1 TTTAAATTCAAAGATTCATC
72186741 T
1 T
72186742 AAAGATGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (20 bp):
TTTAAATTCAAAGATTCATC
Found at i:72186783 original size:19 final size:19
Alignment explanation
Indices: 72186759--72186798 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
72186749 GAAGAATTTG
72186759 AAAAAA-AAAATAAAGTCAA
1 AAAAAATAAAAT-AAGTCAA
*
72186778 AAAAAATAAAATTAGTCAA
1 AAAAAATAAAATAAGTCAA
72186797 AA
1 AA
72186799 GTTTAAGCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.15
Consensus pattern (19 bp):
AAAAAATAAAATAAGTCAA
Found at i:72189166 original size:29 final size:28
Alignment explanation
Indices: 72189147--72189268 Score: 145
Period size: 29 Copynumber: 4.2 Consensus size: 28
72189137 TCGCACACCC
* * *
72189147 AGTGCCGTATTTTTCCAGCTTGCACACAT
1 AGTGCCATATATTTCCAGC-TGCACACTT
* *
72189176 AGTGTCATATTTTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
* *
72189205 AGTGCCTTATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
72189234 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGC-TGCACACTT
72189263 AGTGCC
1 AGTGCC
72189269 GATCTCGTCA
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (28 bp):
AGTGCCATATATTTCCAGCTGCACACTT
Found at i:72189201 original size:58 final size:58
Alignment explanation
Indices: 72189147--72189269 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 58
72189137 TCGCACACCC
* ** * *
72189147 AGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCATGCACACTT
1 AGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCATGCACACTT
* *
72189205 AGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCATGCACACTT
72189263 AGTGCCG
1 AGTGCCG
72189270 ATCTCGTCAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (58 bp):
AGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCATGCACACTT
Found at i:72190099 original size:143 final size:142
Alignment explanation
Indices: 72189909--72190206 Score: 553
Period size: 145 Copynumber: 2.1 Consensus size: 142
72189899 AAATTCTATA
72189909 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCC-TTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
72189973 TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
66 TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
*
72190038 GGAAGACAACAT
131 GGAAAACAACAT
72190050 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCC-T
72190115 TTTTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCAC
63 TTTTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCAC
72190180 CAAGGAAAACAACAT
128 CAAGGAAAACAACAT
72190195 GCATGGCCGAAT
1 GCATGGCCGAAT
72190207 TTTAACTCAC
Statistics
Matches: 152, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
141 19 0.12
143 42 0.28
145 91 0.60
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.22
Consensus pattern (142 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
GGAAAACAACAT
Found at i:72208799 original size:40 final size:39
Alignment explanation
Indices: 72208738--72208887 Score: 185
Period size: 40 Copynumber: 3.8 Consensus size: 39
72208728 AGATTCGAGA
* * * *
72208738 GCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAG
1 GCATTTGTGCGAG-TGTTATATCCGGGCTAAGACCCGAAG
* *
72208778 GCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAGTG-TTATATCCGGGCTAAGACCCGAAG
*
72208818 GCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAG
1 GCATTTGTGCGAG-TGTTATATCCGGGCTAAGACCCGAAG
*
72208858 GCATTTGTGCGAGTTCTTATATCC-GGCTAA
1 GCATTTGTGCGAG-TGTTATATCCGGGCTAA
72208888 ATTCCGAAGA
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 8 0.08
40 87 0.90
41 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (39 bp):
GCATTTGTGCGAGTGTTATATCCGGGCTAAGACCCGAAG
Found at i:72208858 original size:80 final size:79
Alignment explanation
Indices: 72208738--72208887 Score: 228
Period size: 80 Copynumber: 1.9 Consensus size: 79
72208728 AGATTCGAGA
* * *
72208738 GCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGTGATTATATCCG
1 GCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCC-
72208803 GGCTAAGACCCGAAG
65 GGCTAAGACCCGAAG
* * **
72208818 GCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTCTTATATCCG
1 GCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCG
72208883 GCTAA
66 GCTAA
72208888 ATTCCGAAGA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 6 0.10
80 57 0.90
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (79 bp):
GCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCG
GCTAAGACCCGAAG
Found at i:72216897 original size:40 final size:40
Alignment explanation
Indices: 72216835--72216994 Score: 200
Period size: 40 Copynumber: 4.0 Consensus size: 40
72216825 AAGATTCGAG
* * * *
72216835 GGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAA
1 GGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAA
* *
72216875 GGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCGAA
1 GGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAA
** *
72216915 GATATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAA
1 GGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAA
72216955 GGCATTTGTGCGAGTTGTTATATCC-GGCTAA-ATCCCGAA
1 GGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CCCGAA
72216994 G
1 G
72216995 ATACTTGGGT
Statistics
Matches: 103, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 15 0.15
40 85 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
GGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAA
Found at i:72216956 original size:80 final size:79
Alignment explanation
Indices: 72216842--72216997 Score: 235
Period size: 80 Copynumber: 2.0 Consensus size: 79
72216832 GAGGGCATTC
* * *
72216842 GTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTA
1 GTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATATCC-GGCTA
72216906 AGA-CCCGAAGATATTT
64 A-ATCCCGAAGATATTT
*
72216922 GTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGCTAAA
1 GTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGCTAAA
72216987 TCCCGAAGATA
66 TCCCGAAGATA
72216998 CTTGGGTTTG
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
78 1 0.01
79 16 0.23
80 51 0.73
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (79 bp):
GTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATATCCGGCTAAA
TCCCGAAGATATTT
Found at i:72217262 original size:22 final size:22
Alignment explanation
Indices: 72217222--72217263 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
72217212 GAATGTGCAT
*
72217222 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
72217244 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
72217264 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:72223823 original size:2 final size:2
Alignment explanation
Indices: 72223816--72223853 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
72223806 GCTTCGCCAC
72223816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72223854 GTTCTGGTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72226583 original size:17 final size:17
Alignment explanation
Indices: 72226549--72226583 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
72226539 AAACTTTGAG
72226549 ATTTTTCCAAAAATATA
1 ATTTTTCCAAAAATATA
72226566 ATTTATTCCAAAAA-ATA
1 ATTT-TTCCAAAAATATA
72226583 A
1 A
72226584 ACTACCACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTTTTCCAAAAATATA
Found at i:72232980 original size:13 final size:13
Alignment explanation
Indices: 72232962--72232987 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72232952 TTGGTTTCAT
72232962 ACCAAAACAATCA
1 ACCAAAACAATCA
72232975 ACCAAAACAATCA
1 ACCAAAACAATCA
72232988 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:72233885 original size:43 final size:42
Alignment explanation
Indices: 72233816--72233972 Score: 144
Period size: 43 Copynumber: 3.7 Consensus size: 42
72233806 AGCTCGTACA
* *
72233816 ATGCCAACGTCCCAGACGTGGACTTACATGTAATCACCTATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATG-AATCACCTATCG
* *
72233859 ATGCC-ACTGTCCCAGACATGGTCTTACACGAACTCA--TATACA
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGAA-TCACCTAT-CG
* * *
72233901 ATGCCGATGTCCCAGACATGGTCTTACATACAAATCACAACT-T-G
1 ATGCCAACGTCCCAGACATGGTCTTACAT--GAATCAC--CTATCG
72233945 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
72233973 CAAAATCACA
Statistics
Matches: 94, Mismatches: 10, Indels: 19
0.76 0.08 0.15
Matches are distributed among these distances:
41 3 0.03
42 30 0.32
43 31 0.33
44 28 0.30
46 1 0.01
47 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGAATCACCTATCG
Found at i:72235115 original size:13 final size:13
Alignment explanation
Indices: 72235097--72235121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72235087 ACAAACAATA
72235097 AAATTTTCACACG
1 AAATTTTCACACG
72235110 AAATTTTCACAC
1 AAATTTTCACAC
72235122 ATATCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:72237602 original size:40 final size:40
Alignment explanation
Indices: 72237517--72237667 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
72237507 AATTGAATGA
* * *
72237517 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
72237557 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
72237598 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
72237637 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
72237668 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:72237681 original size:40 final size:40
Alignment explanation
Indices: 72237554--72237683 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
72237544 ATGCTGGAAA
* * * *
72237554 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
72237594 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
72237634 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
72237674 TTATATCCGG
1 TTATATCCGG
72237684 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:72245605 original size:40 final size:40
Alignment explanation
Indices: 72245520--72245670 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
72245510 AATTGAATGA
* * *
72245520 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
72245560 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
72245601 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
72245640 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
72245671 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:72245684 original size:40 final size:40
Alignment explanation
Indices: 72245557--72245686 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
72245547 ATGCTGGAAA
* * * *
72245557 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
72245597 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
72245637 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
72245677 TTATATCCGG
1 TTATATCCGG
72245687 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:72247983 original size:40 final size:39
Alignment explanation
Indices: 72247872--72248022 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
72247862 ATAATCACGT
* * *
72247872 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
72247912 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
72247952 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
72247992 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
72248023 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:72248006 original size:80 final size:79
Alignment explanation
Indices: 72247872--72248022 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
72247862 ATAATCACGT
*
72247872 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
72247937 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
72247952 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
72248015 CCGGATAT
64 CCGGATAT
72248023 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:72255904 original size:40 final size:40
Alignment explanation
Indices: 72255859--72256025 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
72255849 CGGAATATAA
72255859 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72255899 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
72255939 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72255979 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72256018 CCGGATAT
1 CCGGATAT
72256026 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72256009 original size:80 final size:79
Alignment explanation
Indices: 72255875--72256025 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
72255865 ATAATCACGT
*
72255875 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
72255940 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
72255955 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
72256018 CCGGATAT
64 CCGGATAT
72256026 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:72266939 original size:22 final size:21
Alignment explanation
Indices: 72266890--72266941 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
72266880 TTCTGCCTAA
*
72266890 GATG-TAAATTGGATTGAATT
1 GATGTTAAATTGGATTAAATT
*
72266910 GA-GTTTAAATTGTATTCAAATT
1 GATG-TTAAATTGGATT-AAATT
72266932 GATGTTAAAT
1 GATGTTAAAT
72266942 GTACTTGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.04
20 2 0.08
21 10 0.38
22 12 0.46
23 1 0.04
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.42
Consensus pattern (21 bp):
GATGTTAAATTGGATTAAATT
Found at i:72267568 original size:57 final size:58
Alignment explanation
Indices: 72267431--72267684 Score: 172
Period size: 57 Copynumber: 4.5 Consensus size: 58
72267421 TCATTACATA
* * * * * *
72267431 TAGGATTTAGCCCGGACGGGTAATCCT-GATATAAGC-CTCTCGAGTATATATTACAGAT
1 TAGGATTTAGCCTGGACTGGTAATCCTAGAT-CAAGCTCTCTAGAGCATATGTTACA-AT
* *
72267489 T-GGATTTAACCTGAAC-GAGTAAT-CTAGATCAAGCTCTCGT-GAGCATATGTTACAAT
1 TAGGATTTAGCCTGGACTG-GTAATCCTAGATCAAGCTCTC-TAGAGCATATGTTACAAT
* * * * *
72267545 TAGGATTTAGCCTGGACTGGTAATCCTA-ATTGAA-CTCTTTAGAGCATTTGTCACAAA
1 TAGGATTTAGCCTGGACTGGTAATCCTAGA-TCAAGCTCTCTAGAGCATATGTTACAAT
* * * **
72267602 AAGGATTTAGCCTGGATTGGTAATCCT-GA-CAAAGCT-TTTAGAATATATGTTACAGA-
1 TAGGATTTAGCCTGGACTGGTAATCCTAGATC-AAGCTCTCTAGAGCATATGTTACA-AT
* * *
72267658 CAGGATTTAGCCTGGTCTGATAATCCT
1 TAGGATTTAGCCTGGACTGGTAATCCT
72267685 GTTATATAAT
Statistics
Matches: 159, Mismatches: 24, Indels: 28
0.75 0.11 0.13
Matches are distributed among these distances:
56 50 0.31
57 100 0.63
58 9 0.06
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (58 bp):
TAGGATTTAGCCTGGACTGGTAATCCTAGATCAAGCTCTCTAGAGCATATGTTACAAT
Found at i:72267669 original size:56 final size:56
Alignment explanation
Indices: 72267532--72267685 Score: 143
Period size: 56 Copynumber: 2.7 Consensus size: 56
72267522 CTCTCGTGAG
* * * ** *
72267532 CATATGTTACAATTAGGATTTAGCCTGGACTGGTAATCCTAATTGAACTCTTTAGAG
1 CATATGTTACAA-AAGGATTTAGCCTGGATTGGTAATCCTGATCAAACTCTTTAGAA
* *
72267589 CATTTGTCACAAAAAGGATTTAGCCTGGATTGGTAATCCTGA-CAAAGCT-TTTAGAA
1 CATATGTTAC-AAAAGGATTTAGCCTGGATTGGTAATCCTGATCAAA-CTCTTTAGAA
* * *
72267645 TATATGTTACAGACAGGATTTAGCCTGG-TCTGATAATCCTG
1 CATATGTTACA-AAAGGATTTAGCCTGGAT-TGGTAATCCTG
72267686 TTATATAATA
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
55 2 0.03
56 40 0.50
57 36 0.45
58 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (56 bp):
CATATGTTACAAAAGGATTTAGCCTGGATTGGTAATCCTGATCAAACTCTTTAGAA
Found at i:72270365 original size:8 final size:8
Alignment explanation
Indices: 72270352--72270378 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
72270342 ATATTTTTGC
72270352 AAAATTAT
1 AAAATTAT
72270360 AAAATTAT
1 AAAATTAT
72270368 AAAATTAT
1 AAAATTAT
72270376 AAA
1 AAA
72270379 TTCGAGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATTAT
Found at i:72297936 original size:47 final size:50
Alignment explanation
Indices: 72297882--72298151 Score: 227
Period size: 47 Copynumber: 5.7 Consensus size: 50
72297872 TGTGTGTGCT
*
72297882 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAAATGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGATGCC
* * *
72297929 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGA-GAT--G-TGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGATGCC
* * *
72297973 AGTATAAGACCATGTCTAGGACATGGCATCGG-CACGGATATATGAGA-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-GAT-TATGAGATGCC
* * * * * *
72298023 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCAATT-T-CGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGAT-GCC
*
72298072 AGTGTAAGACCATGTTTGGGACATGGCATC-G--AC--TTGATG-GATGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATT-ATGAGATG--CC
72298119 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
72298152 ATTATACCCT
Statistics
Matches: 180, Mismatches: 24, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
44 13 0.07
45 16 0.09
46 14 0.08
47 67 0.37
48 6 0.03
49 30 0.17
50 32 0.18
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGATGCC
Found at i:72298141 original size:146 final size:141
Alignment explanation
Indices: 72297879--72298152 Score: 340
Period size: 146 Copynumber: 1.9 Consensus size: 141
72297869 ATATGTGTGT
*
72297879 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAATGCCAGTGTAAGACATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAAATGCCAGTGTAAGACATGTC
* *
72297944 TGGGACATGCATCGGCTACGAGATGTGTCAGTATAAGACCATGTCTAGGACATGGCATCGGCACG
66 TGGGACATGCATCGACTACGAGATGTGCCAGTATAAGACCATGTCTAGGACATGGCATCGGCACG
72298009 GATATATGAGA
131 GATATATGAGA
* * * *
72298020 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCAATT-TCGATA-GTCAGTGTAAGACC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTAT-GAAATGCCAGTGTAAGA-C
* * * *
72298083 ATGTTTGGGACATGGCATCGACT-TGATGGATGAT-CCAGTGTAAGACCATGTCTGGGACATGGC
61 ATGTCTGGGACAT-GCATCGACTACGA--GATG-TGCCAGTATAAGACCATGTCTAGGACATGGC
72298146 ATCGGCA
122 ATCGGCA
72298153 TTATACCCTA
Statistics
Matches: 113, Mismatches: 11, Indels: 13
0.82 0.08 0.09
Matches are distributed among these distances:
141 12 0.11
142 14 0.12
143 20 0.18
144 21 0.19
145 8 0.07
146 37 0.33
147 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (141 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAAATGCCAGTGTAAGACATGTC
TGGGACATGCATCGACTACGAGATGTGCCAGTATAAGACCATGTCTAGGACATGGCATCGGCACG
GATATATGAGA
Found at i:72299862 original size:12 final size:12
Alignment explanation
Indices: 72299845--72299869 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72299835 GCTTGGAAAA
72299845 TAGTCTAAGTGT
1 TAGTCTAAGTGT
72299857 TAGTCTAAGTGT
1 TAGTCTAAGTGT
72299869 T
1 T
72299870 GGCCACACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (12 bp):
TAGTCTAAGTGT
Found at i:72302032 original size:18 final size:18
Alignment explanation
Indices: 72301999--72302074 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
72301989 AGTTTCATTT
*
72301999 AGTAACATTCAATTATTC
1 AGTAACAATCAATTATTC
* * * *
72302017 AGTAGCAATTAGTTATTT
1 AGTAACAATCAATTATTC
72302035 AGTAACAATCAATTATTC
1 AGTAACAATCAATTATTC
* * *
72302053 AGTAACAGTCAGTCATTC
1 AGTAACAATCAATTATTC
72302071 AGTA
1 AGTA
72302075 CTTTTATTTA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (18 bp):
AGTAACAATCAATTATTC
Found at i:72303587 original size:13 final size:15
Alignment explanation
Indices: 72303561--72303593 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
72303551 CATTTACTTT
72303561 ATATATATTATAATA
1 ATATATATTATAATA
72303576 ATATA-ATT-TAATA
1 ATATATATTATAATA
72303589 ATATA
1 ATATA
72303594 CTTATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 3 0.17
15 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATATTATAATA
Found at i:72304122 original size:52 final size:52
Alignment explanation
Indices: 72304044--72304147 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
72304034 AGAAACTGAG
*
72304044 ACCCGAAAATACACTTTTTCGATAACCATAAAATTTGGGTCGTTACATTTCT
1 ACCCGAAAATACACTTTTTCGATAACCATAAAATTCGGGTCGTTACATTTCT
72304096 ACCCGAAAATACACTTTTTCGATAACCATAAAATTCGGGTCGTTACATTTCT
1 ACCCGAAAATACACTTTTTCGATAACCATAAAATTCGGGTCGTTACATTTCT
72304148 TCCCTAATTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.34
Consensus pattern (52 bp):
ACCCGAAAATACACTTTTTCGATAACCATAAAATTCGGGTCGTTACATTTCT
Found at i:72307681 original size:50 final size:50
Alignment explanation
Indices: 72307622--72307721 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
72307612 ATATGGACCC
72307622 TAATAATTGTTTTGCTTTATATTTGAATGAAAATAAAAAACAACAACTAA
1 TAATAATTGTTTTGCTTTATATTTGAATGAAAATAAAAAACAACAACTAA
*
72307672 TAATAATTGTTTTGCTTTATATTTGAATGAAAATCAAAAACAACAACTAA
1 TAATAATTGTTTTGCTTTATATTTGAATGAAAATAAAAAACAACAACTAA
72307722 CCCTGCAATT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (50 bp):
TAATAATTGTTTTGCTTTATATTTGAATGAAAATAAAAAACAACAACTAA
Found at i:72308433 original size:39 final size:39
Alignment explanation
Indices: 72308379--72308478 Score: 164
Period size: 39 Copynumber: 2.6 Consensus size: 39
72308369 TCGTGATCTG
* * *
72308379 AAGCCCGAAGTCTAACTAAAGCACATAAGTGCTAAACGA
1 AAGCCCGAAGGCTAACTGAAGCACATAAGTGATAAACGA
*
72308418 AAGCCCGAAGGCTAACTGAAGCACATAAGTGATAAACGG
1 AAGCCCGAAGGCTAACTGAAGCACATAAGTGATAAACGA
72308457 AAGCCCGAAGGCTAACTGAAGC
1 AAGCCCGAAGGCTAACTGAAGC
72308479 TCACCAGAGC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.13
Consensus pattern (39 bp):
AAGCCCGAAGGCTAACTGAAGCACATAAGTGATAAACGA
Found at i:72313577 original size:49 final size:50
Alignment explanation
Indices: 72313510--72313755 Score: 289
Period size: 49 Copynumber: 4.9 Consensus size: 50
72313500 ATCTATTATG
* * *
72313510 AGGTCACATGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
72313560 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
72313610 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
72313660 AGGTCACGTGTGTAGTACTAAGTTCAGGCTACTACGTGTACTAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
72313710 -GGTCGCATGTGTAGTACTAAGTGCAGGTTGCTATGTGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
72313756 GCTTTGGCTA
Statistics
Matches: 165, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
49 80 0.48
50 47 0.28
51 38 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:72313647 original size:28 final size:27
Alignment explanation
Indices: 72313615--72313698 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
72313605 AACTTCGATC
72313615 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGT-CAGGCTACT
* * *
72313643 ACGTGTATCAG-A-T-GGTTAGG-T-C-
1 ACGTGTGT-AGTACTAAGTCAGGCTACT
72313665 ACGTGTGTAGTACTAAGTTCAGGCTACT
1 ACGTGTGTAGTACTAAG-TCAGGCTACT
72313693 ACGTGT
1 ACGTGT
72313699 ACTAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 2 0.05
25 7 0.17
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTCAGGCTACT
Found at i:72320029 original size:15 final size:16
Alignment explanation
Indices: 72320009--72320038 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72319999 ACAAATAGTA
72320009 AAATA-TTAAAAAAAT
1 AAATATTTAAAAAAAT
72320024 AAATATTTAAAAAAA
1 AAATATTTAAAAAAA
72320039 CACATGACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATATTTAAAAAAAT
Found at i:72322438 original size:31 final size:31
Alignment explanation
Indices: 72322403--72322467 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
72322393 AACCATTTAA
* *
72322403 TGACCAAAATAGAAACGATTTAAAACATGAG
1 TGACCAAAATAAAAACGATCTAAAACATGAG
* * *
72322434 TGACCAAAATAAAAATGATCTAAAATATTAG
1 TGACCAAAATAAAAACGATCTAAAACATGAG
72322465 TGA
1 TGA
72322468 TTAAATTAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (31 bp):
TGACCAAAATAAAAACGATCTAAAACATGAG
Done.