Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 253 of 427
Found at i:72323219 original size:12 final size:12
Alignment explanation
Indices: 72323202--72323235 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
72323192 CGGCCCGCCC
72323202 ATATTAATTTTT
1 ATATTAATTTTT
*
72323214 ATATTATTTTTT
1 ATATTAATTTTT
72323226 ATA-TAATTTT
1 ATATTAATTTT
72323236 AAAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:72323260 original size:18 final size:18
Alignment explanation
Indices: 72323237--72323276 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
72323227 TATAATTTTA
*
72323237 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
72323255 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
72323273 AAAA
1 AAAA
72323277 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:72323394 original size:30 final size:30
Alignment explanation
Indices: 72323358--72323420 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
72323348 ACTTAAATAG
72323358 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
72323388 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
72323418 CAA
1 CAA
72323421 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:72323468 original size:14 final size:14
Alignment explanation
Indices: 72323449--72323481 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
72323439 ATATCTAAAC
72323449 AATAACAACAAAAT
1 AATAACAACAAAAT
*
72323463 AATAACAACATAAT
1 AATAACAACAAAAT
72323477 AATAA
1 AATAA
72323482 AATGGGAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.18
Consensus pattern (14 bp):
AATAACAACAAAAT
Found at i:72323494 original size:11 final size:11
Alignment explanation
Indices: 72323480--72323504 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72323470 ACATAATAAT
72323480 AAAATGGGAGC
1 AAAATGGGAGC
72323491 AAAATGGGAGC
1 AAAATGGGAGC
72323502 AAA
1 AAA
72323505 CAACAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.32, T:0.08
Consensus pattern (11 bp):
AAAATGGGAGC
Found at i:72325243 original size:21 final size:22
Alignment explanation
Indices: 72325203--72325244 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
72325193 TTCTTAAATG
*
72325203 CAAGGCACACAAGCCTGTGTGGT
1 CAAGGCACAC-AGCCCGTGTGGT
72325226 CAAGGCACAC-GCCCGTGTG
1 CAAGGCACACAGCCCGTGTG
72325245 ACCATAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
23 10 0.56
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.14
Consensus pattern (22 bp):
CAAGGCACACAGCCCGTGTGGT
Found at i:72328782 original size:21 final size:23
Alignment explanation
Indices: 72328738--72328782 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
72328728 CAATATTCCG
*
72328738 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATAATCT
72328761 GGTGTGTTTGGG-TGGA-AATCT
1 GGTGTGTTTGGGTTGGATAATCT
72328782 G
1 G
72328783 CGTATCTGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 4 0.19
23 12 0.57
ACGTcount: A:0.11, C:0.04, G:0.42, T:0.42
Consensus pattern (23 bp):
GGTGTGTTTGGGTTGGATAATCT
Found at i:72331628 original size:2 final size:2
Alignment explanation
Indices: 72331586--72331614 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
72331576 GAAACTCTAC
72331586 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72331615 GCATACCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:72332178 original size:33 final size:32
Alignment explanation
Indices: 72332092--72332219 Score: 87
Period size: 33 Copynumber: 3.9 Consensus size: 32
72332082 CGTTTTATTG
* *
72332092 ATGCCATAGTCCAA-CTATGGTCTTACACATATA
1 ATGCCATA-ACCAAGCTATGGTCTTACAC-TAGA
* ** ** * *
72332125 TTGCCATGGCCCTGCCATGGTCTTACACTCGTA
1 ATGCCATAACCAAGCTATGGTCTTACACTAG-A
* * *
72332158 ATGCCATAACCAAGTTATGGTCTTATCATTAGG
1 ATGCCATAACCAAGCTATGGTCTTA-CACTAGA
* *
72332191 ATGCCATAGCCCAGCTATGGTCTTACACT
1 ATGCCATAACCAAGCTATGGTCTTACACT
72332220 TATACATATA
Statistics
Matches: 70, Mismatches: 22, Indels: 7
0.71 0.22 0.07
Matches are distributed among these distances:
32 6 0.09
33 60 0.86
34 4 0.06
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (32 bp):
ATGCCATAACCAAGCTATGGTCTTACACTAGA
Found at i:72332268 original size:105 final size:101
Alignment explanation
Indices: 72332159--72332351 Score: 260
Period size: 105 Copynumber: 1.9 Consensus size: 101
72332149 ACACTCGTAA
* ** *
72332159 TGCCATAACCAAGTTATGGTCTTATCATTAGGATGCCATAGCCCAGCTATGGTCTTACACTTATA
1 TGCCATAACCAAGTTATGGTCTTATCACTAAAATGCCATAGCCCAGCTATAGTCTTACA-TT-TA
72332224 CATATACTGCCATGATCCAACCATGGTCTTACGTTCACGG
64 -A-ATACTGCCATGATCCAACCATGGTCTTACGTTCACGG
* * *
72332264 TGCCATAACCCAGTTATGGTCTTTTCACTAAAATGCCATAGCCTAGCTATAGTCTTACATTTAAA
1 TGCCATAACCAAGTTATGGTCTTATCACTAAAATGCCATAGCCCAGCTATAGTCTTACATTTAAA
* * *
72332329 TATTTCCATGGTCCAACCATGGT
66 TACTGCCATGATCCAACCATGGT
72332352 ATTATCCGTT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
101 21 0.27
102 1 0.01
103 2 0.03
104 2 0.03
105 52 0.67
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
TGCCATAACCAAGTTATGGTCTTATCACTAAAATGCCATAGCCCAGCTATAGTCTTACATTTAAA
TACTGCCATGATCCAACCATGGTCTTACGTTCACGG
Found at i:72337276 original size:40 final size:41
Alignment explanation
Indices: 72337221--72337300 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 41
72337211 CTCAAATCAT
72337221 TGTTTCCGACACCACTGAAAATTGGG-CGTTACAATTCCAC
1 TGTTTCCGACACCACTGAAAATTGGGTCGTTACAATTCCAC
* * *
72337261 TGTTTTCGACACCACTGAAAATTGGGTTGTTATAATTCCA
1 TGTTTCCGACACCACTGAAAATTGGGTCGTTACAATTCCA
72337301 TCTCTATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 25 0.69
41 11 0.31
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (41 bp):
TGTTTCCGACACCACTGAAAATTGGGTCGTTACAATTCCAC
Found at i:72340792 original size:57 final size:57
Alignment explanation
Indices: 72340726--72340837 Score: 179
Period size: 57 Copynumber: 2.0 Consensus size: 57
72340716 TTGTTATGTT
*
72340726 TGTTGGGACGTTAGTTGCAAGTATGATTTCCAACTCTATGAGTATTTGAAAATCTTC
1 TGTTGGGACGTTAGTTCCAAGTATGATTTCCAACTCTATGAGTATTTGAAAATCTTC
* ** *
72340783 TGTTGGGACGTTAGTTCCAAGTATGCTTTCTGACTCTGTGAGTATTTGAAAATCT
1 TGTTGGGACGTTAGTTCCAAGTATGATTTCCAACTCTATGAGTATTTGAAAATCT
72340838 GTTGCGCTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (57 bp):
TGTTGGGACGTTAGTTCCAAGTATGATTTCCAACTCTATGAGTATTTGAAAATCTTC
Found at i:72347682 original size:27 final size:27
Alignment explanation
Indices: 72347651--72348141 Score: 408
Period size: 27 Copynumber: 18.3 Consensus size: 27
72347641 AGACCCTGGT
*
72347651 TTGTAAAATTACCAAAATACCCTCGGA
1 TTGTAAAATTACCAAAATACCCTCAGA
* *
72347678 TTGTAAAATTATCGAAATACCC-C-GA
1 TTGTAAAATTACCAAAATACCCTCAGA
* *
72347703 TTTGTAAAA-T--CGAAATACCCTCTGA
1 -TTGTAAAATTACCAAAATACCCTCAGA
*
72347728 TTGTAAAATTACCAAAATACCCTCGGA
1 TTGTAAAATTACCAAAATACCCTCAGA
***
72347755 TTGTAAAATTATTGAAATACCCAT-A-A
1 TTGTAAAATTACCAAAATACCC-TCAGA
* *
72347781 TTTGTAAAATTATCAAAATACCC-CTAGT
1 -TTGTAAAATTACCAAAATACCCTC-AGA
* * ** *
72347809 TTGTAAAATTACTAAAATACTCTTGGT
1 TTGTAAAATTACCAAAATACCCTCAGA
**** *
72347836 TTGTAAAATTATTGGAATACCCTCAAA
1 TTGTAAAATTACCAAAATACCCTCAGA
**
72347863 TTGTAAAATTACTGAAATACCCTCA-A
1 TTGTAAAATTACCAAAATACCCTCAGA
* * *
72347889 TTTATAAAATTACGAAAATACCCTCAGT
1 -TTGTAAAATTACCAAAATACCCTCAGA
* *
72347917 TTGTAAAATTACCAAAATACCTTCTGA
1 TTGTAAAATTACCAAAATACCCTCAGA
*** **
72347944 TTGTAAAATTATTGAAATACCCTTTGA
1 TTGTAAAATTACCAAAATACCCTCAGA
* * *
72347971 TTGTAAAATTACCGAAATACCCCCAGT
1 TTGTAAAATTACCAAAATACCCTCAGA
* *
72347998 TTGTAAAATTACCAAAAGACTCC-CAGT
1 TTGTAAAATTACCAAAATAC-CCTCAGA
*** * *
72348025 TTGTAAAATTATTGAAATACCTTCGGA
1 TTGTAAAATTACCAAAATACCCTCAGA
* * *
72348052 TTGTAAAATTACTAAAATACCCCCAGT
1 TTGTAAAATTACCAAAATACCCTCAGA
* *
72348079 TTGTAAAATTACCGAAATAGCCTCAGA
1 TTGTAAAATTACCAAAATACCCTCAGA
* *
72348106 TTGTAAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCTCAGA
72348133 TTGTAAAAT
1 TTGTAAAAT
72348142 GACTATTTTG
Statistics
Matches: 378, Mismatches: 70, Indels: 32
0.79 0.15 0.07
Matches are distributed among these distances:
23 10 0.03
24 9 0.02
25 6 0.02
26 12 0.03
27 338 0.89
28 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCAGA
Found at i:72358153 original size:18 final size:18
Alignment explanation
Indices: 72358109--72358153 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
72358099 AATTTTTATA
*
72358109 TTTTATGTTCTTTTAATT
1 TTTTATTTTCTTTTAATT
72358127 TTCTT-TTTTCTTTTAATT
1 TT-TTATTTTCTTTTAATT
72358145 TTTTATTTT
1 TTTTATTTT
72358154 TTATTTTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 2 0.08
18 20 0.83
19 2 0.08
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (18 bp):
TTTTATTTTCTTTTAATT
Found at i:72360155 original size:38 final size:39
Alignment explanation
Indices: 72360099--72360177 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 39
72360089 CAATCAAGCT
* * *
72360099 AAAACTCAATTAACATATAATAAATGTTCTATTATATTA
1 AAAACACAAATAACATATAATAAATATTCTATTATATTA
* *
72360138 AAAACACAAATAA-ATATAATAAATATTTTATTGTATTA
1 AAAACACAAATAACATATAATAAATATTCTATTATATTA
72360176 AA
1 AA
72360178 TATAATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
38 24 0.69
39 11 0.31
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.37
Consensus pattern (39 bp):
AAAACACAAATAACATATAATAAATATTCTATTATATTA
Found at i:72363429 original size:24 final size:24
Alignment explanation
Indices: 72363397--72363483 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
72363387 AATCTCAAAT
72363397 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72363421 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
72363445 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72363469 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
72363484 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:72363449 original size:48 final size:48
Alignment explanation
Indices: 72363397--72363505 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
72363387 AATCTCAAAT
** *
72363397 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
72363445 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
72363493 GCACTATGTGTGC
1 GCACTATGTGTGC
72363506 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:72363496 original size:24 final size:24
Alignment explanation
Indices: 72363397--72363505 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
72363387 AATCTCAAAT
*
72363397 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
72363421 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
72363445 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
72363469 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
72363493 GCACTATGTGTGC
1 GCACTATGTGTGC
72363506 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:72363943 original size:25 final size:25
Alignment explanation
Indices: 72363909--72363958 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
72363899 CAAAGTCATC
72363909 ACACCGGCTAGCAACTTTTGGTACT
1 ACACCGGCTAGCAACTTTTGGTACT
72363934 ACACCGGCTAGCAACTTTTGGTACT
1 ACACCGGCTAGCAACTTTTGGTACT
72363959 TTCTTCTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (25 bp):
ACACCGGCTAGCAACTTTTGGTACT
Found at i:72365668 original size:30 final size:30
Alignment explanation
Indices: 72365632--72365689 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
72365622 CAAGTAGCCG
*
72365632 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACCTAGTGCCA
72365662 AAGCTAGTTTAAATCGCACACCTAGTGC
1 AAGCTAGTTTAAATCGCACACCTAGTGC
72365690 GGAACTTTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACCTAGTGCCA
Found at i:72366690 original size:13 final size:13
Alignment explanation
Indices: 72366672--72366707 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
72366662 AAACAGTTAA
*
72366672 ATTTTCACACTAG
1 ATTTTCACACGAG
72366685 ATTTTCACACGAG
1 ATTTTCACACGAG
72366698 ATTTTCACAC
1 ATTTTCACAC
72366708 ATGTCAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (13 bp):
ATTTTCACACGAG
Found at i:72367203 original size:20 final size:20
Alignment explanation
Indices: 72367180--72367223 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
72367170 TAATTTAGCC
* *
72367180 ATTTTTATTTTTATTTTAAT
1 ATTTTTATTTTCAATTTAAT
*
72367200 ATTTTTGTTTTCAATTTAAT
1 ATTTTTATTTTCAATTTAAT
72367220 -TTTT
1 ATTTT
72367224 ACATTGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (20 bp):
ATTTTTATTTTCAATTTAAT
Found at i:72371225 original size:30 final size:30
Alignment explanation
Indices: 72371177--72371234 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
72371167 CAATTTGGGG
*
72371177 TCACACGGCCAAGTCACACACCCGTGTCCT
1 TCACACGGCCAAGACACACACCCGTGTCCT
** **
72371207 TCACACGGCTGAGACACACGGCCGTGTC
1 TCACACGGCCAAGACACACACCCGTGTC
72371235 TCTGTTCGTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.22, C:0.40, G:0.22, T:0.16
Consensus pattern (30 bp):
TCACACGGCCAAGACACACACCCGTGTCCT
Found at i:72373404 original size:42 final size:42
Alignment explanation
Indices: 72373280--72373442 Score: 157
Period size: 42 Copynumber: 3.9 Consensus size: 42
72373270 TAAGATGCCA
* * ** *
72373280 ATGCCATATCCCAGATATGGTCTTACATGGGATCATATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
** ** *
72373322 ATGCCGATAGGCCAG-CTATGGTCTTACACGATGTCTCATATCG
1 ATGCC-ATATCCCAGAC-ATGGTCTTACACGAAATCACATATCG
* * * *
72373365 ATGCCATGTCCCAGACATGGTCTTACATGAAATCGCATATTG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
* *
72373407 ATGTCATATCCCAGATATGGTCTTACACGAAATCAC
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCAC
72373443 TTATAACCTT
Statistics
Matches: 96, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
42 63 0.66
43 33 0.34
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:72375851 original size:89 final size:89
Alignment explanation
Indices: 72375699--72375878 Score: 261
Period size: 89 Copynumber: 2.0 Consensus size: 89
72375689 ACGAACTTAC
* * *
72375699 CTCGATAACTAGAGTTGTAGTGGTAGATTCAAACTAAAACAAAACTTTAGCCTTTCCTCGATTTA
1 CTCGATAACTAGAGTCGTAGTAGTAGAGTCAAACTAAAACAAAACTTTAGCCTTTCCTCGATTTA
* *
72375764 AGTTTGATTGTGGTTTATCTTGAT
66 AGTCTGATTGTGGTTTATCTTAAT
* ** * * *
72375788 CTCGATAACTAGGGTCGTAGTAGTAGAGTCAAACTAATCCAAAGCTTTAGCTTTTCCTTGATTTA
1 CTCGATAACTAGAGTCGTAGTAGTAGAGTCAAACTAAAACAAAACTTTAGCCTTTCCTCGATTTA
72375853 AGTCTGATTGTGGTTTATCTTAAT
66 AGTCTGATTGTGGTTTATCTTAAT
72375877 CT
1 CT
72375879 AAATAAATAA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 80 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (89 bp):
CTCGATAACTAGAGTCGTAGTAGTAGAGTCAAACTAAAACAAAACTTTAGCCTTTCCTCGATTTA
AGTCTGATTGTGGTTTATCTTAAT
Found at i:72379362 original size:44 final size:46
Alignment explanation
Indices: 72379295--72379409 Score: 130
Period size: 46 Copynumber: 2.5 Consensus size: 46
72379285 TATCCGTGTA
* *
72379295 GATGCCATGT-CCAGGCATGGTCTTACACT-GA-CACATCTCGTA-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGATCACATCTCG-AGGCC
*
72379340 GATGCATGTCCCAGACATGTCTTACACTGGATTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGATCACATCTCGAGGCC
* *
72379386 AATGCATGTCCCACACATGTCTTA
1 GATGCATGTCCCAGACATGTCTTA
72379410 TTCAGGAACA
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
44 15 0.25
45 14 0.23
46 32 0.52
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGATCACATCTCGAGGCC
Found at i:72384538 original size:31 final size:31
Alignment explanation
Indices: 72384503--72384566 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
72384493 CCTTTGCATG
*
72384503 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTAGGCCGAAGCCT
* **
72384534 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTCCATAACACTAGGCCGAAGCCT
72384565 TT
1 TT
72384567 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTAGGCCGAAGCCT
Found at i:72384853 original size:23 final size:23
Alignment explanation
Indices: 72384823--72384988 Score: 269
Period size: 23 Copynumber: 7.1 Consensus size: 23
72384813 CCTTGCCTCT
*
72384823 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
72384846 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
72384869 TTTTGATCACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
72384893 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
72384916 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
72384940 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72384963 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
72384986 TTT
1 TTT
72384989 TGTACTTCCT
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 90 0.68
24 42 0.32
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:72384881 original size:47 final size:47
Alignment explanation
Indices: 72384821--72384988 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
72384811 GGCCTTGCCT
* *
72384821 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
* *
72384868 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
72384915 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
72384962 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTT
72384989 TGTACTTCCT
Statistics
Matches: 115, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 25 0.22
47 90 0.78
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:72384989 original size:70 final size:71
Alignment explanation
Indices: 72384823--72384990 Score: 277
Period size: 70 Copynumber: 2.4 Consensus size: 71
72384813 CCTTGCCTCT
* * * * *
72384823 TTTAATAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTGATCACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
72384887 AAGCCC
66 AAGCCC
72384893 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
72384957 AAGCCC
66 AAGCCC
72384963 TTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTG
72384991 TACTTCCTCC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
70 71 0.77
71 21 0.23
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (71 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAT
AAGCCC
Found at i:72385064 original size:20 final size:20
Alignment explanation
Indices: 72385039--72385099 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
72385029 TTATGATTAC
72385039 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
72385059 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
72385079 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
72385099 A
1 A
72385100 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:72385174 original size:25 final size:25
Alignment explanation
Indices: 72385142--72385189 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72385132 ATACATAAAC
* * *
72385142 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
72385167 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
72385190 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:72386382 original size:27 final size:27
Alignment explanation
Indices: 72386352--72386416 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
72386342 GGGCATATTC
*
72386352 GTCATTTTACCATACAGGGG-TATCACG
1 GTCACTTTACCATACAGGGGCT-TCACG
* *
72386379 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTCACG
72386406 GTCACTTTACC
1 GTCACTTTACC
72386417 TAATAGGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTCACG
Found at i:72386490 original size:27 final size:27
Alignment explanation
Indices: 72386467--72386685 Score: 181
Period size: 27 Copynumber: 8.0 Consensus size: 27
72386457 TTGGTAAATC
72386467 TACAAACTAAGGGTATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
** * *
72386494 TGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAACTAAGGGTATTTC-AGTAA-TTT
* * * *
72386522 TAGAAAGTCAAGGGTATTTCTGTAACTT
1 TACAAACT-AAGGGTATTTCAGTAATTT
** * **
72386550 TGTAAA-TCAGAGGTATTTTGGTAATTT
1 TACAAACTAAG-GGTATTTCAGTAATTT
* *
72386577 TACAAATTGAGGGTATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
* * **
72386604 CACAAACCAAGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
* **
72386631 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
*
72386658 TACAAACTAAGGGTATTTTAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
72386685 T
1 T
72386686 GTAAATCGAG
Statistics
Matches: 153, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.01
27 121 0.79
28 17 0.11
29 13 0.08
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
TACAAACTAAGGGTATTTCAGTAATTT
Found at i:72386619 original size:54 final size:54
Alignment explanation
Indices: 72386447--72386685 Score: 221
Period size: 54 Copynumber: 4.4 Consensus size: 54
72386437 TTTCATCCTA
* * * * **
72386447 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAAC
* * * * * * ** *
72386501 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-TTAAGGGTATTTCAGTAATTTTACAAAC
* *
72386557 C-AGAGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAAC
* * **
72386611 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAAC
* *
72386665 TAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
72386686 GTAAATCGAG
Statistics
Matches: 149, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
54 96 0.64
55 19 0.13
56 34 0.23
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTTACAAAC
Found at i:72386697 original size:27 final size:27
Alignment explanation
Indices: 72386447--72386699 Score: 167
Period size: 27 Copynumber: 9.3 Consensus size: 27
72386437 TTTCATCCTA
* * * *
72386447 CAAGGGTGTTTTGGTAAATCTACAAA-
1 CAAGGGTATTTTAGTAATTTTACAAAT
* ** *
72386473 CTAAGGGTATTTCAGTAATTTTGTAAAC
1 C-AAGGGTATTTTAGTAATTTTACAAAT
* *
72386501 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-T
* **
72386530 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAT
*
72386557 C-AGAGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTAGTAATTTTACAAAT
** * * *
72386584 TGAGGGTATTTCAGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAT
*
72386611 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTAGTAATTTTACAAAT
* *
72386637 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTAGTAATTTTACAAAT
**
72386664 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTACAAAT
*
72386692 CGAGGGTA
1 CAAGGGTA
72386700 AAACAGTAAT
Statistics
Matches: 181, Mismatches: 35, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
26 5 0.03
27 143 0.79
28 18 0.10
29 15 0.08
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAT
Found at i:72386698 original size:81 final size:80
Alignment explanation
Indices: 72386447--72386699 Score: 226
Period size: 81 Copynumber: 3.1 Consensus size: 80
72386437 TTTCATCCTA
* * * * ** ** * *
72386447 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
72386512 CTA-TAATTTTTAGAAAGT
66 -TAGTAATTTTT--AAA-T
* * * *
72386530 CAAGGGTATTTCT-GTAACTTTGTA-AATC-AGAGGTATTTTGGTAATTTTACAAATTGAGGGTA
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTA
* ** *
72386592 TTTCAGTAATTTCACAAAC
63 TTTTAGTAATTT-TTAAAT
72386611 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
72386676 TAGTAATTTTGTAAAT
66 TAGTAATTTT-TAAAT
*
72386692 CGAGGGTA
1 CAAGGGTA
72386700 AAACAGTAAT
Statistics
Matches: 134, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
79 2 0.01
80 7 0.05
81 67 0.50
82 4 0.03
83 47 0.35
84 5 0.04
85 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
TAGTAATTTTTAAAT
Found at i:72386707 original size:27 final size:27
Alignment explanation
Indices: 72386678--72387047 Score: 385
Period size: 27 Copynumber: 13.7 Consensus size: 27
72386668 GGGTATTTTA
* *
72386678 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCGAGGGTAAAACG
* *
72386705 GTAATTCTGTAAATC-AAGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAACG
*
72386731 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
* *
72386758 ATAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
* *
72386785 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAACG
*
72386812 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
*
72386839 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
* *
72386866 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAACG
*
72386893 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTATGTAAATCGA-GGGTAAAACG
* * *
72386920 GTAATTATATAAATCGAGGATAAAATG
1 GTAATTATGTAAATCGAGGGTAAAACG
* * **
72386947 GTAATTCTGTAAATCGGGGGTAAAATA
1 GTAATTATGTAAATCGAGGGTAAAACG
* *
72386974 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTATGTAAATC-GAGGGTAAAACG
* *
72387001 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAACG
* **
72387028 GTAATTTTACAAATCGAGGG
1 GTAATTATGTAAATCGAGGG
72387048 CATTTCAGTA
Statistics
Matches: 296, Mismatches: 37, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
26 26 0.09
27 266 0.90
28 4 0.01
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTATGTAAATCGAGGGTAAAACG
Found at i:72386835 original size:81 final size:81
Alignment explanation
Indices: 72386678--72387047 Score: 471
Period size: 81 Copynumber: 4.6 Consensus size: 81
72386668 GGGTATTTTA
* * * * *
72386678 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AAGGTAAAACGATAATTATGTA
1 GTAATTATATAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
72386742 AATCAGGGGTAAAACG
66 AATCAGGGGTAAAACG
* * *
72386758 ATAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGT
1 GTAATTATATAAA-TAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGT
72386822 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
* *
72386839 GTAATTATGTAAATTAG-GGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAACGATAATTATGT
1 GTAATTATATAAA-TAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGT
72386903 AAATCAGGGGTAAAACG
65 AAATCAGGGGTAAAACG
* * * * * *
72386920 GTAATTATATAAATCGAGGATAAAATGGTAATTCTGTAAATCGGGGGTAAAA-TAGTAATTCTGT
1 GTAATTATATAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTATGT
*
72386984 AAA-CTAAGGGTAAAACG
65 AAATC-AGGGGTAAAACG
* * * **
72387001 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGG
1 GTAATTATATAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
72387048 CATTTCAGTA
Statistics
Matches: 262, Mismatches: 23, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
80 38 0.15
81 224 0.85
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTATATAAATAGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
AATCAGGGGTAAAACG
Found at i:72389401 original size:21 final size:21
Alignment explanation
Indices: 72389377--72389417 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
72389367 TTTAGAAATG
*
72389377 ATTTAGGACTAAATCGAAAAC
1 ATTTAGAACTAAATCGAAAAC
**
72389398 ATTTAGAACTTCATCGAAAA
1 ATTTAGAACTAAATCGAAAA
72389418 AGATAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (21 bp):
ATTTAGAACTAAATCGAAAAC
Found at i:72389843 original size:33 final size:33
Alignment explanation
Indices: 72389801--72389871 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
72389791 TTATTATTTT
72389801 AATTTTTATATCATGATAATACGATTGTGTGAA
1 AATTTTTATATCATGATAATACGATTGTGTGAA
72389834 AATTTTTATATCATGATAATACGATTGTGTGAA
1 AATTTTTATATCATGATAATACGATTGTGTGAA
72389867 AATTT
1 AATTT
72389872 CGTTAAGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.44
Consensus pattern (33 bp):
AATTTTTATATCATGATAATACGATTGTGTGAA
Found at i:72394265 original size:46 final size:46
Alignment explanation
Indices: 72394193--72394321 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
72394183 TGTAACCCGC
* * * *
72394193 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72394239 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72394285 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72394322 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72396891 original size:44 final size:44
Alignment explanation
Indices: 72396828--72396917 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
72396818 AAAGTAAGCT
72396828 TATATAGCTTAGTAAGTAAGTATATAAATAATAATTAAAGAATC
1 TATATAGCTTAGTAAGTAAGTATATAAATAATAATTAAAGAATC
72396872 TATATAGCTTAGTAAGTAAGTATATAAATAATAATTAAAGAATC
1 TATATAGCTTAGTAAGTAAGTATATAAATAATAATTAAAGAATC
72396916 TA
1 TA
72396918 ATATGTTTAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.34
Consensus pattern (44 bp):
TATATAGCTTAGTAAGTAAGTATATAAATAATAATTAAAGAATC
Found at i:72412358 original size:41 final size:41
Alignment explanation
Indices: 72412313--72412430 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72412303 TGAAAGATAA
72412313 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72412354 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72412384 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72412425 ATGTAG
1 ATGTAG
72412431 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72412368 original size:71 final size:71
Alignment explanation
Indices: 72412281--72412444 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72412271 GAGATGTATC
72412281 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72412346 AGGACA
66 AGGACA
72412352 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72412417 AGGACA
66 AGGACA
72412423 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72412445 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72415400 original size:39 final size:39
Alignment explanation
Indices: 72415283--72415557 Score: 412
Period size: 39 Copynumber: 7.1 Consensus size: 39
72415273 CGAAATTTTA
*
72415283 TTCCAGCACAAAGCCTGCGGGACTTTAG-CCGGATACAT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
*
72415321 TTCCAGCACAAAGCCTGC-GGTCTTTAGCCCAGATACAT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
* * *
72415359 TTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATAT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
*
72415398 TTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACAT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
72415437 TTCCAGCACAAAGCCTGCGGGTCTTTAG-CCGGATACAT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
* * * * * *
72415475 TTCCAGCACGAAGCCTGCAGGTATTTGGCCTGGATATAT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
*
72415514 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATAT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
72415553 TTCCA
1 TTCCA
72415558 TACACATTTC
Statistics
Matches: 212, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
37 8 0.04
38 78 0.37
39 126 0.59
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
Found at i:72415409 original size:77 final size:77
Alignment explanation
Indices: 72415283--72415557 Score: 408
Period size: 77 Copynumber: 3.6 Consensus size: 77
72415273 CGAAATTTTA
*
72415283 TTCCAGCACAAAGCCTGCGGGACTTTAGCCGGATACATTTCCAGCACAAAGCCTGC-GGTCTTTA
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCGGATACATTTCCAGCACAAAGCCTGCAGGTCTTTA
*
72415347 GCCCAGATACAT
66 GCCCGGATACAT
* * * * *
72415359 TTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTTCCAGCACAAAGCCTGCGGGACTTT
1 TTCCAGCACAAAGCCTGCGGGTCTTTAG-CCGGATACATTTCCAGCACAAAGCCTGCAGGTCTTT
72415424 AGCCCGGATACAT
65 AGCCCGGATACAT
* * *
72415437 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCGGATACATTTCCAGCACGAAGCCTGCAGGTATTTG
1 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCGGATACATTTCCAGCACAAAGCCTGCAGGTCTTTA
* *
72415502 GCCTGGATATAT
66 GCCCGGATACAT
*
72415514 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
1 TTCCAGCACAAAGCCTGCGGGTCTTTAG-CCGGATACATTTCCA
72415558 TACACATTTC
Statistics
Matches: 179, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
76 25 0.14
77 96 0.54
78 58 0.32
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (77 bp):
TTCCAGCACAAAGCCTGCGGGTCTTTAGCCGGATACATTTCCAGCACAAAGCCTGCAGGTCTTTA
GCCCGGATACAT
Found at i:72415486 original size:116 final size:116
Alignment explanation
Indices: 72415283--72415557 Score: 473
Period size: 116 Copynumber: 2.4 Consensus size: 116
72415273 CGAAATTTTA
72415283 TTCCAGCACAAAGCCTGCGGGACTTTAG-CCGGATACATTTCCAGCACAAAGCCTGCGGTCTTTA
1 TTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGTCTTTA
* *
72415347 GCCCAGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATAT
66 GCCCAGATACATTTCCAGCACGAAGCCTGCAGGTATTTGGCCCGGATATAT
72415398 TTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTT
1 TTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGC-GGTCTTT
* *
72415463 AG-CCGGATACATTTCCAGCACGAAGCCTGCAGGTATTTGGCCTGGATATAT
65 AGCCCAGATACATTTCCAGCACGAAGCCTGCAGGTATTTGGCCCGGATATAT
* *
72415514 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
1 TTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
72415558 TACACATTTC
Statistics
Matches: 152, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
115 28 0.18
116 115 0.76
117 9 0.06
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (116 bp):
TTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGTCTTTA
GCCCAGATACATTTCCAGCACGAAGCCTGCAGGTATTTGGCCCGGATATAT
Found at i:72421502 original size:47 final size:47
Alignment explanation
Indices: 72421438--72421596 Score: 200
Period size: 47 Copynumber: 3.4 Consensus size: 47
72421428 ATCGACAAGT
72421438 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
* * * * ***
72421485 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGC-A-TT-CATAAGT-
1 GAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTTACATCTCTC
72421531 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
72421578 GAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAA
72421597 CGACTTCGGA
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 29 0.32
47 48 0.53
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72421502 original size:93 final size:92
Alignment explanation
Indices: 72421391--72421656 Score: 417
Period size: 93 Copynumber: 2.9 Consensus size: 92
72421381 CGCCCATAAG
* * *
72421391 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCGACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATC-ATAAGTGAACTCGGACTCAACTCA
72421456 ATGAGCTCGGATGCCTAGTTACATCTCT
65 ATGAGCTCGGATGCCTAGTTACATCTCT
* *
72421484 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATTCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCA-TCATAAGTGAACTCGGACTCAACTCA
72421549 ATGAGCTCGGATGCCTAGTTACATCTCT
65 ATGAGCTCGGATGCCTAGTTACATCTCT
*
72421577 CGAACTCGGACTCAACTCAACGA-CTTCGGACATTCGCATCCATAAGTGAGCTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGC-TCGGACATTCGCAT-CATAAGTGAACTCGGACTCAACTC
* *
72421641 AACGAGTTCGGATGCC
64 AATGAGCTCGGATGCC
72421657 CAAATATCCT
Statistics
Matches: 160, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 157 0.98
94 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCATAAGTGAACTCGGACTCAACTCAA
TGAGCTCGGATGCCTAGTTACATCTCT
Found at i:72421652 original size:46 final size:46
Alignment explanation
Indices: 72421384--72421652 Score: 210
Period size: 46 Copynumber: 5.8 Consensus size: 46
72421374 TGTAACCCGC
* * *
72421384 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * *
72421430 CGACAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
72421476 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
72421523 TCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* ***
72421569 ACATCTCTCGAACTCGGACTCAACTCAACGA-CTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGC-TCGGACATTCGCAT
* *
72421616 CCATAAGTGAGCTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72421653 TGCCCAAATA
Statistics
Matches: 171, Mismatches: 36, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
43 2 0.01
44 7 0.04
46 92 0.54
47 60 0.35
49 8 0.05
50 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:72424084 original size:30 final size:30
Alignment explanation
Indices: 72424049--72424128 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
72424039 CAAGAAAATC
*
72424049 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* *
72424079 GAATAAAGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
72424109 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
72424129 TGATGCTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 2 0.05
30 39 0.91
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:72424088 original size:15 final size:15
Alignment explanation
Indices: 72424049--72424119 Score: 90
Period size: 15 Copynumber: 4.7 Consensus size: 15
72424039 CAAGAAAATC
72424049 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
* *
72424064 -AGATAGAGAAACCCA
1 GA-ATAAAGAAATCCA
72424079 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
72424094 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
72424109 GGATAAAGAAA
1 GAATAAAGAAA
72424120 CCCAAGATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
14 1 0.02
15 45 0.96
16 1 0.02
ACGTcount: A:0.58, C:0.13, G:0.18, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:72424128 original size:15 final size:15
Alignment explanation
Indices: 72424051--72424128 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72424041 AGAAAATCGA
72424051 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72424066 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72424080 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72424095 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72424111 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72424126 ATA
1 ATA
72424129 TGATGCTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72426753 original size:93 final size:93
Alignment explanation
Indices: 72426624--72426889 Score: 399
Period size: 93 Copynumber: 2.9 Consensus size: 93
72426614 CACCCATAAG
* * * * * * *
72426624 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTCGGACTTAACTCA
1 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
72426689 ACTAGCTCGGATGCCTAGTTACATCACT
66 ACGAGCTCGGATGCCTAGTTACATCACT
72426717 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
72426782 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCACT
** *
72426810 CGAACTCGGACTCAACTCAA-TGGCTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
72426874 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
72426890 CAAATATCCT
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
92 1 0.01
93 158 0.99
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCACT
Found at i:72426839 original size:47 final size:47
Alignment explanation
Indices: 72426671--72426829 Score: 182
Period size: 47 Copynumber: 3.4 Consensus size: 47
72426661 ATCCACAAGT
*
72426671 GAACTCGGACTTAACTCAACTAGCTCGGATGCCTAGTTACATCACTC
1 GAACTCGGACTCAACTCAACTAGCTCGGATGCCTAGTTACATCACTC
* * * * * *
72426718 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACTAGCTCGG--ATGC-CTAGTTACATCACTC
* *
72426764 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACTAGCTCGGATGCCTAGTTACATCACTC
72426811 GAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAA
72426830 TGGCTTCGGA
Statistics
Matches: 91, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 31 0.34
47 50 0.55
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACTAGCTCGGATGCCTAGTTACATCACTC
Found at i:72426885 original size:46 final size:46
Alignment explanation
Indices: 72426617--72426885 Score: 214
Period size: 46 Copynumber: 5.8 Consensus size: 46
72426607 TGTAACCCAC
* * * * *
72426617 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* * * *
72426663 CCACAAGTGAACTCGGACTTAACTCAACTAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCAC-A--T
* * * * * *
72426709 ACATCACTCGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
72426756 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* *
72426806 CTC-T---CGAACTCGGACTCAACTCAATG-GCTTCGGACATTCACAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGC-TCGGACATTCACAT
*
72426849 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
72426886 TGCCCAAATA
Statistics
Matches: 177, Mismatches: 26, Indels: 40
0.73 0.11 0.16
Matches are distributed among these distances:
42 3 0.02
43 8 0.05
44 4 0.02
46 90 0.51
47 57 0.32
49 5 0.03
50 7 0.04
51 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:72429812 original size:19 final size:18
Alignment explanation
Indices: 72429785--72429823 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
72429775 GACTAGCATT
*
72429785 TAATGTATAAATGATATAA
1 TAATATATAAA-GATATAA
*
72429804 TAATATATAAAGATTTAA
1 TAATATATAAAGATATAA
72429822 TA
1 TA
72429824 CAATAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (18 bp):
TAATATATAAAGATATAA
Found at i:72429863 original size:19 final size:18
Alignment explanation
Indices: 72429841--72429890 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
72429831 TATAATTATA
*
72429841 ATATATAATATAAAAGTAT
1 ATATATAA-ATAAAAATAT
* *
72429860 ATATGTAAGAAAAAAATAT
1 ATATATAA-ATAAAAATAT
72429879 ATATATAAATAA
1 ATATATAAATAA
72429891 TAACAATTTG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 3 0.12
19 22 0.88
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
ATATATAAATAAAAATAT
Found at i:72429919 original size:7 final size:7
Alignment explanation
Indices: 72429907--72429972 Score: 53
Period size: 7 Copynumber: 9.0 Consensus size: 7
72429897 TTTGCGAAAA
72429907 ATAATAT
1 ATAATAT
*
72429914 ATAATAA
1 ATAATAT
*
72429921 AGAATA-
1 ATAATAT
72429927 ATAATAT
1 ATAATAT
72429934 AAATAATAT
1 --ATAATAT
*
72429943 ATAATAAA
1 ATAAT-AT
*
72429951 ATACTTAT
1 ATA-ATAT
72429959 ATAATAT
1 ATAATAT
72429966 ATAATAT
1 ATAATAT
72429973 GAAAATAAGG
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
6 5 0.11
7 26 0.55
8 8 0.17
9 8 0.17
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (7 bp):
ATAATAT
Found at i:72429940 original size:9 final size:10
Alignment explanation
Indices: 72429906--72429971 Score: 64
Period size: 10 Copynumber: 6.4 Consensus size: 10
72429896 ATTTGCGAAA
72429906 AATAATATAT
1 AATAATATAT
*
72429916 AATAA-AGAAT
1 AATAATA-TAT
72429926 AATAATATA-
1 AATAATATAT
72429935 AATAATATAT
1 AATAATATAT
*
72429945 AATAAAATACTT
1 AATAATATA--T
72429957 ATATAATATAT
1 A-ATAATATAT
72429968 AATA
1 AATA
72429972 TGAAAATAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
9 10 0.22
10 24 0.52
11 3 0.07
12 2 0.04
13 7 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (10 bp):
AATAATATAT
Found at i:72429959 original size:14 final size:16
Alignment explanation
Indices: 72429905--72429971 Score: 70
Period size: 16 Copynumber: 4.3 Consensus size: 16
72429895 AATTTGCGAA
72429905 AAATAATATAT-A-AT
1 AAATAATATATAATAT
*
72429919 AAAGAATA-ATAATAT
1 AAATAATATATAATAT
72429934 AAATAATATATAATA-
1 AAATAATATATAATAT
*
72429949 AAATACTTATATAATAT
1 AAATA-ATATATAATAT
72429966 ATAATA
1 A-AATA
72429972 TGAAAATAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
13 2 0.05
14 8 0.18
15 14 0.32
16 15 0.34
17 1 0.02
18 4 0.09
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (16 bp):
AAATAATATATAATAT
Found at i:72430021 original size:20 final size:20
Alignment explanation
Indices: 72429998--72430038 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
72429988 AAATAAAACA
72429998 AATAACAAT-ATAATATATAT
1 AATAACAATAATAA-ATATAT
*
72430018 AATAATAATAATAAATATAT
1 AATAACAATAATAAATATAT
72430038 A
1 A
72430039 GGGCTAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
AATAACAATAATAAATATAT
Found at i:72433273 original size:40 final size:40
Alignment explanation
Indices: 72433190--72433409 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
72433180 ACCCAAGTAT
** * *
72433190 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
72433228 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
72433268 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
72433308 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGTACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
72433348 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
72433388 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGTCTTAGCCCGGATAT
72433410 CATTCGAATA
Statistics
Matches: 151, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 122 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:72448691 original size:24 final size:23
Alignment explanation
Indices: 72448637--72448692 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
72448627 AATTTGACGT
*
72448637 ATAA-ATATAAAAAACAAATGTG
1 ATAACATATAAAAAAAAAATGTG
*
72448659 ATAATATATAAAAAAAATAATGT-
1 ATAACATATAAAAAAAA-AATGTG
72448682 AGTAACATATA
1 A-TAACATATA
72448693 TCAAACAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 4 0.14
23 12 0.41
24 13 0.45
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (23 bp):
ATAACATATAAAAAAAAAATGTG
Found at i:72448760 original size:19 final size:19
Alignment explanation
Indices: 72448733--72448772 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72448723 GACTAGCATT
* *
72448733 TAATGTATAAATGATATAA
1 TAATATATAAAAGATATAA
*
72448752 TAATATATAAAAGATTTAA
1 TAATATATAAAAGATATAA
72448771 TA
1 TA
72448773 CAATAATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (19 bp):
TAATATATAAAAGATATAA
Found at i:72448891 original size:15 final size:14
Alignment explanation
Indices: 72448816--72448922 Score: 69
Period size: 15 Copynumber: 7.6 Consensus size: 14
72448806 CGTAAGAAAA
72448816 AAATAATATATAAT
1 AAATAATATATAAT
* *
72448830 ATAT-ATAAATAAT
1 AAATAATATATAAT
* * **
72448843 -AACAATTTGCAA-
1 AAATAATATATAAT
72448855 AAATAATATATAAT
1 AAATAATATATAAT
*
72448869 AAACAATAGTA-ATAT
1 AAATAATA-TATA-AT
72448884 AAATAATATATAAT
1 AAATAATATATAAT
*
72448898 AAAATACTTATATAAT
1 -AAATA-ATATATAAT
*
72448914 ATATAATAT
1 AAATAATAT
72448923 GAAAATAAGG
Statistics
Matches: 68, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
12 1 0.01
13 20 0.29
14 18 0.26
15 21 0.31
16 8 0.12
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (14 bp):
AAATAATATATAAT
Found at i:72448903 original size:27 final size:29
Alignment explanation
Indices: 72448855--72448912 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
72448845 CAATTTGCAA
*
72448855 AAATAATATATAATAAACAATAGTAATAT
1 AAATAATATATAATAAACAATACTAATAT
*
72448884 AAATAATATATAAT-AA-AATACTTATAT
1 AAATAATATATAATAAACAATACTAATAT
72448911 AA
1 AA
72448913 TATATAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 11 0.41
28 2 0.07
29 14 0.52
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (29 bp):
AAATAATATATAATAAACAATACTAATAT
Found at i:72451892 original size:19 final size:19
Alignment explanation
Indices: 72451860--72451896 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72451850 ACTTAGGTTG
*
72451860 AGAATTGGCCAAATGGGCT
1 AGAATGGGCCAAATGGGCT
*
72451879 AGAATGGGCTAAATGGGC
1 AGAATGGGCCAAATGGGC
72451897 CTCATTGGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.19
Consensus pattern (19 bp):
AGAATGGGCCAAATGGGCT
Found at i:72452024 original size:29 final size:29
Alignment explanation
Indices: 72451991--72452093 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
72451981 TGTGATTTGA
*
72451991 GCCTAATGGGCAATATGAATAAGAATTGG
1 GCCTAATGGGCCATATGAATAAGAATTGG
* * * *
72452020 GCCTAGTGGGCCATAAGAATATGAACTGG
1 GCCTAATGGGCCATATGAATAAGAATTGG
*
72452049 G-CTAGATGGGCCATTTGAATAAG-ATTGG
1 GCCTA-ATGGGCCATATGAATAAGAATTGG
*
72452077 GCCTAGTGGGCCATATG
1 GCCTAATGGGCCATATG
72452094 CATGTATGTA
Statistics
Matches: 60, Mismatches: 12, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 18 0.30
29 42 0.70
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GCCTAATGGGCCATATGAATAAGAATTGG
Found at i:72461672 original size:40 final size:40
Alignment explanation
Indices: 72461590--72461756 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
72461580 AAATTGAATG
* * ** ***
72461590 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
* *
72461629 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
* * **
72461669 ATATCCGGGCTAAGACCCGAATGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGGTT
* *
72461709 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCA-AGTGGTT
72461749 ATATCCGG
1 ATATCCGG
72461757 TTATATTCCG
Statistics
Matches: 102, Mismatches: 22, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
39 16 0.16
40 83 0.81
41 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGGTT
Found at i:72465382 original size:12 final size:12
Alignment explanation
Indices: 72465365--72465394 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
72465355 TTAAGGAGTT
*
72465365 ACACGGGGTAGG
1 ACACGGGCTAGG
72465377 ACACGGGCTAGG
1 ACACGGGCTAGG
72465389 ACACGG
1 ACACGG
72465395 CTATGTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.23, G:0.43, T:0.07
Consensus pattern (12 bp):
ACACGGGCTAGG
Found at i:72474649 original size:28 final size:28
Alignment explanation
Indices: 72474617--72474688 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
72474607 GTAGCGTAGA
72474617 TACCGAAATTACCCCTAAAGAGCAAAAT
1 TACCGAAATTACCCCTAAAGAGCAAAAT
72474645 TACCGAAATTACCCCTAAAGAGCAAAAT
1 TACCGAAATTACCCCTAAAGAGCAAAAT
*
72474673 TACCGATA-TACCCCTA
1 TACCGAAATTACCCCTA
72474689 GGGTTTTAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 8 0.19
28 35 0.81
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
TACCGAAATTACCCCTAAAGAGCAAAAT
Found at i:72476202 original size:93 final size:93
Alignment explanation
Indices: 72476090--72476261 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72476080 GCCCATAAGT
* *
72476090 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72476155 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72476183 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72476248 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72476262 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72476257 original size:46 final size:46
Alignment explanation
Indices: 72476082--72476257 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
72476072 TGTAACCCGC
* * *
72476082 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72476128 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
72476178 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
72476221 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72476258 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72478683 original size:30 final size:30
Alignment explanation
Indices: 72478639--72478727 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72478629 CAAAGATAAC
72478639 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72478668 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72478698 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72478728 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72478687 original size:15 final size:15
Alignment explanation
Indices: 72478639--72478718 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72478629 CAAAGATAAC
*
72478639 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72478653 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72478668 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72478683 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72478698 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72478713 AAGAAA
1 AAGAAA
72478719 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72478727 original size:15 final size:15
Alignment explanation
Indices: 72478650--72478727 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72478640 AGAAAACCGA
72478650 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72478665 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72478679 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72478694 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72478710 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72478725 ATA
1 ATA
72478728 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72481711 original size:47 final size:49
Alignment explanation
Indices: 72481634--72481768 Score: 167
Period size: 46 Copynumber: 2.9 Consensus size: 49
72481624 TGTAACCCGC
*
72481634 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
72481684 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
72481727 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCA
72481769 AACCATCCTA
Statistics
Matches: 73, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 2 0.03
46 29 0.40
47 29 0.40
48 2 0.03
49 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:72485420 original size:20 final size:20
Alignment explanation
Indices: 72485395--72485432 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72485385 GTTTATTCGC
*
72485395 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
72485415 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
72485433 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:72485942 original size:12 final size:12
Alignment explanation
Indices: 72485925--72485949 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72485915 CACCTTAGGG
72485925 TTTTTTCCTCTC
1 TTTTTTCCTCTC
72485937 TTTTTTCCTCTC
1 TTTTTTCCTCTC
72485949 T
1 T
72485950 AGCCGAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTTTCCTCTC
Found at i:72487065 original size:28 final size:28
Alignment explanation
Indices: 72487033--72487101 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
72487023 GCGTAGATCA
72487033 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
72487061 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72487089 CGATA-TACCCCTA
1 CGAAATTACCCCTA
72487102 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:72493400 original size:20 final size:20
Alignment explanation
Indices: 72493375--72493412 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72493365 GTTTATTCGC
*
72493375 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
72493395 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
72493413 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:72495068 original size:28 final size:28
Alignment explanation
Indices: 72495036--72495104 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
72495026 GCGTAGATCA
72495036 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
72495064 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72495092 CGATA-TACCCCTA
1 CGAAATTACCCCTA
72495105 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:72498539 original size:48 final size:48
Alignment explanation
Indices: 72498377--72498746 Score: 376
Period size: 48 Copynumber: 7.8 Consensus size: 48
72498367 GACATTTGGG
* * *
72498377 TGATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
** * * **
72498425 CCATATGAGAGCTAGTGTAAGACCAGGT-T-GGACATGGCATCGGCGT
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * *
72498471 TGA-CTGTGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* *
72498518 TGATATGAGAGCCAGTGTAAGACCATGTCTGAGACATGGCATC-GACA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
72498565 TTGATATGTGTGCTAATGAAAGACCATGTCTGGGACATGGCATCGGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* **
72498614 T-ATTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTAG-CA
1 TGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
72498661 TTGAGACGAGAGCTAGTGTAAGACCATGGCTGGGACATGGCATCGGCC-
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
72498709 TCGACATGTGAGCCAATGTAAGACCATGTTTGGAACAT
1 T-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
72498747 TTCATTGGCA
Statistics
Matches: 264, Mismatches: 48, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
45 20 0.08
46 16 0.06
47 25 0.09
48 198 0.75
49 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:72498610 original size:96 final size:95
Alignment explanation
Indices: 72498377--72498742 Score: 427
Period size: 96 Copynumber: 3.9 Consensus size: 95
72498367 GACATTTGGG
* * ** *
72498377 TGATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCACCATATGAGAGCTAGTG
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCCAGTG
* * *
72498442 TAAGACCAGGT-TGGACATGGCATCGGCGT
66 TAAGACCATGTCTGGACATGGCATCGACAT
* *
72498471 TGA-CTGTGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCCATGATATGAGAGCCAGTG
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCCAGTG
72498535 TAAGACCATGTCTGAGACATGGCATCGACAT
66 TAAGACCATGTCTG-GACATGGCATCGACAT
* * * * *
72498566 TGATATGTGTGCTAATGAAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATGAGAGCTAGT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGA-TATGAGAGCCAGT
*
72498630 GTAAGACCATGTCTGGGACATGGCAT-TAGCAT
65 GTAAGACCATGTCT-GGACATGGCATCGA-CAT
* * * * * * * *
72498662 TGAGACGAGAGCTAGTGTAAGACCATGGCTGGGACATGGCATCGGCC-TCGACATGTGAGCCAAT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GATATGAGAGCCAGT
*
72498726 GTAAGACCATGTTTGGA
65 GTAAGACCATGTCTGGA
72498743 ACATTTCATT
Statistics
Matches: 234, Mismatches: 30, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
93 64 0.27
94 5 0.02
95 23 0.10
96 140 0.60
97 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCCAGTG
TAAGACCATGTCTGGACATGGCATCGACAT
Found at i:72502459 original size:27 final size:27
Alignment explanation
Indices: 72502418--72502615 Score: 272
Period size: 27 Copynumber: 7.4 Consensus size: 27
72502408 CCCAAAATTA
* *
72502418 GTAAAATAACTGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
72502445 GTAAAATAACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
72502472 GTAAAATGATCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * * *
72502499 ATAAAATGACCGTAATAGCCCTCTAAG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
72502526 GTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
72502553 GTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
72502580 GTAAAATGATCGTAAT-GCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
72502606 GTAAAATGAC
1 GTAAAATGAC
72502616 TTGGATACCC
Statistics
Matches: 152, Mismatches: 19, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 18 0.12
27 134 0.88
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:72502835 original size:27 final size:27
Alignment explanation
Indices: 72502813--72502878 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
72502803 TCACTGTTAT
*
72502813 TGGTGGCTATGCCACAATTACTGATAC
1 TGGTAGCTATGCCACAATTACTGATAC
* * *
72502840 TGGTAGCTTTGCCACACTTACT-ATTTC
1 TGGTAGCTATGCCACAATTACTGA-TAC
*
72502867 TGGCAGCTATGC
1 TGGTAGCTATGC
72502879 TTCATTATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.33
Consensus pattern (27 bp):
TGGTAGCTATGCCACAATTACTGATAC
Found at i:72508939 original size:41 final size:42
Alignment explanation
Indices: 72508870--72508961 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
72508860 GAGATTTATG
* * *
72508870 TGTAAGACCAAGTCTGGGACATCGGCATCG-TATTTGGTTTA-A
1 TGTAAGA-CAAGTCTGGGAAATCAGCATCGATATTT-GATTACA
72508912 TGTAAGACAAGTCTGGGATAAT-AGCATCGATATTTGATTACA
1 TGTAAGACAAGTCTGGGA-AATCAGCATCGATATTTGATTACA
72508954 TGTAAGAC
1 TGTAAGAC
72508962 CACGCCTGGG
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
41 21 0.48
42 23 0.52
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACAAGTCTGGGAAATCAGCATCGATATTTGATTACA
Found at i:72515926 original size:40 final size:40
Alignment explanation
Indices: 72515852--72516029 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
72515842 GAGTCACGTA
* **
72515852 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAACAACTCGCACAATTG
* ** *
72515891 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
72515931 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAACAACTCGCAC-AATTG
* * * * *
72515971 CCTTCGGGTCTTAGCCCGGATACAATC-ACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAA-CAACTCGCACAATTG
* *
72516011 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
72516030 GTATCATTCA
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 101 0.85
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAACAACTCGCACAATTG
Found at i:72516013 original size:80 final size:80
Alignment explanation
Indices: 72515852--72516029 Score: 200
Period size: 80 Copynumber: 2.2 Consensus size: 80
72515842 GAGTCACGTA
* **
72515852 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTA
1 CCTTCGGG-TCTTAACCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATACA
* * *
72515915 GTAACTTGCACAATTG
65 ATAACTAGCACAAATG
** *
72515931 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATACA
1 CCTTCGGGTCTTAACCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATACA
* *
72515995 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
* *
72516011 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
72516030 GTATCATTCA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
79 12 0.14
80 68 0.82
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCTTCGGGTCTTAACCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATACAA
TAACTAGCACAAATG
Found at i:72519975 original size:27 final size:27
Alignment explanation
Indices: 72519935--72520046 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
72519925 AGGAAGCGTC
*
72519935 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
72519962 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
72519989 CTGGTGGCTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
72520017 TTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
72520043 CTGG
1 CTGG
72520047 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.68
28 16 0.23
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:72520041 original size:54 final size:54
Alignment explanation
Indices: 72519935--72520046 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
72519925 AGGAAGCGTC
* *
72519935 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
72519989 CTGGTGGCTTTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
72520043 CTGG
1 CTGG
72520047 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:72521275 original size:51 final size:49
Alignment explanation
Indices: 72521197--72521337 Score: 201
Period size: 49 Copynumber: 2.8 Consensus size: 49
72521187 TGTGAGGTCG
*
72521197 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GATCA
* * * * *
72521248 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGATCA
*
72521297 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
72521338 GCTTTGGCTA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
49 40 0.50
50 2 0.03
51 38 0.47
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGATCA
Found at i:72521322 original size:49 final size:51
Alignment explanation
Indices: 72521192--72521337 Score: 206
Period size: 51 Copynumber: 2.9 Consensus size: 51
72521182 TCTATTGTGA
* *
72521192 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTC
* * * *
72521243 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTC
* *
72521292 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
72521338 GCTTTGGCTA
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 40 0.48
50 2 0.02
51 41 0.49
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTC
Found at i:72522814 original size:21 final size:22
Alignment explanation
Indices: 72522790--72522833 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
72522780 GAAGGGACTT
*
72522790 TATGATGATGTTTGAC-TATGA
1 TATGATGATGTATGACTTATGA
72522811 TATGATGATGTATGACTTATGA
1 TATGATGATGTATGACTTATGA
72522833 T
1 T
72522834 TGCAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.43
Consensus pattern (22 bp):
TATGATGATGTATGACTTATGA
Found at i:72529688 original size:6 final size:6
Alignment explanation
Indices: 72529677--72529703 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
72529667 AAAATGTGTG
72529677 AATTAA AATTAA AATTAA AATTAA AAT
1 AATTAA AATTAA AATTAA AATTAA AAT
72529704 AACTTTAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATTAA
Found at i:72530129 original size:81 final size:81
Alignment explanation
Indices: 72529994--72530178 Score: 185
Period size: 81 Copynumber: 2.3 Consensus size: 81
72529984 ATATATATAT
* * * *
72529994 ATATAATAGATAAT-AATAATATGTAATAATGTATTGTTAAAATGTAAAATAATATAAAAATATA
1 ATATAAT--ATAATAAATAATAAGTAATAATATATTGTTAAAATATAAAATAATATAAAAATAGA
* * * *
72530058 TAAATATTATGTGATAAAA
64 AAAATATGAAGTAAT-AAA
* * * * *
72530077 ATATAATATAATAAATAATAAGTAATGATATA-TGTTAAAATATATATTAATATGATAATAGAAA
1 ATATAATATAATAAATAATAAGTAATAATATATTGTTAAAATATAAAATAATATAAAAATAGAAA
*
72530141 AATATGAAGTAATATA
66 AATATGAAGTAATAAA
*
72530157 ATAAAATATAAGTAAATAATAA
1 ATATAATATAA-TAAATAATAA
72530179 TATAAAATAT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 12 0.14
81 50 0.59
82 16 0.19
83 7 0.08
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (81 bp):
ATATAATATAATAAATAATAAGTAATAATATATTGTTAAAATATAAAATAATATAAAAATAGAAA
AATATGAAGTAATAAA
Found at i:72530164 original size:20 final size:18
Alignment explanation
Indices: 72530139--72530178 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 18
72530129 TGATAATAGA
72530139 AAAATATGAAGTAATATAAT
1 AAAATAT-AAGTAA-ATAAT
72530159 AAAATATAAGTAAATAAT
1 AAAATATAAGTAAATAAT
72530177 AA
1 AA
72530179 TATAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 6 0.30
20 7 0.35
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (18 bp):
AAAATATAAGTAAATAAT
Found at i:72530199 original size:9 final size:8
Alignment explanation
Indices: 72530079--72530224 Score: 61
Period size: 8 Copynumber: 18.0 Consensus size: 8
72530069 TGATAAAAAT
72530079 ATAATATA
1 ATAATATA
72530087 ATAA-ATA
1 ATAATATA
*
72530094 ATAA-GTA
1 ATAATATA
*
72530101 ATGATAT-
1 ATAATATA
** *
72530108 ATGTTAAA
1 ATAATATA
72530116 AT-ATATA
1 ATAATATA
* *
72530123 TTAATATG
1 ATAATATA
*
72530131 ATAATAGA
1 ATAATATA
*
72530139 AAAATATGA
1 ATAATAT-A
72530148 AGTAATATA
1 A-TAATATA
72530157 ATAAAATATA
1 AT--AATATA
72530167 AGTAA-ATA
1 A-TAATATA
72530175 ATAATATA
1 ATAATATA
*
72530183 AAATATATA
1 ATA-ATATA
72530192 ATACATATA
1 ATA-ATATA
* *
72530201 TTTATATTA
1 ATAATA-TA
*
72530210 A-AATAAA
1 ATAATATA
72530217 ATAATATA
1 ATAATATA
72530225 TATACAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
7 26 0.25
8 42 0.41
9 21 0.21
10 12 0.12
11 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (8 bp):
ATAATATA
Found at i:72530262 original size:26 final size:26
Alignment explanation
Indices: 72530207--72530264 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 26
72530197 TATATTTATA
*
72530207 TTAAAATAAAATAATATATATACAAT
1 TTAAAATAAAATAATATATAAACAAT
*
72530233 TTAAAAT-AAATAAGT-TATAAATAAT
1 TTAAAATAAAATAA-TATATAAACAAT
72530258 CTTAAAA
1 -TTAAAA
72530265 GGGATAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (26 bp):
TTAAAATAAAATAATATATAAACAAT
Found at i:72532545 original size:22 final size:22
Alignment explanation
Indices: 72532517--72532572 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
72532507 ACGGCCTCTA
*
72532517 GCACGGGAGTGTTCCTTAGACC
1 GCACGGGCGTGTTCCTTAGACC
*
72532539 GCACGGGCGTGTTTCTTAGACC
1 GCACGGGCGTGTTCCTTAGACC
72532561 GCACGGGCGTGT
1 GCACGGGCGTGT
72532573 GAGCCCTACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.14, C:0.27, G:0.36, T:0.23
Consensus pattern (22 bp):
GCACGGGCGTGTTCCTTAGACC
Found at i:72540375 original size:96 final size:96
Alignment explanation
Indices: 72540263--72540436 Score: 249
Period size: 96 Copynumber: 1.8 Consensus size: 96
72540253 ATAACGGTGT
** * *
72540263 GATGCCATGCCCCAGACATGGTCTTATACGGGACCTCATATGGATGGCAATGCCATATCCCAGAT
1 GATGCCATGCCCCAGACATCATCCTATACGGGACCTCATATCGATGGCAATGCCATATCCCAGAT
72540328 ATGGTCTTACATGAGATCTCATACTGATGCC
66 ATGGTCTTACATGAGATCTCATACTGATGCC
* * * * * * *
72540359 GATGCCCTGTCCCAGACGTCATCCTATACGGGATCTCTTATCGATGTCGATGCCATATCCCAGAT
1 GATGCCATGCCCCAGACATCATCCTATACGGGACCTCATATCGATGGCAATGCCATATCCCAGAT
72540424 ATGGTCTTACATG
66 ATGGTCTTACATG
72540437 GGATATCAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 67 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (96 bp):
GATGCCATGCCCCAGACATCATCCTATACGGGACCTCATATCGATGGCAATGCCATATCCCAGAT
ATGGTCTTACATGAGATCTCATACTGATGCC
Found at i:72540440 original size:48 final size:48
Alignment explanation
Indices: 72540233--72540440 Score: 152
Period size: 48 Copynumber: 4.4 Consensus size: 48
72540223 CAACCTAGCT
* * * * **
72540233 ATGGTCTTACAC-GAAGTCTCATAACGGTG-TGATGCCATGCCCCAGAC
1 ATGGTCTTACACGGGA-TCTCATATCGATGCCGATGCCATATCCCAGAC
* * * * * *
72540280 ATGGTCTTATACGGGACCTCATATGGATGGCAATGCCATATCCCAGAT
1 ATGGTCTTACACGGGATCTCATATCGATGCCGATGCCATATCCCAGAC
* * * *
72540328 ATGGTCTTACATGAGATCTCATA-CTGATGCCGATGCCCTGTCCCAGAC
1 ATGGTCTTACACGGGATCTCATATC-GATGCCGATGCCATATCCCAGAC
* ** * * * * *
72540376 GTCATCCTATACGGGATCTCTTATCGATGTCGATGCCATATCCCAGAT
1 ATGGTCTTACACGGGATCTCATATCGATGCCGATGCCATATCCCAGAC
*
72540424 ATGGTCTTACATGGGAT
1 ATGGTCTTACACGGGAT
72540441 ATCAATACTC
Statistics
Matches: 118, Mismatches: 39, Indels: 7
0.72 0.24 0.04
Matches are distributed among these distances:
47 20 0.17
48 97 0.82
49 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (48 bp):
ATGGTCTTACACGGGATCTCATATCGATGCCGATGCCATATCCCAGAC
Found at i:72541554 original size:24 final size:24
Alignment explanation
Indices: 72541527--72541590 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
72541517 GCCCAAATGT
72541527 CAAAATTTTCAAAAAAAATTTTGA
1 CAAAATTTTCAAAAAAAATTTTGA
72541551 CAAAATTTTCAAAAAAAATTTTGA
1 CAAAATTTTCAAAAAAAATTTTGA
*
72541575 CAAAATTTTCACAAAA
1 CAAAATTTTCAAAAAA
72541591 TCATTTTGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.55, C:0.11, G:0.03, T:0.31
Consensus pattern (24 bp):
CAAAATTTTCAAAAAAAATTTTGA
Found at i:72541555 original size:11 final size:11
Alignment explanation
Indices: 72541541--72541591 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
72541531 ATTTTCAAAA
72541541 AAAATTTTGAC
1 AAAATTTTGAC
* *
72541552 AAAATTTTCAAAA
1 AAAATTTT--GAC
72541565 AAAATTTTGAC
1 AAAATTTTGAC
*
72541576 AAAATTTTCAC
1 AAAATTTTGAC
72541587 AAAAT
1 AAAAT
72541592 CATTTTGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
11 24 0.73
13 9 0.27
ACGTcount: A:0.53, C:0.10, G:0.04, T:0.33
Consensus pattern (11 bp):
AAAATTTTGAC
Found at i:72541579 original size:13 final size:13
Alignment explanation
Indices: 72541528--72541572 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
72541518 CCCAAATGTC
72541528 AAAATTTTCAAAA
1 AAAATTTTCAAAA
* *
72541541 AAAATTTT--GAC
1 AAAATTTTCAAAA
72541552 AAAATTTTCAAAA
1 AAAATTTTCAAAA
72541565 AAAATTTT
1 AAAATTTT
72541573 GACAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.35
13 17 0.65
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.36
Consensus pattern (13 bp):
AAAATTTTCAAAA
Found at i:72553794 original size:40 final size:40
Alignment explanation
Indices: 72553686--72553935 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
72553676 CGGGATTTAA
* * * * *
72553686 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72553726 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72553766 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72553806 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72553846 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72553886 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72553926 CCGGATATAT
1 CCGGATATAT
72553936 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72561843 original size:43 final size:43
Alignment explanation
Indices: 72561780--72561867 Score: 99
Period size: 43 Copynumber: 2.0 Consensus size: 43
72561770 ATAGGATTTC
* *
72561780 CGATATGTGTTCTCATGTAAGCCCACGTCTAGGACATTGGCAT
1 CGATATGTGTTCTCATGTAAGACCACGTCTAGGACATCGGCAT
* * *
72561823 CGATATGTGATT-TCGA-GTAAGACCATGTTTGGGACATCGGCAT
1 CGATATGTG-TTCTC-ATGTAAGACCACGTCTAGGACATCGGCAT
72561866 CG
1 CG
72561868 TAACTGTGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
43 35 0.92
44 3 0.08
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATGTGTTCTCATGTAAGACCACGTCTAGGACATCGGCAT
Found at i:72561886 original size:43 final size:43
Alignment explanation
Indices: 72561811--72561920 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
72561801 CCCACGTCTA
* *
72561811 GGACATTGGCATCGATATGTGATTTCGAGTAAGACCATGTTTG
1 GGACATCGGCATCGATATGTGATTTCGAGTAAGACCATATTTG
* *
72561854 GGACATCGGCATCG-TAACTGTGA-TTCGTGTAAGACCCTATTTG
1 GGACATCGGCATCGAT-A-TGTGATTTCGAGTAAGACCATATTTG
* *
72561897 GGATAGT-GGCATCGACATGTGATT
1 GGACA-TCGGCATCGATATGTGATT
72561921 GTAACGCCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
42 6 0.11
43 44 0.79
44 6 0.11
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
GGACATCGGCATCGATATGTGATTTCGAGTAAGACCATATTTG
Found at i:72563346 original size:93 final size:93
Alignment explanation
Indices: 72563231--72563402 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
72563221 CGCCCATAAG
* *
72563231 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
72563296 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
72563324 CGAACTCGGATTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
72563389 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72563403 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72563399 original size:46 final size:46
Alignment explanation
Indices: 72563224--72563399 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
72563214 TGTAACCCGC
* * *
72563224 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
72563270 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
72563320 -C-TCA-CGAACTCGGATTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72563363 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72563400 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72566500 original size:39 final size:39
Alignment explanation
Indices: 72566456--72566620 Score: 172
Period size: 39 Copynumber: 4.2 Consensus size: 39
72566446 CGGAATATAA
72566456 CCGGATATAACACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72566495 CCGGATAGAATACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72566534 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72566574 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
72566613 CCGGATAT
1 CCGGATAT
72566621 CATTCAATTT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 55 0.52
40 50 0.47
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72572535 original size:40 final size:40
Alignment explanation
Indices: 72572469--72572635 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
72572459 AAATTGAATG
* * *
72572469 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
72572508 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
72572548 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
72572588 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
72572628 ATATCCGG
1 ATATCCGG
72572636 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72580545 original size:40 final size:40
Alignment explanation
Indices: 72580479--72580645 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
72580469 AAATTGAATG
* * *
72580479 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
72580518 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
72580558 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
72580598 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
72580638 ATATCCGG
1 ATATCCGG
72580646 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72583093 original size:63 final size:63
Alignment explanation
Indices: 72583017--72583147 Score: 156
Period size: 63 Copynumber: 2.1 Consensus size: 63
72583007 ATGGGTTAGG
* * * * * *
72583017 GACACTGGCGTGTGTCCAGGTCTTGTGACTTACTGTTTACAATATAGGACCACACGGGCTAGA-
1 GACACTAGCGTGTGTCCAGGCCGTGTGACTCACTGTTTAAAATATAAGACCACACGGGC-AGAC
* * * *
72583080 GACACTAGTGTGTGTCCAGGCCGTGTGACTCACTTTTTAAAATTTAAGACCACATGGGCAGAC
1 GACACTAGCGTGTGTCCAGGCCGTGTGACTCACTGTTTAAAATATAAGACCACACGGGCAGAC
72583143 GACAC
1 GACAC
72583148 CGGCATGTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 3 0.05
63 54 0.95
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (63 bp):
GACACTAGCGTGTGTCCAGGCCGTGTGACTCACTGTTTAAAATATAAGACCACACGGGCAGAC
Found at i:72594443 original size:6 final size:6
Alignment explanation
Indices: 72594432--72594461 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
72594422 AAAAATTTTA
72594432 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT
72594462 TAACTAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (6 bp):
GAAAAT
Found at i:72606168 original size:93 final size:93
Alignment explanation
Indices: 72606055--72606226 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
72606045 CGCCCATAAG
*
72606055 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72606120 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72606148 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72606213 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72606227 TCAACCATCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72606223 original size:46 final size:46
Alignment explanation
Indices: 72606048--72606223 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
72606038 TGTAACCCGC
* *
72606048 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72606094 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72606144 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72606187 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72606224 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72613659 original size:46 final size:46
Alignment explanation
Indices: 72613592--72613800 Score: 189
Period size: 46 Copynumber: 4.8 Consensus size: 46
72613582 TGTAACCCGC
*
72613592 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
72613638 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* *
72613688 -C-TCA-CGAACTCGGACTCAACTCAAC-AGTT----CG---ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
72613723 -CAT---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
72613765 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
72613801 ATGCTCAACC
Statistics
Matches: 137, Mismatches: 8, Indels: 36
0.76 0.04 0.20
Matches are distributed among these distances:
34 21 0.15
35 9 0.07
36 1 0.01
37 1 0.01
39 2 0.01
42 3 0.02
43 3 0.02
46 66 0.48
47 20 0.15
48 3 0.02
49 2 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Done.