Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 255 of 427
Found at i:72971660 original size:97 final size:94
Alignment explanation
Indices: 72971315--72971669 Score: 292
Period size: 92 Copynumber: 3.7 Consensus size: 94
72971305 TGAGAGCCAG
* * * * * * *
72971315 TGTAAGACATGTCTGGGACAT-GCATCAGCATTGA-GACGAGAGCTAGTGTAAGACATGTCTAGG
1 TGTAAGACCTGTCTGGGACATGGCATCAGC-TTTATG-TG-TAGCCAGTGTAAGACCTGTCTGGG
* * * * *
72971378 ACAT-GCATCGGCTTCAAGATATACAAGCTAT
63 ACATGGCATCGACCTCAATATATAAAAGTTAT
* *
72971409 TGTAAGCCCTGTCTGGGACATGGCATCAGCTTGT-TGTGT-GTCAGTGTAAGACCTGTCTGGGAC
1 TGTAAGACCTGTCTGGGACATGGCATCAGCTT-TATGTGTAGCCAGTGTAAGACCTGTCTGGGAC
* *
72971472 ATGGCATCGACAC-C-ATAGATAAAAGTCAT
65 ATGGCATCGAC-CTCAATATATAAAAGTTAT
* * * *** * *
72971501 TGTAAGACCTGTCTCGGACATGACATCAACACCGATAGATGAGAGCCACTGTAAGACCTGTCTGG
1 TGTAAGACCTGTCTGGGACATGGCATCAGC-TTTAT-G-TG-TAGCCAGTGTAAGACCTGTCTGG
* *
72971566 GATATGGCATCGACCTCAATATATAAAAGTTAG
62 GACATGGCATCGACCTCAATATATAAAAGTTAT
* *
72971599 TGTAAGACCTGTCTGGGACACGGCATCGGCTTTAATGTGCTAGCCAGTGTAAGACCATGTCTGGG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCTTT-ATGTG-TAGCCAGTGTAAGACC-TGTCTGGG
*
72971664 ATATGG
63 ACATGG
72971670 TGTCGGCATC
Statistics
Matches: 205, Mismatches: 41, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
92 58 0.28
93 9 0.04
94 23 0.11
95 11 0.05
96 17 0.08
97 48 0.23
98 39 0.19
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (94 bp):
TGTAAGACCTGTCTGGGACATGGCATCAGCTTTATGTGTAGCCAGTGTAAGACCTGTCTGGGACA
TGGCATCGACCTCAATATATAAAAGTTAT
Found at i:72975484 original size:48 final size:49
Alignment explanation
Indices: 72975415--72975585 Score: 220
Period size: 49 Copynumber: 3.5 Consensus size: 49
72975405 CTTGTTGTGT
72975415 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACC-ATAGATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
* * *
72975463 GTCAGTGTAAGACCTGCCTGGGACATGACATCGACACCGATAGATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
* * * * * *
72975512 GCCAGTGTAAGACCTGTCTGGGATATTGCATCAAC-CTCGATATATGTAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAAA
* *
72975561 GTTAGTGTAAGACCTGTTTGGGACA
1 GTCAGTGTAAGACCTGTCTGGGACA
72975586 CGCATTGACT
Statistics
Matches: 105, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
48 37 0.35
49 68 0.65
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
Found at i:72975525 original size:49 final size:48
Alignment explanation
Indices: 72975417--72975534 Score: 191
Period size: 48 Copynumber: 2.4 Consensus size: 48
72975407 TGTTGTGTGT
* *
72975417 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCATAGATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGACATCGACACCATAGATGAAAGC
* *
72975465 CAGTGTAAGACCTGCCTGGGACATGACATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGACATCGACACC-ATAGATGAAAGC
72975514 CAGTGTAAGACCTGTCTGGGA
1 CAGTGTAAGACCTGTCTGGGA
72975535 TATTGCATCA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
48 34 0.53
49 30 0.47
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGACATCGACACCATAGATGAAAGC
Found at i:72978069 original size:14 final size:15
Alignment explanation
Indices: 72978050--72978078 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72978040 GAATGAAATT
72978050 TTCACACAT-ATAAA
1 TTCACACATAATAAA
72978064 TTCACACATAATAAA
1 TTCACACATAATAAA
72978079 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:72990442 original size:40 final size:40
Alignment explanation
Indices: 72990365--72990582 Score: 359
Period size: 40 Copynumber: 5.5 Consensus size: 40
72990355 AAACCAAGTA
* *
72990365 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72990404 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72990444 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72990484 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72990524 CCCTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72990564 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72990583 TTATCATCCG
Statistics
Matches: 168, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 154 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72992472 original size:40 final size:38
Alignment explanation
Indices: 72992389--72992593 Score: 173
Period size: 39 Copynumber: 5.2 Consensus size: 38
72992379 CGGAGTTTAA
* ** * *
72992389 CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATATC-ACTCGCACAAATGCCTTCGGG-CTTAGC
* * * *
72992429 CCGGTTATGGTCACCCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATAT-ATCACTCGCACAAATGCCTTCGGG-CTTAGC
*
72992469 CCGGATATCA-CAACTCGCACAATTGCCTTCGGGCTTAGC
1 CCGGATAT-ATC-ACTCGCACAAATGCCTTCGGGCTTAGC
*
72992508 CCGGATATCAT-AGCTCGCACAATTGCCTTCGGGCTTAGC
1 CCGGATAT-ATCA-CTCGCACAAATGCCTTCGGGCTTAGC
* * *
72992547 CCGGATATCA-CAATTCGTACAATTGCCTTCGGGCTTAGC
1 CCGGATAT-ATC-ACTCGCACAAATGCCTTCGGGCTTAGC
72992586 CCGGATAT
1 CCGGATAT
72992594 CACAATTCGC
Statistics
Matches: 142, Mismatches: 17, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 84 0.59
40 56 0.39
41 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (38 bp):
CCGGATATATCACTCGCACAAATGCCTTCGGGCTTAGC
Found at i:72992525 original size:39 final size:39
Alignment explanation
Indices: 72992444--72992606 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
72992434 TATGGTCACC
* *
72992444 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72992484 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72992523 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
72992562 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
72992601 CGCACA
1 CGCACA
72992607 CTCATTCACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72998029 original size:27 final size:30
Alignment explanation
Indices: 72997998--72998062 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 30
72997988 TGAATTTTGA
72997998 TGAAATTGAACT-ATTT-GGGA-TAAATTG
1 TGAAATTGAACTGATTTGGGGACTAAATTG
* *
72998025 TGAAAAT-AA-TGTTTTGGGGACTAAATTG
1 TGAAATTGAACTGATTTGGGGACTAAATTG
72998053 TG-AATTGAAC
1 TGAAATTGAAC
72998063 ATGTTGTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
25 1 0.03
26 5 0.17
27 13 0.43
28 11 0.37
ACGTcount: A:0.37, C:0.05, G:0.23, T:0.35
Consensus pattern (30 bp):
TGAAATTGAACTGATTTGGGGACTAAATTG
Found at i:72998663 original size:43 final size:42
Alignment explanation
Indices: 72998561--72998663 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
72998551 GGTTTACGTA
** * * *
72998561 TAAGACCATGTCTGGGACATCGGTATCGTATCTGATTTCGTG
1 TAAGACCATGTCTGGGACAGAGGCATCGTATCTGATTACATG
*
72998603 TAAGACCCTGTCTGGGACAGAGGCATCGATAT-TGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCG-TATCTG-ATTACATG
*
72998646 TAAGACCATGTCCGGGAC
1 TAAGACCATGTCTGGGAC
72998664 GTCGACATTG
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACAGAGGCATCGTATCTGATTACATG
Found at i:73007463 original size:31 final size:31
Alignment explanation
Indices: 73007427--73007490 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
73007417 TTAAAAAAAG
*
73007427 ATAAAATATAATTTACTGTTATTAATTTAAA
1 ATAAAATATAATTTACTGATATTAATTTAAA
73007458 ATAAAATATAATTTACTGATATTAATTTAAA
1 ATAAAATATAATTTACTGATATTAATTTAAA
73007489 AT
1 AT
73007491 GGTCATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (31 bp):
ATAAAATATAATTTACTGATATTAATTTAAA
Found at i:73007951 original size:20 final size:20
Alignment explanation
Indices: 73007926--73007996 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
73007916 GTTTAGGGTA
*
73007926 TTAGGGTTGATTGATTAAAT
1 TTAGGGTTAATTGATTAAAT
73007946 TTAGGG---ATTGATTAAA-
1 TTAGGGTTAATTGATTAAAT
*
73007962 TTAAGGTTAATTGATTAAAT
1 TTAGGGTTAATTGATTAAAT
73007982 TTAGGGTTAATTGAT
1 TTAGGGTTAATTGAT
73007997 ACATAATCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
16 5 0.11
17 10 0.22
19 10 0.22
20 20 0.44
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.44
Consensus pattern (20 bp):
TTAGGGTTAATTGATTAAAT
Found at i:73007956 original size:17 final size:17
Alignment explanation
Indices: 73007934--73007987 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
73007924 TATTAGGGTT
73007934 GATTGATTAAATTTAGG
1 GATTGATTAAATTTAGG
*
73007951 GATTGATTAAATTAAGG
1 GATTGATTAAATTTAGG
*
73007968 TTAATTGATTAAATTTAGG
1 --GATTGATTAAATTTAGG
73007987 G
1 G
73007988 TTAATTGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
17 16 0.52
19 15 0.48
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (17 bp):
GATTGATTAAATTTAGG
Found at i:73008759 original size:126 final size:126
Alignment explanation
Indices: 73008531--73008911 Score: 602
Period size: 126 Copynumber: 3.0 Consensus size: 126
73008521 TTTCTGCAAG
* * * *
73008531 AATAATTTTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATTCATTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAAAGCTTCAAGCAGGATGCACTGTC
* * * *
73008596 AGCAAAATTTCTGAAAAAAGTTTCCACGTGGATGCTCTTTTGCTACAGTAGTTCATAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * * *
73008657 AATAATTCTAAGTAGATGTTTCTGAATAAATAGTGTCGAAAAAGTTTCAAGCAAGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAAAGCTTCAAGCAGGATGCACTGTC
73008722 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
73008783 AATAATTCTGAGTAGACGTTTTTGAACAAATAGTGTCGAAAACA-CTTCAAGCAGGATGCAGTGT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAA-AGCTTCAAGCAGGATGCACTGT
*
73008847 CAGTAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
65 CAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
73008909 AAT
1 AAT
73008912 GAGGCTATAA
Statistics
Matches: 233, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
126 232 1.00
127 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAAAGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:73014619 original size:12 final size:13
Alignment explanation
Indices: 73014595--73014623 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
73014585 GGGTCATAAC
73014595 TATTGCATTTATT
1 TATTGCATTTATT
73014608 TATTGC-TTTATT
1 TATTGCATTTATT
73014620 TATT
1 TATT
73014624 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:73016881 original size:40 final size:40
Alignment explanation
Indices: 73016822--73016963 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
73016812 AAATTGAATG
* * *
73016822 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
73016862 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
73016902 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
73016942 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
73016964 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:73016987 original size:40 final size:39
Alignment explanation
Indices: 73016860--73016989 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
73016850 ATGCTGGAAA
* * *
73016860 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
73016901 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
73016939 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
73016980 TTATATCCGG
1 TTATATCCGG
73016990 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:73024912 original size:40 final size:40
Alignment explanation
Indices: 73024853--73024994 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
73024843 AAATTGAATG
* * *
73024853 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
73024893 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
73024933 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
73024973 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
73024995 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:73025018 original size:40 final size:39
Alignment explanation
Indices: 73024891--73025020 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
73024881 ATGCTGGAAA
* * *
73024891 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
73024932 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
73024970 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
73025011 TTATATCCGG
1 TTATATCCGG
73025021 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:73032866 original size:7 final size:7
Alignment explanation
Indices: 73032854--73032878 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73032844 TATTACTTAT
73032854 ATACATA
1 ATACATA
73032861 ATACATA
1 ATACATA
73032868 ATACATA
1 ATACATA
73032875 ATAC
1 ATAC
73032879 TAAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:73032904 original size:14 final size:14
Alignment explanation
Indices: 73032854--73032909 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
73032844 TATTACTTAT
*
73032854 ATACATAATAC-ATA
1 ATACAAAATACTA-A
*
73032868 ATACATAATACTAA
1 ATACAAAATACTAA
* *
73032882 ATGCTAAATACTAA
1 ATACAAAATACTAA
73032896 ATACAAAATGACTA
1 ATACAAAAT-ACTA
73032910 TTTTATTATG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 30 0.86
15 5 0.14
ACGTcount: A:0.55, C:0.14, G:0.04, T:0.27
Consensus pattern (14 bp):
ATACAAAATACTAA
Found at i:73033954 original size:45 final size:44
Alignment explanation
Indices: 73033883--73034011 Score: 127
Period size: 46 Copynumber: 2.8 Consensus size: 44
73033873 ATGCAAACAT
**
73033883 CATAAATGAAAAAAAATCAAGCAGTATTGAAATTTTAA-T-ACTTG
1 CATAAATG-AAAAAAATCAAATAGTATTGAAA-TTTAATTAACTTG
* *
73033927 CATAAATGAATAAAATATCAAATAGTATTTCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAA-ATCAAATAGTA-TTGAAATTTAATT-AACTTG
* *
73033975 CATAAATTAAAAAAATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAATCAAATAGTATTG-AAATTTAA
73034012 AATTATCACT
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
43 2 0.03
44 12 0.17
45 16 0.23
46 24 0.34
47 4 0.06
48 13 0.18
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (44 bp):
CATAAATGAAAAAAATCAAATAGTATTGAAATTTAATTAACTTG
Found at i:73034016 original size:48 final size:48
Alignment explanation
Indices: 73033883--73034011 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 48
73033873 ATGCAAACAT
* ** * *
73033883 CATAAATGAA-AAAAAATCAAGCAGTATTGAAATTTTAA-T--ACTTG
1 CATAAATGAATAAAATATCAAATAGTATTGAAAATTTAATTAAATTTG
**
73033927 CATAAATGAATAAAATATCAAATAGTATTTCAAATTTAATTAAATTTG
1 CATAAATGAATAAAATATCAAATAGTATTGAAAATTTAATTAAATTTG
* *
73033975 CATAAATTAA-AAAA-ATCGAATAGTATTGAAAATTTAA
1 CATAAATGAATAAAATATCAAATAGTATTGAAAATTTAA
73034012 AATTATCACT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
44 10 0.14
45 22 0.31
46 21 0.30
47 4 0.06
48 13 0.19
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (48 bp):
CATAAATGAATAAAATATCAAATAGTATTGAAAATTTAATTAAATTTG
Found at i:73034144 original size:11 final size:11
Alignment explanation
Indices: 73034128--73034202 Score: 80
Period size: 11 Copynumber: 6.9 Consensus size: 11
73034118 ATTTAAACAA
73034128 AGAATTTTGAT
1 AGAATTTTGAT
73034139 AGAATTTTGAT
1 AGAATTTTGAT
*
73034150 AGAAATTTGAT
1 AGAATTTTGAT
*
73034161 AGAATTTTGAG
1 AGAATTTTGAT
* **
73034172 AAAATTTCAAT
1 AGAATTTTGAT
*
73034183 -GAAATTTGAT
1 AGAATTTTGAT
*
73034193 AGATTTTTGA
1 AGAATTTTGA
73034203 AGGGAATATT
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
10 6 0.12
11 44 0.88
ACGTcount: A:0.40, C:0.01, G:0.17, T:0.41
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:73047393 original size:2 final size:2
Alignment explanation
Indices: 73047386--73047412 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
73047376 AGAATTAAAC
73047386 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
73047413 GGATGATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73054905 original size:42 final size:42
Alignment explanation
Indices: 73054844--73054929 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
73054834 GGGGAAGAAA
*
73054844 TGTAACATCCCGAAATAGGGCCTAGTCAGAACAGTGGTTTCG
1 TGTAACATCCCGAAATAGGGCCTAATCAGAACAGTGGTTTCG
* * * * *
73054886 TGTAATATCCCGAATTAGGGCCTAATCATAATAGTTGTTTCG
1 TGTAACATCCCGAAATAGGGCCTAATCAGAACAGTGGTTTCG
73054928 TG
1 TG
73054930 ACCACAAATC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAACATCCCGAAATAGGGCCTAATCAGAACAGTGGTTTCG
Found at i:73061250 original size:336 final size:336
Alignment explanation
Indices: 73060387--73061392 Score: 1928
Period size: 335 Copynumber: 3.0 Consensus size: 336
73060377 TGAGCAAGGA
*
73060387 CTAAATTGTAAAAATGGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
1 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
*
73060452 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAACTATAGATCAAAAAC
66 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
*
73060517 CCGAAGTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCATGAACTTGTACAACTTTTGCAAA
131 CCGAACTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCATGAACTTGTACAACTTTTGCAAA
73060582 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
196 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
73060647 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
261 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
73060712 TTGAGTACTTT
326 TTGAGTACTTT
73060723 CTAAATTGT-AAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
1 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
73060787 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
66 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
*
73060852 CCGAACTGAATCGTAGAAAAGAGAAAATAGCCGATAAGTCCATGAACTTGTACAACTTTTGCAAA
131 CCGAACTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCATGAACTTGTACAACTTTTGCAAA
73060917 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
196 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
*
73060982 TATGGTATTGTCTATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
261 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
73061047 TTGAGTACTTT
326 TTGAGTACTTT
73061058 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
1 CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
73061123 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
66 TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
73061188 CCGAACTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCATGAACTTGTACAACTTTTGCAAA
131 CCGAACTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCATGAACTTGTACAACTTTTGCAAA
* *
73061253 TTTGCCTAGGTAAGTTCATATGGCTAAATTTAATGACTTGTTATGAAAATTCATGAATGCTATGG
196 TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
73061318 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAG--TGAATATTTGAATCGGA
261 TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
73061381 TTGAGTACTTT
326 TTGAGTACTTT
73061392 C
1 C
73061393 ATTCAGTGAC
Statistics
Matches: 660, Mismatches: 9, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
334 29 0.04
335 330 0.50
336 301 0.46
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (336 bp):
CTAAATTGTAAAAATTGTAAAATTTAGGGCAAAAGTGTAATTTTGGGGATAAAGGGTATAGACTG
TGAAGTAGAGTAAAATTGAAATGAATTCTAATAAATGAATGATTTTACAATTATAGATCAAAAAC
CCGAACTGAATCGTAGAAAAGAGAAAATAGCCGATTAGTCCATGAACTTGTACAACTTTTGCAAA
TTTGCCCAGGTAAGTTCATATGGCTAAATTTAATGAATTGTTATGAAAATTCATGAATGCTATGG
TATGGTATTGTATATGAATGTTATTAAGCTGAGATAATTGTGAAAGTATGAATATTTGAATCGGA
TTGAGTACTTT
Found at i:73061538 original size:47 final size:48
Alignment explanation
Indices: 73061447--73061601 Score: 181
Period size: 47 Copynumber: 3.3 Consensus size: 48
73061437 CATGGCAATA
* * * *
73061447 TGTGATATATGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGG
1 TGTGATATGTGATTTTCGTATAAGACCATATCTGGGATATGGCATCGG
*
73061495 TGTGATATGTG-TTTTCGTATAAGACCATATCTAGGATATGGCATCGG
1 TGTGATATGTGATTTTCGTATAAGACCATATCTGGGATATGGCATCGG
** * * *
73061542 TGAAATATGTGCTTCTT--TGTAAGACCATATCTGGGATTTGGCATCGG
1 TGTGATATGTGATT-TTCGTATAAGACCATATCTGGGATATGGCATCGG
*
73061589 TATGATATGTGAT
1 TGTGATATGTGAT
73061602 CCGTGTAAAA
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
47 77 0.85
48 12 0.13
49 2 0.02
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (48 bp):
TGTGATATGTGATTTTCGTATAAGACCATATCTGGGATATGGCATCGG
Found at i:73062977 original size:24 final size:24
Alignment explanation
Indices: 73062950--73063110 Score: 119
Period size: 24 Copynumber: 6.6 Consensus size: 24
73062940 CAATCTATTT
73062950 CGCACACATAGTGCTATTCAAATC
1 CGCACACATAGTGCTATTCAAATC
* * * * *
73062974 CGCACACTTAGTGCCATGCTAACC
1 CGCACACATAGTGCTATTCAAATC
* **
73062998 CACACACATAGTGCCT-TAGAAATC
1 CGCACACATAGTG-CTATTCAAATC
* * * *
73063022 CACACACTCGTATTGAC-ATTCAAATT
1 CGCACA--CATAGTG-CTATTCAAATC
* *
73063048 AGCACACATAGTGCTATTCAATTC
1 CGCACACATAGTGCTATTCAAATC
*
73063072 CGCACACATAGTGCCATTCAAAATC
1 CGCACACATAGTGCTATTC-AAATC
*
73063097 CGCACACTTAGTGC
1 CGCACACATAGTGC
73063111 CAATGTCATT
Statistics
Matches: 103, Mismatches: 28, Indels: 11
0.73 0.20 0.08
Matches are distributed among these distances:
23 1 0.01
24 69 0.67
25 18 0.17
26 15 0.15
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.24
Consensus pattern (24 bp):
CGCACACATAGTGCTATTCAAATC
Found at i:73068633 original size:40 final size:40
Alignment explanation
Indices: 73068588--73068754 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73068578 CGGAATATAA
73068588 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73068628 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73068668 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73068708 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73068747 CCGGATAT
1 CCGGATAT
73068755 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73076639 original size:40 final size:40
Alignment explanation
Indices: 73076594--73076761 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73076584 CGGAATATAA
73076594 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73076634 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73076674 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
73076714 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73076754 CCGGATAT
1 CCGGATAT
73076762 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73079699 original size:46 final size:44
Alignment explanation
Indices: 73079595--73079702 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
73079585 TGTCTTTGAC
** * * *
73079595 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
73079639 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
73079685 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
73079703 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:73085819 original size:46 final size:44
Alignment explanation
Indices: 73085715--73085822 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
73085705 TGTCTTTGAC
** * * *
73085715 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
73085759 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
73085805 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
73085823 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:73091422 original size:261 final size:260
Alignment explanation
Indices: 73090959--73091482 Score: 904
Period size: 261 Copynumber: 2.0 Consensus size: 260
73090949 ACGAGGTATG
* * *
73090959 GCACCGGTAAGAATCTGTAAAGCCCCTGTAGATAAGCTTAGAAGTATGGGGCTGAGGAATTCAGA
1 GCACCGGTAAGAATCAGTAAAGCCCCTGTAGATAAGCTCAGAAGTATGGGGCTGAGGAACTCAGA
* * * * *
73091024 GTTAAAGTTGATGATGACACTGAAAGAGCTGAGTTTTGGCTCGAAAATACTACACGGGTGCTAGA
66 GCTAAAGTTGATGATGACACTGAAAAAGCTGAGTTCTGGCTCAAAAATACTACACGAGTGCTAGA
*
73091089 TGATTTGTCATGCACACCCGAGGAATGTTTGAAGTGTGCTGTGTCCCTTTTGAAGGACACTGCAT
131 TGATTTGTCATGCACACCCGAGGAATGTTTGAAGTGTGATGTGTCCCTTTTGAAGGACACTGCAT
*
73091154 ACAATTGGTGGAAGACCGTATCCTCGGTAATGCCGAAAGAAAATATTACTTGGGATTTCTTCTAA
196 ACAATTGGTGGAAGACCGTATCCTCGGTAATGCCGAAAGAAAATATTACTTGGGATTTCTTCCAA
* *
73091219 GCACCGGTGAGATTCAGTAAAGCCCCTGTAGATAAGCTCAGAAAGTATGGGGCTGAGGAACTCAG
1 GCACCGGTAAGAATCAGTAAAGCCCCTGTAGATAAGCTCAG-AAGTATGGGGCTGAGGAACTCAG
73091284 AGCTAAAGTTGATGATGACACTGAAAAAGCTGAGTTCTGGCTCAAAAATACTACACGAGTGCTAG
65 AGCTAAAGTTGATGATGACACTGAAAAAGCTGAGTTCTGGCTCAAAAATACTACACGAGTGCTAG
*
73091349 ATGATTTGTCATGCACACCTGAGGAATGTTTGAAGTGTGATGTGTCCCTTTTGAAGGACACTGCA
130 ATGATTTGTCATGCACACCCGAGGAATGTTTGAAGTGTGATGTGTCCCTTTTGAAGGACACTGCA
* *
73091414 TACAATTGGTGGAAGACCGTATCTTCGGTAGTGCCGAAAGAAAATATTACTTGGGATTTCTTCCA
195 TACAATTGGTGGAAGACCGTATCCTCGGTAATGCCGAAAGAAAATATTACTTGGGATTTCTTCCA
73091479 A
260 A
73091480 GCA
1 GCA
73091483 GAGTTTAGGA
Statistics
Matches: 248, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
260 37 0.15
261 211 0.85
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (260 bp):
GCACCGGTAAGAATCAGTAAAGCCCCTGTAGATAAGCTCAGAAGTATGGGGCTGAGGAACTCAGA
GCTAAAGTTGATGATGACACTGAAAAAGCTGAGTTCTGGCTCAAAAATACTACACGAGTGCTAGA
TGATTTGTCATGCACACCCGAGGAATGTTTGAAGTGTGATGTGTCCCTTTTGAAGGACACTGCAT
ACAATTGGTGGAAGACCGTATCCTCGGTAATGCCGAAAGAAAATATTACTTGGGATTTCTTCCAA
Found at i:73092953 original size:40 final size:40
Alignment explanation
Indices: 73092909--73093156 Score: 252
Period size: 40 Copynumber: 6.2 Consensus size: 40
73092899 CGAAATACGA
*
73092909 CCGGATATAACCACAT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-TCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
73092949 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
73092989 CCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * *
73093029 CCAGATTTAACAACTCACACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * *
73093069 CCGGATGTAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
** ** * *
73093109 CCGGATATAATTAC-CAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACAACTC-GCACGAATGCCTTCGGGTCTTAGC
73093149 CCGGATAT
1 CCGGATAT
73093157 CATTCAATTG
Statistics
Matches: 176, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.02
40 170 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:73093139 original size:120 final size:120
Alignment explanation
Indices: 73092926--73093150 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 120
73092916 TAACCACATG
* *
73092926 CACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGCCC
1 CACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATGCCTTCGGGTATTAACCC
* * *
73092991 GGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCAGATTTAACAACTCA
66 GGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATTTAACAACTCA
* * *
73093046 CACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAAATGCCTTCGGGTATTAAC
** * *
73093109 CCGGATATAATTAC-CAGCATAAATGTCTTCGGGACTTAGCCC
64 CCGGATATAACAACTC-GCACAAATGCCTTCGGGACTTAGCCC
73093151 GGATATCATT
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
118 1 0.01
119 3 0.03
120 86 0.96
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATGCCTTCGGGTATTAACCC
GGATATAACAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATTTAACAACTCA
Found at i:73105669 original size:27 final size:27
Alignment explanation
Indices: 73105650--73105914 Score: 251
Period size: 27 Copynumber: 9.8 Consensus size: 27
73105640 ATTACCAAAG
* *
73105650 TACCCCCGATTTACAGAATTATCATTT
1 TACCCCCGATTTACAAAATTACCATTT
* *
73105677 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAAAATTACCATTT
* *
73105704 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAAAATTACCATTT
* **
73105731 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCCCGATTTACAAAATTACCATTT
* * *
73105758 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAAAATTACCATTT
** * ***
73105785 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCCCGATTTACAAAATTACCATTT
* * *
73105812 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCCCGATTTACAAAATTACCATTT
** * * *
73105839 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAAAATTACCATTT
** * *
73105866 TACCCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAAAATTACCATTT
*
73105893 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAAAATTAC
73105915 AGAAATACCC
Statistics
Matches: 211, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 211 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCCCGATTTACAAAATTACCATTT
Found at i:73105697 original size:54 final size:54
Alignment explanation
Indices: 73105650--73105914 Score: 350
Period size: 54 Copynumber: 4.9 Consensus size: 54
73105640 ATTACCAAAG
* * * * * * *
73105650 TACCCCCGATTTACAGAATTATCATTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
73105704 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
* * * *
73105758 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
* * * * *
73105812 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
* * **
73105866 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTAC
73105915 AGAAATACCC
Statistics
Matches: 185, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 185 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
Found at i:73105923 original size:27 final size:27
Alignment explanation
Indices: 73105550--73106115 Score: 163
Period size: 27 Copynumber: 20.9 Consensus size: 27
73105540 AATACTTTAG
* * *
73105550 TTTACTAAAATTACCGAAATACCCTTAGT
1 TTTAC-AAAATTACAGAAATACCC-TCGA
*
73105579 TTGTA-AAAA-TACTGAAATACCCTCGA
1 TT-TACAAAATTACAGAAATACCCTCGA
** * *
73105605 TTTGTAAAATTACTGAAATACCTTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ** * *
73105632 CTTGTAAAATTACCA-AAGTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* *** *
73105659 TTTACAGAATTATCA-TTTTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * ***
73105686 TTTACATAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ***
73105713 TTTACAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ***
73105740 TTTACAAAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * *** *
73105767 TTTATAAAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ** ***
73105794 TTTACAGAATTATTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
*** *
73105821 TTTACAAAATTATC-GTTTTACCGTCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * *** *
73105848 TTTATAGAATTACTA-TTTTACCCTTGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
* ***
73105875 TTTACAGAATTACTA-TTTTACCCTCGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
*
73105902 TTTACAAAATTACAGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
** *
73105929 TTTGTAAAATTACCA-AAATACCC-CTA
1 TTTACAAAATTA-CAGAAATACCCTCGA
** *
73105955 GTTTGTAAAATTACCA-AAATACCACT-GG
1 -TTTACAAAATTA-CAGAAATACC-CTCGA
*** * *
73105983 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
**
73106010 TTTGTAAAA-TACCA-AAATACCC-CTGA
1 TTTACAAAATTA-CAGAAATACCCTC-GA
* * *
73106036 TTTACAAAGTTACAAAAATACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * * *
73106063 CTTT-CTAAAAATTATAGAAATACCATTGG
1 -TTTAC--AAAATTACAGAAATACCCTCGA
*
73106092 TTTACAAAATTACTGAAATACCCT
1 TTTACAAAATTACAGAAATACCCT
73106116 TGGTTTGTAG
Statistics
Matches: 444, Mismatches: 69, Indels: 50
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.00
26 35 0.08
27 371 0.84
28 14 0.03
29 20 0.05
30 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCCTCGA
Found at i:73105940 original size:81 final size:80
Alignment explanation
Indices: 73105650--73105943 Score: 363
Period size: 81 Copynumber: 3.6 Consensus size: 80
73105640 ATTACCAAAG
* * * * * * * *
73105650 TACCCCCGATTTACAGAATTATCATTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTA-CGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
* *
73105715 TACAAAATTACCGTTT
65 TACAGAATTACTGTTT
*
73105731 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTAC-GTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
*
73105796 TACAGAATTATTGTTT
65 TACAGAATTACTGTTT
* * *
73105812 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTA-CGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
*
73105877 TACAGAATTACTATTT
65 TACAGAATTACTGTTT
*** * *
73105893 TACCCTCGATTTACAAAATTACAGAAATACCCTCAATTTGTAAAATTACCA
1 TACCCTCGATTTACAAAATTAC-GTTTTACCCTCGATTTATAAAATTACCA
73105944 AAATACCCCT
Statistics
Matches: 186, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
80 2 0.01
81 183 0.98
82 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTT
ACAGAATTACTGTTT
Found at i:73105951 original size:81 final size:80
Alignment explanation
Indices: 73105704--73106041 Score: 252
Period size: 81 Copynumber: 4.2 Consensus size: 80
73105694 ATTACCGTTT
* * * *** *
73105704 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-GAAATACCCTCAATT
****
73105769 TATAAAATTACCGTTT
65 TATAAAATTACCAAAA
*** *** * *
73105785 TACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCGTCGATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTA-CGAAATACCCTCAATT
* * ***
73105850 TATAGAATTACTATTT
65 TATAAAATTACCAAAA
*
73105866 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACAGAAATACCCTCAATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-GAAATACCCTCAATT
*
73105931 TGTAAAATTACCAAAA
65 TATAAAATTACCAAAA
* * *** * ***
73105947 TACCCCTAGTTTGTA-A-AATTACCAAAATACCACT-GGTTTGTGAAATTACCGAAATACCCTCA
1 TA-CCCTTGATT-TACAGAATTACCATTTTACC-CTCGATTTACAAAATTA-CGAAATACCCTCA
*
73106009 ATTTGTAAAA-TACCAAAA
62 ATTTATAAAATTACCAAAA
*
73106027 TACCCCTGATTTACA
1 TACCCTTGATTTACA
73106042 AAGTTACAAA
Statistics
Matches: 216, Mismatches: 34, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
78 2 0.01
79 7 0.03
80 11 0.05
81 182 0.84
82 12 0.06
83 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.36
Consensus pattern (80 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACGAAATACCCTCAATTT
ATAAAATTACCAAAA
Found at i:73106055 original size:53 final size:55
Alignment explanation
Indices: 73105935--73106059 Score: 150
Period size: 53 Copynumber: 2.3 Consensus size: 55
73105925 TCAATTTGTA
* * **
73105935 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTGAC
* *
73105989 AAATTACCGAAATACCCTC-AATTTGTAAAA-TACCAAAATACCCCTGATTT-AC
1 AAATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTGAC
*
73106041 AAAGTTACAAAAATACCCT
1 AAA-TTACCAAAATACCCT
73106060 TGACTTTCTA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
52 3 0.05
53 31 0.51
54 26 0.43
55 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.27
Consensus pattern (55 bp):
AAATTACCAAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTGATTTGAC
Found at i:73106205 original size:27 final size:27
Alignment explanation
Indices: 73106174--73106266 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
73106164 TACCCCTATT
*
73106174 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
73106201 GGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
*
73106228 AGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
73106255 TGGTAAAATGAC
1 AGGTAAAATGAC
73106267 GAATATGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:73107526 original size:9 final size:9
Alignment explanation
Indices: 73107514--73107570 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73107504 TTTGATAAAC
73107514 ATGATATGT
1 ATGATATGT
*
73107523 ATGATATGCAC
1 ATGATATG--T
*
73107534 ATGACATGT
1 ATGATATGT
*
73107543 ATGATATGCAC
1 ATGATATG--T
73107554 ATGATATGT
1 ATGATATGT
73107563 ATGATATG
1 ATGATATG
73107571 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:73107537 original size:20 final size:20
Alignment explanation
Indices: 73107512--73107574 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
73107502 ATTTTGATAA
73107512 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
73107532 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73107552 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73107572 ACA
1 ACA
73107575 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73107698 original size:47 final size:47
Alignment explanation
Indices: 73107629--73107795 Score: 203
Period size: 47 Copynumber: 3.5 Consensus size: 47
73107619 GAGGAAGTGA
* *
73107629 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGTCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * **
73107675 CAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
73107723 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
73107771 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
73107796 TGATAAAGCA
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
47 62 0.60
48 29 0.28
49 12 0.12
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:73107745 original size:71 final size:71
Alignment explanation
Indices: 73107629--73107780 Score: 232
Period size: 71 Copynumber: 2.1 Consensus size: 71
73107619 GAGGAAGTGA
** * * *
73107629 AAAAGGGCTTATGCCCCAGTTATTAAAGGTCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
73107694 GTTATC
66 GTTATC
*
73107700 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
73107765 GTTATT
66 GTTATC
73107771 AAAAGAGGCT
1 AAAAG-GGCT
73107781 AGGCCTCCAG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 69 0.95
72 4 0.05
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:73107790 original size:25 final size:24
Alignment explanation
Indices: 73107629--73107794 Score: 212
Period size: 24 Copynumber: 7.0 Consensus size: 24
73107619 GAGGAAGTGA
73107629 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
73107653 -AAAGGTCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
73107676 AAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
**
73107700 AAAAGGGCTTACACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73107724 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
*
73107747 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73107771 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
73107795 ATGATAAAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 41 0.33
24 71 0.58
25 11 0.09
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73108022 original size:31 final size:31
Alignment explanation
Indices: 73107987--73108050 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73107977 CGTTTACAGT
*
73107987 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
73108018 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
73108049 AA
1 AA
73108051 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:73109544 original size:26 final size:26
Alignment explanation
Indices: 73109478--73109588 Score: 165
Period size: 26 Copynumber: 4.3 Consensus size: 26
73109468 CTGGAGGCCT
*
73109478 AGCCTCTTTT-AAT-AACTGGGGCAAA
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
73109503 AGCCC-TTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
73109528 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
73109554 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
73109580 AGCCCTTTT
1 AGCCCTTTT
73109589 GCACTTCCAC
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
23 3 0.04
24 2 0.03
25 20 0.26
26 53 0.68
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:73109663 original size:20 final size:20
Alignment explanation
Indices: 73109638--73109714 Score: 127
Period size: 20 Copynumber: 3.9 Consensus size: 20
73109628 TTATGAAGAC
73109638 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
73109658 ATCATGTGCGTATCGTACAT
1 ATCATGTGCATATCATACAT
73109678 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73109698 ATCATGTGCATGTCATA
1 ATCATGTGCATATCATA
73109715 TCAATATTGT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73109671 original size:11 final size:11
Alignment explanation
Indices: 73109638--73109713 Score: 65
Period size: 11 Copynumber: 7.5 Consensus size: 11
73109628 TTATGAAGAC
73109638 ATCATGTGCAT
1 ATCATGTGCAT
*
73109649 ATCA--TACAT
1 ATCATGTGCAT
*
73109658 ATCATGTGCGT
1 ATCATGTGCAT
*
73109669 ATC--GTACAT
1 ATCATGTGCAT
73109678 ATCATGTGCAT
1 ATCATGTGCAT
*
73109689 ATCA--TACAT
1 ATCATGTGCAT
73109698 ATCATGTGCAT
1 ATCATGTGCAT
*
73109709 GTCAT
1 ATCAT
73109714 ATCAATATTG
Statistics
Matches: 50, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
9 23 0.46
11 27 0.54
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73109789 original size:25 final size:25
Alignment explanation
Indices: 73109761--73109808 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73109751 ATAATTAAAC
* * *
73109761 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
73109786 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
73109809 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:73114314 original size:40 final size:39
Alignment explanation
Indices: 73114269--73114476 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
73114259 CGGAATACAA
*
73114269 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73114309 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73114349 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
73114389 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
73114429 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73114469 CCGGATAT
1 CCGGATAT
73114477 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73114409 original size:80 final size:80
Alignment explanation
Indices: 73114269--73114475 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
73114259 CGGAATACAA
* * *
73114269 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
73114333 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
73114349 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
73114413 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
73114429 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
73114476 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:73122360 original size:40 final size:39
Alignment explanation
Indices: 73122315--73122522 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
73122305 CGGAATACAA
*
73122315 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73122355 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73122395 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
73122435 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
73122475 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73122515 CCGGATAT
1 CCGGATAT
73122523 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73122455 original size:80 final size:80
Alignment explanation
Indices: 73122315--73122521 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
73122305 CGGAATACAA
* * *
73122315 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
73122379 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
73122395 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
73122459 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
73122475 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
73122522 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:73126673 original size:40 final size:40
Alignment explanation
Indices: 73126629--73126757 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
73126619 TGCTGGAAAT
* * *
73126629 TATATCCGGGTTAAGACCCGAAGGCAATCGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTGAC
* * *
73126669 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTGAC
* * * *
73126709 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGA-GTGAC
73126749 TATATCCGG
1 TATATCCGG
73126758 TTATATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 77 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTGAC
Found at i:73134657 original size:40 final size:40
Alignment explanation
Indices: 73134591--73134757 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73134581 AAATTGAATG
* * *
73134591 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
73134630 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
73134670 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73134710 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73134750 ATATCCGG
1 ATATCCGG
73134758 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73141065 original size:40 final size:40
Alignment explanation
Indices: 73141020--73141187 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73141010 CGGAATATAA
73141020 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73141060 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73141100 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
73141140 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73141180 CCGGATAT
1 CCGGATAT
73141188 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73146003 original size:24 final size:24
Alignment explanation
Indices: 73145976--73146136 Score: 130
Period size: 24 Copynumber: 6.6 Consensus size: 24
73145966 CAATCGATTT
73145976 CGCACACATAGTGCTATTCAAATC
1 CGCACACATAGTGCTATTCAAATC
* * * *
73146000 CGCACACTTAGTGGC-ATGCTAACC
1 CGCACACATAGT-GCTATTCAAATC
**
73146024 CGCACACATAGTGCCT-TAGAAATC
1 CGCACACATAGTG-CTATTCAAATC
* * *
73146048 CACACACTCGTATTGAC-ATTCAAATC
1 CGCACA--CATAGTG-CTATTCAAATC
* *
73146074 AGCACACATAGTGCTATTCAATTC
1 CGCACACATAGTGCTATTCAAATC
*
73146098 CGCACACATAGTGCCATTCAAAATC
1 CGCACACATAGTGCTATTC-AAATC
*
73146123 CGCACACTTAGTGC
1 CGCACACATAGTGC
73146137 CAATGTCATT
Statistics
Matches: 105, Mismatches: 24, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
23 2 0.02
24 68 0.65
25 19 0.18
26 16 0.15
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (24 bp):
CGCACACATAGTGCTATTCAAATC
Found at i:73149600 original size:13 final size:13
Alignment explanation
Indices: 73149582--73149619 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
73149572 GCCTGGCACA
73149582 TGGGCGTGTGACT
1 TGGGCGTGTGACT
73149595 TGGGCGTGTGACT
1 TGGGCGTGTGACT
*
73149608 TGGCCGTGTGAC
1 TGGGCGTGTGAC
73149620 CCTACTTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.08, C:0.18, G:0.45, T:0.29
Consensus pattern (13 bp):
TGGGCGTGTGACT
Found at i:73158482 original size:46 final size:45
Alignment explanation
Indices: 73158432--73158607 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
73158422 TGGTTGAGCA
73158432 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
73158478 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
73158525 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
73158571 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73158608 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 66 0.61
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73158588 original size:93 final size:93
Alignment explanation
Indices: 73158429--73158599 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
73158419 GGATGGTTGA
*
73158429 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
73158494 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
73158522 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
73158586 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
73158600 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:73161032 original size:2 final size:2
Alignment explanation
Indices: 73161025--73161060 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
73161015 AGCAAAGATT
73161025 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
73161061 AGTGAACATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:73162082 original size:21 final size:21
Alignment explanation
Indices: 73162056--73162095 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
73162046 ACCATACAAG
73162056 TATTGTGTT-GATTAATTAAAA
1 TATTGT-TTAGATTAATTAAAA
73162077 TATTGTTTAGATTAATTAA
1 TATTGTTTAGATTAATTAA
73162096 TTAATTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (21 bp):
TATTGTTTAGATTAATTAAAA
Found at i:73165735 original size:31 final size:31
Alignment explanation
Indices: 73165697--73165760 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
73165687 CCTTTTCATA
73165697 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
73165728 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
73165759 TT
1 TT
73165761 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:73166003 original size:24 final size:24
Alignment explanation
Indices: 73165952--73166094 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
73165942 GCTTTATCAT
*
73165952 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
73165977 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
73166001 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
73166024 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
73166048 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73166072 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73166095 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73166031 original size:47 final size:48
Alignment explanation
Indices: 73165952--73166093 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
73165942 GCTTTATCAT
* *
73165952 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
73166001 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
73166048 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
73166094 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:73166052 original size:71 final size:72
Alignment explanation
Indices: 73165951--73166094 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
73165941 TGCTTTATCA
*
73165951 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
73166016 GCCCTTT
66 GCCCTTT
* * **
73166023 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
73166086 AGCCCTTT
65 AGCCCTTT
73166094 T
1 T
73166095 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:73166170 original size:20 final size:20
Alignment explanation
Indices: 73166145--73166204 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
73166135 TATGATTACC
73166145 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
73166165 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
73166185 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
73166205 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:73166175 original size:11 final size:11
Alignment explanation
Indices: 73166145--73166199 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
73166135 TATGATTACC
73166145 TCATGTGCATA
1 TCATGTGCATA
*
73166156 TCA--TACATA
1 TCATGTGCATA
73166165 TCATGTGCATA
1 TCATGTGCATA
* *
73166176 TCA--TACATT
1 TCATGTGCATA
73166185 TCATGTGCATA
1 TCATGTGCATA
73166196 TCAT
1 TCAT
73166200 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:73166279 original size:25 final size:25
Alignment explanation
Indices: 73166247--73166294 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73166237 ATACATAAAC
* * *
73166247 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73166272 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73166295 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73171856 original size:92 final size:93
Alignment explanation
Indices: 73171745--73171915 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73171735 CGCCCATAAG
*
73171745 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCACAT-CATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
73171809 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
73171837 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
73171902 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73171916 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 36 0.48
93 39 0.52
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73171931 original size:46 final size:45
Alignment explanation
Indices: 73171741--73171920 Score: 165
Period size: 45 Copynumber: 3.9 Consensus size: 45
73171731 AACCCGCCCA
* *
73171741 TAAGCGAACTCGGACTCAACTCAACGAGCTCGG--GCATTC-ACATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC--TCAACATC
73171785 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACATC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATC
* * *** *
73171834 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT-C
73171878 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAAC
73171921 CATCCTAGTG
Statistics
Matches: 109, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
43 3 0.03
44 2 0.02
45 33 0.30
46 31 0.28
47 32 0.29
48 3 0.03
49 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATC
Found at i:73178093 original size:40 final size:40
Alignment explanation
Indices: 73178048--73178214 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
73178038 CGGAATATAA
73178048 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
73178088 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
73178127 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73178167 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
73178207 CCGGATAT
1 CCGGATAT
73178215 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.32
40 68 0.66
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73186081 original size:39 final size:39
Alignment explanation
Indices: 73186037--73186165 Score: 143
Period size: 40 Copynumber: 3.3 Consensus size: 39
73186027 CGGAATATAA
73186037 CCGGATATAACACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
73186076 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73186116 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
73186156 CCGGATATAA
1 CCGGATATAA
73186166 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
39 10 0.14
40 62 0.86
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73186180 original size:40 final size:40
Alignment explanation
Indices: 73186052--73186202 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
73186042 TATAACACGT
* * *
73186052 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
73186092 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73186132 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
73186172 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73186203 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:73186186 original size:80 final size:79
Alignment explanation
Indices: 73186052--73186200 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
73186042 TATAACACGT
* *
73186052 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
73186117 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
73186132 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
73186195 CCGGAT
64 CCGGAT
73186201 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:73190619 original size:93 final size:93
Alignment explanation
Indices: 73190507--73190678 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73190497 CGCCCATAAG
* *
73190507 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73190572 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73190600 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73190665 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73190679 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73190675 original size:46 final size:46
Alignment explanation
Indices: 73190500--73190675 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73190490 TGTAACCCGC
* * *
73190500 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73190546 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73190596 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73190639 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73190676 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73195359 original size:30 final size:31
Alignment explanation
Indices: 73195323--73195385 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
73195313 CCTTTTCATA
73195323 TTTCATA-TTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
73195353 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
73195384 TT
1 TT
73195386 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:73195628 original size:24 final size:24
Alignment explanation
Indices: 73195577--73195719 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
73195567 GCTTTATCAT
*
73195577 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
73195602 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
73195626 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
73195649 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
73195673 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73195697 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73195720 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73195656 original size:47 final size:48
Alignment explanation
Indices: 73195577--73195718 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
73195567 GCTTTATCAT
* *
73195577 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
73195626 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
73195673 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
73195719 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:73195677 original size:71 final size:72
Alignment explanation
Indices: 73195576--73195719 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
73195566 TGCTTTATCA
*
73195576 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
73195641 GCCCTTT
66 GCCCTTT
* * **
73195648 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
73195711 AGCCCTTT
65 AGCCCTTT
73195719 T
1 T
73195720 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:73195795 original size:20 final size:20
Alignment explanation
Indices: 73195770--73195829 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
73195760 TATGATTACC
73195770 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
73195790 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
73195810 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
73195830 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:73195800 original size:11 final size:11
Alignment explanation
Indices: 73195770--73195824 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
73195760 TATGATTACC
73195770 TCATGTGCATA
1 TCATGTGCATA
*
73195781 TCA--TACATA
1 TCATGTGCATA
73195790 TCATGTGCATA
1 TCATGTGCATA
* *
73195801 TCA--TACATT
1 TCATGTGCATA
73195810 TCATGTGCATA
1 TCATGTGCATA
73195821 TCAT
1 TCAT
73195825 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:73195904 original size:25 final size:25
Alignment explanation
Indices: 73195872--73195919 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73195862 ATACATAAAC
* * *
73195872 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
73195897 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
73195920 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:73203802 original size:46 final size:47
Alignment explanation
Indices: 73203633--73203803 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 47
73203623 ATTGTGAGCT
* * * *
73203633 AGTGTAAGACATGTCTAGGACATGCATCGACCAT--ATTATGAG-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-GCATCGA-GACGAGTAGCC
* * *
73203679 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAGACGAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAGTAGCC
*
73203727 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-G-GTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGT-AGCC
*
73203773 AGTGTAAGACATGTCTGGGACATGTATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
73203804 TACGAGATGT
Statistics
Matches: 107, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
44 2 0.02
45 1 0.01
46 54 0.50
47 28 0.26
48 21 0.20
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGTAGCC
Found at i:73210660 original size:148 final size:148
Alignment explanation
Indices: 73210417--73210709 Score: 514
Period size: 148 Copynumber: 2.0 Consensus size: 148
73210407 TATGATGTTA
*
73210417 AAAATATACCTGACAAAGCCCGATTAATGAAAATGCCCGATAAAGGATAAATGAGAAAAATGTTA
1 AAAATACACCTGACAAAGCCCGATTAATGAAAATGCCCGATAAAGGATAAATGAGAAAAATGTTA
* * *
73210482 CTTTTATGCTTGGAACGAATGTGGAGTGTGATCATTTAAATTATATGAATGTCAAATATGTATGA
66 CTTTTATGCTTGAAACGAATGTGGAATGTGATCATTTAAATTATATGAATGTCAAAGATGTATGA
73210547 AATAATTACGTGCCGTTG
131 AATAATTACGTGCCGTTG
* *
73210565 AAAATACACCTGACAAAGCCCGATTAATGAAAATTCCTGATAAAGGATAAATGAGAAAAATGTTA
1 AAAATACACCTGACAAAGCCCGATTAATGAAAATGCCCGATAAAGGATAAATGAGAAAAATGTTA
*
73210630 CTTTTATGCTTGAAACGAATGTGGAATGTGATCATTTAAATTATATGAATGTCATAGATGTATGA
66 CTTTTATGCTTGAAACGAATGTGGAATGTGATCATTTAAATTATATGAATGTCAAAGATGTATGA
*
73210695 AATAATTATGTGCCG
131 AATAATTACGTGCCG
73210710 GGAAATGCTT
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
148 137 1.00
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (148 bp):
AAAATACACCTGACAAAGCCCGATTAATGAAAATGCCCGATAAAGGATAAATGAGAAAAATGTTA
CTTTTATGCTTGAAACGAATGTGGAATGTGATCATTTAAATTATATGAATGTCAAAGATGTATGA
AATAATTACGTGCCGTTG
Found at i:73213081 original size:17 final size:18
Alignment explanation
Indices: 73213040--73213081 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
73213030 CAAATTAGCC
73213040 TCAAAATTCATACCATTA
1 TCAAAATTCATACCATTA
*
73213058 CCAAAATCTCATA-C-TTA
1 TCAAAAT-TCATACCATTA
73213075 TCAAAAT
1 TCAAAAT
73213082 GAGTCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 9 0.43
18 7 0.33
19 5 0.24
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (18 bp):
TCAAAATTCATACCATTA
Found at i:73214073 original size:43 final size:43
Alignment explanation
Indices: 73214026--73214151 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 43
73214016 TATCCCAAAT
*
73214026 ATGGTCTTACATGTTATCACATATCGATGCCTCTCTCCCAGAC
1 ATGGTCTTACATGTTATCACATATCGATGCCTCTGTCCCAGAC
** * ** *
73214069 ATGGTCTTACATGAAATCTCATAT-GAATGCCAATGTCTCAGAC
1 ATGGTCTTACATGTTATCACATATCG-ATGCCTCTGTCCCAGAC
*
73214112 ATGGTCTTACATGTTATCACATATCGATGTCTCTGTCCCA
1 ATGGTCTTACATGTTATCACATATCGATGCCTCTGTCCCA
73214152 AATAGGGTCG
Statistics
Matches: 67, Mismatches: 14, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 1 0.01
43 65 0.97
44 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (43 bp):
ATGGTCTTACATGTTATCACATATCGATGCCTCTGTCCCAGAC
Found at i:73220950 original size:17 final size:18
Alignment explanation
Indices: 73220909--73220950 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
73220899 CAAATTAGCC
73220909 TCAAAATTCATACCATTA
1 TCAAAATTCATACCATTA
*
73220927 CCAAAATCTCATA-C-TTA
1 TCAAAAT-TCATACCATTA
73220944 TCAAAAT
1 TCAAAAT
73220951 GAGTCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 9 0.43
18 7 0.33
19 5 0.24
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (18 bp):
TCAAAATTCATACCATTA
Found at i:73238207 original size:55 final size:57
Alignment explanation
Indices: 73238077--73238216 Score: 153
Period size: 55 Copynumber: 2.5 Consensus size: 57
73238067 CTCATTACAG
* * * *
73238077 AAAA-GATTTAGCCTGGACAGGTAATCCTGATATAAGTCCTCTCGAGCATATGTTATG
1 AAAAGGATTTAGCCTGGACAGGTAATCC-GAAATAAGTCCTCTCAAGCATATGTCATA
* ** *
73238134 GATTGGATTTAGCTTGGACAGGTAATCC-AAATCAAGTCCT-T-AAGCATATGTCATA
1 AAAAGGATTTAGCCTGGACAGGTAATCCGAAAT-AAGTCCTCTCAAGCATATGTCATA
*
73238189 AAAAGGATTTAGCCTGGACTGGTAATCC
1 AAAAGGATTTAGCCTGGACAGGTAATCC
73238217 TATTGTATAC
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
55 34 0.50
56 4 0.06
57 8 0.12
58 22 0.32
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (57 bp):
AAAAGGATTTAGCCTGGACAGGTAATCCGAAATAAGTCCTCTCAAGCATATGTCATA
Found at i:73240153 original size:26 final size:26
Alignment explanation
Indices: 73240107--73240156 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
73240097 TTATTTAATA
* *
73240107 TTAAATTTAATTTAATGTTTATCTAC
1 TTAAATTTAATCTAATATTTATCTAC
*
73240133 TTAAATTTAATCTCATATTTATCT
1 TTAAATTTAATCTAATATTTATCT
73240157 TGATAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (26 bp):
TTAAATTTAATCTAATATTTATCTAC
Found at i:73245129 original size:19 final size:19
Alignment explanation
Indices: 73245105--73245143 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73245095 ATCATATTAT
73245105 AGTAATAATAA-ATAAATAA
1 AGTAAT-ATAAGATAAATAA
*
73245124 AGTAATTTAAGATAAATAA
1 AGTAATATAAGATAAATAA
73245143 A
1 A
73245144 AAATGGAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (19 bp):
AGTAATATAAGATAAATAA
Found at i:73245365 original size:23 final size:23
Alignment explanation
Indices: 73245338--73245390 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
73245328 AATGAAGAGG
73245338 TAATAAATAA-ATAG-ATAAATAGA
1 TAATAAATAACATAGAATAAA-A-A
73245361 TAAT-AATAACATAGTAATAAAAA
1 TAATAAATAACATAG-AATAAAAA
73245384 TAATAAA
1 TAATAAA
73245391 AGCACGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 5 0.19
23 13 0.50
24 3 0.12
25 5 0.19
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (23 bp):
TAATAAATAACATAGAATAAAAA
Found at i:73245480 original size:4 final size:4
Alignment explanation
Indices: 73245471--73245605 Score: 53
Period size: 4 Copynumber: 33.5 Consensus size: 4
73245461 ATGAAGGAAT
* * * * *
73245471 AATA AATA AATG AATAA AATG ATTAA AATA AA-A AATA AATA AGTG AAT-
1 AATA AATA AATA AAT-A AATA AAT-A AATA AATA AATA AATA AATA AATA
* * * * * * *
73245519 AATA TATA AATA GATA AGTA TATG AGTA AATA AATG AATAA AATA AA-A
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT-A AATA AATA
* * * *
73245567 GGACT- AATG AATA AATA AATA AGTA AATA AATG AATA AA
1 --AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
73245606 AGAATAAAAA
Statistics
Matches: 92, Mismatches: 30, Indels: 18
0.66 0.21 0.13
Matches are distributed among these distances:
3 9 0.10
4 74 0.80
5 9 0.10
ACGTcount: A:0.64, C:0.01, G:0.10, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:73246787 original size:20 final size:22
Alignment explanation
Indices: 73246747--73246797 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 22
73246737 TAGGGTTTTC
73246747 ATTTTATTTTGGGCCTTGTAAT
1 ATTTTATTTTGGGCCTTGTAAT
*
73246769 ATTTTA-TTTGGG-TTTGTAAT
1 ATTTTATTTTGGGCCTTGTAAT
*
73246789 -TTTTCTTTT
1 ATTTTATTTT
73246798 ATTTACTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 4 0.15
20 10 0.38
21 6 0.23
22 6 0.23
ACGTcount: A:0.16, C:0.06, G:0.16, T:0.63
Consensus pattern (22 bp):
ATTTTATTTTGGGCCTTGTAAT
Found at i:73247077 original size:44 final size:43
Alignment explanation
Indices: 73246968--73247472 Score: 231
Period size: 44 Copynumber: 11.3 Consensus size: 43
73246958 ACATTTTAAC
* * * **
73246968 CCACTGCAACTTTAGGGGTGTAAGAAC-TGTAGTTTTAATCTATT
1 CCACTGCAACTTTAGGAG-ATAAG-ACTTGTAGCTTTAATCTGCT
* * *
73247012 CCACTGTAGCTTCAAGGAGATAAGACTTGTAGCTTTAATCTGCT
1 CCACTGCAACTT-TAGGAGATAAGACTTGTAGCTTTAATCTGCT
* * *
73247056 CCACTGCCACTTTAGGAAGATAAGATTTGCTATGGTAGATTTAATCCGAC-
1 CCACTGCAACTTTAGG-AGATAAGA----CT-T-GTAGCTTTAATCTG-CT
* * * * *
73247106 CTACTACAACTTTA-GAGGTATAGAATT-TAG-TTTAAATCTACT
1 CCACTGCAACTTTAGGAGATA-AGACTTGTAGCTTT-AATCTGCT
* * *
73247148 CCACTACAACTTCAAGGATATAAGACTTGTAGCTTTAATCTGCT
1 CCACTGCAACTT-TAGGAGATAAGACTTGTAGCTTTAATCTGCT
* * *
73247192 CCACTGCGACTTCAAGGAGATAAGATTTTCTATGGTAGTTTTAAT-TCGAC-
1 CCACTGCAACTT-TAGGAGATAAGA----CT-T-GTAGCTTTAATCT-G-CT
* * * *
73247242 CTACTGCAACTTTA-GAGGTATAGGA-TT-TAGTTTTAATCTACT
1 CCACTGCAACTTTAGGA-G-ATAAGACTTGTAGCTTTAATCTGCT
* *
73247284 TCACTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATCTGCT
1 CCACTGCAACTTTA-GGAGATAAGACTTGTAGCTTTAATCTGCT
* * * * * *
73247328 CCACTGCAAGTTCAGGGAGATGAGATTTGTAGCTTCAACCTGCT
1 CCACTGCAACTTTA-GGAGATAAGACTTGTAGCTTTAATCTGCT
* * * * * * *
73247372 CTACTACAACCTTAGAAAGATAAGA-TTCACTATCTATAATCTGCT
1 CCACTGCAACTTTAG-GAGATAAGACTT--GTAGCTTTAATCTGCT
** * * * *
73247417 CCTTTGCAACTTTAGGGAGATAAGATTTCTGGCTTTAATTTGCT
1 CCACTGCAACTTTA-GGAGATAAGACTTGTAGCTTTAATCTGCT
73247461 CCACTGCAACTT
1 CCACTGCAACTT
73247473 CAATGAGATA
Statistics
Matches: 349, Mismatches: 74, Indels: 76
0.70 0.15 0.15
Matches are distributed among these distances:
41 5 0.01
42 45 0.13
43 18 0.05
44 171 0.49
45 37 0.11
46 3 0.01
48 10 0.03
49 9 0.03
50 49 0.14
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (43 bp):
CCACTGCAACTTTAGGAGATAAGACTTGTAGCTTTAATCTGCT
Found at i:73247172 original size:136 final size:136
Alignment explanation
Indices: 73246974--73247356 Score: 516
Period size: 136 Copynumber: 2.8 Consensus size: 136
73246964 TAACCCACTG
* * * * * *
73246974 CAACTTTAGGGGTGTAAGAACTGTAGTTTTAATCTATTCCACTGTAGCTTCAAGGAGATAAGACT
1 CAACTTTAGAGGTAT-AGAA-TTTAGTTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGACT
*
73247039 TGTAGCTTTAATCTGCTCCACTGCCACTT-TAGGAAGATAAGATTTGCTATGGTAGATTTAATCC
64 TGTAGCTTTAATCTGCTCCACTGCCACTTCAAGG-AGATAAGATTTGCTATGGTAGATTTAATCC
73247103 GACCTACTA
128 GACCTACTA
* * *
73247112 CAACTTTAGAGGTATAGAATTTAGTTTAAATCTACTCCACTACAACTTCAAGGATATAAGACTTG
1 CAACTTTAGAGGTATAGAATTTAGTTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGACTTG
* * * *
73247177 TAGCTTTAATCTGCTCCACTGCGACTTCAAGGAGATAAGATTTTCTATGGTAGTTTTAATTCGAC
66 TAGCTTTAATCTGCTCCACTGCCACTTCAAGGAGATAAGATTTGCTATGGTAGATTTAATCCGAC
*
73247242 CTACTG
131 CTACTA
* * * *
73247248 CAACTTTAGAGGTATAGGATTTAGTTTTAATCTACTTCACTGCAACTTTAGGGAGATAAGACTTG
1 CAACTTTAGAGGTATAGAATTTAGTTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGACTTG
* * * * *
73247313 TAACTTTAATCTGCTCCACTGCAAGTTCAGGGAGATGAGATTTG
66 TAGCTTTAATCTGCTCCACTGCCACTTCAAGGAGATAAGATTTG
73247357 TAGCTTCAAC
Statistics
Matches: 216, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
136 196 0.91
137 7 0.03
138 13 0.06
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (136 bp):
CAACTTTAGAGGTATAGAATTTAGTTTTAATCTACTCCACTGCAACTTCAAGGAGATAAGACTTG
TAGCTTTAATCTGCTCCACTGCCACTTCAAGGAGATAAGATTTGCTATGGTAGATTTAATCCGAC
CTACTA
Found at i:73249313 original size:20 final size:20
Alignment explanation
Indices: 73249288--73249327 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
73249278 TCTCTTGGCA
73249288 TAACTGATACAATCCCCTTC
1 TAACTGATACAATCCCCTTC
73249308 TAACTGATACAATCCCCTTC
1 TAACTGATACAATCCCCTTC
73249328 CATGGTGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.35, G:0.05, T:0.30
Consensus pattern (20 bp):
TAACTGATACAATCCCCTTC
Found at i:73252055 original size:24 final size:23
Alignment explanation
Indices: 73252023--73252131 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
73252013 ACCAAACGTT
* **
73252023 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
73252047 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
73252071 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
73252095 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
73252119 GCACACATAGTGC
1 GCACACATAGTGC
73252132 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:73252097 original size:48 final size:48
Alignment explanation
Indices: 73252023--73252131 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
73252013 ACCAAACGTT
* **
73252023 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
73252071 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
73252119 GCACACATAGTGC
1 GCACACATAGTGC
73252132 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:73260844 original size:40 final size:40
Alignment explanation
Indices: 73260787--73260894 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 40
73260777 AAATGAAAAA
*
73260787 TCGGCTATTTATGGCACTTAGTGTGCGATTCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* ** *
73260827 TTGGCTATATATGGCACTTAGTGTGTTATTCGAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* * *
73260867 TCGGCTATGTACGACACTTAGTGTGCGA
1 TCGGCTATATATGGCACTTAGTGTGCGA
73260895 GATACCAAGT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
Found at i:73261016 original size:28 final size:28
Alignment explanation
Indices: 73260881--73261016 Score: 191
Period size: 28 Copynumber: 4.9 Consensus size: 28
73260871 CTATGTACGA
* *
73260881 CACTTAGTGTGCGAGATACCAAGTGTGG
1 CACTTAGTGTGCGAGATATCGAGTGTGG
*
73260909 CACTTAGTGTGAGAGATATCGAGTGTGG
1 CACTTAGTGTGCGAGATATCGAGTGTGG
* *
73260937 CACTTAGTGTGTGAGATATAGAGTGTGG
1 CACTTAGTGTGCGAGATATCGAGTGTGG
*
73260965 CACTTAGTGTGCAAGATATCGAGTGTGG
1 CACTTAGTGTGCGAGATATCGAGTGTGG
* * *
73260993 TACTTAGTGTGTGAGATATTGAGT
1 CACTTAGTGTGCGAGATATCGAGT
73261017 ATTCAACAGC
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 96 1.00
ACGTcount: A:0.25, C:0.11, G:0.33, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATCGAGTGTGG
Found at i:73262477 original size:17 final size:18
Alignment explanation
Indices: 73262455--73262489 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73262445 AATTTGGGAT
73262455 GTGTAGG-CCACACGGGC
1 GTGTAGGCCCACACGGGC
73262472 GTGTAGGCCCACACGGGC
1 GTGTAGGCCCACACGGGC
73262490 AGGCCATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.31, G:0.40, T:0.11
Consensus pattern (18 bp):
GTGTAGGCCCACACGGGC
Found at i:73266543 original size:30 final size:29
Alignment explanation
Indices: 73266498--73266556 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
73266488 ATTTAATACG
*
73266498 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTT-CCCCTA
* *
73266528 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTCCCCTA
73266557 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (29 bp):
AACTTTGGCAAAATTACACTTTTCCCCTA
Found at i:73272215 original size:40 final size:40
Alignment explanation
Indices: 73272171--73272355 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
73272161 GCTACTCGTT
* *
73272171 CAAATGCCTTCGGGACATAGCCCGGTTATACTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
73272211 CAAATGCCTTCGGGACTTAACCTGGATT-TAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
73272251 CTAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
73272290 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
73272331 CAAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
73272356 ATATCATTCG
Statistics
Matches: 116, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
38 2 0.02
39 28 0.24
40 59 0.51
41 24 0.21
42 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:73272271 original size:79 final size:81
Alignment explanation
Indices: 73272171--73272356 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
73272161 GCTACTCGTT
* * *
73272171 CAAATGCCTTCGGGACATAGCCCGG-TTATACTAACTCGCACAAATGCCTTCGGGA-CTTAACCT
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TACTAACTCACACAAATGCCTTC-GGATCTTAACCT
* * *
73272234 GGATTTAGTGAC-TCGCA
64 GGATATAGTCACTTAGCA
* * **
73272251 CTAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGATCTTAGTCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTACTAACTCACACAAATGCCTTCGGATCTTAACCTGG
73272315 ATATAGTCACTTAGCA
66 ATATAGTCACTTAGCA
*
73272331 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73272357 TATCATTCGA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
78 3 0.03
79 46 0.51
80 30 0.33
81 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTACTAACTCACACAAATGCCTTCGGATCTTAACCTGG
ATATAGTCACTTAGCA
Found at i:73277245 original size:30 final size:31
Alignment explanation
Indices: 73277202--73277259 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
73277192 TTAATACGAA
*
73277202 TTTTGGCAAAATTACATTTTTGCCCCTAAAC
1 TTTTGGCAAAATTACACTTTTGCCCCTAAAC
*
73277233 TTTT-GCATAATTACACTTTTGCCCCTA
1 TTTTGGCAAAATTACACTTTTGCCCCTA
73277260 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (31 bp):
TTTTGGCAAAATTACACTTTTGCCCCTAAAC
Found at i:73283874 original size:906 final size:908
Alignment explanation
Indices: 73281486--73284192 Score: 4588
Period size: 906 Copynumber: 3.0 Consensus size: 908
73281476 GTAAGCTTAT
*
73281486 GTTAGAATGGGCCCGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
1 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
* *
73281551 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTATGTTTTACTAAAAAACTGAGT
66 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
73281616 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGGTTTACCAAAAAAATCT-ATTTC
131 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTT-GGGTTTACCAAAAAAATCTAATTT-
73281680 TCATTTCTCTGCTTTCTATTTTTACAAAATTC-AGTTGTCCCCTTCCTTTTTCCTCTCGACCCTG
194 TCATTTCTCTGCTTTCTATTTTTACAAAATTCGA-TTGTCCCCTTCCTTTTTCCTCTCGACCCTG
73281744 CTGCTGAGTTTCCCCAC-TTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAAT
258 CTGCTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAAT
* * * * *
73281808 CCATCGCTTTAGTTCTCTATTTGCATTCCTAGTAAGTATGGTAGTATAGTATTGAGGAATAATAA
323 CCATCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGA
73281873 ATCATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAA-CAGAGGGCTGGAGATCATTAATTG
388 ATCATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTG
* * * *
73281937 ACATTCTAAGTGTACGAAACCCCGCTTGATTCGACTGAAGGTAACATTTTTGTGAGTTTAACGTT
453 ACATTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTT
73282002 CGGTCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTA
518 CGGTCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTA
73282067 AATAAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAA
583 AATAAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAA
* * *
73282132 ACACAAAAAACGAGAACCGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGCTCA
648 ACACAAAAAATGAGAACTGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCA
* * *
73282197 CCCGTGTGATAGGCCGTGTGGTAGTACACAAGCGTA--TGAGCCTACACGGGCAGGCCACATGGG
713 CCCGTGTGGTAGGCCGTGTGGTAGTACAC-AG-GTATGTGGGCCCACACGGGCAGGCCACATGGG
* *
73282260 CGTGTGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGTACAGGTTGCCTAAGTCGACTATGACC
776 CGTGTGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACC
*
73282325 TGCCGTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTATGTGATGTATGTAT
841 TGCCGTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGTAT
*
73282390 CTT
906 CTA
* * * *
73282393 GTTAGAATGGGCCTGCTGGTCCGGTGGATAACTAGAGTGTTGGTGGGATAGAGGTTCTGTGTTCT
1 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
73282458 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
66 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
* *
73282523 AGTGGGGA----GT-G-G-G---TAAGGGAATTAGAGTTGGTGTTTACCAAAAAAATCTAATTCT
131 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGG-GTTTACCAAAAAAATCTAATTTT
*
73282578 CATTTCTCTGCTTTCTATTTTTACAAAATTCGGTTGTCCCCTTCCTTTTTCCTCTCGACCCTGCT
195 CATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGTCCCCTTCCTTTTTCCTCTCGACCCTGCT
73282643 GCTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCC
260 GCTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCC
* * *
73282708 ATCACTTTAGTTCTCTTTTTGCATTCTTGGTAAATACGGTAGTACAGTATTGAGGAATAATGAAT
325 ATCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAAT
73282773 CATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGAC
390 CATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGAC
* * *
73282838 ATTCTAAGTGTACAAAACCCCGATTGATTCGACTGAGGGTAACGTTTTTGTGAGTTTAGTGTTCA
455 ATTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTTCG
* *
73282903 ATCATCTCGTGGGATTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAA
520 GTCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAA
* * *
73282968 TAAAGGATCGGGAGTGCTTGAGCTAGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAAC
585 TAAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAAC
* * * * *
73283033 ACAAAAAATGAGAACTGTTAAAAGTCAAAACGATTCTTTCGATGCCACTCAAGCGTGTGGTCACC
650 ACAAAAAATGAGAACTGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACC
* *
73283098 CGTGTGGTAAGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATAGGCGTG
715 CGTGTGGTAGGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATGGGCGTG
* *
73283163 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAATCGACTATGACCTGTC
780 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACCTGCC
* *
73283228 GTAGGGTCGGTAAGCATTACTTAGACCCTTGATTCTATAATTTGTTGTGTGATGTATGTATCTA
845 GTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGTATCTA
73283292 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
1 GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
* *
73283357 ATTCTCTACGTGAGCAA-GGGATAGTATTTTTGTTGCAAGTTTGTGTTTTAGTGAAAAACTGAGT
66 ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
73283421 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGTTTACCAAAAAAATCTAATTTTC
131 AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGTTTACCAAAAAAATCTAATTTTC
73283486 ATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGT-CCCTTCCTTTTTCCTCTCGACCCTGCTG
196 ATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGTCCCCTTCCTTTTTCCTCTCGACCCTGCTG
73283550 CTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCCA
261 CTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCCA
* *
73283615 TCACTTCAGTTCTCTGTTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAATC
326 TCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAATC
73283680 ATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGACA
391 ATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGACA
* *
73283745 TTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTCGTGAGTTTAGCATTCGG
456 TTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTTCGG
*
73283810 TCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTAGCGTTATATTGGTTAAAT
521 TCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAAT
73283875 AAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAACA
586 AAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAACA
* *
73283940 CAAAAAATGAGAA-TCGGTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACT
651 CAAAAAATGAGAACT-GTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACC
** * *
73284004 CGTGTGGTAGGCCGTGTGGTAGTACACAGGCGTGTGGGCCCACACGGGTAGGCCACATGGGCATG
715 CGTGTGGTAGGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATGGGCGTG
* * * *
73284069 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTCGCCTAAGTTGACTATGGCCTACC
780 TGAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACCTGCC
* *
73284134 GTAGGGTCGGTAAGCGTTATTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGT
845 GTAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGT
73284193 GTTAAACATG
Statistics
Matches: 1684, Mismatches: 98, Indels: 37
0.93 0.05 0.02
Matches are distributed among these distances:
896 2 0.00
897 114 0.07
898 203 0.12
899 517 0.31
900 1 0.00
901 1 0.00
902 3 0.00
903 3 0.00
904 1 0.00
905 2 0.00
906 631 0.37
907 189 0.11
908 17 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (908 bp):
GTTAGAATGGGCCTGCTGGTCTGGTGGATAAGTAGAGTGTTGGTGGGATAGAGGTCCTGTGTTCG
ATTCTCTACGTGGGCAAGGGGATAGTATTTTTGTTGCAAGTTTGTGTTTTACTGAAAAACTGAGT
AGTGGGGAGTGGGTGGAGAGAATTAAGGGAATTGGAGTTGGGTTTACCAAAAAAATCTAATTTTC
ATTTCTCTGCTTTCTATTTTTACAAAATTCGATTGTCCCCTTCCTTTTTCCTCTCGACCCTGCTG
CTGAGTTTCCCCACTTTTTCCTGATTACAACCATTTTCTTTTTATCACTTAGTATCTGCAATCCA
TCACTTTAGTTCTCTATTTGCATTCTTGGTAAGTACGGTAGTATAGTATTGAGGAATAATGAATC
ATTGCTTATTGGGTATTGATTGGTGATTAGGAGATAATCAGAGGGCTGGAGATCATTAATTGACA
TTCTAAGTGTACAAAACCCCGATTGATTCGACTGAAGGTAACGTTTTTGTGAGTTTAGCGTTCGG
TCATCTCGTGGGTTTTCGTTTGAGTATAGCCTTAAGTGACTAATTTGGCGTTATATTGGTTAAAT
AAAGGTTCGGGAGTGCTCGAGCTCGTTTAAGCTTCGAATCAATATCAGATGTGTAACCAAAAACA
CAAAAAATGAGAACTGTTAAAAGTCGAAACGATTCTGTCGACGCCACACGAGCGTGTGGTCACCC
GTGTGGTAGGCCGTGTGGTAGTACACAGGTATGTGGGCCCACACGGGCAGGCCACATGGGCGTGT
GAGCCCATCTTTCTGAAATAGTTTGTAAGGTTGCACGGGTTGCCTAAGTCGACTATGACCTGCCG
TAGGGTCGGTAAGCATTACTTAGACCCCTGATTCTGTAATTTGTTGTGTGATGTATGTATCTA
Found at i:73287117 original size:25 final size:25
Alignment explanation
Indices: 73287087--73287164 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
73287077 TAGGATTTTA
73287087 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
73287112 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
73287134 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
73287159 TGTGAT
1 TGTGAT
73287165 AAGGCCGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.28, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:73287137 original size:47 final size:47
Alignment explanation
Indices: 73287086--73287323 Score: 413
Period size: 47 Copynumber: 5.1 Consensus size: 47
73287076 TTAGGATTTT
73287086 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
73287133 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
73287180 ATGTGATGAATGTGAACATGTGTAGGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
73287227 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
73287274 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
73287321 ATG
1 ATG
73287324 CGAAACATGT
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:73287363 original size:46 final size:46
Alignment explanation
Indices: 73287297--73287387 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
73287287 GAACATGTAT
* *
73287297 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
73287343 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
73287388 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:73290911 original size:29 final size:28
Alignment explanation
Indices: 73290871--73290973 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
73290861 GTGACGAGAT
* *
73290871 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* * *
73290900 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
*
73290929 TGGCACTATGTGTGC-AGGCTTGAATCATA
1 TGGCACTAAGTGTGCGA-GCTTGAAT-ATA
73290958 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73290974 TGATTGAGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
28 4 0.07
29 55 0.92
30 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:73298635 original size:24 final size:24
Alignment explanation
Indices: 73298605--73298871 Score: 471
Period size: 24 Copynumber: 11.1 Consensus size: 24
73298595 GAATGTGACT
* *
73298605 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
73298629 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
73298653 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
73298677 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
73298701 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
73298725 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
73298749 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
73298773 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
73298797 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
73298821 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
73298845 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
73298869 ATA
1 ATA
73298872 TGGTCTTTGC
Statistics
Matches: 237, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 237 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:73302796 original size:29 final size:29
Alignment explanation
Indices: 73302734--73302836 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
73302724 GTGACGAGAT
* * *
73302734 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
73302763 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
73302792 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
73302821 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73302837 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:73322561 original size:23 final size:23
Alignment explanation
Indices: 73322519--73322565 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
73322509 TGCAATTAGG
*
73322519 TATGTATTTTGTTCCGTTTTTAA
1 TATGTATTTTGTTCCATTTTTAA
73322542 TATGTATTTTG-TCTCATTTTTAA
1 TATGTATTTTGTTC-CATTTTTAA
73322565 T
1 T
73322566 GATTTCTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.19, C:0.09, G:0.11, T:0.62
Consensus pattern (23 bp):
TATGTATTTTGTTCCATTTTTAA
Found at i:73323247 original size:40 final size:40
Alignment explanation
Indices: 73323203--73323304 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
73323193 TGACAAATCA
* *
73323203 GCTATTTATGGCACTTAGTGT-ATGATTCGACATAGCTTCG
1 GCTATATATGACACTTAGTGTGA-GATTCGACATAGCTTCG
*
73323243 GCTATATATGACACTTAGTGTGAGATTCGAGATAGCTTCG
1 GCTATATATGACACTTAGTGTGAGATTCGACATAGCTTCG
* **
73323283 GCTATGTACAACACTTAGTGTG
1 GCTATATATGACACTTAGTGTG
73323305 CAAGATATTG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 54 0.98
41 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (40 bp):
GCTATATATGACACTTAGTGTGAGATTCGACATAGCTTCG
Found at i:73323345 original size:28 final size:28
Alignment explanation
Indices: 73323294--73323403 Score: 139
Period size: 28 Copynumber: 3.9 Consensus size: 28
73323284 CTATGTACAA
** *
73323294 CACTTAGTGTGCAAGATATTGAGTGTGG
1 CACTTAGTGTGTGAGATATTGAGTATGG
* * * *
73323322 CGCTTAGTGTGTGAGACATCGAGTATGA
1 CACTTAGTGTGTGAGATATTGAGTATGG
73323350 CACTTAGTGTGTGAGATATTGAGTATGG
1 CACTTAGTGTGTGAGATATTGAGTATGG
* *
73323378 TACTTAGTGTGTGATATATTGAGTAT
1 CACTTAGTGTGTGAGATATTGAGTAT
73323404 TCAACAACAT
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.25, C:0.09, G:0.30, T:0.35
Consensus pattern (28 bp):
CACTTAGTGTGTGAGATATTGAGTATGG
Done.