Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 256 of 427
Found at i:73327516 original size:40 final size:39
Alignment explanation
Indices: 73327479--73327702 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 39
73327469 GCGACTCGTT
* *
73327479 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCA
* *
73327519 CAAATGCCTTCGGGACTTAACCCGAATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCG-GTTTAGTAACTCGCA
73327559 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
* * *
73327599 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
** * * * *
73327638 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGG-TTTAGTAAC-TCGCA
*
73327679 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
73327703 ACATCATTCG
Statistics
Matches: 160, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 33 0.21
40 112 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
Found at i:73327583 original size:80 final size:79
Alignment explanation
Indices: 73327479--73327701 Score: 283
Period size: 80 Copynumber: 2.8 Consensus size: 79
73327469 GCGACTCGTT
* *
73327479 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
73327544 ATTTAGTGACTCGCA
66 A-TTAGTAACTCGCA
* *
73327559 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-
73327622 GAATTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* * * * *
73327638 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
73327701 G
64 G
73327702 GACATCATTC
Statistics
Matches: 125, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
78 4 0.03
79 53 0.42
80 66 0.53
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
ATTAGTAACTCGCA
Found at i:73327687 original size:119 final size:120
Alignment explanation
Indices: 73327481--73327703 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
73327471 GACTCGTTCA
*
73327481 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
* * *
73327546 TTAGTGACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* ** * *
73327601 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCTGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGA
*
73327663 ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
73327704 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAAT
ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:73335775 original size:40 final size:40
Alignment explanation
Indices: 73335720--73336009 Score: 465
Period size: 40 Copynumber: 7.2 Consensus size: 40
73335710 AACATTGGAA
73335720 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73335760 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73335800 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73335840 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73335880 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73335920 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73335959 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73336000 CTATATCCGG
1 ATATATCCGG
73336010 TTAAATCCCG
Statistics
Matches: 231, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 229 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73343920 original size:40 final size:40
Alignment explanation
Indices: 73343865--73344154 Score: 465
Period size: 40 Copynumber: 7.2 Consensus size: 40
73343855 AACATTGGAA
73343865 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73343905 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73343945 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73343985 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73344025 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73344065 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73344104 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73344145 CTATATCCGG
1 ATATATCCGG
73344155 TTAAATCCCG
Statistics
Matches: 231, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 229 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73347811 original size:27 final size:27
Alignment explanation
Indices: 73347781--73347899 Score: 166
Period size: 27 Copynumber: 4.4 Consensus size: 27
73347771 CCCCAAAATA
73347781 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
73347808 GGTAAAATGACCGTAATTCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
* * *
73347835 GGTAAAATGATCGTAATACCCCTGTAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
* *
73347862 GGTAAAATGACCGTAATGTCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
73347889 GGTAATATGAC
1 GGTAAAATGAC
73347900 GATTATGCCC
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:73348303 original size:33 final size:33
Alignment explanation
Indices: 73348226--73348312 Score: 103
Period size: 28 Copynumber: 2.8 Consensus size: 33
73348216 TTATTGCATT
* * *
73348226 ACACTATACTGATACTGTATTGGGCTTAGGCCC
1 ACACTGTACTGATACTGTATAGGGCTAAGGCCC
73348259 ACACTG---T--TACTGTATAGGGCTAAGGCCC
1 ACACTGTACTGATACTGTATAGGGCTAAGGCCC
*
73348287 ACACTGTACTGATACTGAATAGGGCT
1 ACACTGTACTGATACTGTATAGGGCT
73348313 CAGCCCAGAC
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
28 25 0.56
30 1 0.02
31 1 0.02
33 18 0.40
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (33 bp):
ACACTGTACTGATACTGTATAGGGCTAAGGCCC
Found at i:73356507 original size:24 final size:24
Alignment explanation
Indices: 73356456--73356668 Score: 290
Period size: 24 Copynumber: 9.0 Consensus size: 24
73356446 GCTTTATCAT
*
73356456 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
73356481 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73356505 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73356528 ATAACTTGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
73356551 ATAATTGGGGTATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
73356575 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
73356599 ATAACTGGGGCATAAGCCATTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73356623 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73356646 ATAACTGGGGCATAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73356669 GCACTTCCTC
Statistics
Matches: 171, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
23 63 0.37
24 96 0.56
25 12 0.07
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73356669 original size:47 final size:48
Alignment explanation
Indices: 73356456--73356669 Score: 283
Period size: 47 Copynumber: 4.5 Consensus size: 48
73356446 GCTTTATCAT
* * *
73356456 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCCT-TTTTGATAACTGGGGCATAAGCCCTTTTA
* * *
73356505 ATAACTGGGGCATAAGCC-CTTTAATAACTTGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCTTTTTGATAACTGGGGCATAAGCCCTTTTA
* * * *
73356551 ATAATTGGGGTATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCTTTTTGATAACTGGGGCATAAGCCCTTTTA
*
73356599 ATAACTGGGGCATAAGCCATTTTGATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCTTTTTGATAACTGGGGCATAAGCCCTTTTA
73356646 ATAACTGGGGCATAAGCCTTTTTG
1 ATAACTGGGGCATAAGCCTTTTTG
73356670 CACTTCCTCC
Statistics
Matches: 147, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
46 20 0.14
47 68 0.46
48 47 0.32
49 12 0.08
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCTTTTTGATAACTGGGGCATAAGCCCTTTTA
Found at i:73356742 original size:20 final size:20
Alignment explanation
Indices: 73356714--73356783 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
73356704 GCATTTATGA
*
73356714 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73356734 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
73356754 -CATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73356773 ACATATCATGT
1 ACATATCATGT
73356784 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 18 0.39
20 28 0.61
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:73356749 original size:11 final size:11
Alignment explanation
Indices: 73356719--73356772 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
73356709 TATGAACATC
73356719 TCATGTGCATA
1 TCATGTGCATA
*
73356730 TCA--TACATA
1 TCATGTGCATA
73356739 TCATGTGCATA
1 TCATGTGCATA
*
73356750 TCA--T-CATG
1 TCATGTGCATA
73356758 TCATGTGCATA
1 TCATGTGCATA
73356769 TCAT
1 TCAT
73356773 ACATATCATG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 6 0.18
9 9 0.26
10 1 0.03
11 18 0.53
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:73361144 original size:29 final size:29
Alignment explanation
Indices: 73361054--73361213 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
73361044 ACTCCATTTC
* * **
73361054 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
73361083 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
73361111 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
73361141 GCACACTTAGTGCCATATATTTCCAACAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
73361170 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
73361199 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
73361214 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
28 2 0.02
29 106 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:73367950 original size:23 final size:24
Alignment explanation
Indices: 73367875--73368043 Score: 249
Period size: 24 Copynumber: 7.2 Consensus size: 24
73367865 GCTTTATCAT
*
73367875 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
73367900 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73367924 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73367947 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73367970 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
73367994 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73368018 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73368040 ATAA
1 ATAA
73368044 TAAGCCCTTT
Statistics
Matches: 137, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
22 7 0.05
23 58 0.42
24 60 0.44
25 12 0.09
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73367950 original size:47 final size:46
Alignment explanation
Indices: 73367896--73368076 Score: 245
Period size: 47 Copynumber: 4.1 Consensus size: 46
73367886 CCTAGCCTCT
*
73367896 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
73367943 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
* *
73367989 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
73368036 TTTAAT-A-------ATAAGCCCTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
73368074 TTT
1 TTT
73368077 TGCACTTCCT
Statistics
Matches: 126, Mismatches: 5, Indels: 15
0.86 0.03 0.10
Matches are distributed among these distances:
37 9 0.07
38 23 0.18
45 1 0.01
46 28 0.22
47 56 0.44
48 9 0.07
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
Found at i:73368048 original size:15 final size:15
Alignment explanation
Indices: 73368028--73368058 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73368018 ATAACTGGGC
73368028 ATAAGCCCTTTAATA
1 ATAAGCCCTTTAATA
73368043 ATAAGCCCTTTAATA
1 ATAAGCCCTTTAATA
73368058 A
1 A
73368059 CTGGGGCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAAGCCCTTTAATA
Found at i:73368151 original size:20 final size:20
Alignment explanation
Indices: 73368123--73368173 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
73368113 GCATTTATGA
*
73368123 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
73368143 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
73368163 ACATGTCATGT
1 ACATATCATGT
73368174 TTATCAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:73379699 original size:27 final size:28
Alignment explanation
Indices: 73379642--73379711 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
73379632 AAATTTGTAC
**
73379642 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
73379670 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
73379697 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73379712 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:73379720 original size:27 final size:27
Alignment explanation
Indices: 73379642--73379723 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
73379632 AAATTTGTAC
* *
73379642 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
73379670 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
73379697 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
73379724 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:73387674 original size:27 final size:28
Alignment explanation
Indices: 73387642--73387707 Score: 96
Period size: 32 Copynumber: 2.2 Consensus size: 28
73387632 CAATCTAAAA
73387642 GAAAAAATAAAGGAATTAGGACCAGATT
1 GAAAAAATAAAGGAATTAGGACCAGATT
73387670 GAAAAACAATATTAAGGAATTAGGACCAGATT
1 G-AAAA-AATA--AAGGAATTAGGACCAGATT
73387702 GAAAAA
1 GAAAAA
73387708 TAATTAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
28 1 0.03
29 4 0.12
30 5 0.15
31 4 0.12
32 20 0.59
ACGTcount: A:0.55, C:0.08, G:0.20, T:0.18
Consensus pattern (28 bp):
GAAAAAATAAAGGAATTAGGACCAGATT
Found at i:73387727 original size:32 final size:32
Alignment explanation
Indices: 73387659--73387727 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
73387649 TAAAGGAATT
* * **
73387659 AGGACCAGATTGAAAAACAATATTAAGGAATT
1 AGGACCAGATTGAAAAACAATATAAAAGAAGA
*
73387691 AGGACCAGATTGAAAAATAAT-TAAAAAGAAGA
1 AGGACCAGATTGAAAAACAATAT-AAAAGAAGA
73387723 AGGAC
1 AGGAC
73387728 TGGAGTGACA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.54, C:0.09, G:0.20, T:0.17
Consensus pattern (32 bp):
AGGACCAGATTGAAAAACAATATAAAAGAAGA
Found at i:73390061 original size:14 final size:15
Alignment explanation
Indices: 73390042--73390070 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73390032 AACTTAATCA
73390042 TCAAG-CATTATTAT
1 TCAAGCCATTATTAT
73390056 TCAAGCCATTATTAT
1 TCAAGCCATTATTAT
73390071 CTTATTACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (15 bp):
TCAAGCCATTATTAT
Found at i:73392382 original size:40 final size:40
Alignment explanation
Indices: 73392337--73392503 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73392327 CGGAATATAA
73392337 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73392377 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73392417 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73392457 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73392496 CCGGATAT
1 CCGGATAT
73392504 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73392487 original size:80 final size:79
Alignment explanation
Indices: 73392337--73392503 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
73392327 CGGAATATAA
* *
73392337 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
73392402 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
73392417 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
73392479 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
73392496 CCGGATAT
1 CCGGATAT
73392504 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:73393351 original size:17 final size:19
Alignment explanation
Indices: 73393328--73393373 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73393318 AAGAAGCATG
73393328 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73393346 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73393364 AATCATGCTC
1 AATCATGCTC
73393374 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73400451 original size:40 final size:40
Alignment explanation
Indices: 73400340--73400490 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
73400330 GATATCACGT
* * *
73400340 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* **
73400380 GCACGAA-TGCCTTCGGGCCTTAGCCCGGATATAACCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* ** *
73400420 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
* *
73400460 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
73400491 CATTCAATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
39 15 0.16
40 78 0.82
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACTA
Found at i:73400474 original size:80 final size:79
Alignment explanation
Indices: 73400340--73400490 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
73400330 GATATCACGT
*
73400340 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
73400405 CGGATATAACCACTA
65 CGGATATAACCACTA
* * ** * *
73400420 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
73400483 CCGGATAT
64 CCGGATAT
73400491 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAACCACTA
Found at i:73401334 original size:17 final size:19
Alignment explanation
Indices: 73401311--73401356 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73401301 AAGAAGCATG
73401311 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73401329 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73401347 AATCATGCTC
1 AATCATGCTC
73401357 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73403414 original size:40 final size:40
Alignment explanation
Indices: 73403369--73403534 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
73403359 CGGAATATAA
73403369 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73403409 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73403449 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73403488 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73403527 CCGGATAT
1 CCGGATAT
73403535 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73403491 original size:39 final size:38
Alignment explanation
Indices: 73403385--73403496 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
73403375 ATAATCACGT
* * *
73403385 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
73403425 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
73403464 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
73403497 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:73403518 original size:79 final size:78
Alignment explanation
Indices: 73403385--73403534 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
73403375 ATAATCACGT
*
73403385 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
73403450 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
73403464 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
73403527 CCGGATAT
64 CCGGATAT
73403535 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:73404382 original size:17 final size:19
Alignment explanation
Indices: 73404359--73404404 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73404349 AAGAAGCATG
73404359 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73404377 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73404395 AATCATGCTC
1 AATCATGCTC
73404405 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73411401 original size:40 final size:40
Alignment explanation
Indices: 73411356--73411522 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73411346 CGGAATATAA
73411356 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73411396 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73411436 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73411476 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73411515 CCGGATAT
1 CCGGATAT
73411523 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73411506 original size:80 final size:79
Alignment explanation
Indices: 73411356--73411522 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
73411346 CGGAATATAA
* *
73411356 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
73411421 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
73411436 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
73411498 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
73411515 CCGGATAT
1 CCGGATAT
73411523 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:73412370 original size:17 final size:19
Alignment explanation
Indices: 73412347--73412392 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
73412337 AAGAAGCATG
73412347 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
73412365 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
73412383 AATCATGCTC
1 AATCATGCTC
73412393 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:73413330 original size:13 final size:13
Alignment explanation
Indices: 73413312--73413340 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73413302 TTCAATTATT
73413312 TATATTTATCACA
1 TATATTTATCACA
73413325 TATATTTATCACA
1 TATATTTATCACA
73413338 TAT
1 TAT
73413341 CCAACATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (13 bp):
TATATTTATCACA
Found at i:73414933 original size:93 final size:93
Alignment explanation
Indices: 73414801--73414973 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
73414791 CGCCCATAAG
* * *
73414801 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73414866 ACAAGCTCGGATGCCTAGTTACATCTCT
66 ACAAGCTCGGATGCCTAGTTACATCTCT
*
73414894 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
73414959 ACGAGTTCGGATGCC
66 ACAAGCTCGGATGCC
73414974 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCT
Found at i:73414969 original size:46 final size:46
Alignment explanation
Indices: 73414794--73414969 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
73414784 TGTAACCCGC
* * *
73414794 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
73414840 CCATGAGTGAACTCGGACTCAACTCAACAAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
73414886 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
73414933 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
73414970 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:73414988 original size:46 final size:44
Alignment explanation
Indices: 73414802--73414988 Score: 112
Period size: 46 Copynumber: 4.0 Consensus size: 44
73414792 GCCCATAAGC
* ** ** **
73414802 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T-AGT
* * * *
73414848 GAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCT--C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CTAGT
* *
73414895 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T-AGT
73414941 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCTAGT
73414987 GA
1 GA
73414989 CATGTCACTT
Statistics
Matches: 109, Mismatches: 17, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
46 61 0.56
47 27 0.25
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCTAGT
Found at i:73417377 original size:29 final size:29
Alignment explanation
Indices: 73417340--73417423 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
73417330 GATAATAAGA
*
73417340 AAACC-GAATAAAGAAATCCAAGATAGAG
1 AAACCAGAATAAAGAAATCCAAGATAAAG
73417368 AAACCAGAATAAAGAAATCC-AGAATAAAG
1 AAACCAGAATAAAGAAATCCAAG-ATAAAG
* * *
73417397 AGATCCAGGATAAAGAAACCCAAGATA
1 A-AACCAGAATAAAGAAATCCAAGATA
73417424 CGATACTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.15
29 20 0.42
30 19 0.40
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (29 bp):
AAACCAGAATAAAGAAATCCAAGATAAAG
Found at i:73417389 original size:15 final size:15
Alignment explanation
Indices: 73417336--73417414 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
73417326 CAAAGATAAT
*
73417336 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73417350 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
73417365 GAGAAA-CCAGAATA
1 AAGAAATCCAGAATA
73417379 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73417394 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73417409 AAGAAA
1 AAGAAA
73417415 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
14 20 0.36
15 35 0.64
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73417423 original size:15 final size:15
Alignment explanation
Indices: 73417347--73417423 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
73417337 AGAAAACCGA
73417347 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
73417362 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
73417375 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
73417390 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
73417406 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
73417421 ATA
1 ATA
73417424 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:73420389 original size:45 final size:45
Alignment explanation
Indices: 73420325--73420498 Score: 217
Period size: 45 Copynumber: 3.8 Consensus size: 45
73420315 TGTAACCCGC
*
73420325 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
73420370 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
73420416 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
73420463 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73420499 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 33 0.30
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:73420491 original size:93 final size:92
Alignment explanation
Indices: 73420333--73420503 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
73420323 GCCCATAAGT
*
73420333 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
73420398 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
73420425 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
73420490 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
73420504 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 27 0.36
93 48 0.64
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:73420518 original size:46 final size:44
Alignment explanation
Indices: 73420330--73420518 Score: 129
Period size: 46 Copynumber: 4.1 Consensus size: 44
73420320 CCCGCCCATA
* * * *
73420330 AGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCCCAAATCC-T
* *
73420374 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
73420424 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
73420467 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
73420514 AGTGA
1 AGTGA
73420519 CATGTCACTT
Statistics
Matches: 115, Mismatches: 12, Indels: 33
0.72 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 6 0.05
45 31 0.27
46 33 0.29
47 28 0.24
48 4 0.03
49 3 0.03
50 4 0.03
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:73433865 original size:24 final size:25
Alignment explanation
Indices: 73433833--73433890 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
73433823 CTGGAGGCCT
*
73433833 AGCCTTTTTTAAT-AACTAGGGCAA
1 AGCCCTTTTTAATAAACTAGGGCAA
** *
73433857 AGCCCTTTTTGGTAAACTGGGGCAA
1 AGCCCTTTTTAATAAACTAGGGCAA
73433882 AGCCCTTTT
1 AGCCCTTTT
73433891 CGCACTTCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 10 0.34
25 19 0.66
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (25 bp):
AGCCCTTTTTAATAAACTAGGGCAA
Found at i:73434125 original size:27 final size:27
Alignment explanation
Indices: 73434095--73434217 Score: 122
Period size: 27 Copynumber: 4.6 Consensus size: 27
73434085 GGGGTAAAAT
* *
73434095 GGTAATTTTATCCC-ACAAGGGTATCTC
1 GGTAATTCTA-CCCTACAAAGGTATCTC
*
73434122 GGTAATTCTACCCTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAAGGTATCTC
* ** *
73434149 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAAGGTATCTC
* ** *
73434176 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAAGGTATCTC
*
73434203 GATAATTCTACCCTA
1 GGTAATTCTACCCTA
73434218 TAGGGGTATT
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 3 0.03
27 84 0.97
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAAGGTATCTC
Found at i:73434154 original size:54 final size:54
Alignment explanation
Indices: 73434095--73434236 Score: 169
Period size: 54 Copynumber: 2.6 Consensus size: 54
73434085 GGGGTAAAAT
* *
73434095 GGTAATTTTATCCC-ACAAGGGTATCTCGGTAATTCTACCCTACAAAGGTATTTC
1 GGTAATTCTA-CCCTACAAGGGTATCTCGATAATTCTACCCTACAAAGGTATTTC
* * * **
73434149 GGTAATTCTACCCTATAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAAAGGTATTTC
* * * *
73434203 GATAATTCTACCCTATAGGGGTATTTCGATAATT
1 GGTAATTCTACCCTACAAGGGTATCTCGATAATT
73434237 TTACAAGTCG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 3 0.04
54 76 0.96
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAAAGGTATTTC
Found at i:73434222 original size:27 final size:27
Alignment explanation
Indices: 73434113--73434236 Score: 185
Period size: 27 Copynumber: 4.6 Consensus size: 27
73434103 TATCCCACAA
* * *
73434113 GGGTATCTCGGTAATTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
73434140 AGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
73434167 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
73434194 GGGTATTTCGATAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
73434221 GGGTATTTCGATAATT
1 GGGTATTTCGATAATT
73434237 TTACAAGTCG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:73434346 original size:27 final size:27
Alignment explanation
Indices: 73434219--73434346 Score: 150
Period size: 27 Copynumber: 4.7 Consensus size: 27
73434209 TCTACCCTAT
* * **
73434219 AGGGGTATTTCGATAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAACC
** * *
73434246 -GAGGGTATTTAAGTAATTTCACAAAAC
1 AG-GGGTATTTTGGTAATTTTACAAACC
* *
73434273 AGGGGTATTTTGGTAATCTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
73434300 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
73434327 AGGGGTATTTTGGTAATTTT
1 AGGGGTATTTTGGTAATTTT
73434347 GTAAATCAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:73434460 original size:27 final size:27
Alignment explanation
Indices: 73434221--73434460 Score: 135
Period size: 27 Copynumber: 8.9 Consensus size: 27
73434211 TACCCTATAG
* * *
73434221 GGGTATTTCGATAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
** * *
73434248 GGGTATTTAAGTAATTTCACAAAAC-A
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
73434274 GGGGTATTTTGGTAATCTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTACAAATCGA
*
73434301 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTTGGTAATTTTACAAATCGA
** *
73434328 GGGGTATTTTGGTAATTTTGTAAATCAA
1 -GGGTATTTTGGTAATTTTACAAATCGA
* ** **
73434356 AGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* **** * *
73434383 GAGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**** * **
73434410 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
*
73434437 GGGTACTTTGGTAATTTTACAAAT
1 GGGTATTTTGGTAATTTTACAAAT
73434461 TGAAGGCATT
Statistics
Matches: 174, Mismatches: 36, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 170 0.98
28 2 0.01
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:73435733 original size:40 final size:40
Alignment explanation
Indices: 73435679--73436032 Score: 192
Period size: 40 Copynumber: 9.1 Consensus size: 40
73435669 TGTTTGGAAA
* *
73435679 AAAAATGCCACTATAGGTCGAGCATTAGCGGTGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
* ** *
73435719 AAAAATGCCGCTATAGATCAAGCATTAGTAGCGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
* * *
73435759 AAAAATGCCACTATAGATCGAGCATTATC--T--TTTTTA
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
* * * * * *
73435795 AAAAACGCCACTATAGGTCAACCATTAGCTGTGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
* * * ** * * *
73435835 AAAAATGCCAC-AAAAATTAAGCATAACGCCGT-CGTTTT-
1 AAAAATGCCGCTATAGATCGAGCATTA-GCGGTGCTTTTTG
*** * * * * *
73435873 -ATGTTG-AGCTTTAG-T-G-GCATTAGTGGCGCTTTTTT
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
** * *
73435908 AAAAACACCGCTATAGATTGAGCATTAGCGTTGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
* * * * *
73435948 AAAAATGCCGCTCTAGATCGAGCATTGGTGGTGCTTTCTA
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
*** * * *
73435988 AAAAACATCGCTATAGGTCGACCATTAGCGGGGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
*
73436028 GAAAA
1 AAAAA
73436033 CATCACAAAA
Statistics
Matches: 228, Mismatches: 73, Indels: 26
0.70 0.22 0.08
Matches are distributed among these distances:
33 2 0.01
34 10 0.04
36 32 0.14
37 10 0.04
38 2 0.01
39 15 0.07
40 157 0.69
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (40 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCGGTGCTTTTTG
Found at i:73435821 original size:36 final size:36
Alignment explanation
Indices: 73435753--73435821 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
73435743 TTAGTAGCGC
* * * *
73435753 TTTTTGAAAAATGCCACTATAGATCGAGCATTATCT
1 TTTTTAAAAAACGCCACTATAGATCAACCATTATCT
*
73435789 TTTTTAAAAAACGCCACTATAGGTCAACCATTA
1 TTTTTAAAAAACGCCACTATAGATCAACCATTA
73435822 GCTGTGCTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (36 bp):
TTTTTAAAAAACGCCACTATAGATCAACCATTATCT
Found at i:73435831 original size:76 final size:78
Alignment explanation
Indices: 73435679--73435845 Score: 214
Period size: 76 Copynumber: 2.1 Consensus size: 78
73435669 TGTTTGGAAA
* * * * *
73435679 AAAAATGCCACTATAGGTCGAGCATTAGCGGTGCTTTTTGAAAAATGCCGCTATAGATCAAGCAT
1 AAAAATGCCACTATAGATCGAGCATTAGC-GT-CTTTTTAAAAAACGCCACTATAGATCAACCAT
73435744 TAGTAGCGCTTTTTG
64 TAGTAGCGCTTTTTG
* *
73435759 AAAAATGCCACTATAGATCGAGCATTATC-T-TTTTTAAAAAACGCCACTATAGGTCAACCATTA
1 AAAAATGCCACTATAGATCGAGCATTAGCGTCTTTTTAAAAAACGCCACTATAGATCAACCATTA
*
73435822 GCT-GTGCTTTTTG
66 G-TAGCGCTTTTTG
73435835 AAAAATGCCAC
1 AAAAATGCCAC
73435846 AAAAATTAAG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
76 49 0.63
77 1 0.01
78 1 0.01
80 27 0.35
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (78 bp):
AAAAATGCCACTATAGATCGAGCATTAGCGTCTTTTTAAAAAACGCCACTATAGATCAACCATTA
GTAGCGCTTTTTG
Found at i:73436102 original size:196 final size:188
Alignment explanation
Indices: 73435700--73436148 Score: 549
Period size: 196 Copynumber: 2.3 Consensus size: 188
73435690 TATAGGTCGA
* * * *
73435700 GCATTAGCGGTGCTTTTTGAAAAATGCCGCTATAGATCAAGCATTAGTAGCGCTTTTTGAAAAAT
1 GCATTAGTGGTGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAG-CGCGCTTTTTGAAAAAT
* * * *
73435765 GCCACTATAGATCGAGCATTATCTTTTTTAAAAAACGCCACTATAGGTCAACCATTAGCTGTGCT
65 GCCACTATAGATCGAGCATTATCTTTTCTAAAAAACACCACTATAGGTCAACCATTAGCGGGGCT
* * *
73435830 TTTTGAAAAATGCCACAAAAATTAAGCATAACGCCGTCGTTTTATGTTGAGCTTTAGTG
130 TTTTGAAAAATGCCAAAAAAATTAAGCACAACGCCGTCATTTTATGTTGAGCTTTAGTG
* * * * *
73435889 GCATTAGTGGCGCTTTTTTAAAAACACCGCTATAGATTGAGCATTAGCGTTGCTTTTTGAAAAAT
1 GCATTAGTGGTGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCG-CGCTTTTTGAAAAAT
* * * * * * *
73435954 GCCGCTCTAGATCGAGCATTGGTGGTGCTTTCTAAAAAACATCGCTATAGGTCGACCATTAGCGG
65 GCCACTATAGATCGAGCATT-AT-CT--TTTCTAAAAAACACCACTATAGGTCAACCATTAGCGG
*
73436019 GGCTTTTTGGAAAACAT-CACAAAAAAAATTAAGCACAACGCCGTCATTTTATGTTGAGTTTTAG
126 GGCTTTTT-GAAAA-ATGC-C-AAAAAAATTAAGCACAACGCCGTCATTTTATGTTGAGCTTTAG
73436083 TG
187 TG
* * *
73436085 GCATTAGTGGTGCTTTTTGAAAAAGGCCACTATAGATCGAGCATTAGCGGCACTTTTTGAAAAA
1 GCATTAGTGGTGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGC-GCGCTTTTTGAAAAA
73436149 CACCGCAAAA
Statistics
Matches: 218, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
188 1 0.00
189 72 0.33
190 1 0.00
191 1 0.00
193 38 0.17
194 6 0.03
195 3 0.01
196 95 0.44
197 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (188 bp):
GCATTAGTGGTGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGCGCTTTTTGAAAAATG
CCACTATAGATCGAGCATTATCTTTTCTAAAAAACACCACTATAGGTCAACCATTAGCGGGGCTT
TTTGAAAAATGCCAAAAAAATTAAGCACAACGCCGTCATTTTATGTTGAGCTTTAGTG
Found at i:73436108 original size:116 final size:114
Alignment explanation
Indices: 73435969--73436205 Score: 262
Period size: 116 Copynumber: 2.1 Consensus size: 114
73435959 TCTAGATCGA
* * * * ** *
73435969 GCATTGGTGGTGCTTTCTAAAAAACATCGCTATAGGTCGACCATTAGCGGGGCTTTTTGGAAAAC
1 GCATTAGTGGTGCTTTCTAAAAAACACCACTATAGATCGACCATTAGCGGCACTTTTTGAAAAAC
* *
73436034 ATCACAAAAAAAATTAAGCACA-ACGCCGTCATTTTATGTTGA-GTTTTAGTG
66 A-C-CAAAAAAAATTAAGCA-AGACGCCGTCATTTTATATTGATG-TATAGTG
* * ** *
73436085 GCATTAGTGGTGCTTTTTGAAAAAGGCCACTATAGATCGAGCATTAGCGGCACTTTTTGAAAAAC
1 GCATTAGTGGTGCTTTCTAAAAAACACCACTATAGATCGACCATTAGCGGCACTTTTTGAAAAAC
** * *
73436150 ACCGCAAAAAATTCAGTAAGACGCCGTCATTTTATATTGATGTATAGTG
66 ACCAAAAAAAATTAAGCAAGACGCCGTCATTTTATATTGATGTATAGTG
73436199 GCATTAG
1 GCATTAG
73436206 CAACACTTTT
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
113 1 0.01
114 44 0.44
115 2 0.02
116 54 0.53
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (114 bp):
GCATTAGTGGTGCTTTCTAAAAAACACCACTATAGATCGACCATTAGCGGCACTTTTTGAAAAAC
ACCAAAAAAAATTAAGCAAGACGCCGTCATTTTATATTGATGTATAGTG
Found at i:73436216 original size:114 final size:116
Alignment explanation
Indices: 73435998--73436222 Score: 260
Period size: 114 Copynumber: 2.0 Consensus size: 116
73435988 AAAAACATCG
* ** *
73435998 CTATAGGTCGACCATTAGCGGGGCTTTTTGGAAAACATCACAAAAAAAATTAAGCACAACGCCGT
1 CTATAGATCGACCATTAGCGGCACTTTTTGAAAAACATCACAAAAAAAATTAAGCACAACGCCGT
* * *****
73436063 CATTTTATGTTGAGTTTTAGTGGCATTAGTGGTGCTTTTTGAAAAAGGCCA
66 CATTTTATATTGAGTTATAGTGGCATTAGCAACACTTTTTGAAAAAGGCCA
* ** * *
73436114 CTATAGATCGAGCATTAGCGGCACTTTTTGAAAAACA-C-CGCAAAAAATTCAGTA-AGACGCCG
1 CTATAGATCGACCATTAGCGGCACTTTTTGAAAAACATCACAAAAAAAATTAAGCACA-ACGCCG
73436176 TCATTTTATATTGA-TGTATAGTGGCATTAGCAACACTTTTTGAAAAA
65 TCATTTTATATTGAGT-TATAGTGGCATTAGCAACACTTTTTGAAAAA
73436223 CGCCGCAAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
113 2 0.02
114 56 0.62
115 1 0.01
116 32 0.35
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (116 bp):
CTATAGATCGACCATTAGCGGCACTTTTTGAAAAACATCACAAAAAAAATTAAGCACAACGCCGT
CATTTTATATTGAGTTATAGTGGCATTAGCAACACTTTTTGAAAAAGGCCA
Found at i:73436563 original size:7 final size:7
Alignment explanation
Indices: 73436533--73436746 Score: 121
Period size: 7 Copynumber: 30.1 Consensus size: 7
73436523 TATCATTATA
73436533 GTTTAGG
1 GTTTAGG
*
73436540 TTTTAGG
1 GTTTAGG
* *
73436547 GTATATG
1 GTTTAGG
73436554 GTTTAGG
1 GTTTAGG
*
73436561 GTTTAAG
1 GTTTAGG
*
73436568 GTTTAGAA
1 GTTTAG-G
73436576 GTTACTA--
1 GTT--TAGG
* *
73436583 TTTTAAG
1 GTTTAGG
*
73436590 GTTTATG
1 GTTTAGG
* *
73436597 GATTATGA
1 GTTTA-GG
73436605 GTTTAGG
1 GTTTAGG
* *
73436612 GATTATG
1 GTTTAGG
*
73436619 GTTTATG
1 GTTTAGG
*
73436626 GTTTATG
1 GTTTAGG
73436633 GTTTAAGG
1 GTTT-AGG
*
73436641 G-TTGGG
1 GTTTAGG
*
73436647 GTTTAAG
1 GTTTAGG
73436654 GTTTA-G
1 GTTTAGG
73436660 GTGTTAGG
1 GT-TTAGG
*
73436668 GGTTAGG
1 GTTTAGG
*
73436675 GGTTAGGG
1 GTTTA-GG
*
73436683 GTTAAGG
1 GTTTAGG
*
73436690 GTTTAAG
1 GTTTAGG
73436697 GTTTAGG
1 GTTTAGG
73436704 GTTTAGG
1 GTTTAGG
73436711 GTTTAGG
1 GTTTAGG
*
73436718 GTTTATG
1 GTTTAGG
* *
73436725 TTTTATG
1 GTTTAGG
*
73436732 ATTTAGG
1 GTTTAGG
73436739 GTTTAGG
1 GTTTAGG
73436746 G
1 G
73436747 GATAAGGGAT
Statistics
Matches: 161, Mismatches: 35, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
5 2 0.01
6 6 0.04
7 134 0.83
8 17 0.11
10 2 0.01
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:73437391 original size:72 final size:73
Alignment explanation
Indices: 73437240--73437391 Score: 184
Period size: 72 Copynumber: 2.1 Consensus size: 73
73437230 TGATTGAAGG
* *
73437240 TTTATTTCTCTCCCCCCAATTCCCTTTTATTTCCCTATTCCCTGTTCTTTCTCAACCATTCTCAG
1 TTTATTTCTCTCCCCCCAATTCCCCTTTATTTCCCAATTCCCTGTTCTTTCTCAACCATTCTCAG
*
73437305 CTTGTACT
66 CCTGTACT
* * * * * *
73437313 TCTATTTCTCT-CCCCCGATTCCCCTTTCTTTCCCAATTCCCTTTTCTTTCTCAGCCTTTCT-AG
1 TTTATTTCTCTCCCCCCAATTCCCCTTTATTTCCCAATTCCCTGTTCTTTCTCAACCATTCTCAG
73437376 ACCTGCT-CT
66 -CCTG-TACT
73437385 TTTATTT
1 TTTATTT
73437392 TATACCCGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
71 2 0.03
72 54 0.81
73 11 0.16
ACGTcount: A:0.12, C:0.36, G:0.05, T:0.47
Consensus pattern (73 bp):
TTTATTTCTCTCCCCCCAATTCCCCTTTATTTCCCAATTCCCTGTTCTTTCTCAACCATTCTCAG
CCTGTACT
Found at i:73441348 original size:59 final size:57
Alignment explanation
Indices: 73441249--73441426 Score: 250
Period size: 59 Copynumber: 3.0 Consensus size: 57
73441239 TTGATACGTA
*
73441249 ATACATGCTAGGGTTC-GGTGCTTTTGAGTAGCCCTGTTGAGAGGCATGTGATTGTGTG
1 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCC-GTTGAGAGGCATGTGATT-TGTG
*
73441307 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCTCATTGAGAGGCATGTGAATTTGTG
1 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCC-CGTTGAGAGGCATGTG-ATTTGTG
* * *
73441366 GTACATGCTAGGGTCTGAGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTCTGTG
1 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAG-CCCGTTGAGAGGCATGTGATT-TGTG
73441425 AT
1 AT
73441427 CTGTGGCGCT
Statistics
Matches: 108, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
58 18 0.17
59 84 0.78
60 6 0.06
ACGTcount: A:0.19, C:0.15, G:0.33, T:0.33
Consensus pattern (57 bp):
ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCCGTTGAGAGGCATGTGATTTGTG
Found at i:73441650 original size:24 final size:24
Alignment explanation
Indices: 73441601--73441652 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
73441591 TTATGGAACG
*
73441601 TATGTATGCATGTGCTTTTGTATA
1 TATGTATGCATGTGCTTATGTATA
* *
73441625 TATGTATGGATGTG-TTCATGTGTA
1 TATGTATGCATGTGCTT-ATGTATA
73441649 TATG
1 TATG
73441653 GGTATGAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.21, C:0.06, G:0.25, T:0.48
Consensus pattern (24 bp):
TATGTATGCATGTGCTTATGTATA
Found at i:73450368 original size:25 final size:25
Alignment explanation
Indices: 73450340--73450387 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
73450330 AACCACCTAC
73450340 CAATGATACATATCCCTATCACATT
1 CAATGATACATATCCCTATCACATT
73450365 CAATGATACATATCCCTATCACA
1 CAATGATACATATCCCTATCACA
73450388 AATTTTCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.29, G:0.04, T:0.29
Consensus pattern (25 bp):
CAATGATACATATCCCTATCACATT
Found at i:73450972 original size:36 final size:36
Alignment explanation
Indices: 73450890--73450965 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
73450880 TCATGATTCA
73450890 CATATGTATATATCATATCTCATTCTCATAGCAATT
1 CATATGTATATATCATATCTCATTCTCATAGCAATT
73450926 CATATGTATATATCATATCTCATTCTCATAGCAATT
1 CATATGTATATATCATATCTCATTCTCATAGCAATT
73450962 CATA
1 CATA
73450966 CTTATATCAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (36 bp):
CATATGTATATATCATATCTCATTCTCATAGCAATT
Found at i:73452419 original size:46 final size:46
Alignment explanation
Indices: 73452369--73452497 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
73452359 TGGTTGAGCA
* *
73452369 TCCGAACACGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
73452415 TCCGAACTTGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
73452461 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73452498 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:73453941 original size:42 final size:42
Alignment explanation
Indices: 73453883--73454032 Score: 112
Period size: 44 Copynumber: 3.5 Consensus size: 42
73453873 TCCCAAACGT
* *
73453883 GGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACA
1 GGTCTTACACGAAATCAAATATCGATGCCACTATCCCAGACA
* * *
73453925 GGTCTTACACGAAATC-AATAT-GATGTCGA-TGTCTCAGACA
1 GGTCTTACACGAAATCAAATATCGATG-CCACTATCCCAGACA
* * *
73453965 TGGTCTTACACGAAAATCATAA-GTCGATGCCAACGA-CCCAGACGT
1 -GGTCTTACACG-AAATCA-AATATCGATGCC-ACTATCCCAGAC-A
* * *
73454010 GGCCTTACACGAAAACACATATC
1 GGTCTTACACGAAATCAAATATC
73454033 AGATCCTATG
Statistics
Matches: 83, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
40 13 0.16
41 18 0.22
42 20 0.24
43 9 0.11
44 23 0.28
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTATCCCAGACA
Found at i:73461597 original size:20 final size:20
Alignment explanation
Indices: 73461568--73461608 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
73461558 AAATCAATAC
*
73461568 GATGCCAATGTCCCAGACAT
1 GATGCCAATGTCCCACACAT
*
73461588 GATGCGAATGTCCCACACAT
1 GATGCCAATGTCCCACACAT
73461608 G
1 G
73461609 GTCTTACACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (20 bp):
GATGCCAATGTCCCACACAT
Found at i:73467531 original size:21 final size:20
Alignment explanation
Indices: 73467505--73467543 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
73467495 GCATGACAGT
73467505 AAGTTGGGCCTCAAGGGGCTG
1 AAGTTGGGCC-CAAGGGGCTG
*
73467526 AAGTTGGGCCCAATGGGC
1 AAGTTGGGCCCAAGGGGC
73467544 CTTCGGGCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.21, C:0.21, G:0.41, T:0.18
Consensus pattern (20 bp):
AAGTTGGGCCCAAGGGGCTG
Found at i:73467933 original size:9 final size:9
Alignment explanation
Indices: 73467919--73467975 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73467909 TGACATGCAC
73467919 ATGATATGT
1 ATGATATGT
*
73467928 ATGATATGCAC
1 ATGATATG--T
73467939 ATGATATGT
1 ATGATATGT
* *
73467948 ACGATATGCAC
1 ATGATATG--T
73467959 ATGATATGT
1 ATGATATGT
73467968 ATGATATG
1 ATGATATG
73467976 CACATGATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:73467936 original size:20 final size:20
Alignment explanation
Indices: 73467907--73467983 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
73467897 ACAATATTGA
*
73467907 TATGACATGCACATGATATG
1 TATGATATGCACATGATATG
73467927 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
73467947 TACGATATGCACATGATATG
1 TATGATATGCACATGATATG
73467967 TATGATATGCACATGAT
1 TATGATATGCACATGAT
73467984 GTATTCATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:73467944 original size:11 final size:11
Alignment explanation
Indices: 73467908--73467983 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
73467898 CAATATTGAT
*
73467908 ATGACATGCAC
1 ATGATATGCAC
*
73467919 ATGATATG--T
1 ATGATATGCAC
73467928 ATGATATGCAC
1 ATGATATGCAC
*
73467939 ATGATATGTAC
1 ATGATATGCAC
73467950 --GATATGCAC
1 ATGATATGCAC
*
73467959 ATGATATG--T
1 ATGATATGCAC
73467968 ATGATATGCAC
1 ATGATATGCAC
73467979 ATGAT
1 ATGAT
73467984 GTATTCATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
9 24 0.46
11 28 0.54
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:73469109 original size:5 final size:5
Alignment explanation
Indices: 73469099--73469127 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
73469089 CTTTTTGAAA
73469099 AAAAT AAAAT AAAA- AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
73469128 TTACCAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:73469113 original size:14 final size:14
Alignment explanation
Indices: 73469096--73469126 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
73469086 AAACTTTTTG
73469096 AAAAAAATAAAATA
1 AAAAAAATAAAATA
73469110 AAAAAAATAAAATA
1 AAAAAAATAAAATA
73469124 AAA
1 AAA
73469127 TTTACCAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (14 bp):
AAAAAAATAAAATA
Found at i:73473056 original size:29 final size:29
Alignment explanation
Indices: 73473024--73473099 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
73473014 CTGGAAATAT
* *
73473024 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
73473053 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
73473082 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
73473100 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:73480754 original size:29 final size:29
Alignment explanation
Indices: 73480722--73480797 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
73480712 CTGGAAATAT
* *
73480722 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
73480751 ATGGCACTATGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
73480780 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
73480798 AATCGAGTAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:73490241 original size:40 final size:40
Alignment explanation
Indices: 73490196--73490363 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
73490186 CGGAATATAA
73490196 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
73490236 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
73490276 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73490316 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
73490356 CCGGATAT
1 CCGGATAT
73490364 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73501645 original size:20 final size:21
Alignment explanation
Indices: 73501615--73501657 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
73501605 GTTGTAACCG
*
73501615 ATGATCAACTCGTAATCCTTA
1 ATGATCAACTCGTAATACTTA
73501636 ATGA-CAACTCGTAATACTTA
1 ATGATCAACTCGTAATACTTA
73501656 AT
1 AT
73501658 TAATTCTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (21 bp):
ATGATCAACTCGTAATACTTA
Found at i:73512172 original size:14 final size:15
Alignment explanation
Indices: 73512153--73512181 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73512143 TTGAAACATT
73512153 ATTGAG-GAGATAAA
1 ATTGAGCGAGATAAA
73512167 ATTGAGCGAGATAAA
1 ATTGAGCGAGATAAA
73512182 GTCTCATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.03, G:0.28, T:0.21
Consensus pattern (15 bp):
ATTGAGCGAGATAAA
Found at i:73515416 original size:19 final size:19
Alignment explanation
Indices: 73515392--73515428 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
73515382 GTTTGAAGTA
73515392 AAGTTACAGTGTTCAAACC
1 AAGTTACAGTGTTCAAACC
* *
73515411 AAGTTACGGTTTTCAAAC
1 AAGTTACAGTGTTCAAAC
73515429 ACATTAACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (19 bp):
AAGTTACAGTGTTCAAACC
Found at i:73515719 original size:25 final size:25
Alignment explanation
Indices: 73515673--73515721 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
73515663 CTATTTTTGA
* * *
73515673 TAGTATATCCTGACACTGCTATAGG
1 TAGTATATACTAACACTACTATAGG
*
73515698 TAGTATATACTAAGACTACTATAG
1 TAGTATATACTAACACTACTATAG
73515722 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (25 bp):
TAGTATATACTAACACTACTATAGG
Found at i:73526759 original size:7 final size:7
Alignment explanation
Indices: 73526747--73526773 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
73526737 GAAAAGGCCC
73526747 GATAAAT
1 GATAAAT
73526754 GATAAAT
1 GATAAAT
73526761 GATAAAT
1 GATAAAT
73526768 GATAAA
1 GATAAA
73526774 AATGTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (7 bp):
GATAAAT
Found at i:73527118 original size:57 final size:57
Alignment explanation
Indices: 73527004--73527127 Score: 157
Period size: 57 Copynumber: 2.2 Consensus size: 57
73526994 CATTACAGAA
* *
73527004 AGGATTTCGCCTGGACTGGTAATCCTGATATAAGCCCTGTTGAGCATATGTACAAAT
1 AGGATTTAGCCTGGACTGGTAATCCTAATATAAGCCCTGTTGAGCATATGTACAAAT
*
73527061 AGGATTTAGCCTGGA-TGGGTAATCCTAAT-TAAGCTCT-TGTGAGCATATGTTGA-AAAT
1 AGGATTTAGCCTGGACT-GGTAATCCTAATATAAGCCCTGT-TGAGCATATG-T-ACAAAT
73527118 AGGATTTAGC
1 AGGATTTAGC
73527128 TTGTACAAGT
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
55 1 0.02
56 18 0.30
57 40 0.67
58 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (57 bp):
AGGATTTAGCCTGGACTGGTAATCCTAATATAAGCCCTGTTGAGCATATGTACAAAT
Found at i:73527140 original size:57 final size:57
Alignment explanation
Indices: 73527004--73527143 Score: 142
Period size: 57 Copynumber: 2.5 Consensus size: 57
73526994 CATTACAGAA
* ** *
73527004 AGGATTTCGCCTGGACTGGTAATCCTGATATAAGCCCTGTTGAGCATATGTACAAAT
1 AGGATTTAGCCTGGACAAGTAATCCTAATATAAGCCCTGTTGAGCATATGTACAAAT
*** *
73527061 AGGATTTAGCCTGGATGGGTAATCCTAAT-TAAGCTCT-TGTGAGCATATGTTGA-AAAT
1 AGGATTTAGCCTGGACAAGTAATCCTAATATAAGCCCTGT-TGAGCATATG-T-ACAAAT
* *
73527118 AGGATTTAGCTTGTACAAGTAATCCT
1 AGGATTTAGCCTGGACAAGTAATCCT
73527144 GTTATATGAT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
55 1 0.01
56 17 0.24
57 51 0.73
58 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (57 bp):
AGGATTTAGCCTGGACAAGTAATCCTAATATAAGCCCTGTTGAGCATATGTACAAAT
Found at i:73528138 original size:15 final size:16
Alignment explanation
Indices: 73528114--73528146 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
73528104 GAGAAAGGTT
*
73528114 AAAAGAGTATGCTTAA
1 AAAAGAGTATGATTAA
73528130 AAAAG-GTATGATTAA
1 AAAAGAGTATGATTAA
73528145 AA
1 AA
73528147 GCATGAATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.55, C:0.03, G:0.18, T:0.24
Consensus pattern (16 bp):
AAAAGAGTATGATTAA
Found at i:73529167 original size:16 final size:17
Alignment explanation
Indices: 73529121--73529162 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
73529111 GTAGATAATC
73529121 GGAAGCTCATTTGGGTT
1 GGAAGCTCATTTGGGTT
*
73529138 GGAAGCTCATTTGGTTT
1 GGAAGCTCATTTGGGTT
73529155 GGAAGCTC
1 GGAAGCTC
73529163 GTTGGAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.19, C:0.14, G:0.33, T:0.33
Consensus pattern (17 bp):
GGAAGCTCATTTGGGTT
Found at i:73543190 original size:13 final size:13
Alignment explanation
Indices: 73543172--73543196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73543162 CCAATTACGT
73543172 CACACGGCCGTGG
1 CACACGGCCGTGG
73543185 CACACGGCCGTG
1 CACACGGCCGTG
73543197 TCCCTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.36, T:0.08
Consensus pattern (13 bp):
CACACGGCCGTGG
Found at i:73544046 original size:13 final size:13
Alignment explanation
Indices: 73544028--73544056 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
73544018 TTTAGTTTAA
73544028 TTAGTTAATTAGT
1 TTAGTTAATTAGT
73544041 TTAGTTAATTAGT
1 TTAGTTAATTAGT
73544054 TTA
1 TTA
73544057 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:73557195 original size:39 final size:40
Alignment explanation
Indices: 73557132--73557287 Score: 151
Period size: 40 Copynumber: 3.9 Consensus size: 40
73557122 CATGGAAATT
* * *
73557132 GAATGATATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-
1 GAATTATATCCGGGCTAAGA-CCCGAAGGCAATTGTGCTGA
*
73557171 GAATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCT-A
1 GAATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGA
*** *
73557210 GTGGCTACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GA
1 G-AATTATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGA
* *
73557250 GACATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 GA-ATTATATCCGGGCTAAGACCCGAAGGCAATTGTGC
73557288 ACGTGATTAT
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
39 36 0.38
40 57 0.60
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
GAATTATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGA
Found at i:73557301 original size:40 final size:40
Alignment explanation
Indices: 73557173--73557303 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
73557163 TTATGCTGGA
* * *
73557173 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
73557213 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
73557253 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
73557293 ATTATATCCGG
1 ATTATATCCGG
73557304 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:73565222 original size:40 final size:40
Alignment explanation
Indices: 73565137--73565287 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
73565127 AATTGAATGA
* * *
73565137 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
73565177 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73565218 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73565257 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73565288 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73565301 original size:40 final size:40
Alignment explanation
Indices: 73565173--73565303 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
73565163 TATGCTGGAA
* * *
73565173 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
73565213 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
73565253 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
73565293 ATTATATCCGG
1 ATTATATCCGG
73565304 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:73571369 original size:43 final size:43
Alignment explanation
Indices: 73571308--73571393 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
73571298 GTTACATGAA
*
73571308 TCGCATCCATTATAAACTCAGACCTCTCAACAAGCTTAGATGC
1 TCGCATCCATAATAAACTCAGACCTCTCAACAAGCTTAGATGC
* * * *
73571351 TCGCATCCATAATGAACTCATACCTCTCAACGAGCTTGGATGC
1 TCGCATCCATAATAAACTCAGACCTCTCAACAAGCTTAGATGC
73571394 CACTCAACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (43 bp):
TCGCATCCATAATAAACTCAGACCTCTCAACAAGCTTAGATGC
Found at i:73596852 original size:40 final size:40
Alignment explanation
Indices: 73596793--73596961 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
73596783 CGGGACTTTA
* * *
73596793 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
73596833 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
73596873 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
73596913 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
73596953 CCCGGATAT
1 CCCGGATAT
73596962 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:73600277 original size:15 final size:14
Alignment explanation
Indices: 73600253--73600283 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
73600243 ATTAGTAATA
73600253 AAGAAAAAGAAAGG
1 AAGAAAAAGAAAGG
73600267 AAGAGAAAAGAAAGG
1 AAGA-AAAAGAAAGG
73600282 AA
1 AA
73600284 AGGAAAGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAAAGG
Found at i:73600289 original size:15 final size:15
Alignment explanation
Indices: 73600252--73600289 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
73600242 AATTAGTAAT
*
73600252 AAAGAAAAAGAAAGG
1 AAAGGAAAAGAAAGG
73600267 -AAGAGAAAAGAAAGG
1 AAAG-GAAAAGAAAGG
73600282 AAAGGAAA
1 AAAGGAAA
73600290 GGATGGGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
14 3 0.15
15 14 0.70
16 3 0.15
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AAAGGAAAAGAAAGG
Found at i:73602635 original size:163 final size:164
Alignment explanation
Indices: 73602341--73602635 Score: 398
Period size: 163 Copynumber: 1.8 Consensus size: 164
73602331 TAAGTTGGTT
* * *
73602341 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTATTACGTGTACCAAATAGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATACTTAGGTAGCATGTGT
* * ** * *
73602406 AGTACTATGTGCAGGCTACTATACGTACCCGACAACTTCGATTACGTGTGTAGTACTAATTGCAG
66 AGTACTAAGTGCAGGCTACTATACGTACCAGACAACTTCGATTACAAGGGTAGTAATAATTGCAG
73602471 GCTACTACGTGTATCAGATGATTAGGTTAGATGG
131 GCTACTACGTGTATCAGATGATTAGGTTAGATGG
** * *
73602505 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCATATTCTT-GGTAGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATACTTAGGTAGCATGTGT
* * * *
73602569 AGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTC-AGTTACAAGGGTGGTAAT-ATGTGC
66 AGTACTAAGTGCAGGCTACTATACGTACCAGACAACTTCGA-TTACAAGGGTAGTAATAAT-TGC
73602632 AGGC
129 AGGC
73602636 AACCGTGTAT
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
162 3 0.03
163 63 0.56
164 46 0.41
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (164 bp):
TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAAATACTTAGGTAGCATGTGT
AGTACTAAGTGCAGGCTACTATACGTACCAGACAACTTCGATTACAAGGGTAGTAATAATTGCAG
GCTACTACGTGTATCAGATGATTAGGTTAGATGG
Found at i:73607038 original size:93 final size:93
Alignment explanation
Indices: 73606879--73607050 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
73606869 CACCCATAAG
* * *
73606879 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
73606944 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* *
73606972 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73607037 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
73607051 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:73607045 original size:46 final size:46
Alignment explanation
Indices: 73606872--73607047 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
73606862 TGTAACCCAC
* * * *
73606872 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
* * * * *
73606918 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCAT
*
73606968 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
*
73607011 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGA
73607048 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 60 0.56
47 26 0.24
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
Found at i:73610877 original size:29 final size:29
Alignment explanation
Indices: 73610843--73610974 Score: 97
Period size: 29 Copynumber: 4.6 Consensus size: 29
73610833 TACTCGATTT
* * *
73610843 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
73610872 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
73610901 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
73610930 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
73610959 CGCACACTAAGTGCCA
1 CGCACACTTAGTGCCA
73610975 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:73610935 original size:58 final size:58
Alignment explanation
Indices: 73610842--73610974 Score: 142
Period size: 58 Copynumber: 2.3 Consensus size: 58
73610832 ATACTCGATT
* * * *
73610842 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGC
* * * * * *
73610900 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACATAGTGCCATACACTTCCAGC
* *
73610958 ACGCACACTAAGTGCCA
1 TCGCACACTTAGTGCCA
73610975 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
57 4 0.06
58 58 0.94
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACATAGTGCCATACACTTCCAGC
Found at i:73618328 original size:29 final size:29
Alignment explanation
Indices: 73618294--73618425 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
73618284 TACTCGATTT
** * *
73618294 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
73618323 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
73618352 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
73618381 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
73618410 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
73618426 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:73619827 original size:14 final size:13
Alignment explanation
Indices: 73619789--73619828 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
73619779 CACACACATT
73619789 ATTTCTTTTTTTC
1 ATTTCTTTTTTTC
* *
73619802 TTTTTTTTTTTTC
1 ATTTCTTTTTTTC
73619815 ATTTCTTTATTTTC
1 ATTTCTTT-TTTTC
73619829 CTTCCATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
ATTTCTTTTTTTC
Found at i:73622213 original size:84 final size:82
Alignment explanation
Indices: 73621985--73622214 Score: 227
Period size: 84 Copynumber: 2.8 Consensus size: 82
73621975 CTTTTAATAG
* * *
73621985 TTCACCGGCAATT-TGCCTGCTAGGT-AATAACCTG-ATTTCATCATCGGCAATAAGCCTGCTAG
1 TTCACCGGC-ATTATGCCTGCTAGGTCAA-AGCCTGAAATTCATCACCGGC-ATAAGCCTGCTAG
* *
73622047 ACCTTTAAGTCTAATATCAT
63 ACCTTTAAATCCAATATCAT
* * * * * * *
73622067 TTCACCGGTATTATACCTGTTAGGCTCGAAGCCTGATAA-T-ATTCACCAGCTTAAAGCTTGCTA
1 TTCACCGGCATTATGCCTGCTAGG-TCAAAGCCTGA-AATTCA-TCACCGGCAT-AAGCCTGCTA
*
73622130 GACCTTTAAATCCGATATCAT
62 GACCTTTAAATCCAATATCAT
73622151 TTCACCGGCATTATGCCTGCTAGGATCAAAGCCTGAAATTCATCACCGGCATAAGGCCTGCTAG
1 TTCACCGGCATTATGCCTGCTAGG-TCAAAGCCTGAAATTCATCACCGGCATAA-GCCTGCTAG
73622215 GTTTGAAACC
Statistics
Matches: 117, Mismatches: 21, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
81 3 0.03
82 17 0.15
83 12 0.10
84 83 0.71
85 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (82 bp):
TTCACCGGCATTATGCCTGCTAGGTCAAAGCCTGAAATTCATCACCGGCATAAGCCTGCTAGACC
TTTAAATCCAATATCAT
Found at i:73632418 original size:24 final size:24
Alignment explanation
Indices: 73632386--73632472 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
73632376 AATCTCAAAT
73632386 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
73632410 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
73632434 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
73632458 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
73632473 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:73632438 original size:48 final size:48
Alignment explanation
Indices: 73632386--73632494 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
73632376 AATCTCAAAT
** *
73632386 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
73632434 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
73632482 GCACTATGTGTGC
1 GCACTATGTGTGC
73632495 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:73632485 original size:24 final size:24
Alignment explanation
Indices: 73632386--73632494 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
73632376 AATCTCAAAT
*
73632386 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
73632410 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
73632434 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
73632458 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
73632482 GCACTATGTGTGC
1 GCACTATGTGTGC
73632495 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:73640299 original size:24 final size:24
Alignment explanation
Indices: 73640267--73640353 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
73640257 AATCTCAAAT
73640267 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
73640291 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
73640315 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
73640339 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
73640354 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:73640319 original size:48 final size:48
Alignment explanation
Indices: 73640267--73640375 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
73640257 AATCTCAAAT
** *
73640267 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
73640315 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
73640363 GCACTATGTGTGC
1 GCACTATGTGTGC
73640376 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:73640366 original size:24 final size:24
Alignment explanation
Indices: 73640267--73640375 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
73640257 AATCTCAAAT
*
73640267 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
73640291 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
73640315 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
73640339 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
73640363 GCACTATGTGTGC
1 GCACTATGTGTGC
73640376 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:73661154 original size:40 final size:39
Alignment explanation
Indices: 73660989--73661172 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
73660979 AAATTGAATG
* * *
73660989 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
73661029 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
73661069 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
73661109 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
73661148 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
73661173 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:73661197 original size:80 final size:81
Alignment explanation
Indices: 73661029--73661217 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
73661019 GCTGGAAATT
* * * *
73661029 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
73661094 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
73661110 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
73661173 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
73661189 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
73661218 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:73669272 original size:40 final size:39
Alignment explanation
Indices: 73669107--73669290 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
73669097 AAATTGAATG
* * *
73669107 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
73669147 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
73669187 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
73669227 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
73669266 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
73669291 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:73669315 original size:80 final size:81
Alignment explanation
Indices: 73669147--73669335 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
73669137 GCTGGAAATT
* * * *
73669147 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
73669212 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
73669228 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
73669291 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
73669307 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
73669336 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:73671310 original size:22 final size:22
Alignment explanation
Indices: 73671278--73671329 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
73671268 CACTAGGAAC
*
73671278 TATGTGATCTGAGCTCTTGAGA
1 TATGTGATCTGAGCTCATGAGA
*
73671300 TATGTGGTCTGAGCTCATGAGA
1 TATGTGATCTGAGCTCATGAGA
73671322 TATGTGAT
1 TATGTGAT
73671330 ATATGTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.23, C:0.12, G:0.29, T:0.37
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATGAGA
Found at i:73677004 original size:25 final size:25
Alignment explanation
Indices: 73676975--73677025 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
73676965 CCCAATTTGG
73676975 TTGCATGCTAATTACTTAGTAAGTT
1 TTGCATGCTAATTACTTAGTAAGTT
73677000 TTGCATGCTAATTACTTAGTAAGTT
1 TTGCATGCTAATTACTTAGTAAGTT
73677025 T
1 T
73677026 ACTTTCCGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (25 bp):
TTGCATGCTAATTACTTAGTAAGTT
Found at i:73678177 original size:26 final size:26
Alignment explanation
Indices: 73678148--73678200 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
73678138 TATACATGCC
73678148 ATAGACTTAAGTATTTGAATACTTAT
1 ATAGACTTAAGTATTTGAATACTTAT
73678174 ATAGACTTAAGTATTTGAATACTTAT
1 ATAGACTTAAGTATTTGAATACTTAT
73678200 A
1 A
73678201 CCCGAAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (26 bp):
ATAGACTTAAGTATTTGAATACTTAT
Found at i:73681505 original size:40 final size:40
Alignment explanation
Indices: 73681460--73681626 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73681450 CGGAATATAA
73681460 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73681500 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73681540 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73681580 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73681619 CCGGATAT
1 CCGGATAT
73681627 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73689523 original size:40 final size:40
Alignment explanation
Indices: 73689478--73689645 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73689468 CGGAATATAA
73689478 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73689518 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73689558 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
73689598 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73689638 CCGGATAT
1 CCGGATAT
73689646 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73694126 original size:43 final size:43
Alignment explanation
Indices: 73694077--73694187 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 43
73694067 TCCTAGATAT
* *
73694077 GGTCTTACATGTTATCACATATCGATGCTACTATCCCACACAA
1 GGTCTTACATGTTATCACATATCGATGCCAATATCCCACACAA
* ** * * *
73694120 GGTCTTACACGAAATCACA-ATACAATGCCAATATCCCAGACAT
1 GGTCTTACATGTTATCACATAT-CGATGCCAATATCCCACACAA
*
73694163 TGTCTTACAT-TTAATCACATATCGA
1 GGTCTTACATGTT-ATCACATATCGA
73694188 GTTGATGCAA
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
42 2 0.04
43 48 0.92
44 2 0.04
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTTATCACATATCGATGCCAATATCCCACACAA
Found at i:73694997 original size:57 final size:57
Alignment explanation
Indices: 73694909--73695022 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
73694899 TACGCTAGGT
73694909 TAGTCTGAGAATTGAATAAACCATAGCTCTGATACCACTAAATATAACACCCCTTAC
1 TAGTCTGAGAATTGAATAAACCATAGCTCTGATACCACTAAATATAACACCCCTTAC
73694966 TAGTCTGAGAATTGAATAAACCATAGCTCTGATACCACTAAATATAACACCCCTTAC
1 TAGTCTGAGAATTGAATAAACCATAGCTCTGATACCACTAAATATAACACCCCTTAC
73695023 CCGTATCCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (57 bp):
TAGTCTGAGAATTGAATAAACCATAGCTCTGATACCACTAAATATAACACCCCTTAC
Found at i:73707658 original size:13 final size:13
Alignment explanation
Indices: 73707642--73707666 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73707632 GGGCACATGG
73707642 CCAAGACACACGA
1 CCAAGACACACGA
73707655 CCAAGACACACG
1 CCAAGACACACG
73707667 CCCGTAGGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.40, G:0.16, T:0.00
Consensus pattern (13 bp):
CCAAGACACACGA
Found at i:73721165 original size:99 final size:96
Alignment explanation
Indices: 73720987--73721166 Score: 256
Period size: 96 Copynumber: 1.8 Consensus size: 96
73720977 GGTATAATGT
* *
73720987 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAGAC
1 CGATACCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGAC
*
73721052 ATGGTCTTATACTGACTATCAAAATCAAGGC
66 ATGGTCTTACACTGACTATCAAAATCAAGGC
* *
73721083 CGATACCATGTCCCTGACATGGTCTTACACTAGCTC-TCACAT-ATTCGTGCCGATGCCATGTCC
1 CGATACCATGTCCCAGACATGGTCTTACACTAGCTCATC-CATCA--AGT--CGATGCCATGTCC
73721146 CAGACATGGTCTTACACTGAC
61 CAGACATGGTCTTACACTGAC
73721167 ACATCTCGTA
Statistics
Matches: 74, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
95 3 0.04
96 36 0.49
97 2 0.03
99 33 0.45
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (96 bp):
CGATACCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACTATCAAAATCAAGGC
Done.