Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 257 of 427
Found at i:73721220 original size:46 final size:47
Alignment explanation
Indices: 73720988--73721305 Score: 219
Period size: 46 Copynumber: 6.7 Consensus size: 47
73720978 GTATAATGTC
*
73720988 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATCAAGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGA-TCA
* * ** * * *
73721035 GATGCCATGTCCCAGACATGGTCTTATACTGAC-TATCAAAATCAAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGA-TCA
* * * * *
73721084 GATACCATGTCCCTGACATGGTCTTACACTAGCTCTCACATATTCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACAT-CTCGAT-CA
*
73721134 GATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-ATCA
* * *
73721180 GATG-CATGTCTCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-TCA
* * ** * *
73721226 GATG-CATGCCCCAGACAT-GTCTTACACTAGCTCT-TGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAT-CA
73721272 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT
73721306 CTCAAGTAAC
Statistics
Matches: 219, Mismatches: 34, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.05
45 17 0.08
46 57 0.26
47 47 0.21
48 19 0.09
49 29 0.13
50 33 0.15
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGATCA
Found at i:73721737 original size:52 final size:52
Alignment explanation
Indices: 73721659--73721760 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
73721649 CATGCTCATT
*
73721659 TAATCATACGGACTTACCTCAAATGCAACTTT-GGCTAATTATTCTCTTTTAG
1 TAATCACACGGACTTACCTCAAATGCAA-TTTCGGCTAATTATTCTCTTTTAG
73721711 TAATCACACGGACTTACCTCAAATGCAATTTCGGCTAATTATTCTCTTTT
1 TAATCACACGGACTTACCTCAAATGCAATTTCGGCTAATTATTCTCTTTT
73721761 TGTCTTTAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 3 0.06
52 45 0.94
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (52 bp):
TAATCACACGGACTTACCTCAAATGCAATTTCGGCTAATTATTCTCTTTTAG
Found at i:73724897 original size:30 final size:30
Alignment explanation
Indices: 73724842--73724972 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
73724832 ATAGTGAATC
*
73724842 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
73724871 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
73724901 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
73724929 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
73724959 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73724973 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:73724952 original size:58 final size:58
Alignment explanation
Indices: 73724841--73724972 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
73724831 TATAGTGAAT
* * * * *
73724841 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
73724900 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
73724958 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73724973 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:73732854 original size:30 final size:30
Alignment explanation
Indices: 73732799--73732929 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
73732789 ATAGTGAATC
*
73732799 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
73732828 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
73732858 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
73732886 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
73732916 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73732930 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:73732909 original size:58 final size:58
Alignment explanation
Indices: 73732798--73732929 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
73732788 TATAGTGAAT
* * * * *
73732798 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
73732857 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
73732915 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73732930 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:73736729 original size:18 final size:19
Alignment explanation
Indices: 73736696--73736731 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73736686 GCTTCATTCC
73736696 CACTCATCTCTCTCTCTTG
1 CACTCATCTCTCTCTCTTG
*
73736715 CACTCA-CTTTCTCTCTT
1 CACTCATCTCTCTCTCTT
73736732 CTATTCCCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.11, C:0.42, G:0.03, T:0.44
Consensus pattern (19 bp):
CACTCATCTCTCTCTCTTG
Found at i:73740278 original size:40 final size:40
Alignment explanation
Indices: 73740234--73740400 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
73740224 CGAAATATAA
73740234 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73740274 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73740314 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73740354 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73740393 CCGGATAT
1 CCGGATAT
73740401 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73748246 original size:39 final size:40
Alignment explanation
Indices: 73748203--73748368 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
73748193 CGGAATATAA
73748203 CCGGATATAATCACGT-GCACAAATGCCTTCGGGT-TTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73748242 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73748282 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
73748322 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73748361 CCGGATAT
1 CCGGATAT
73748369 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 1 0.01
39 42 0.40
40 63 0.59
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73753358 original size:42 final size:42
Alignment explanation
Indices: 73753311--73753399 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
73753301 ATTAAATAGG
73753311 TTGTTTGGGCTTATATAGAAGCCATGAAAATTCGTCTAGCCC
1 TTGTTTGGGCTTATATAGAAGCCATGAAAATTCGTCTAGCCC
73753353 TTGTTTGGGCTTATATAGAAGCCATGAAAATTCGTCTAGCCC
1 TTGTTTGGGCTTATATAGAAGCCATGAAAATTCGTCTAGCCC
73753395 TTGTT
1 TTGTT
73753400 GGAAAGAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (42 bp):
TTGTTTGGGCTTATATAGAAGCCATGAAAATTCGTCTAGCCC
Found at i:73757112 original size:51 final size:51
Alignment explanation
Indices: 73757036--73757137 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
73757026 GATGAATGAA
73757036 TGGTTCACCCAACACATTGGAACCAATCCGACTGTACAACAACCTCACCCC
1 TGGTTCACCCAACACATTGGAACCAATCCGACTGTACAACAACCTCACCCC
73757087 TGGTTCACCCAACACATTGGAACCAATCCGACTGTACAACAACCTCACCCC
1 TGGTTCACCCAACACATTGGAACCAATCCGACTGTACAACAACCTCACCCC
73757138 CCGGTTAATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.31, C:0.39, G:0.12, T:0.18
Consensus pattern (51 bp):
TGGTTCACCCAACACATTGGAACCAATCCGACTGTACAACAACCTCACCCC
Found at i:73764307 original size:39 final size:40
Alignment explanation
Indices: 73764250--73764465 Score: 298
Period size: 39 Copynumber: 5.5 Consensus size: 40
73764240 GGGATGATAA
* *
73764250 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
73764290 CC-GGCTAAGCCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73764329 CCGAGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73764369 CCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73764408 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
73764448 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73764466 TACTTAGTTT
Statistics
Matches: 158, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 87 0.55
40 71 0.45
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73764387 original size:79 final size:79
Alignment explanation
Indices: 73764246--73764465 Score: 302
Period size: 79 Copynumber: 2.8 Consensus size: 79
73764236 TATTGGGATG
* * * *
73764246 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGCTAAGCCCCGAAGGCA
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGCTAAGTCCCGAAGGCA
*
73764310 TTTGTGTGAGTTACT
65 TTTGTGCGAGTTACT
* *
73764325 ATATCCGAGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC-AAGGCA
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCA
73764389 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * *
73764404 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGGCTAAATCCCGAAGG
1 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGCTAAGTCCCGAAGG
73764466 TACTTAGTTT
Statistics
Matches: 125, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 12 0.10
79 102 0.82
80 11 0.09
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:73774340 original size:43 final size:43
Alignment explanation
Indices: 73774293--73774401 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 43
73774283 CCCCGATTGA
* **
73774293 GATTTACGTATAAGACCATGTCTGGGACATCGGCATC-ATATCT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-T
* *
73774336 GATTT-TGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATT
1 GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
* * *
73774378 GAATTACATGTAAGACCACGTCTG
1 GATTTACGTGTAAGACCATGTCTG
73774402 AGATGTCGGC
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 31 0.57
43 23 0.43
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT
Found at i:73777423 original size:21 final size:21
Alignment explanation
Indices: 73777399--73777468 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
73777389 TGATCTGAAC
73777399 TCATTGAATTGTGGTCTGAGT
1 TCATTGAATTGTGGTCTGAGT
* *
73777420 TCA-TGATATATGTGATATCTGAGC
1 TCATTGA-AT-TGTG--GTCTGAGT
* *
73777444 TGATTGAGTTGTGGTCTGAGT
1 TCATTGAATTGTGGTCTGAGT
73777465 TCAT
1 TCAT
73777469 GATGTATGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 14 0.38
22 4 0.11
23 4 0.11
24 9 0.24
25 3 0.08
ACGTcount: A:0.21, C:0.10, G:0.27, T:0.41
Consensus pattern (21 bp):
TCATTGAATTGTGGTCTGAGT
Found at i:73777450 original size:45 final size:45
Alignment explanation
Indices: 73777391--73777479 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
73777381 GAACTATGTG
73777391 ATCTGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGAT
1 ATCTGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGAT
* * * *
73777436 ATCTGAGCTGATTGAGTTGTGGTCTGAGTTCATGATGTATGTGA
1 ATCTGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGA
73777480 CACATGTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.10, G:0.27, T:0.39
Consensus pattern (45 bp):
ATCTGAACTCATTGAATTGTGGTCTGAGTTCATGATATATGTGAT
Found at i:73781410 original size:36 final size:36
Alignment explanation
Indices: 73781363--73781436 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
73781353 GAGAAGGCAG
*
73781363 AGCATCAAGTTCCTTCAAGTCTTCTTTAGCCTATCT
1 AGCATCAAGTTCCTTCAAGTCGTCTTTAGCCTATCT
*
73781399 AGCATCAAGTTCCTTCAGGTCGTCTTTAGCCTATCT
1 AGCATCAAGTTCCTTCAAGTCGTCTTTAGCCTATCT
73781435 AG
1 AG
73781437 ATTCCGCAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (36 bp):
AGCATCAAGTTCCTTCAAGTCGTCTTTAGCCTATCT
Found at i:73787619 original size:20 final size:20
Alignment explanation
Indices: 73787594--73787631 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
73787584 TGGGTTAGTG
*
73787594 ATTTAATATATATAATTATT
1 ATTTAACATATATAATTATT
73787614 ATTTAACATATATAATTA
1 ATTTAACATATATAATTA
73787632 ATATAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTAACATATATAATTATT
Found at i:73791164 original size:13 final size:13
Alignment explanation
Indices: 73791146--73791170 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73791136 CCTAATAGGT
73791146 AATTGAACTTGAA
1 AATTGAACTTGAA
73791159 AATTGAACTTGA
1 AATTGAACTTGA
73791171 GATTGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (13 bp):
AATTGAACTTGAA
Found at i:73795845 original size:15 final size:16
Alignment explanation
Indices: 73795818--73795848 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
73795808 TTAAGCTAAA
73795818 GAAAGTAAATGAAATG
1 GAAAGTAAATGAAATG
73795834 GAAAGT-AATGAAATG
1 GAAAGTAAATGAAATG
73795849 CAAATGAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (16 bp):
GAAAGTAAATGAAATG
Found at i:73796324 original size:15 final size:16
Alignment explanation
Indices: 73796304--73796333 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73796294 TGGTGCCTTG
73796304 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
73796319 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
73796334 AACATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:73798801 original size:15 final size:14
Alignment explanation
Indices: 73798778--73798813 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
73798768 CACATTTCAC
*
73798778 TATTTTGTCTTTTG
1 TATTTTGTCTTTTA
73798792 TATTTATGTCTTTTA
1 TATTT-TGTCTTTTA
73798807 TATTTTG
1 TATTTTG
73798814 CATGCATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (14 bp):
TATTTTGTCTTTTA
Found at i:73804439 original size:46 final size:47
Alignment explanation
Indices: 73804250--73804460 Score: 164
Period size: 46 Copynumber: 4.5 Consensus size: 47
73804240 TGTGTGAGCT
* ** *
73804250 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATGATAGCC
* * * ** ** ** *
73804296 AGTGTAAAATCATGTCCGGGACATGGCATCAGC-ATTGAGACAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAGAGATGATAGCC
* **
73804344 AGTGTAAGACATGTCTGGGACATGTATCGGCCT-C-GAGGCG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACAGAGATGAT-AGCC
*
73804390 AGTGTAAGACATGTCTGGGACATGCATCGGCTA-AGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATGATAGCC
*
73804436 AGTGTAAGACCATGTCTAGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
73804461 GCATATACTT
Statistics
Matches: 129, Mismatches: 26, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
45 2 0.02
46 64 0.50
47 43 0.33
48 20 0.16
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAGAGATGATAGCC
Found at i:73804506 original size:140 final size:140
Alignment explanation
Indices: 73804250--73804507 Score: 308
Period size: 140 Copynumber: 1.8 Consensus size: 140
73804240 TGTGTGAGCT
** * *
73804250 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAAATCATGTCCGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCCAGTGTAAAACCATGTCCAG
* * * * **
73804315 GACATGGCATCAGCATTGAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGA
66 GACATGGCATCAACATTAAGACAAGAGCCAGTGTAAGACATGTCTAAGACATGTATCGGCCTCGA
73804380 GGCGTAAGCC
131 GGCGTAAGCC
* * * * *
73804390 AGTGTAAGACATGTCTGGGACATGCATCGGCTA-AGAGATGATAGTCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACA-AGATGAGAGCCAGTGTAAAACCATGTCCA
*
73804454 GGACATGGCAT-ATAC-TTAAG-CTATGAGCCAGTGTAAGACTATGTCTAAGACATG
65 GGACATGGCATCA-ACATTAAGAC-AAGAGCCAGTGTAAGAC-ATGTCTAAGACATG
73804508 GTATTGGCAC
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.20
140 77 0.79
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAGAGCCAGTGTAAAACCATGTCCAG
GACATGGCATCAACATTAAGACAAGAGCCAGTGTAAGACATGTCTAAGACATGTATCGGCCTCGA
GGCGTAAGCC
Found at i:73811979 original size:46 final size:46
Alignment explanation
Indices: 73811841--73812109 Score: 172
Period size: 46 Copynumber: 5.7 Consensus size: 46
73811831 TCACTTGTGT
* * **
73811841 GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCC-ACATTATAA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACA-GACGA
* ** * **
73811887 GAGTTAGTGTAAGACCATGTCCAGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTACAGACGA
* *
73811935 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCCAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACAGACG-A
* * * * *
73811982 -AGCCAATGTAAGACATGTCTGGGACATGCATTGG-CTAAGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-ACAGACGA
* * ** ** *
73812027 TAG-TCAGTGCAAGACCATGTCTGGGACATGGCATC-TACTTGAG-CTA
1 GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTACAGACGA
*
73812073 TGAGCCAGTGTAAGACCATGTCTGGGACATGACATCG
1 -GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCG
73812110 ACACTTAACC
Statistics
Matches: 174, Mismatches: 35, Indels: 26
0.74 0.15 0.11
Matches are distributed among these distances:
45 3 0.02
46 71 0.41
47 71 0.41
48 28 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTACAGACGA
Found at i:73812100 original size:140 final size:141
Alignment explanation
Indices: 73811848--73812109 Score: 334
Period size: 140 Copynumber: 1.9 Consensus size: 141
73811838 TGTGAGCAAG
** * *
73811848 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGTTAGTGTAAGACCATGTCCAGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATAAGAGTCAGTGCAAGACCATGTCCAGGA
* * *
73811913 CATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCTCCAG
66 CATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGACATCGGCCTCCAG
73811977 ACGTAAGCCAA
131 ACGTAAGCCAA
* * * * **
73811988 TGTAAGACATGTCTGGGACATGCATTGGCTA-AGAGATGATAGTCAGTGCAAGACCATGTCTGGG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACA-AGATAAGAGTCAGTGCAAGACCATGTCCAGG
* *
73812052 ACATGGCATCTAC-TTGAG-CTATGAGCCAGTGTAAGACCATGTCTGGGACATGACATCG
65 ACATGGCATCGACATTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACATGACATCG
73812110 ACACTTAACC
Statistics
Matches: 103, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
138 2 0.02
139 18 0.17
140 78 0.76
141 5 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACAAGATAAGAGTCAGTGCAAGACCATGTCCAGGA
CATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGACATCGGCCTCCAG
ACGTAAGCCAA
Found at i:73813144 original size:20 final size:21
Alignment explanation
Indices: 73813086--73813144 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
73813076 TGTGTGAAGG
73813086 ACACGGGCGTGTTACCCTTCC
1 ACACGGGCGTGTTACCCTTCC
73813107 ACACGGGCGTGTTACCCTTCC
1 ACACGGGCGTGTTACCCTTCC
73813128 ACACGGGCGTG-TACCCT
1 ACACGGGCGTGTTACCCT
73813145 GTTTTAAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 6 0.16
21 32 0.84
ACGTcount: A:0.15, C:0.37, G:0.25, T:0.22
Consensus pattern (21 bp):
ACACGGGCGTGTTACCCTTCC
Found at i:73813891 original size:19 final size:19
Alignment explanation
Indices: 73813853--73813891 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
73813843 CAAACCCTCA
* *
73813853 AAAATTTTTATTTTCCCCC
1 AAAATTTTTACTCTCCCCC
*
73813872 AAAATTTTTACTCTCTCCC
1 AAAATTTTTACTCTCCCCC
73813891 A
1 A
73813892 CTTTTCCCCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATTTTTACTCTCCCCC
Found at i:73815042 original size:23 final size:23
Alignment explanation
Indices: 73815015--73815060 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
73815005 TTTCTACTTG
73815015 TAGTCCCTCTTCGCTTTCGCATA
1 TAGTCCCTCTTCGCTTTCGCATA
73815038 TAGTCCCTCTTCGCTTTCGCATA
1 TAGTCCCTCTTCGCTTTCGCATA
73815061 ATTGAGTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.35, G:0.13, T:0.39
Consensus pattern (23 bp):
TAGTCCCTCTTCGCTTTCGCATA
Found at i:73817843 original size:6 final size:6
Alignment explanation
Indices: 73817832--73817858 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
73817822 TGTAGTTCCC
73817832 TTTTTG TTTTTG TTTTTG TTTTTG TTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTT
73817859 CTTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:73820181 original size:36 final size:37
Alignment explanation
Indices: 73820139--73820214 Score: 111
Period size: 36 Copynumber: 2.1 Consensus size: 37
73820129 TTGTAATTAA
*
73820139 AATAAATTATGTTATTCGGAAG-TATTTTAAT-TTTTT
1 AATAAATTATGTTATTC-AAAGATATTTTAATCTTTTT
*
73820175 AATAAATTATTTTATTCAAAGATATTTTAATCTTTTT
1 AATAAATTATGTTATTCAAAGATATTTTAATCTTTTT
73820212 AAT
1 AAT
73820215 TTAAAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
35 3 0.08
36 25 0.69
37 8 0.22
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.53
Consensus pattern (37 bp):
AATAAATTATGTTATTCAAAGATATTTTAATCTTTTT
Found at i:73824416 original size:13 final size:13
Alignment explanation
Indices: 73824398--73824422 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73824388 GGTTTGTTTA
73824398 TTAAACTAATTAT
1 TTAAACTAATTAT
73824411 TTAAACTAATTA
1 TTAAACTAATTA
73824423 ACAGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:73827346 original size:6 final size:6
Alignment explanation
Indices: 73827337--73827400 Score: 69
Period size: 6 Copynumber: 10.8 Consensus size: 6
73827327 TTCAAAATTG
* * *
73827337 AAATGA AAATAA AAATCA AAAGAA AAATAA AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
73827384 AACTAA ATAA-AA AAATA
1 AAATAA A-AATAA AAATA
73827401 GGAGGATTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
5 7 0.15
6 40 0.83
7 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:73827397 original size:17 final size:17
Alignment explanation
Indices: 73827337--73827396 Score: 77
Period size: 17 Copynumber: 3.5 Consensus size: 17
73827327 TTCAAAATTG
*
73827337 AAATGAAAATAAAAATCA
1 AAATAAAAATAAAAAT-A
*
73827355 AAAGAAAAATAAAAATA
1 AAATAAAAATAAAAATA
*
73827372 AAATAAAAATAAAACT-
1 AAATAAAAATAAAAATA
73827388 AAATAAAAA
1 AAATAAAAA
73827397 AATAGGAGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
16 9 0.24
17 15 0.39
18 14 0.37
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.15
Consensus pattern (17 bp):
AAATAAAAATAAAAATA
Found at i:73832707 original size:13 final size:13
Alignment explanation
Indices: 73832689--73832713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73832679 GGTTTGTTTA
73832689 TTAAACTAATTAT
1 TTAAACTAATTAT
73832702 TTAAACTAATTA
1 TTAAACTAATTA
73832714 ACAGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:73837448 original size:13 final size:13
Alignment explanation
Indices: 73837428--73837457 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
73837418 ATCTATTCGA
73837428 TTTAAAAACTAAAT
1 TTTAAAAA-TAAAT
73837442 TTTAAAAATAAAT
1 TTTAAAAATAAAT
73837455 TTT
1 TTT
73837458 CAACTCCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTAAAAATAAAT
Found at i:73839151 original size:33 final size:31
Alignment explanation
Indices: 73839110--73839184 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
73839100 GTTAATCTAA
*
73839110 TATGTATATAATTGAATCAAAATAAAAATTT
1 TATGTATATAATTGAACCAAAATAAAAATTT
* *
73839141 AGTATGTATAT--TTGAACCAAAATTAAAGTTT
1 --TATGTATATAATTGAACCAAAATAAAAATTT
*
73839172 CATGTATATAATT
1 TATGTATATAATT
73839185 ACACTAAATC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
29 8 0.22
31 19 0.53
33 9 0.25
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.40
Consensus pattern (31 bp):
TATGTATATAATTGAACCAAAATAAAAATTT
Found at i:73840297 original size:2 final size:2
Alignment explanation
Indices: 73840290--73840324 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
73840280 CAACGGAAAC
73840290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73840325 GATTTATCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73842814 original size:24 final size:24
Alignment explanation
Indices: 73842782--73842842 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
73842772 GATCACATTA
73842782 CATACATCACATAATATCATGAGCT
1 CATA-ATCACATAATATCATGAGCT
73842807 CATAATCACATAATATCATGAGCT
1 CATAATCACATAATATCATGAGCT
73842831 CATAATCACATA
1 CATAATCACATA
73842843 GTTCCTAGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 32 0.89
25 4 0.11
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.28
Consensus pattern (24 bp):
CATAATCACATAATATCATGAGCT
Found at i:73846625 original size:13 final size:12
Alignment explanation
Indices: 73846589--73846626 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
73846579 TCGCCCGTAT
73846589 TAATTTTTAATA
1 TAATTTTTAATA
*
73846601 TTATTTTT-ATA
1 TAATTTTTAATA
73846612 TAATTTTTAAATA
1 TAATTTTT-AATA
73846625 TA
1 TA
73846627 TATAATACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
11 10 0.45
12 7 0.32
13 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TAATTTTTAATA
Found at i:73848492 original size:40 final size:39
Alignment explanation
Indices: 73848421--73848553 Score: 133
Period size: 39 Copynumber: 3.3 Consensus size: 39
73848411 AAATAGGTTT
* * * * *
73848421 TTAGCGGCGTTTGAATAGAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGTGTTTTAA-A-AAAACGCCGCTAAAGATCGAGCA
73848462 TTAGCGGTGTTTCTAAAAAAACGCCGCTAAAGATCGAGCA
1 TTAGCGGTGTTT-TAAAAAAACGCCGCTAAAGATCGAGCA
* ** *
73848502 TTAGCGGCT-TTTTAAGAAAGTGTCGCTAAAGATCGAGCA
1 TTAGCGG-TGTTTTAAAAAAACGCCGCTAAAGATCGAGCA
*
73848541 TTAGCGGCGTTTT
1 TTAGCGGTGTTTT
73848554 TAAGAAAGTT
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
39 34 0.43
40 30 0.38
41 13 0.16
42 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (39 bp):
TTAGCGGTGTTTTAAAAAAACGCCGCTAAAGATCGAGCA
Found at i:73848535 original size:39 final size:40
Alignment explanation
Indices: 73848448--73848562 Score: 151
Period size: 39 Copynumber: 2.9 Consensus size: 40
73848438 GAAAACGCCA
* * * * * ** *
73848448 CTAAAAATCAAGCATTAGCGGTGTTTCTAAAAAAACGCCG
1 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGTGTCG
73848488 CTAAAGATCGAGCATTAGCGGC-TTTTTAAGAAAGTGTCG
1 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGTGTCG
73848527 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGT
1 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGT
73848563 TCCGCTATGG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
39 34 0.52
40 32 0.48
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (40 bp):
CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGTGTCG
Found at i:73848569 original size:40 final size:40
Alignment explanation
Indices: 73848448--73848569 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 40
73848438 GAAAACGCCA
* * * * * ***
73848448 CTAAAAATCAAGCATTAGCGGTGTTTCTAAAAAAACGCCG
1 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGTTCCG
73848488 CTAAAGATCGAGCATTAGCGGC-TTTTTAAGAAAGTGT-CG
1 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGT-TCCG
73848527 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGTTCCG
1 CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGTTCCG
73848567 CTA
1 CTA
73848570 TGGGTTGACC
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.48
40 37 0.52
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (40 bp):
CTAAAGATCGAGCATTAGCGGCGTTTTTAAGAAAGTTCCG
Found at i:73849167 original size:11 final size:11
Alignment explanation
Indices: 73849147--73849181 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
73849137 TTAAATAAGG
*
73849147 TTTTATTTTTA
1 TTTTATTTTGA
73849158 TTTTGATTTTGA
1 TTTT-ATTTTGA
73849170 TTTTATTTTGA
1 TTTTATTTTGA
73849181 T
1 T
73849182 CATATCTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (11 bp):
TTTTATTTTGA
Found at i:73849529 original size:14 final size:14
Alignment explanation
Indices: 73849507--73849551 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
73849497 TAAACCCTTA
*
73849507 AAACTCCAAGCCCT
1 AAACCCCAAGCCCT
73849521 AAACCCCAA-CCCTT
1 AAACCCCAAGCCC-T
*
73849535 AAACCCCAAGCCTT
1 AAACCCCAAGCCCT
73849549 AAA
1 AAA
73849552 ACTAACCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 3 0.11
14 22 0.81
15 2 0.07
ACGTcount: A:0.40, C:0.42, G:0.04, T:0.13
Consensus pattern (14 bp):
AAACCCCAAGCCCT
Found at i:73849608 original size:14 final size:14
Alignment explanation
Indices: 73849591--73849643 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
73849581 CGTAAATCCC
73849591 AAACCCTAAACTAT
1 AAACCCTAAACTAT
*
73849605 AAACCATAAA-TCAT
1 AAACCCTAAACT-AT
* *
73849619 AAACTCTTAAACTGT
1 AAAC-CCTAAACTAT
73849634 AAACCCTAAA
1 AAACCCTAAA
73849644 ATCTAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
13 1 0.03
14 20 0.62
15 10 0.31
16 1 0.03
ACGTcount: A:0.51, C:0.25, G:0.02, T:0.23
Consensus pattern (14 bp):
AAACCCTAAACTAT
Found at i:73849614 original size:28 final size:28
Alignment explanation
Indices: 73849562--73849643 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 28
73849552 ACTAACCTTT
* * * *
73849562 AAACCCATAAACTATAGATCGTAAATCCC
1 AAACCC-TAAACTATAAACCATAAATCAC
*
73849591 AAACCCTAAACTATAAACCATAAATCAT
1 AAACCCTAAACTATAAACCATAAATCAC
* * *
73849619 AAACTCTTAAACTGTAAACCCTAAA
1 AAAC-CCTAAACTATAAACCATAAA
73849644 ATCTAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 21 0.48
29 23 0.52
ACGTcount: A:0.49, C:0.26, G:0.04, T:0.22
Consensus pattern (28 bp):
AAACCCTAAACTATAAACCATAAATCAC
Found at i:73849724 original size:21 final size:21
Alignment explanation
Indices: 73849691--73849731 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
73849681 ATATACGTTC
*
73849691 ATGGTCTAGGATTTAGGGTTT
1 ATGGTCTAAGATTTAGGGTTT
* *
73849712 ATGGTTTAAGATTTGGGGTT
1 ATGGTCTAAGATTTAGGGTT
73849732 CAATTTTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.02, G:0.34, T:0.44
Consensus pattern (21 bp):
ATGGTCTAAGATTTAGGGTTT
Found at i:73850139 original size:7 final size:7
Alignment explanation
Indices: 73850126--73850161 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
73850116 AATCTTCAAA
73850126 AAAAAAT
1 AAAAAAT
*
73850133 TAAAAAT
1 AAAAAAT
73850140 AAAAAAT
1 AAAAAAT
73850147 AAAAAATT
1 AAAAAA-T
73850155 AAAAAAT
1 AAAAAAT
73850162 TTTAAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (7 bp):
AAAAAAT
Found at i:73850143 original size:14 final size:14
Alignment explanation
Indices: 73850126--73850184 Score: 64
Period size: 15 Copynumber: 4.0 Consensus size: 14
73850116 AATCTTCAAA
73850126 AAAAAATTAAAAAT
1 AAAAAATTAAAAAT
*
73850140 AAAAAATAAAAAATT
1 AAAAAATTAAAAA-T
*
73850155 AAAAAATTTTAAAAT
1 AAAAAA-TTAAAAAT
*
73850170 AAAAAGCTTAAAAAT
1 AAAAA-ATTAAAAAT
73850185 TTAATATTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
14 12 0.32
15 20 0.54
16 5 0.14
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (14 bp):
AAAAAATTAAAAAT
Found at i:73850173 original size:21 final size:21
Alignment explanation
Indices: 73850105--73850173 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
73850095 TGTTAATTTA
73850105 AAAATTATAAAAATCTTCAAAAA-
1 AAAATTA-AAAAAT-TT-AAAAAT
*
73850128 AAAATT-AAAAA-TAAAAAAT
1 AAAATTAAAAAATTTAAAAAT
*
73850147 AAAAAATTAAAAAATTTTAAAAT
1 --AAAATTAAAAAATTTAAAAAT
73850170 AAAA
1 AAAA
73850174 AGCTTAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
18 5 0.13
19 1 0.03
21 15 0.39
22 5 0.13
23 12 0.32
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATTAAAAAATTTAAAAAT
Found at i:73850186 original size:23 final size:23
Alignment explanation
Indices: 73850104--73850183 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
73850094 ATGTTAATTT
* *
73850104 AAAAATTATAAAAATCTTCAAA-A
1 AAAAATTA-AAAAATTTTAAAATA
**
73850127 AAAAATT-AAAAA-TAAAAAATA
1 AAAAATTAAAAAATTTTAAAATA
73850148 AAAAATTAAAAAATTTTAAAATA
1 AAAAATTAAAAAATTTTAAAATA
*
73850171 AAAAGCTTAAAAA
1 AAAA-ATTAAAAA
73850184 TTTAATATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
20 3 0.07
21 13 0.28
22 5 0.11
23 18 0.39
24 7 0.15
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (23 bp):
AAAAATTAAAAAATTTTAAAATA
Found at i:73856540 original size:2 final size:2
Alignment explanation
Indices: 73856533--73856562 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
73856523 CACATATCAA
73856533 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73856563 TAGACTAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73861704 original size:2 final size:2
Alignment explanation
Indices: 73861697--73861725 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
73861687 ACTGAATTAC
73861697 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73861726 CCTATCTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73863051 original size:45 final size:41
Alignment explanation
Indices: 73862947--73863068 Score: 136
Period size: 41 Copynumber: 2.9 Consensus size: 41
73862937 CACATATATT
* * * *
73862947 ATACAATGCCATCATCCCAGACAGGGTCTTACACGAATCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACGAATCAA
* * *
73862988 ATACGATGCCGATGTCCCAGACATGGTCTTACACGTAACTACAT
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACG-AA-T-CAA
*
73863032 ATACCGATGCCAACGTCCCAGACGTGGTCTTACACGA
1 ATA-CGATGCCAACGTCCCAGACATGGTCTTACACGA
73863069 GAACACATAT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 29 0.43
42 2 0.03
43 1 0.01
44 6 0.09
45 29 0.43
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (41 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACGAATCAA
Found at i:73863077 original size:45 final size:43
Alignment explanation
Indices: 73862946--73863078 Score: 137
Period size: 45 Copynumber: 3.1 Consensus size: 43
73862936 TCACATATAT
* * * *
73862946 TATACAATGCCATCATCCCAGACAG-GGTCTTACACGAATCA-A
1 TATACGATGCCAACGTCCCAGAC-GTGGTCTTACACGAAACACA
* * * *
73862988 -ATACGATGCCGATGTCCCAGACATGGTCTTACACGTAACTACA
1 TATACGATGCCAACGTCCCAGACGTGGTCTTACACGAAAC-ACA
73863031 TATACCGATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACA
1 TATA-CGATGCCAACGTCCCAGACGTGGTCTTACACGA-AACACA
73863076 TAT
1 TAT
73863079 CAGAAATTCT
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
41 30 0.41
42 1 0.01
43 1 0.01
44 3 0.04
45 35 0.48
46 3 0.04
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
TATACGATGCCAACGTCCCAGACGTGGTCTTACACGAAACACA
Found at i:73884395 original size:24 final size:24
Alignment explanation
Indices: 73884363--73884449 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
73884353 AATCTCAAAT
73884363 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
73884387 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
73884411 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
73884435 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
73884450 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:73884415 original size:48 final size:48
Alignment explanation
Indices: 73884363--73884471 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
73884353 AATCTCAAAT
** *
73884363 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
73884411 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
73884459 GCACTATGTGTGC
1 GCACTATGTGTGC
73884472 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:73884462 original size:24 final size:24
Alignment explanation
Indices: 73884363--73884471 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
73884353 AATCTCAAAT
*
73884363 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
73884387 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
73884411 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
73884435 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
73884459 GCACTATGTGTGC
1 GCACTATGTGTGC
73884472 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:73892255 original size:24 final size:24
Alignment explanation
Indices: 73892223--73892309 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
73892213 AATCTCAAAT
73892223 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
73892247 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
73892271 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
73892295 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
73892310 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:73892275 original size:48 final size:48
Alignment explanation
Indices: 73892223--73892331 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
73892213 AATCTCAAAT
** *
73892223 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
73892271 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
73892319 GCACTATGTGTGC
1 GCACTATGTGTGC
73892332 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:73892322 original size:24 final size:24
Alignment explanation
Indices: 73892223--73892331 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
73892213 AATCTCAAAT
*
73892223 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
73892247 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
73892271 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
73892295 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
73892319 GCACTATGTGTGC
1 GCACTATGTGTGC
73892332 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:73899753 original size:39 final size:39
Alignment explanation
Indices: 73899699--73899940 Score: 367
Period size: 39 Copynumber: 6.2 Consensus size: 39
73899689 GAAATGTGTA
73899699 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * *
73899738 TGGAAATATATCCGGGCCAAAGACCTGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
73899777 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
73899816 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* *
73899855 TGGAAATATATCCGGGCCAAAGACCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * *
73899894 TGGAAATGTATCTGGGCTAAAGTCCCGCAAGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
73899933 TGGTAATA
1 TGGAAATA
73899941 AAATTTCGGG
Statistics
Matches: 183, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 183 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:73899905 original size:117 final size:117
Alignment explanation
Indices: 73899699--73899940 Score: 421
Period size: 117 Copynumber: 2.1 Consensus size: 117
73899689 GAAATGTGTA
*
73899699 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCT
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
*
73899764 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
66 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
* *
73899816 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
* *
73899881 GCAGGCTTCGTGCTGGAAATGTATCTGGGCTAAAGTCCCGCAAGCTTTGTGC
66 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
*
73899933 TGGTAATA
1 TGGAAATA
73899941 AAATTTCGGG
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 117 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (117 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTTGTGCTGGAAATATATCCGGGCCAAAGACCC
GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTTGTGC
Found at i:73907566 original size:16 final size:15
Alignment explanation
Indices: 73907545--73907574 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
73907535 TTAAAATTAT
73907545 AAATAATATATATTTG
1 AAATAATAT-TATTTG
73907561 AAATAATATTATTT
1 AAATAATATTATTT
73907575 AAAAAATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AAATAATATTATTTG
Found at i:73907802 original size:19 final size:22
Alignment explanation
Indices: 73907778--73907826 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
73907768 TTGTTTCACA
73907778 GAAAATAAC-T-T-GGTCAACG
1 GAAAATAACTTATAGGTCAACG
*
73907797 GAAAATGACTTATAGGTCAACG
1 GAAAATAACTTATAGGTCAACG
*
73907819 TAAAATAA
1 GAAAATAA
73907827 GTCATTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.33
20 1 0.04
21 1 0.04
22 14 0.58
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.22
Consensus pattern (22 bp):
GAAAATAACTTATAGGTCAACG
Found at i:73907964 original size:25 final size:26
Alignment explanation
Indices: 73907936--73907991 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
73907926 ACTTAAATCA
73907936 AATTTAATATTATTA-TATTAAAAAT
1 AATTTAATATTATTATTATTAAAAAT
* * *
73907961 AATTT-TTATTTTTATTTTTAAAAAT
1 AATTTAATATTATTATTATTAAAAAT
73907986 -ATTTAA
1 AATTTAA
73907992 AAATATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
AATTTAATATTATTATTATTAAAAAT
Found at i:73908015 original size:13 final size:14
Alignment explanation
Indices: 73907997--73908025 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
73907987 TTTAAAAATA
73907997 TTAAAATATTA-AT
1 TTAAAATATTATAT
73908010 TTAAAATATTATAT
1 TTAAAATATTATAT
73908024 TT
1 TT
73908026 TTTAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTAAAATATTATAT
Found at i:73908114 original size:22 final size:20
Alignment explanation
Indices: 73908072--73908122 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
73908062 ATTTAGTCAT
73908072 TTAATAAATTATTAATATAA
1 TTAATAAATTATTAATATAA
73908092 TTAATATAATTTATT-AT-T--
1 TTAATA-AA-TTATTAATATAA
73908110 TTAATAAATTATT
1 TTAATAAATTATT
73908123 TGATATTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.17
17 2 0.07
18 6 0.21
20 7 0.24
21 4 0.14
22 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATAAATTATTAATATAA
Found at i:73908121 original size:16 final size:18
Alignment explanation
Indices: 73908070--73908122 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 18
73908060 ATATTTAGTC
73908070 ATTTAATAAATTATTAAT
1 ATTTAATAAATTATTAAT
73908088 ATAATTAATATAATTTATT-AT
1 AT--TTAATA-AA-TTATTAAT
73908109 -TTTAATAAATTATT
1 ATTTAATAAATTATT
73908123 TGATATTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.16
17 2 0.06
18 8 0.26
20 7 0.23
21 4 0.13
22 5 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAATAAATTATTAAT
Found at i:73908154 original size:13 final size:14
Alignment explanation
Indices: 73908138--73908179 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
73908128 TTTCAATTTT
73908138 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
73908151 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
73908166 ATTTTAAATAATAT
1 ATTTT-AATAATAT
73908180 TCTTCATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:73908164 original size:16 final size:16
Alignment explanation
Indices: 73908142--73908178 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73908132 AATTTTATTT
73908142 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
73908159 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
73908174 TAATA
1 TAATA
73908179 TTCTTCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:73914013 original size:15 final size:15
Alignment explanation
Indices: 73913993--73914049 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
73913983 ATTCAATATT
73913993 AATATTTTAATAATA
1 AATATTTTAATAATA
*
73914008 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
73914027 AATATATTAATAATA
1 AATATTTTAATAATA
*
73914042 AATGTTTT
1 AATATTTT
73914050 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:73914528 original size:14 final size:14
Alignment explanation
Indices: 73914509--73914538 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
73914499 CCAGAAAAGT
73914509 AAATCATTTTCCAG
1 AAATCATTTTCCAG
73914523 AAATCATTTTCCAG
1 AAATCATTTTCCAG
73914537 AA
1 AA
73914539 GCCATTTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:73914544 original size:14 final size:14
Alignment explanation
Indices: 73914513--73914547 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
73914503 AAAAGTAAAT
*
73914513 CATTTTCCAGAAAT
1 CATTTTCCAGAAAC
*
73914527 CATTTTCCAGAAGC
1 CATTTTCCAGAAAC
73914541 CATTTTC
1 CATTTTC
73914548 AGGGAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.37
Consensus pattern (14 bp):
CATTTTCCAGAAAC
Found at i:73918509 original size:21 final size:21
Alignment explanation
Indices: 73918463--73918509 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
73918453 TGCCTAGACC
* *
73918463 ATGGGGGGTCAACACGTCCGT
1 ATGGGGGGTCAACACGGCCAT
73918484 ATGGGGGGTCAACACGGCCAT
1 ATGGGGGGTCAACACGGCCAT
*
73918505 GTGGG
1 ATGGG
73918510 AGCAGGCACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.43, T:0.17
Consensus pattern (21 bp):
ATGGGGGGTCAACACGGCCAT
Found at i:73919465 original size:13 final size:14
Alignment explanation
Indices: 73919441--73919469 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
73919431 TCCATATCAC
73919441 AAAATAATAAATAA
1 AAAATAATAAATAA
73919455 AAAATAA-AAATAA
1 AAAATAATAAATAA
73919468 AA
1 AA
73919470 TCTAACCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAATAATAAATAA
Found at i:73921007 original size:17 final size:17
Alignment explanation
Indices: 73920991--73921029 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
73920981 AACATTATTA
73920991 ATATT-ATTTAAAAATT
1 ATATTAATTTAAAAATT
73921007 ATATTTAATTTAAAAATT
1 ATA-TTAATTTAAAAATT
73921025 ATATT
1 ATATT
73921030 TCATTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.14
17 4 0.19
18 14 0.67
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTAATTTAAAAATT
Found at i:73921041 original size:20 final size:18
Alignment explanation
Indices: 73920996--73921035 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
73920986 TATTAATATT
73920996 ATTTAAAAATTATATTTA
1 ATTTAAAAATTATATTTA
*
73921014 ATTTAAAAATTATATTTC
1 ATTTAAAAATTATATTTA
73921032 ATTT
1 ATTT
73921036 TTAAAATAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTAAAAATTATATTTA
Found at i:73921394 original size:19 final size:20
Alignment explanation
Indices: 73921369--73921409 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
73921359 GGCACTACCA
73921369 ATTTTTTT-AATA-AATTTT
1 ATTTTTTTAAATATAATTTT
*
73921387 ATTTTTTTAAATATTATTTT
1 ATTTTTTTAAATATAATTTT
73921407 ATT
1 ATT
73921410 AGTGGTGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 4 0.20
20 8 0.40
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTTTTTAAATATAATTTT
Found at i:73921972 original size:108 final size:107
Alignment explanation
Indices: 73921838--73922154 Score: 398
Period size: 101 Copynumber: 3.0 Consensus size: 107
73921828 ATGAATGTAA
* * * * *
73921838 TTTTTTTATAATTATTTTAAAATTATTTTGTTAGTAATTTATGATTACGTTATAATTTGTTTGTG
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
*
73921903 TTTTATTTAGTGTTTTGTGAATTTTTATTAATGTAAATTTTT
66 TTTTATTTAGTGTTTTGTGATTTTTTATTAATGTAAATTTTT
* * *
73921945 GTTTTTTTAAAATTATTTTATAGTTATTTTGTTAATAACTTT-TTATTAGGTTATAAATT-ATTG
1 -TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAA-TTTATGATTAGGTTATAAATTGTTTG
** * *
73922008 TGTTTGGTTTAGTATTTT-T--TTTTTTATTAATGTAAA--ATT
64 TGTTTTATTTAGTGTTTTGTGATTTTTTATTAATGTAAATTTTT
* *
73922047 ATTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGT-
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* *
73922111 ATTTAGTTTAGTGTTTTGTGATTTTTTATTGATGTAAATTTTT
66 TTTTA-TTTAGTGTTTTGTGATTTTTTATTAATGTAAATTTTT
73922154 T
1 T
73922155 ATAATGTAAT
Statistics
Matches: 175, Mismatches: 25, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
100 3 0.02
101 53 0.30
102 15 0.09
103 1 0.01
104 16 0.09
105 16 0.09
106 1 0.01
107 20 0.11
108 47 0.27
109 3 0.02
ACGTcount: A:0.27, C:0.01, G:0.12, T:0.61
Consensus pattern (107 bp):
TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
TTTTATTTAGTGTTTTGTGATTTTTTATTAATGTAAATTTTT
Found at i:73922058 original size:13 final size:13
Alignment explanation
Indices: 73922040--73922064 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73922030 TTTATTAATG
73922040 TAAAATTATTTTT
1 TAAAATTATTTTT
73922053 TAAAATTATTTT
1 TAAAATTATTTT
73922065 ATAGTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAAATTATTTTT
Found at i:73922152 original size:101 final size:100
Alignment explanation
Indices: 73921822--73922177 Score: 355
Period size: 101 Copynumber: 3.5 Consensus size: 100
73921812 TGGTTTAATG
* * * * * *
73921822 TTTTTTATGAATGTAATTTTTTTATAATTATTTTAAAATTATTTTGTTAGTAATTTATGATTACG
1 TTTTTTATTAATGTAAATTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGG
* *
73921887 TTATAATTTGTTTGTGTTTTA-TTTAGTGTTTTGTGA
66 TTATAAATTG-TTGT-ATTTAGTTTAGTGTTTTGTGA
* *
73921923 ATTTTTATTAATGTAAATTTTTGTTTTTTTAAAATTATTTTATAGTTATTTTGTTAATAACTTT-
1 TTTTTTATTAATGTAAA-------TTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAA-TTTA
* * * * *
73921987 TTATTAGGTTATAAATTATTGTGTTTGGTTTAGTATTTT-T--
58 TGATTAGGTTATAAATTGTTGTATTTAGTTTAGTGTTTTGTGA
73922027 TTTTTTATTAATGTAAAATTATTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGAT
1 TTTTTTATTAATGT--AA--ATTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGAT
73922092 TAGGTTATAAATTGTTAGTATTTAGTTTAGTGTTTTGTGA
62 TAGGTTATAAATTGTT-GTATTTAGTTTAGTGTTTTGTGA
* * *
73922132 TTTTTTATTGATGTAAATTTTTTATAATGTAATTTTAT-TTTATTTT
1 TTTTTTATTAATGTAAATTTTTTAAAAT-T-ATTTTATAGTTATTTT
73922178 TACTTATTTG
Statistics
Matches: 211, Mismatches: 24, Indels: 39
0.77 0.09 0.14
Matches are distributed among these distances:
100 3 0.01
101 78 0.37
102 24 0.11
103 10 0.05
104 13 0.06
105 13 0.06
106 6 0.03
107 14 0.07
108 47 0.22
109 3 0.01
ACGTcount: A:0.27, C:0.01, G:0.12, T:0.61
Consensus pattern (100 bp):
TTTTTTATTAATGTAAATTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGG
TTATAAATTGTTGTATTTAGTTTAGTGTTTTGTGA
Found at i:73927901 original size:18 final size:21
Alignment explanation
Indices: 73927863--73927904 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 21
73927853 TGACACCACT
73927863 AATAAAATAATATATTTAAAA
1 AATAAAATAATATATTTAAAA
73927884 AATAAAA-AA-ATA-TTAAAA
1 AATAAAATAATATATTTAAAA
73927902 AAT
1 AAT
73927905 TGGTGGTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 3 0.14
20 2 0.10
21 7 0.33
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
AATAAAATAATATATTTAAAA
Found at i:73927902 original size:19 final size:21
Alignment explanation
Indices: 73927863--73927903 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
73927853 TGACACCACT
*
73927863 AATAAAATAATATATTTAAAA
1 AATAAAATAATATATTAAAAA
73927884 AATAAAA-AA-ATATTAAAAA
1 AATAAAATAATATATTAAAAA
73927903 A
1 A
73927904 TTGGTGGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 2 0.11
21 7 0.37
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (21 bp):
AATAAAATAATATATTAAAAA
Found at i:73928376 original size:19 final size:19
Alignment explanation
Indices: 73928334--73928384 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
73928324 AAAAATTAAA
*
73928334 AAAAATTCAAAATAATTTT
1 AAAAATTTAAAATAATTTT
*
73928353 TAAAATTTAAAAT-ATTTAT
1 AAAAATTTAAAATAATTT-T
73928372 AAAAATTTCAAAA
1 AAAAATTT-AAAA
73928385 ATTATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 19 0.70
20 4 0.15
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTTAAAATAATTTT
Found at i:73928407 original size:17 final size:17
Alignment explanation
Indices: 73928358--73928419 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
73928348 ATTTTTAAAA
*
73928358 TTTAAAATATTTATAAAAAT
1 TTTAAAA-A-TTAT-AAATT
* *
73928378 TTCAAAAATTAT-ATTT
1 TTTAAAAATTATAAATT
73928394 TTTAAAATATTATAAATT
1 TTTAAAA-ATTATAAATT
73928412 TTTAAAAA
1 TTTAAAAA
73928420 AAATTCTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 8 0.23
17 6 0.17
18 14 0.40
19 1 0.03
20 6 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTAAAAATTATAAATT
Found at i:73930127 original size:93 final size:93
Alignment explanation
Indices: 73930015--73930186 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73930005 GCCCATAAGT
* *
73930015 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73930080 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
73930108 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73930173 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
73930187 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73930182 original size:46 final size:46
Alignment explanation
Indices: 73930007--73930182 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
73929997 TGTAACCCGC
* * *
73930007 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
73930053 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
73930103 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
73930146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73930183 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:73932608 original size:30 final size:30
Alignment explanation
Indices: 73932564--73932652 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
73932554 CAAAGATAAC
73932564 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
73932593 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
73932623 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
73932653 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:73932612 original size:15 final size:15
Alignment explanation
Indices: 73932564--73932643 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
73932554 CAAAGATAAC
*
73932564 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73932578 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
73932593 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
73932608 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73932623 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73932638 AAGAAA
1 AAGAAA
73932644 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73932652 original size:15 final size:15
Alignment explanation
Indices: 73932575--73932652 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
73932565 AGAAAACCGA
73932575 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
73932590 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
73932604 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
73932619 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
73932635 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
73932650 ATA
1 ATA
73932653 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:73935716 original size:93 final size:93
Alignment explanation
Indices: 73935604--73935775 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73935594 GCCCATAAGT
* *
73935604 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73935669 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
73935697 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73935762 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
73935776 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73935771 original size:46 final size:46
Alignment explanation
Indices: 73935596--73935771 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
73935586 TGTAACCCGC
* * *
73935596 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
73935642 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
73935692 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
73935735 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73935772 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:73940337 original size:19 final size:20
Alignment explanation
Indices: 73940303--73940341 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
73940293 TAATATTAGG
*
73940303 TTTATTGTAGATTATAGTAA
1 TTTATTATAGATTATAGTAA
73940323 TTTATTATA-ATTATAGTAA
1 TTTATTATAGATTATAGTAA
73940342 AGATTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTATTATAGATTATAGTAA
Found at i:73943290 original size:16 final size:17
Alignment explanation
Indices: 73943269--73943307 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
73943259 AAAACAATGC
73943269 ATTTTAAAATACTTT-A
1 ATTTTAAAATACTTTAA
* *
73943285 ATTTTAAATTTCTTTAA
1 ATTTTAAAATACTTTAA
73943302 ATTTTA
1 ATTTTA
73943308 GAGTTCTCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAAAATACTTTAA
Found at i:73943710 original size:9 final size:9
Alignment explanation
Indices: 73943683--73943717 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
73943673 TAAAAAACTT
73943683 TTAATAATTA
1 TTAA-AATTA
73943693 TTAAAAATTA
1 TT-AAAATTA
73943703 TTAAAATTA
1 TTAAAATTA
73943712 TTAAAA
1 TTAAAA
73943718 ATACTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 13 0.54
10 9 0.38
11 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TTAAAATTA
Found at i:73943718 original size:10 final size:10
Alignment explanation
Indices: 73943683--73943719 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
73943673 TAAAAAACTT
*
73943683 TTAATAATTA
1 TTAAAAATTA
73943693 TTAAAAATTA
1 TTAAAAATTA
73943703 TT-AAAATTA
1 TTAAAAATTA
73943712 TTAAAAAT
1 TTAAAAAT
73943720 ACTAAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:73944831 original size:11 final size:11
Alignment explanation
Indices: 73944815--73944860 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
73944805 ACATTATAAA
73944815 AAATAATTTTT
1 AAATAATTTTT
73944826 AAATAATTTTGT
1 AAATAATTTT-T
73944838 --ATAATTTTT
1 AAATAATTTTT
*
73944847 TAATAATTATTT
1 AAATAATT-TTT
73944859 AA
1 AA
73944861 GAAATTCAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
9 1 0.03
10 8 0.27
11 16 0.53
12 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (11 bp):
AAATAATTTTT
Found at i:73945825 original size:21 final size:20
Alignment explanation
Indices: 73945784--73945829 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
73945774 AACATATACT
73945784 ATTTCTTTTCATTAACCTTC
1 ATTTCTTTTCATTAACCTTC
* * *
73945804 ATTTCTATTTCTTTTACTTTC
1 ATTTCT-TTTCATTAACCTTC
73945825 ATTTC
1 ATTTC
73945830 CTTGATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTCTTTTCATTAACCTTC
Found at i:73954037 original size:29 final size:29
Alignment explanation
Indices: 73954003--73954080 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
73953993 GTGACGAGAT
* *
73954003 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
73954032 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
73954061 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
73954081 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:73961203 original size:29 final size:29
Alignment explanation
Indices: 73961169--73961246 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
73961159 GTGACGAGAT
* *
73961169 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
73961198 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
73961227 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
73961247 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:73963008 original size:80 final size:79
Alignment explanation
Indices: 73962792--73963022 Score: 252
Period size: 79 Copynumber: 2.9 Consensus size: 79
73962782 TCGAATGATG
* * * * *
73962792 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAGACCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
* * *
73962855 TGTGCGAGTTACTAAT
64 TGTACGAGTCACTAAA
* * * *
73962871 TCCGGGCTAAGACCGAAGGCATTGGTGCGAGTTATTA-AATCTGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGACCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
73962935 GTACGAGTCACTAAA
65 GTACGAGTCACTAAA
* * * *
73962950 TCCGGGTTCAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
*
73963015 GAACGAGT
65 GTACGAGT
73963023 AGCTATATCC
Statistics
Matches: 126, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 2 0.02
79 65 0.52
80 57 0.45
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGACCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TACGAGTCACTAAA
Found at i:73963022 original size:40 final size:40
Alignment explanation
Indices: 73962792--73963015 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
73962782 TCGAATGATG
* * *
73962792 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73962831 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
73962871 TCCGGGCTAAG-ACCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
73962910 TCTGGGTTAAGTCCCGAAGGCATTTGTACGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73962950 TCCGGGTTCAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73962991 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73963016 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 43 0.27
40 105 0.67
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73970086 original size:39 final size:40
Alignment explanation
Indices: 73969985--73970143 Score: 186
Period size: 40 Copynumber: 4.1 Consensus size: 40
73969975 TCGAATGATG
* * * *
73969985 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
73970025 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
*
73970065 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
*
73970104 TCCGGG-TAAG-TCCGAAGGCATTTGT-CGAG-TACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
73970140 TCCG
1 TCCG
73970144 TAGTCCCGAA
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
36 11 0.10
37 4 0.04
38 17 0.16
39 31 0.30
40 35 0.33
41 7 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73970166 original size:24 final size:25
Alignment explanation
Indices: 73970139--73970186 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
73970129 CGAGTACTAA
73970139 ATCC-GTAGTCCCGAAGGCATTTAT
1 ATCCGGTAGTCCCGAAGGCATTTAT
73970163 ATCCGGGTAGTCCCGAAGGCATTT
1 ATCC-GGTAGTCCCGAAGGCATTT
73970187 GTGCGAGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 4 0.18
26 18 0.82
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (25 bp):
ATCCGGTAGTCCCGAAGGCATTTAT
Found at i:73977313 original size:40 final size:40
Alignment explanation
Indices: 73977233--73977453 Score: 234
Period size: 40 Copynumber: 5.5 Consensus size: 40
73977223 ATGATGTCCA
* * * * *
73977233 GGCTAAGTCCTGAAAGC-TTTGTGCTAAGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * *
73977273 GACTAAGAT-CCGAAGGCATATGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
73977313 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTATTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
73977352 GGTTAAGTCCCAAAGGCATTTGTGCGAGTCACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
73977392 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
* * *
73977432 AGCTATGTCCCAAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
73977454 AACGAGTAGC
Statistics
Matches: 152, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.22
40 109 0.72
41 10 0.07
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:73977460 original size:80 final size:78
Alignment explanation
Indices: 73977297--73977476 Score: 211
Period size: 80 Copynumber: 2.3 Consensus size: 78
73977287 GGCATATGTG
* * * * *
73977297 CGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAGTCC
1 CGAG-TACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGCTAAGTCC
**
73977362 CAAAGGCATTTGTG
65 CAAAGGCATTTGAA
* *
73977376 CGAGTCACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGAGCTATGT
1 CGAGT-ACTAAATCCGGGTTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGAGCTAAGT
73977440 CCCAAAGGCATTTGAA
63 CCCAAAGGCATTTGAA
*
73977456 CGAGTAGCTATATCC-GGTTAA
1 CGAGTA-CTAAATCCGGGTTAA
73977477 ATTCTGAAGG
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 26 0.30
80 57 0.66
81 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (78 bp):
CGAGTACTAAATCCGGGTTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGCTAAGTCCC
AAAGGCATTTGAA
Found at i:73988301 original size:47 final size:49
Alignment explanation
Indices: 73988232--73988364 Score: 171
Period size: 47 Copynumber: 2.7 Consensus size: 49
73988222 AGGGTATAAT
* * *
73988232 GTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCACG-T-TAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACGATCTAA
**
73988279 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACGCATCTGT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACG-ATCTAA
* * *
73988329 GTTGATGCCATGTTCCAGACATGGTCTTATACTGAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC
73988365 ACATCATGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
47 40 0.53
49 1 0.01
50 34 0.45
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACGATCTAA
Found at i:73993717 original size:40 final size:40
Alignment explanation
Indices: 73993590--73993719 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73993580 ATGCTGGAAA
* *
73993590 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
73993630 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73993670 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73993710 TTATATCCGG
1 TTATATCCGG
73993720 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73995273 original size:26 final size:26
Alignment explanation
Indices: 73995237--73995288 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
73995227 TGAAGAACTT
73995237 AGAAAATTTCATGCATCAAGGCTCCA
1 AGAAAATTTCATGCATCAAGGCTCCA
*
73995263 AGAAAATTTCATGCATTAAGGCTCCA
1 AGAAAATTTCATGCATCAAGGCTCCA
73995289 CACGCCCGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
AGAAAATTTCATGCATCAAGGCTCCA
Found at i:73996896 original size:79 final size:81
Alignment explanation
Indices: 73996787--73996969 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
73996777 TACTCGTTCA
* *
73996787 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
73996850 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
73996867 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
73996930 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
73996946 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
73996970 TATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:73996969 original size:40 final size:40
Alignment explanation
Indices: 73996766--73996972 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
73996756 CGGAATTTAA
** *
73996766 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73996806 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73996846 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
73996885 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
73996925 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73996965 CCGGATAT
1 CCGGATAT
73996973 CATTCGAATA
Statistics
Matches: 145, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 98 0.68
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74005038 original size:81 final size:80
Alignment explanation
Indices: 74004837--74005066 Score: 304
Period size: 81 Copynumber: 2.9 Consensus size: 80
74004827 GCTACTCGTT
* * **
74004837 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
* * *
74004900 GGATTTAGTGACTCGCA
64 GGATATAGTCACTAGCA
* * *
74004917 CCAGTGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTGCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
74004981 ATATAGTCACTTAGCA
66 ATATAGTCAC-TAGCA
* *
74004997 CAAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
74005062 ATATA
66 ATATA
74005067 TTCGAATAAC
Statistics
Matches: 131, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
78 3 0.02
79 47 0.36
80 28 0.21
81 53 0.40
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATATAGTCACTAGCA
Found at i:74005056 original size:40 final size:39
Alignment explanation
Indices: 74004837--74005062 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 39
74004827 GCTACTCGTT
* *
74004837 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
74004877 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
* * *
74004917 CCAGTGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
74004956 CAAATGCCTGCGGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
*
74004997 CAAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTCGCA
* *
74005037 CAAATGCCTTTGGATCTTAGTCCGGA
1 CAAATGCCTTCGGA-CTTAGCCCGGA
74005063 TATATTCGAA
Statistics
Matches: 155, Mismatches: 24, Indels: 14
0.80 0.12 0.07
Matches are distributed among these distances:
39 39 0.25
40 81 0.52
41 30 0.19
42 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:74006605 original size:47 final size:47
Alignment explanation
Indices: 74006402--74006704 Score: 246
Period size: 47 Copynumber: 6.4 Consensus size: 47
74006392 TGCTGCCATA
*
74006402 TCCCAGACATGGTCTTACGCTGGCTATC-TCTATCGAGGCCGATGCCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCATC-ATCGAGGCCGATG-CATG
* * ** * * *
74006451 TCCCAGACATGGTCTTACACTAGCTCTTGTGTATACG-TGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCAT-CAT-CGAGGCCGATGCATG
* * ** *
74006500 TCCCAGACATGTCTTATACTAGC-A-CGAAAAT-TA-GCCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTATC-ATCATCGAGGCCGATGCATG
*
74006544 TCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
* * *
74006591 TCCCAAACATGTCTTACACTGGC-ACTCATC-TCTACGCCGATGCCATG
1 TCCCAGACATGTCTTACACTGGCTA-TCATCATCGAGGCCGATG-CATG
* * * **
74006638 TCCCAGACATGGTCTTACACTGGCTATCTTAAT-GTGGATGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
*
74006685 TCCCAGATATGTCTTACACT
1 TCCCAGACATGTCTTACACT
74006705 AGTCCTCGTC
Statistics
Matches: 206, Mismatches: 34, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
44 30 0.15
45 4 0.02
46 25 0.12
47 63 0.31
48 33 0.16
49 40 0.19
50 9 0.04
51 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
Found at i:74006686 original size:94 final size:93
Alignment explanation
Indices: 74006402--74006744 Score: 311
Period size: 94 Copynumber: 3.6 Consensus size: 93
74006392 TGCTGCCATA
* * *
74006402 TCCCAGACATGGTCTTACGCTGGCTATCTC-TATCGAGGCCGATGCCATGTCCCAGACATGGTCT
1 TCCCAGACAT-GTCTTACACTGGC-A-CTCATCTCTA-GCCGATGCCATGTCCCAGACATGGTCT
* * * *
74006466 TACACTAGCTCTTGTGTATACGT-GCTGATGCATG
62 TACACTGGCT-ATCT-TA-ATGTGGCTGATGCATG
* * ** ** *
74006500 TCCCAGACATGTCTTATACTAGCACGAAAAT-TAGCCGATG-CATGTCCCAGACA-CGTCTTACA
1 TCCCAGACATGTCTTACACTGGCACTCATCTCTAGCCGATGCCATGTCCCAGACATGGTCTTACA
* * * *
74006562 CTGGCTATCATCATCGAGGCCGATGCATG
66 CTGGCTATCTTAAT-GTGGCTGATGCATG
*
74006591 TCCCAAACATGTCTTACACTGGCACTCATCTCTACGCCGATGCCATGTCCCAGACATGGTCTTAC
1 TCCCAGACATGTCTTACACTGGCACTCATCTCTA-GCCGATGCCATGTCCCAGACATGGTCTTAC
*
74006656 ACTGGCTATCTTAATGTGGATGATGCATG
65 ACTGGCTATCTTAATGTGGCTGATGCATG
* * * * * *
74006685 TCCCAGATATGTCTTACACTAGTC-CTCGTCTCAATGTCGATGCCATGTCCCAAACATGGT
1 TCCCAGACATGTCTTACACT-GGCACTCATCTCTA-GCCGATGCCATGTCCCAGACATGGT
74006745 ATTATACTCA
Statistics
Matches: 200, Mismatches: 37, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
89 1 0.00
90 2 0.01
91 35 0.17
92 15 0.08
93 20 0.10
94 80 0.40
95 24 0.12
96 3 0.01
97 10 0.05
98 10 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TCCCAGACATGTCTTACACTGGCACTCATCTCTAGCCGATGCCATGTCCCAGACATGGTCTTACA
CTGGCTATCTTAATGTGGCTGATGCATG
Found at i:74006699 original size:141 final size:140
Alignment explanation
Indices: 74006402--74006744 Score: 340
Period size: 141 Copynumber: 2.4 Consensus size: 140
74006392 TGCTGCCATA
* *
74006402 TCCCAGACATGGTCTTACGCTGGCTATCTCTATCGAGGCCGATGCCATGTCCCAGACATGGTCTT
1 TCCCAGACAT-GTCTTACACTGGCTATCTCTATCGAGGCCGATGCCATGTCCCAAACATGGTCTT
* ** * * *
74006467 ACACTAGCTCTTGTGTATACGTGCTGATGCATGTCCCAGACATGTCTTATACTAGCACGAAAATT
65 ACACTAGCACTCATCTATACG-GCCGATGCATGTCCCAGACATGTCTTACACTAGCACGAAAATT
*
74006532 AGCCGATGCATG
129 AGACGATGCATG
*
74006544 TCCCAGACACGTCTTACACTGGCTATCATC-ATCGAGGCCGATG-CATGTCCCAAACAT-GTCTT
1 TCCCAGACATGTCTTACACTGGCTATC-TCTATCGAGGCCGATGCCATGTCCCAAACATGGTCTT
* * * **
74006606 ACACTGGCACTCATCTCTAC-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-TTA
65 ACACTAGCACTCATCTATACGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-A-CGAAA
* *
74006669 ATGTGGATGATGCATG
126 AT-TAGACGATGCATG
* * * * * * *
74006685 TCCCAGATATGTCTTACACTAG-T-CCTCGTCTCAATGTCGATGCCATGTCCCAAACATGGT
1 TCCCAGACATGTCTTACACTGGCTATCTC-TATCGAGGCCGATGCCATGTCCCAAACATGGT
74006745 ATTATACTCA
Statistics
Matches: 166, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
137 6 0.04
138 16 0.10
139 31 0.19
140 27 0.16
141 73 0.44
142 13 0.08
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (140 bp):
TCCCAGACATGTCTTACACTGGCTATCTCTATCGAGGCCGATGCCATGTCCCAAACATGGTCTTA
CACTAGCACTCATCTATACGGCCGATGCATGTCCCAGACATGTCTTACACTAGCACGAAAATTAG
ACGATGCATG
Found at i:74006732 original size:47 final size:45
Alignment explanation
Indices: 74006535--74006742 Score: 161
Period size: 47 Copynumber: 4.5 Consensus size: 45
74006525 GAAAATTAGC
* * * * *
74006535 CGATG-CATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACT-GC-CTCATC-TCAATGT
* * * *
74006582 CGATG-CATGTCCCAAACATGTCTTACACTGGCACTCATCTCTACGC
1 CGATGCCATGTCCCAGACATGTCTTACACT-GC-CTCATCTCAATGT
* *
74006628 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCTTAATGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGCCTCATCTCAATGT
* * * *
74006673 GGATGATGCATGTCCCAGATATGTCTTACACTAGTCCTCGTCTCAATGT
1 CGATG--CCATGTCCCAGACATGTCTTACACT-G-CCTCATCTCAATGT
*
74006722 CGATGCCATGTCCCAAACATG
1 CGATGCCATGTCCCAGACATG
74006743 GTATTATACT
Statistics
Matches: 132, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
45 10 0.08
46 22 0.17
47 76 0.58
48 12 0.09
49 12 0.09
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGCCTCATCTCAATGT
Found at i:74019992 original size:25 final size:25
Alignment explanation
Indices: 74019959--74020017 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
74019949 GGAAGCTCAT
*
74019959 AAGAGCCATAATTGGGAAGATCACA
1 AAGAGCCATAATCGGGAAGATCACA
* * *
74019984 AAGAACCAT-ATCGGGAAGCTTACA
1 AAGAGCCATAATCGGGAAGATCACA
74020008 AAGAGCCATA
1 AAGAGCCATA
74020018 TAACGGTAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 20 0.71
25 8 0.29
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (25 bp):
AAGAGCCATAATCGGGAAGATCACA
Done.