Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 258 of 427
Found at i:74021348 original size:24 final size:24
Alignment explanation
Indices: 74021315--74021387 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
74021305 AAGGTTGTCA
74021315 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
74021339 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
74021363 GGAGAAGATTTAGGAGCTGACAAG
1 GGAGAAGATTTAGGAGCTGATAAG
74021387 G
1 G
74021388 AGCAGGAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.19
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:74029213 original size:24 final size:24
Alignment explanation
Indices: 74029180--74029265 Score: 127
Period size: 24 Copynumber: 3.6 Consensus size: 24
74029170 AAGGCTGTCA
*
74029180 GGAGAAGATTTAGGAGCTAATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
74029204 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
74029228 GGAGAGGATTTAAGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
74029252 GGAGAAGATTTAGG
1 GGAGAAGATTTAGG
74029266 TGTAATATCC
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.38, C:0.03, G:0.37, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:74030732 original size:46 final size:45
Alignment explanation
Indices: 74030559--74030731 Score: 217
Period size: 46 Copynumber: 3.8 Consensus size: 45
74030549 ATTTGGGCAT
* *
74030559 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAGCGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAACGC
* * *
74030604 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAAC---GC
74030649 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAACGC
*
74030697 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
74030732 GGCGGGTTAC
Statistics
Matches: 110, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 30 0.27
46 33 0.30
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAACGC
Found at i:74033695 original size:15 final size:15
Alignment explanation
Indices: 74033675--74033743 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
74033665 GTATCTTGGG
74033675 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
74033690 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
74033705 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
74033720 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
74033735 TTTCTTTAT
1 TTTCTTTAT
74033744 TCGTTTTCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:74033744 original size:30 final size:30
Alignment explanation
Indices: 74033666--74033745 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
74033656 CATAGTATCG
* * *
74033666 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
74033696 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
74033726 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
74033746 GTTTTCTTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:74036190 original size:46 final size:46
Alignment explanation
Indices: 74036137--74036312 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
74036127 TATTTGGGCA
74036137 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
74036183 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
74036230 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
74036276 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74036313 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:74036292 original size:93 final size:93
Alignment explanation
Indices: 74036133--74036304 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74036123 GGGATATTTG
* *
74036133 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74036198 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
74036226 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
74036291 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74036305 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74039333 original size:32 final size:32
Alignment explanation
Indices: 74039248--74039340 Score: 80
Period size: 32 Copynumber: 2.8 Consensus size: 32
74039238 TATGGGCCGT
*
74039248 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTC
1 ACTGTTATCTGAAT---GGGCTAAGGCCCAGTATC
* * * **
74039283 A-TGTAATATGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGTATC
*
74039315 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTAAGGCCC
74039341 GATGGGCTTG
Statistics
Matches: 45, Mismatches: 11, Indels: 7
0.71 0.17 0.11
Matches are distributed among these distances:
32 28 0.62
33 7 0.16
34 7 0.16
35 3 0.07
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (32 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTATC
Found at i:74053616 original size:27 final size:28
Alignment explanation
Indices: 74053586--74053655 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
74053576 ATAATAAGTC
*
74053586 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
74053613 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
74053641 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74053656 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74061548 original size:27 final size:28
Alignment explanation
Indices: 74061518--74061587 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
74061508 ATAATAAGTC
*
74061518 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
74061545 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
74061573 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74061588 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74065302 original size:25 final size:25
Alignment explanation
Indices: 74065268--74065322 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
74065258 CAGTTAAAGA
74065268 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
74065293 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
74065318 ATTCG
1 ATTCG
74065323 TTATTACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:74065502 original size:43 final size:43
Alignment explanation
Indices: 74065441--74065583 Score: 178
Period size: 43 Copynumber: 3.3 Consensus size: 43
74065431 CTTTGCTCGA
** *
74065441 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
* *
74065484 ATCACCGGCACGAAGCCTGCTAGGAACGAAGGCCCAAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
* * * ** * *
74065527 ATCACCAGCACAAAGCCTGCTAGGCATGAAGGCCTGATTTCAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
74065570 ATCACCGGCACGAA
1 ATCACCGGCACGAA
74065584 TGCCCTTCAG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAC
Found at i:74065653 original size:40 final size:40
Alignment explanation
Indices: 74065572--74065692 Score: 161
Period size: 40 Copynumber: 3.0 Consensus size: 40
74065562 GATTTCACAT
* * * * *
74065572 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAA
* * *
74065612 CACCAGCACGAATGCTCTTCGGGCCTTGGCCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAA
*
74065652 CACCAGCACGAATACTCTTCGGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAA
74065692 C
1 C
74065693 TCTCAATTCT
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAA
Found at i:74069612 original size:2 final size:2
Alignment explanation
Indices: 74069605--74069630 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
74069595 CAAATTTAAC
74069605 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
74069631 GCATACCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:74073175 original size:5 final size:5
Alignment explanation
Indices: 74073168--74073232 Score: 105
Period size: 5 Copynumber: 13.2 Consensus size: 5
74073158 AATATGAAAT
* *
74073168 ATAAT ATAAA AGAAA AT-AA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
74073217 ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA A
74073233 CAAACACTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
4 4 0.07
5 52 0.93
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:74076517 original size:39 final size:39
Alignment explanation
Indices: 74076462--74076694 Score: 295
Period size: 39 Copynumber: 5.9 Consensus size: 39
74076452 TGTGTATGAA
* *
74076462 TGTGCGAGTTGTGATATCCGGGCTATGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
74076501 GGTGCGAGCTATGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
74076540 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
74076579 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
74076618 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGGAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
74076658 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
74076695 GTTTGAACGA
Statistics
Matches: 167, Mismatches: 26, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 128 0.77
40 39 0.23
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:74076556 original size:78 final size:78
Alignment explanation
Indices: 74076462--74076655 Score: 343
Period size: 78 Copynumber: 2.5 Consensus size: 78
74076452 TGTGTATGAA
* *
74076462 TGTGCGAGTTGTGATATCCGGGCTATGCCCGAAGGCAATGGTGCGAGCTATGATATCTGGGCTAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA
74076527 GCCCGAAGGCAAT
66 GCCCGAAGGCAAT
74076540 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA
74076605 GCCCGAAGGCAAT
66 GCCCGAAGGCAAT
* *
74076618 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGGAGGCA
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
74076656 TTTGTGCGGG
Statistics
Matches: 111, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
78 102 0.92
79 9 0.08
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.23
Consensus pattern (78 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA
GCCCGAAGGCAAT
Found at i:74083234 original size:40 final size:40
Alignment explanation
Indices: 74083179--74083428 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
74083169 AACATTGGAA
74083179 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74083219 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74083259 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74083299 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
74083339 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
74083378 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
74083419 CTATATCCGG
1 ATATATCCGG
74083429 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:74093259 original size:40 final size:40
Alignment explanation
Indices: 74093157--74093340 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
74093147 AAATTGAATG
* * * * *
74093157 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
74093197 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
74093237 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
74093277 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
74093317 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
74093341 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:74108266 original size:3 final size:3
Alignment explanation
Indices: 74108260--74108285 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
74108250 GGCAGTGTCA
74108260 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
74108286 ATCATCATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:74108835 original size:25 final size:25
Alignment explanation
Indices: 74108801--74108852 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
74108791 ATTACTTTTT
74108801 ACACTAAAAGCAATCCAAAATTCTC
1 ACACTAAAAGCAATCCAAAATTCTC
74108826 ACACTAAAAGCAATCCAAAATTCTC
1 ACACTAAAAGCAATCCAAAATTCTC
74108851 AC
1 AC
74108853 TATTTCACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.29, G:0.04, T:0.19
Consensus pattern (25 bp):
ACACTAAAAGCAATCCAAAATTCTC
Found at i:74115762 original size:47 final size:49
Alignment explanation
Indices: 74115693--74115818 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
74115683 ATGCCAATGA
* * * * *
74115693 CATGTCCCATACATGATCTTACACTGGCTCATC-CATC-AAGTCGATGC
1 CATGTCCCAAACATGGTCTTACACTGGCTCATCAAATCGAAGCCGACGC
* *
74115740 CATGTCCCAAACATGGTCTTACATTGACT-ATCGAAATCGAAGCCGACGC
1 CATGTCCCAAACATGGTCTTACACTGGCTCATC-AAATCGAAGCCGACGC
*
74115789 CATGTCCCAGACATGGTCTTACACTGGCTC
1 CATGTCCCAAACATGGTCTTACACTGGCTC
74115819 TCACATATCC
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
46 3 0.05
47 25 0.38
48 3 0.05
49 34 0.52
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (49 bp):
CATGTCCCAAACATGGTCTTACACTGGCTCATCAAATCGAAGCCGACGC
Found at i:74115942 original size:46 final size:46
Alignment explanation
Indices: 74115883--74116047 Score: 156
Period size: 46 Copynumber: 3.5 Consensus size: 46
74115873 TGTAGCTGAG
*
74115883 GCATGTCCCAGACATGTCTTACACTGGCTTACATCACAAGGCCGAT
1 GCATGTCACAGACATGTCTTACACTGGCTTACATCACAAGGCCGAT
* * * * * **
74115929 GCATGTCATAGACATGTCTTGCACTAGCTCT-CGTCTCAATACCGAT
1 GCATGTCACAGACATGTCTTACACTGGCT-TACATCACAAGGCCGAT
* * * *
74115975 GTCATGTCCCAGACATGGCCTTACACTGGCTCTTACA--ATATGGCCGAT
1 G-CATGTCACAGACAT-GTCTTACACTGG--CTTACATCACAAGGCCGAT
74116023 GCATGTCACAGACATGTCTTACACT
1 GCATGTCACAGACATGTCTTACACT
74116048 AGCATACAAT
Statistics
Matches: 92, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
46 46 0.50
47 26 0.28
48 16 0.17
49 1 0.01
50 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GCATGTCACAGACATGTCTTACACTGGCTTACATCACAAGGCCGAT
Found at i:74118193 original size:52 final size:50
Alignment explanation
Indices: 74118111--74118244 Score: 173
Period size: 50 Copynumber: 2.6 Consensus size: 50
74118101 ATTGTGAGAA
* *
74118111 CACATGTGTAGTACTATGTGCGGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-ACAGATTGTTAGGT
* *
74118163 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAACAGATTGTTAGGT
*
74118213 CGCATGTGTAGTACTAAGTGCAGGCTACTATG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATG
74118245 CGTACCCAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
48 3 0.04
49 3 0.04
50 37 0.50
52 31 0.42
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAACAGATTGTTAGGT
Found at i:74118370 original size:50 final size:50
Alignment explanation
Indices: 74118295--74118538 Score: 229
Period size: 50 Copynumber: 4.9 Consensus size: 50
74118285 ATCAGATGGT
**
74118295 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTGTTATGTGTACCGGATTGA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGA
* ** ** * *
74118345 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCAATAGTT
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTG-A
* * * * * * * * *
74118396 TCGATTACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCAGATGGA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGA
* * *
74118446 TAAGTCACGTGTGTAGCACTAAGTGCAAGCTACTATGTGTA-CGAGATTGA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCG-GATTGA
* * * * *
74118496 TAGGTCGCATGTGTAGTACTAAGTGTAGGCTCCTATGCGTACC
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
74118539 AGAGGGCTTC
Statistics
Matches: 149, Mismatches: 42, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
49 1 0.01
50 111 0.74
51 37 0.25
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGA
Found at i:74118406 original size:137 final size:143
Alignment explanation
Indices: 74118157--74118538 Score: 517
Period size: 137 Copynumber: 2.7 Consensus size: 143
74118147 TAAGACAGTT
* *
74118157 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGATAGGTCGCATGTGT
74118222 AGTACTAAGTGCAGGCTACTATGCGTACCCAATAGTTTCGATCACGTGTGTAGTAC-TA-C-A-T
66 AGTACTAAGTGCAGGCTACTATGCGTACCCAATAGTTTCGATCACGTGTGTAGTACATAGCTACT
74118283 -GT-ATCAGATGG
131 AGTCATCAGATGG
** *
74118294 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTGTTATGTGTACCGGATTGATAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGATAGGTCGCATGTGT
* *
74118359 AGTACTAAGTGCAGGCTACTATGCATACCCAATAGTTTCGATTACGTGTGTAGTACTAAGTGTAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCAATAGTTTCGATCACGTGTGTAGTAC--A---TA-
74118424 GCTACTACGTGCATCAGATGG
125 GCTACTA-GT-CATCAGATGG
* * * *
74118445 ATAAGTCACGTGTGTAGCACTAAGTGCAAGCTACTATGTGTA-CGAGATTGATAGGTCGCATGTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCG-GATTGATAGGTCGCATGTG
* *
74118509 TAGTACTAAGTGTAGGCTCCTATGCGTACC
65 TAGTACTAAGTGCAGGCTACTATGCGTACC
74118539 AGAGGGCTTC
Statistics
Matches: 213, Mismatches: 17, Indels: 16
0.87 0.07 0.07
Matches are distributed among these distances:
137 114 0.54
143 2 0.01
145 1 0.00
146 1 0.00
147 1 0.00
149 2 0.01
150 2 0.01
151 90 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (143 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCAATAGTTTCGATCACGTGTGTAGTACATAGCTACT
AGTCATCAGATGG
Found at i:74118478 original size:101 final size:101
Alignment explanation
Indices: 74118301--74118482 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
74118291 TGGTTAGGTC
** * * * * * *
74118301 ACGTGTGTAGTACTAAGTGCAGGCTGTTATGTGTACCGGATTGATAGGTCACATGTGTAGTACTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATGGATAAGTCACATGTGTAGCACTA
*
74118366 AGTGCAGGCTACTATGCATACCCAATAGTTTCGATT
66 AGTGCAAGCTACTATGCATACCCAATAGTTTCGATT
* * *
74118402 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCATCAGATGGATAAGTCACGTGTGTAGCACTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATGGATAAGTCACATGTGTAGCACTA
74118467 AGTGCAAGCTACTATG
66 AGTGCAAGCTACTATG
74118483 TGTACGAGAT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (101 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGCACCAGATGGATAAGTCACATGTGTAGCACTA
AGTGCAAGCTACTATGCATACCCAATAGTTTCGATT
Found at i:74118762 original size:16 final size:16
Alignment explanation
Indices: 74118741--74118772 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
74118731 AGAATGGAGT
74118741 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
74118757 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
74118773 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:74124050 original size:27 final size:26
Alignment explanation
Indices: 74123982--74124094 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
74123972 CATGGCTGCT
*** *
74123982 AGAACAGATATTGTAATAGAGTCACC
1 AGAACAGATATTGTGGCAGAGCCACC
*
74124008 AGATACAGATAATGTGGCAGAGCCACC
1 AGA-ACAGATATTGTGGCAGAGCCACC
74124035 AGAACAGATATTTGTGGC-GTAGCCACC
1 AGAACAGATA-TTGTGGCAG-AGCCACC
* * *
74124062 AAAAATAGATATTTGTGGCATAGCCACC
1 -AGAACAGATA-TTGTGGCAGAGCCACC
74124090 AGAAC
1 AGAAC
74124095 TCTTCCTCCA
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
26 11 0.15
27 37 0.52
28 23 0.32
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.20
Consensus pattern (26 bp):
AGAACAGATATTGTGGCAGAGCCACC
Found at i:74124254 original size:27 final size:26
Alignment explanation
Indices: 74124196--74124259 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
74124186 CAAAATTAAC
* *
74124196 CCTAGGGGTATAATGGTCATTTTGCA
1 CCTAGGGGTATAATGGTAATTTTACA
* *
74124222 CCTAGGGGTATGATGGTAATTTTTATA
1 CCTAGGGGTATAATGGTAA-TTTTACA
*
74124249 CTTAGGGGTAT
1 CCTAGGGGTAT
74124260 TTTAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.53
27 15 0.47
ACGTcount: A:0.23, C:0.11, G:0.28, T:0.38
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTTACA
Found at i:74128003 original size:18 final size:20
Alignment explanation
Indices: 74127967--74128013 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74127957 AGTTGTAAGT
74127967 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
74127987 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
74128006 ATGATATA
1 AT-ATATA
74128014 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:74128577 original size:101 final size:101
Alignment explanation
Indices: 74128402--74128633 Score: 281
Period size: 101 Copynumber: 2.3 Consensus size: 101
74128392 CAATTTTAGG
* * **
74128402 TCACGTGTGTAGTACTAAGTGCAGGCTACTAATTGTACCAGATTGTTAGGTTGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAATTGTACCAAATGGTTAGGTCACATGTGTAGTAC
74128467 TAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGA
* * * *
74128503 TCACGTGTGTAGTACTAAGTGTAGGCTATTACA-TGTATCAAATGGTTAGGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA-ATTGTACCAAATGGTTAGGTCACATGTGTAGTA
* * * * * *
74128567 CTAAGTGCAGGCTACTA-CCTGTACCGGATTG-ATAGG
65 CTAAGTGCAGGCTACTATGC-GTACCCGATAGTTTCGA
* *
74128603 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
74128634 CGCGTACCCG
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
100 30 0.27
101 80 0.72
102 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTAATTGTACCAAATGGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGA
Found at i:74128634 original size:50 final size:50
Alignment explanation
Indices: 74128397--74128634 Score: 271
Period size: 50 Copynumber: 4.7 Consensus size: 50
74128387 TAAGACAATT
**
74128397 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAATTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATTG
** * * * *
74128447 TTAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-CCTGTACCAGATTG
* * * * * * * *
74128497 TTTCGATCACGTGTGTAGTACTAAGTGTAGGCTATTACATGTATCAAATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATTG
*
74128548 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATTG
* * *
74128598 ATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAC
74128635 GCGTACCCGA
Statistics
Matches: 153, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
50 117 0.76
51 36 0.24
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATTG
Found at i:74128658 original size:101 final size:101
Alignment explanation
Indices: 74128398--74128662 Score: 268
Period size: 101 Copynumber: 2.6 Consensus size: 101
74128388 AAGACAATTT
* ** *
74128398 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-ATTGTACCAGAT-TGTTAGGTTGCATGTG
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACA-TGTACCAGATGT-TTAGATCACGTGTG
* *
74128461 TAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTT
64 TAGTACTAAGTGCAGGCTACTATCCGTACCCGATAGTA
* * * * * * * *
74128499 TCGATCACGTGTGTAGTACTAAGTGTAGGCTATTACATGTATCAAATGGTTAGGTCACGTGTGTA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGTTTAGATCACGTGTGTA
* *
74128564 GTACTAAGTGCAGGCTACTA-CCTGTACCGGATTG-A
66 GTACTAAGTGCAGGCTACTATCC-GTACCCGATAGTA
* * ** * *
74128599 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAGTTTTGATCACGTGTG
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGAT-GTTTAGATCACGTGTG
74128663 ATAAATGCCA
Statistics
Matches: 132, Mismatches: 28, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
100 37 0.28
101 94 0.71
102 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (101 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGTTTAGATCACGTGTGTA
GTACTAAGTGCAGGCTACTATCCGTACCCGATAGTA
Found at i:74134491 original size:27 final size:27
Alignment explanation
Indices: 74134399--74134512 Score: 117
Period size: 27 Copynumber: 4.2 Consensus size: 27
74134389 CAGCATGGCT
* *
74134399 ACCAGAACAGATA-ATGTGACAGAGTC
1 ACCAGAACAGATATATGTGGCAGAGCC
74134425 ACCAGATACAGATA-ATAGTGGCAGAGCC
1 ACCAGA-ACAGATATAT-GTGGCAGAGCC
*
74134453 ACCAGAACAGATATATGTGGTAGAGCC
1 ACCAGAACAGATATATGTGGCAGAGCC
* * *
74134480 ACCA-AATTAGATAATTTGTGGCATAGCC
1 ACCAGAA-CAGAT-ATATGTGGCAGAGCC
74134508 ACCAG
1 ACCAG
74134513 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 8 0.11
27 34 0.45
28 33 0.44
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (27 bp):
ACCAGAACAGATATATGTGGCAGAGCC
Found at i:74134508 original size:55 final size:54
Alignment explanation
Indices: 74134399--74134512 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 54
74134389 CAGCATGGCT
* *
74134399 ACCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATAGTGGCAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAAATACAGATAATAGTGGCAGAGCC
** * * *
74134453 ACCAGAACAGATATATGTGGTAGAGCCACCAAAT-TAGATAATTTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAAATACAGATAA-TAGTGGCAGAGCC
74134508 ACCAG
1 ACCAG
74134513 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 19 0.37
55 32 0.63
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAAATACAGATAATAGTGGCAGAGCC
Found at i:74136559 original size:5 final size:5
Alignment explanation
Indices: 74136549--74136626 Score: 59
Period size: 6 Copynumber: 14.2 Consensus size: 5
74136539 TGAATCCTCC
*
74136549 TATTT TATTT TA-TT TATTCT TATTTT TATTTT TCTTTT TATTTT TATTT
1 TATTT TATTT TATTT TATT-T TA-TTT TA-TTT T-ATTT TA-TTT TATTT
*
74136598 TCATTT CAATTT TATTAT TATTT TATTT T
1 T-ATTT -TATTT TATT-T TATTT TATTT T
74136627 GAAAGACATA
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
4 4 0.07
5 22 0.36
6 33 0.54
7 2 0.03
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:74136577 original size:6 final size:6
Alignment explanation
Indices: 74136561--74136626 Score: 64
Period size: 6 Copynumber: 11.3 Consensus size: 6
74136551 TTTTATTTTA
* * * * *
74136561 TTTATT CTTATT TTTATT TTTCTT TTTATT TTTATT TTCA-T TTCAAT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
74136608 TTTATT ATTA-T TTTATT TT
1 TTTATT TTTATT TTTATT TT
74136627 GAAAGACATA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
5 9 0.18
6 40 0.82
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:74140541 original size:28 final size:28
Alignment explanation
Indices: 74140509--74140607 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
74140499 GCAATAAGCC
*
74140509 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
74140537 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
74140565 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
74140594 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74140608 AATTTGTGAT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:74142637 original size:50 final size:50
Alignment explanation
Indices: 74142574--74142702 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 50
74142564 CACACGATCA
* * *
74142574 ACGTGTATTGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATAAGTC
1 ACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTC
* * * **
74142624 ACGTGTGTAGTACTAAGTGCAGGCTTCTACGTGTACCAGATTGATTGGTC
1 ACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTC
* * *
74142674 GCATGCATAGTACTAAGTGCAGGCTACTA
1 ACGTGTATAGTACTAAGTGCAGGCTACTA
74142703 TGCATACCAG
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
ACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTC
Found at i:74142934 original size:16 final size:16
Alignment explanation
Indices: 74142913--74142943 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74142903 AGAATGGAGT
74142913 AAGTGAAATTATGTAG
1 AAGTGAAATTATGTAG
*
74142929 AAGTGAAATTTTGTA
1 AAGTGAAATTATGTA
74142944 ATAAAACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
AAGTGAAATTATGTAG
Found at i:74149803 original size:56 final size:56
Alignment explanation
Indices: 74149717--74149867 Score: 194
Period size: 56 Copynumber: 2.7 Consensus size: 56
74149707 GAAGTATGTG
* * * * * *
74149717 GCATCGATATGCGACTCCTATATATATGTGCGAGTAAGTCCACGTTTAATACGTTA
1 GCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCACATTTAATACATTA
* * *
74149773 GCATCGATATGTGACTCCGATATATGTGTGCAAGTAAGACCACATTTAATACATTG
1 GCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCACATTTAATACATTA
* * *
74149829 GCATCAATATATGACTCCAATATATGTGTACGAGTAAGA
1 GCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGA
74149868 TGATATGTGA
Statistics
Matches: 82, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 82 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (56 bp):
GCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCACATTTAATACATTA
Found at i:74152102 original size:25 final size:25
Alignment explanation
Indices: 74152074--74152143 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
74152064 CTCTTTTAAT
*
74152074 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
74152099 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
74152124 AATTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
74152144 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:74152367 original size:27 final size:28
Alignment explanation
Indices: 74152305--74152368 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
74152295 CAGTCACTTG
*
74152305 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
74152333 CCC-TAAGGGCAAAATTGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
74152359 CCCACAAGGG
1 CCCACAAGGG
74152369 TATCTCGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.19
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:74152379 original size:27 final size:27
Alignment explanation
Indices: 74152349--74152508 Score: 212
Period size: 27 Copynumber: 5.9 Consensus size: 27
74152339 GGGCAAAATT
* * * *
74152349 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
74152376 GTAATTCTACCCTTCAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
74152403 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* **
74152430 ATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
74152457 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
74152484 GTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
74152509 TAGTAATTTT
Statistics
Matches: 113, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 113 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:74152514 original size:27 final size:27
Alignment explanation
Indices: 74152349--74152543 Score: 205
Period size: 27 Copynumber: 7.2 Consensus size: 27
74152339 GGGCAAAATT
* * * * **
74152349 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
74152376 GTAATTCTACCCTTCAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
74152403 GTATTTCTACCCTACAAGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTTA
74152429 GATAATTCTACCCTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTTA
* **
74152457 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
74152484 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* **
74152511 GTAATTTTA-CAAACCAGGGGTATTTTA
1 GTAATTCTACCCTA-CAGGGGTATTTTA
74152538 GTAATT
1 GTAATT
74152544 TACTGATCGA
Statistics
Matches: 143, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
26 6 0.04
27 133 0.93
28 4 0.03
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:74152514 original size:54 final size:54
Alignment explanation
Indices: 74152349--74152516 Score: 255
Period size: 54 Copynumber: 3.1 Consensus size: 54
74152339 GGGCAAAATT
* * * * *
74152349 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTTCAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* *
74152403 GTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* *
74152457 GTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
74152511 GTAATT
1 GTAATT
74152517 TTACAAACCA
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
Found at i:74152612 original size:27 final size:27
Alignment explanation
Indices: 74152501--74152921 Score: 120
Period size: 27 Copynumber: 15.7 Consensus size: 27
74152491 TACCCTACAG
** *
74152501 GGGTATTTTAGTAATTTTACAAA-CCA
1 GGGTATTTTAGTAATTTTGTAAATCGA
** *
74152527 GGGGTATTTTAGTAATTTACT-GATCGA
1 -GGGTATTTTAGTAATTTTGTAAATCGA
* * *
74152554 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTGTAAATCGA
* *
74152581 AGGTATTTTAGTAATTTTGTAAATTGA
1 GGGTATTTTAGTAATTTTGTAAATCGA
***** * *
74152608 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTAGTAATTTTGTAAATCGA
*** * *
74152635 GGGTAAAAT-GATAATTCTATAAATCGA
1 GGGTATTTTAG-TAATTTTGTAAATCGA
*** * * *
74152662 GGGTAAAATGGTAATTCTGTAAATCGT
1 GGGTATTTTAGTAATTTTGTAAATCGA
*** * * *
74152689 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTAGTAATTTTGTAAATCGA
* *** * *
74152716 AGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTATTTTAGTAATTTTGTAAATCGA
*** * * *
74152743 GGGTAAAAT-GATAATTCTATAAATCGG
1 GGGTATTTTAG-TAATTTTGTAAATCGA
* ** * *
74152770 GGGTACTTT-GATAATTTTACAAGTTGA
1 GGGTATTTTAG-TAATTTTGTAAATCGA
*
74152797 GGGTATTTCAGTAA-TTT-TACAATCGA
1 GGGTATTTTAGTAATTTTGTA-AATCGA
* * * *
74152823 CGATATTTT-GATAATTTTATAAATCGG
1 GGGTATTTTAG-TAATTTTGTAAATCGA
* * ** * *
74152850 GGGTACTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTAGTAATTTTGTAAATCGA
* **
74152877 AGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTTAGTAATTTTGTAAATCGA
**
74152904 GGGTATTTCGGTAATTTT
1 GGGTATTTTAGTAATTTT
74152922 ACAAGCTGAG
Statistics
Matches: 316, Mismatches: 67, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
25 2 0.01
26 36 0.11
27 273 0.86
28 5 0.02
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.37
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTGTAAATCGA
Found at i:74152683 original size:81 final size:81
Alignment explanation
Indices: 74152591--74152774 Score: 278
Period size: 81 Copynumber: 2.3 Consensus size: 81
74152581 AGGTATTTTA
* * *
74152591 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGATAATTCTATA
74152656 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *
74152672 GTAATTCTGTAAATCGTGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGATAATTCTATA
74152737 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * *
74152753 ATAATTCTATAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
74152775 CTTTGATAAT
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAATGATAATTCTATA
AATCGAGGGTAAAATG
Found at i:74152801 original size:54 final size:54
Alignment explanation
Indices: 74152600--74152774 Score: 287
Period size: 54 Copynumber: 3.2 Consensus size: 54
74152590 AGTAATTTTG
* * *
74152600 TAAATTGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTA
* *
74152654 TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGTGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTA
*
74152708 TAAATCGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTA
*
74152762 TAAATCGGGGGTA
1 TAAATCGAGGGTA
74152775 CTTTGATAAT
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 111 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (54 bp):
TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTA
Found at i:74152811 original size:81 final size:80
Alignment explanation
Indices: 74152646--74152908 Score: 260
Period size: 81 Copynumber: 3.3 Consensus size: 80
74152636 GGTAAAATGA
* * * *** * *
74152646 TAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGTGGGTAAAATGGTAATTCTATAA
1 TAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAA
* * ** *
74152711 ATCGAAGGTAAAATGG
66 GTTGAAGGT-ATTTAG
* *
74152727 TAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGATAATTTTACAA
1 TAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAA
*
74152792 GTTGAGGGTATTTCAG
66 GTTGAAGGTATTT-AG
* * *** *
74152808 TAATT-T-TACAATCGACGATATTTTGATAATTTTATAAATCGGGGGTACTTTGGTAATTTTACA
1 TAATTCTATA-AATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACA
74152871 AGTTGAAGGTATTTTAG
65 AGTTGAAGGTA-TTTAG
* *
74152888 TAATTTTACAAATCGAGGGTA
1 TAATTCTATAAATCGAGGGTA
74152909 TTTCGGTAAT
Statistics
Matches: 150, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
79 2 0.01
80 67 0.45
81 80 0.53
82 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (80 bp):
TAATTCTATAAATCGAGGGTAAAATGATAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAA
GTTGAAGGTATTTAG
Found at i:74152848 original size:80 final size:81
Alignment explanation
Indices: 74152751--74152922 Score: 265
Period size: 80 Copynumber: 2.1 Consensus size: 81
74152741 GAGGGTAAAA
* *
74152751 TGATAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTTGAGGGTATTTCAGTAATTTTA
1 TGATAATTTTATAAATCGGGGGTACTTTGATAATTTTACAAGTTGAAGGTATTTCAGTAATTTTA
74152816 C-AATCGACGATATTT
66 CAAATCGACGATATTT
* *
74152831 TGATAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGTTGAAGGTATTTTAGTAATTTTA
1 TGATAATTTTATAAATCGGGGGTACTTTGATAATTTTACAAGTTGAAGGTATTTCAGTAATTTTA
* *
74152896 CAAATCGAGGGTATTT
66 CAAATCGACGATATTT
* *
74152912 CGGTAATTTTA
1 TGATAATTTTA
74152923 CAAGCTGAGG
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 62 0.75
81 21 0.25
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
TGATAATTTTATAAATCGGGGGTACTTTGATAATTTTACAAGTTGAAGGTATTTCAGTAATTTTA
CAAATCGACGATATTT
Found at i:74152901 original size:54 final size:53
Alignment explanation
Indices: 74152771--74152949 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 53
74152761 ATAAATCGGG
* * * * * *
74152771 GGTACTTTGATAATTTTACAAGTTGAGGGTATTTCAGTAATTTTACAA-TCGAC
1 GGTATTTTG-TAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAGTTGAA
* * *
74152824 GATATTTTGATAATTTTATAAATCGGGGGTACTTT-GGTAATTTTACAAGTTGAA
1 GGTATTTTG-TAATTTTACAAATCGAGGGTA-TTTCGGTAATTTTACAAGTTGAA
* *
74152878 GGTATTTTAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAGCTGAG
1 GGTATTTT-GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAGTTGAA
*
74152932 GGTATTTCGGTAATTTTA
1 GGTATTT-TGTAATTTTA
74152950 GTAAACTAAA
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
53 40 0.38
54 65 0.61
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (53 bp):
GGTATTTTGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAGTTGAA
Found at i:74152922 original size:27 final size:27
Alignment explanation
Indices: 74152754--74152949 Score: 166
Period size: 27 Copynumber: 7.3 Consensus size: 27
74152744 GGTAAAATGA
* * * *
74152754 TAATTCTATAAATCGGGGGTACTTT-GA
1 TAATTTTACAAATCGAGGGTA-TTTCGG
* * *
74152781 TAATTTTACAAGTTGAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCGG
* * * *
74152808 TAATTTTAC-AATCGACGATATTTTGA
1 TAATTTTACAAATCGAGGGTATTTCGG
* *
74152834 TAATTTTATAAATCGGGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCGG
* * * **
74152861 TAATTTTACAAGTTGAAGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTCGG
74152888 TAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCGG
*
74152915 TAATTTTAC-AAGCTGAGGGTATTTCGG
1 TAATTTTACAAATC-GAGGGTATTTCGG
74152942 TAATTTTA
1 TAATTTTA
74152950 GTAAACTAAA
Statistics
Matches: 133, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
26 27 0.20
27 103 0.77
28 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGG
Found at i:74154883 original size:11 final size:11
Alignment explanation
Indices: 74154867--74154892 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
74154857 ACACATAAAG
74154867 TAATATAAAAA
1 TAATATAAAAA
74154878 TAATATAAAAA
1 TAATATAAAAA
74154889 TAAT
1 TAAT
74154893 TTCTCCAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
TAATATAAAAA
Found at i:74163273 original size:17 final size:19
Alignment explanation
Indices: 74163231--74163274 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
74163221 ATAAAATTTT
*
74163231 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
74163250 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
74163268 AA-TATTA
1 AATTATTA
74163275 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:74163305 original size:12 final size:12
Alignment explanation
Indices: 74163288--74163312 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74163278 TATGTATGTT
74163288 TGAAAATTTTTA
1 TGAAAATTTTTA
74163300 TGAAAATTTTTA
1 TGAAAATTTTTA
74163312 T
1 T
74163313 TATTTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:74165126 original size:28 final size:28
Alignment explanation
Indices: 74165094--74165152 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
74165084 GCGTAGATCA
*
74165094 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
74165122 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
74165150 CGA
1 CGA
74165153 TATACCTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.46, C:0.24, G:0.12, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:74167871 original size:10 final size:10
Alignment explanation
Indices: 74167856--74167880 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
74167846 CTGTTACAAG
74167856 TTCTAATTAT
1 TTCTAATTAT
74167866 TTCTAATTAT
1 TTCTAATTAT
74167876 TTCTA
1 TTCTA
74167881 CACGGCCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (10 bp):
TTCTAATTAT
Found at i:74169168 original size:46 final size:46
Alignment explanation
Indices: 74169058--74169363 Score: 337
Period size: 46 Copynumber: 6.5 Consensus size: 46
74169048 TTTGACATGA
* * *
74169058 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGT
74169108 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* * * *
74169154 TGCCATAGTGTCTTTCAACTATGGTCTTACTGATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTC-TTTTCATGTCACGT
*
74169204 TTCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* ** * * *
74169250 TGCCATGGTATCTTTCAACCATGGTCATACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
** * * *
74169296 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
74169342 TGCCATGGTATCTTTCAACCAT
1 TGCCATGGTATCTTTCAACCAT
74169364 TGTAACACCC
Statistics
Matches: 229, Mismatches: 20, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
45 10 0.04
46 152 0.66
47 3 0.01
49 3 0.01
50 56 0.24
51 5 0.02
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:74169222 original size:96 final size:95
Alignment explanation
Indices: 74169058--74169360 Score: 416
Period size: 96 Copynumber: 3.2 Consensus size: 95
74169048 TTTGACATGA
*
74169058 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCACGTTGCCATGGTATCTTT
1 TGCCATAGTATCTTTCAACTATGGTCTTACT-ATTCATTTTCTGTCACGTTGCCATGGTATCTTT
74169123 CAACCATGGTCTTATTCTTTTCATGTCACGT
65 CAACCATGGTCTTATTCTTTTCATGTCACGT
* * *
74169154 TGCCATAGTGTCTTTCAACTATGGTCTTACTGATTCATTTTCTGTCATGTTTCCATGGTATCTTT
1 TGCCATAGTATCTTTCAACTATGGTCTTACT-ATTCATTTTCTGTCACGTTGCCATGGTATCTTT
74169219 CAACCATGGTCTTATTCTTTTCATGTCACGT
65 CAACCATGGTCTTATTCTTTTCATGTCACGT
* * * * *
74169250 TGCCATGGTATCTTTCAACCATGGTCATAC-A--CA-TTTCATATCAGGTTGCCATGGTATCTTT
1 TGCCATAGTATCTTTCAACTATGGTCTTACTATTCATTTTC-TGTCACGTTGCCATGGTATCTTT
** * * *
74169311 CAACCATGGTCTTACACATTTCATATCAGGT
65 CAACCATGGTCTTATTCTTTTCATGTCACGT
*
74169342 TGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAAC
74169361 CATTGTAACA
Statistics
Matches: 191, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
91 4 0.02
92 67 0.35
94 1 0.01
96 119 0.62
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (95 bp):
TGCCATAGTATCTTTCAACTATGGTCTTACTATTCATTTTCTGTCACGTTGCCATGGTATCTTTC
AACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:74169271 original size:142 final size:138
Alignment explanation
Indices: 74169058--74169363 Score: 373
Period size: 142 Copynumber: 2.2 Consensus size: 138
74169048 TTTGACATGA
* * *
74169058 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCACGTTGCCATGGTATCTTT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCATTTTCTGTCACGTTGCCATGGTATCTTT
* ** * * * *
74169123 CAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATAGTGTCTTTCAACTATGGTCTTACTGAT
62 CAACCATGGTCATACACATTTCATATCACGTTGCCATAGTATCTTTCAACCATGGTCTTAC--A-
* *
74169188 TCATTTTC-TGTCATGT
124 -CA-TTTCATATCAGGT
*
74169204 TTCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TGTCACGTTGCCATGGTATCTTTCAA
* *
74169268 CCATGGTCATACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
65 CCATGGTCATACACATTTCATATCACGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTC
74169333 ATATCAGGT
130 ATATCAGGT
74169342 TGCCATGGTATCTTTCAACCAT
1 TGCCATGGTATCTTTCAACCAT
74169364 TGTAACACCC
Statistics
Matches: 142, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
137 4 0.03
138 29 0.20
140 1 0.01
141 5 0.04
142 79 0.56
143 1 0.01
145 1 0.01
146 22 0.15
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCATACACATTTCATATCACGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:74170814 original size:28 final size:28
Alignment explanation
Indices: 74170749--74170849 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
74170739 ATAGTGAATC
*
74170749 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
74170778 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74170806 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
74170836 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74170850 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74178762 original size:28 final size:28
Alignment explanation
Indices: 74178697--74178797 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
74178687 ATAGTGAATC
*
74178697 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
74178726 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74178754 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
74178784 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74178798 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74186476 original size:8 final size:8
Alignment explanation
Indices: 74186463--74186493 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
74186453 GGGGGAAAGA
74186463 TAAAGTAC
1 TAAAGTAC
74186471 TAAAGTAC
1 TAAAGTAC
74186479 TAAAGTAC
1 TAAAGTAC
74186487 TAAAGTA
1 TAAAGTA
74186494 ATTGTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.26
Consensus pattern (8 bp):
TAAAGTAC
Found at i:74186793 original size:7 final size:7
Alignment explanation
Indices: 74186781--74186809 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
74186771 GTGAGCATCT
74186781 ATATGAG
1 ATATGAG
74186788 ATATGAG
1 ATATGAG
74186795 ATATGAG
1 ATATGAG
74186802 ATA-GAG
1 ATATGAG
74186808 AT
1 AT
74186810 GGTTTCGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
ATATGAG
Found at i:74206414 original size:40 final size:40
Alignment explanation
Indices: 74206352--74206543 Score: 323
Period size: 40 Copynumber: 4.8 Consensus size: 40
74206342 CCAGCATGAT
* * *
74206352 TGCTCTTCAGG-ACCTAGCCCGGATACATCACTAGCAAGAA
1 TGCTCTTC-GGAACTTAGTCCGGATACATCACTAGCACGAA
*
74206392 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
74206432 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
74206472 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
74206512 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
74206544 CTCAATTCTC
Statistics
Matches: 146, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
39 2 0.01
40 144 0.99
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:74208842 original size:49 final size:48
Alignment explanation
Indices: 74208665--74208938 Score: 392
Period size: 47 Copynumber: 5.7 Consensus size: 48
74208655 CCCTTCGGGA
* * * * *
74208665 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
74208712 CCTATCACATA-TATACACTTTCACATTTATCACATTGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
74208759 CTTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74208806 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74208855 CTTATCACATATGTATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
74208904 CTTATCACATATATATATACACTTTCACATTCATC
1 CTTATCAC--ATAT-TATACACTTTCACATTCATC
74208939 GTGTAGAATC
Statistics
Matches: 210, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 95 0.45
49 92 0.44
51 23 0.11
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (48 bp):
CTTATCACATATTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74218793 original size:40 final size:40
Alignment explanation
Indices: 74218748--74218915 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
74218738 CGGAATATAA
74218748 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74218788 CCGGATAGAATAACTCGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74218828 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74218868 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74218908 CCGGATAT
1 CCGGATAT
74218916 CATTCGATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 104 0.99
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74225623 original size:40 final size:39
Alignment explanation
Indices: 74225512--74225663 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
74225502 ATAATCACGT
* * * *
74225512 GCACAAATGCCTTCGGGTCTTAGCCCAGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
74225552 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
74225592 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
74225632 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
74225664 CATTCGATTT
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.02
40 92 0.98
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:74227429 original size:43 final size:43
Alignment explanation
Indices: 74227349--74227464 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
74227339 AGAACATATA
***
74227349 CAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAACAT
1 CAATGCCAATGTCCCAGACAG-GGTCTTACACAAAATCAAACAT
* * *
74227392 CAATGCCACTGTCCCAGACAGGGTCTTACACAAAATCAGATAT
1 CAATGCCAATGTCCCAGACAGGGTCTTACACAAAATCAAACAT
* *
74227435 -GATGCCAATGTCCCA-AGCATGGTCTTACAC
1 CAATGCCAATGTCCCAGA-CAGGGTCTTACAC
74227465 GTAAAACAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 25 0.40
43 35 0.56
44 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACAGGGTCTTACACAAAATCAAACAT
Found at i:74229218 original size:48 final size:48
Alignment explanation
Indices: 74229155--74229277 Score: 128
Period size: 48 Copynumber: 2.6 Consensus size: 48
74229145 ACTCATATCT
* *
74229155 CAATGCCATAG-CCCAGTTATGGTCTTACATGATG-TCTCATA-TTGATGC
1 CAATGCCAT-GTCCCAGTTATGGTCTTACATG-GGATCTCA-ACTCGATGC
**
74229203 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCAACTCGATGC
1 CAATGCCATGTCCCAGTTATGGTCTTACATGGGATCTCAACTCGATGC
* *
74229251 CGATGCCATATCCCA-TATATGGTCTTA
1 CAATGCCATGTCCCAGT-TATGGTCTTA
74229278 TACGGGACCT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
47 3 0.05
48 60 0.95
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
CAATGCCATGTCCCAGTTATGGTCTTACATGGGATCTCAACTCGATGC
Found at i:74229344 original size:94 final size:94
Alignment explanation
Indices: 74229212--74229385 Score: 217
Period size: 94 Copynumber: 1.9 Consensus size: 94
74229202 CCAATGCCAT
* * * *
74229212 GTCCCAGACATGGTCTTACATGGGATCTCAACTCGATGCCGATGCCATATCCCATATATGGTCTT
1 GTCCCAAACATGGTCTTACATGGGATCTCAAATCGATGCCGATGCCATATCCCAAACATGGTCTT
*
74229277 ATACGGGACCTCATACGACGTGATGCTAG
66 ATACAGGACCTCATACGACGTGATGCTAG
* * * * *
74229306 GTCCCAAACGTGGTCTTATATGAGG-TCTCATAAT-GATGCTGATGCCATGTCCTAAACATGGTC
1 GTCCCAAACATGGTCTTACATG-GGATCTCA-AATCGATGCCGATGCCATATCCCAAACATGGTC
*
74229369 TTATACAGGATCTCATA
64 TTATACAGGACCTCATA
74229386 TCAACTCCAT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
94 63 0.94
95 4 0.06
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (94 bp):
GTCCCAAACATGGTCTTACATGGGATCTCAAATCGATGCCGATGCCATATCCCAAACATGGTCTT
ATACAGGACCTCATACGACGTGATGCTAG
Found at i:74229371 original size:48 final size:48
Alignment explanation
Indices: 74229189--74229385 Score: 168
Period size: 48 Copynumber: 4.1 Consensus size: 48
74229179 TTACATGATG
* * * *
74229189 TCTCATATTGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TCTCATAATGATGCCGATGCCATGTCCCAAACATGGTCTTATATGGGA
* * * * *
74229237 TCTCA-ACTCGATGCCGATGCCATATCCCATATATGGTCTTATACGGGA
1 TCTCATAAT-GATGCCGATGCCATGTCCCAAACATGGTCTTATATGGGA
* * * * * * *
74229285 CCTCAT-ACGACG-TGATGCTAGGTCCCAAACGTGGTCTTATATGAGG-
1 TCTCATAATGATGCCGATGCCATGTCCCAAACATGGTCTTATATG-GGA
* * **
74229331 TCTCATAATGATGCTGATGCCATGTCCTAAACATGGTCTTATACAGGA
1 TCTCATAATGATGCCGATGCCATGTCCCAAACATGGTCTTATATGGGA
74229379 TCTCATA
1 TCTCATA
74229386 TCAACTCCAT
Statistics
Matches: 115, Mismatches: 28, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
46 28 0.24
47 13 0.11
48 74 0.64
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (48 bp):
TCTCATAATGATGCCGATGCCATGTCCCAAACATGGTCTTATATGGGA
Found at i:74233285 original size:44 final size:44
Alignment explanation
Indices: 74233237--74233320 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
74233227 CAAAGTTTTC
*
74233237 TTTTTGATTCACATCTGGTTTTAAATGATTTCTACTTTTCCTCA
1 TTTTTGATTCACATCTGGTTTTAAACGATTTCTACTTTTCCTCA
* *
74233281 TTTTTTATTCACCTCTGGTTTTAAACGATTTCTACTTTTC
1 TTTTTGATTCACATCTGGTTTTAAACGATTTCTACTTTTC
74233321 TTTGTGTCGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.08, T:0.54
Consensus pattern (44 bp):
TTTTTGATTCACATCTGGTTTTAAACGATTTCTACTTTTCCTCA
Found at i:74234220 original size:28 final size:29
Alignment explanation
Indices: 74234135--74234225 Score: 130
Period size: 29 Copynumber: 3.2 Consensus size: 29
74234125 GAAAGCATGT
* *
74234135 ATATGAATGTGATTTCAGCCTAATGGGCC
1 ATATGAATGAGATTTCGGCCTAATGGGCC
*
74234164 ATATGAATGCGATTTCGGCCTAATGGGCC
1 ATATGAATGAGATTTCGGCCTAATGGGCC
* *
74234193 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGAGATTTCGGCCTAATGGGCC
74234221 ATATG
1 ATATG
74234226 CATGTATTGT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 19 0.33
29 38 0.67
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGAGATTTCGGCCTAATGGGCC
Found at i:74238443 original size:16 final size:16
Alignment explanation
Indices: 74238422--74238455 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
74238412 TCGGCAAATC
*
74238422 CCGAAATGTCGAAAAG
1 CCGAAATGCCGAAAAG
74238438 CCGAAATGCCGAAAAG
1 CCGAAATGCCGAAAAG
74238454 CC
1 CC
74238456 AAAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.26, G:0.24, T:0.09
Consensus pattern (16 bp):
CCGAAATGCCGAAAAG
Found at i:74238757 original size:28 final size:29
Alignment explanation
Indices: 74238668--74238763 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
74238658 GAAAGCACAT
74238668 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
74238697 ATAGGAATGTGATTTCGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
74238726 ATATGAATGAGA-TTGGGTCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
74238754 ATATGCATGT
1 ATATGAATGT
74238764 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
28 21 0.36
29 37 0.64
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:74243933 original size:23 final size:23
Alignment explanation
Indices: 74243881--74244005 Score: 121
Period size: 23 Copynumber: 5.3 Consensus size: 23
74243871 TACCGATATA
* * *
74243881 TCAGCTCGTAAGAGCTTACTATTT
1 TCAGCTCATTAGAGCTTACT-GTT
*
74243905 TCAGCTCATTGGAGCTTACTGTT
1 TCAGCTCATTAGAGCTTACTGTT
74243928 TCAGCTCATATA-AGCTTACTG-T
1 TCAGCTCAT-TAGAGCTTACTGTT
*
74243950 TCAGCTCGA-TAGAGCTTACAGTT
1 TCAGCTC-ATTAGAGCTTACTGTT
* *
74243973 TCAGCTCAATAGAGCTTATTGTT
1 TCAGCTCATTAGAGCTTACTGTT
74243996 CATCAGCTCA
1 --TCAGCTCA
74244006 AGAGGAGCTT
Statistics
Matches: 86, Mismatches: 8, Indels: 13
0.80 0.07 0.12
Matches are distributed among these distances:
21 2 0.02
22 17 0.20
23 41 0.48
24 18 0.21
25 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (23 bp):
TCAGCTCATTAGAGCTTACTGTT
Found at i:74246110 original size:16 final size:16
Alignment explanation
Indices: 74246086--74246120 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
74246076 GTAGATCGAC
*
74246086 AAATCCCGAAAAGCTG
1 AAATCCCGAAAAGCCG
*
74246102 AAATGCCGAAAAGCCG
1 AAATCCCGAAAAGCCG
74246118 AAA
1 AAA
74246121 GTTTGGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.23, G:0.20, T:0.09
Consensus pattern (16 bp):
AAATCCCGAAAAGCCG
Found at i:74246375 original size:28 final size:28
Alignment explanation
Indices: 74246340--74246418 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
74246330 CTTTAAATGC
*
74246340 AATTTGGGCCTAGT-GGCCATATGAATG
1 AATTTGGGCCTAGTGGGCCATATGAAAG
* * *
74246367 TGATTTGGGCCTAATGGGCCACATGAAAG
1 -AATTTGGGCCTAGTGGGCCATATGAAAG
*
74246396 AAATTGGGCCTAGTGGGCCATAT
1 AATTTGGGCCTAGTGGGCCATAT
74246419 ATAGGTATGA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 31 0.74
29 11 0.26
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (28 bp):
AATTTGGGCCTAGTGGGCCATATGAAAG
Found at i:74247869 original size:17 final size:18
Alignment explanation
Indices: 74247827--74247875 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
74247817 AGTTGAAAAG
74247827 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
74247846 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
74247863 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
74247876 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:74248763 original size:40 final size:40
Alignment explanation
Indices: 74248697--74248863 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74248687 AAATTGAATG
* * *
74248697 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
74248736 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
74248776 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74248816 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74248856 ATATCCGG
1 ATATCCGG
74248864 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74255881 original size:17 final size:18
Alignment explanation
Indices: 74255839--74255887 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
74255829 AGTTGAAAAG
74255839 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
74255858 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
74255875 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
74255888 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:74256775 original size:40 final size:40
Alignment explanation
Indices: 74256709--74256875 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74256699 AAATTGAATG
* * *
74256709 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
74256748 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
74256788 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74256828 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74256868 ATATCCGG
1 ATATCCGG
74256876 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74258491 original size:41 final size:41
Alignment explanation
Indices: 74258446--74258528 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
74258436 AATATAAGTC
*
74258446 CTTGTTTGAAATTGGGGCTTAAACTAGAAGTCTTTAAATGG
1 CTTGTTTGAAAATGGGGCTTAAACTAGAAGTCTTTAAATGG
*
74258487 CTTGTTTGAAAATGGGGTTTAAACTAGAAGTCTTTAAATGG
1 CTTGTTTGAAAATGGGGCTTAAACTAGAAGTCTTTAAATGG
74258528 C
1 C
74258529 AAATAGATCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.36
Consensus pattern (41 bp):
CTTGTTTGAAAATGGGGCTTAAACTAGAAGTCTTTAAATGG
Found at i:74259614 original size:27 final size:26
Alignment explanation
Indices: 74259560--74259674 Score: 70
Period size: 27 Copynumber: 4.3 Consensus size: 26
74259550 TTAGTTTACC
* * *
74259560 AAATTACTGAAATACCCCC-AGTTGTA
1 AAATTAC-CAAATACCCCCGATTTATA
*
74259586 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAA-TACCCCCGATTTATA
* * *
74259613 AAACTACCCAAATATCCTCGATTTATA
1 AAATTA-CCAAATACCCCCGATTTATA
* *** *
74259640 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACC-AAATACCCCCGATTTATA
*
74259667 GAATTACC
1 AAATTACC
74259675 GTTTTACCCT
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
25 3 0.04
26 16 0.23
27 47 0.66
28 5 0.07
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.30
Consensus pattern (26 bp):
AAATTACCAAATACCCCCGATTTATA
Found at i:74259656 original size:54 final size:54
Alignment explanation
Indices: 74259598--74259764 Score: 129
Period size: 54 Copynumber: 3.1 Consensus size: 54
74259588 ATTACCAAAG
* * *
74259598 TACCCCCGGTTTATAAAACTACCCAAATATCCTCGATTTATAGAATTACCGTTT
1 TACCCCCGATTTATAAAACTACCCAAATACCCTCGATTTATAGAATTACCATTT
* * * **** *
74259652 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTATCATTT
1 TACCCCCGATTTATAAAACTACCCAAATACCCTCGATTTATAGAATTACCATTT
* * * * * ** * * *
74259706 TACCCACAATTTATAGAATTA-TCATTTTACCCTCGATTTATAAAATTATCGTTT
1 TACCCCCGATTTATAAAACTACCCA-AATACCCTCGATTTATAGAATTACCATTT
74259760 TACCC
1 TACCC
74259765 TCAATTTACA
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCCCGATTTATAAAACTACCCAAATACCCTCGATTTATAGAATTACCATTT
Found at i:74259675 original size:27 final size:27
Alignment explanation
Indices: 74259628--74259808 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
74259618 ACCCAAATAT
74259628 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
74259655 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
74259682 CCTCGATTTATAGAATTATCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * * *
74259709 CCACAATTTATAGAATTATCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
74259736 CCTCGATTTATAAAATTATCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
74259763 CCTCAATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
74259790 CTTCGATTTACAAAATTAC
1 CCTCGATTTATAGAATTAC
74259809 TAAAATACTC
Statistics
Matches: 139, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:74259858 original size:27 final size:28
Alignment explanation
Indices: 74259801--74259941 Score: 155
Period size: 27 Copynumber: 5.2 Consensus size: 28
74259791 TTCGATTTAC
* * **
74259801 AAAATTACTAAAATACTCT-TGGTTTAC
1 AAAATTACCAAAATACCCTCTGGTTTGT
* **
74259828 AAAATTACCAAAATACCCTC-GATCAGT
1 AAAATTACCAAAATACCCTCTGGTTTGT
74259855 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACCAAAATACCCTCTGGTTTGT
* * *
74259882 AAAATGACTAAAATACCCCCTGGTTTGT
1 AAAATTACCAAAATACCCTCTGGTTTGT
*
74259910 AAAATTACCAAAATACCCT-TGATTTGT
1 AAAATTACCAAAATACCCTCTGGTTTGT
74259937 AAAAT
1 AAAAT
74259942 ATCGAAATGC
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 69 0.73
28 25 0.26
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (28 bp):
AAAATTACCAAAATACCCTCTGGTTTGT
Found at i:74259976 original size:27 final size:27
Alignment explanation
Indices: 74259944--74260157 Score: 286
Period size: 27 Copynumber: 8.0 Consensus size: 27
74259934 TGTAAAATAT
*
74259944 CGAAATGCCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * *
74259971 TAAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
74259998 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * *
74260025 TAAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74260052 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74260079 TGAAATACCCC-GTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
74260105 CGAAATACCCTTGTAGGGAAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
74260132 CAAAATACCCCTGTAGGGTAGAATTA
1 CGAAATACCCCTGTAGGGTAGAATTA
74260158 ACAAGATACC
Statistics
Matches: 160, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.14
27 137 0.86
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:74260168 original size:54 final size:54
Alignment explanation
Indices: 74259944--74260157 Score: 322
Period size: 54 Copynumber: 4.0 Consensus size: 54
74259934 TGTAAAATAT
* * *
74259944 CGAAATGCCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
* *
74259998 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
* *
74260052 CGAAATACCCCTATAGGGTAGAATTACTGAAATACCCC-GTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
* * * *
74260105 CGAAATACCCTTGTAGGGAAGAAATACCAAAATACCCCTGTAGGGTAGAATTA
1 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTA
74260158 ACAAGATACC
Statistics
Matches: 144, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
53 45 0.31
54 99 0.69
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (54 bp):
CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTAC
Found at i:74260425 original size:25 final size:25
Alignment explanation
Indices: 74260391--74260485 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
74260381 AGGAAGTGCT
74260391 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
74260416 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
74260441 AAAAGGGCTTTGCCCCAGTTTA-TCA
1 AAAAGGGCTTTGCCCCAGTTTACT-G
*
74260466 AAAAGGGGTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
74260486 ATTAAAAAGG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:74263494 original size:27 final size:27
Alignment explanation
Indices: 74263464--74263643 Score: 236
Period size: 27 Copynumber: 6.7 Consensus size: 27
74263454 ACCAAAATAT
*
74263464 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
* * *
74263491 CCTCAATTTACAAAATTATCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
* * *
74263518 ACTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
* * *
74263545 CCTCGATTTATATAATTATCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
74263572 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
*
74263599 CCTCGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTAC
* *
74263626 CCTC-CTTTACAAAATTAC
1 CCTCGATTTACAGAATTAC
74263644 TAAAATACCC
Statistics
Matches: 134, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 13 0.10
27 121 0.90
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
CCTCGATTTACAGAATTACCGTTTTAC
Found at i:74263626 original size:54 final size:54
Alignment explanation
Indices: 74263464--74263643 Score: 263
Period size: 54 Copynumber: 3.4 Consensus size: 54
74263454 ACCAAAATAT
* *
74263464 CCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTATCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTAC
* * * * *
74263518 ACTCGATTTATAGAATTACCATTTTACCCTCGATTTATATAATTATCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTAC
*
74263572 CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTAC
1 CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTAC
* *
74263626 CCTC-CTTTACAAAATTAC
1 CCTCGATTTACAGAATTAC
74263644 TAAAATACCC
Statistics
Matches: 113, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 12 0.11
54 101 0.89
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
CCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTAC
Found at i:74263662 original size:53 final size:54
Alignment explanation
Indices: 74263596--74263734 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 54
74263586 ATTACCGTTT
****
74263596 TACCCTCGATTTACAAAATTACCGTTTTA-CCCTCCTTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCCTCCTTTACAAAATTACTAAAA
* * ** *
74263649 TACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTATAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCCTCCTTTACAAAATTACTAAAA
* ** *
74263703 TACCC-CTAGTTTGTAAAATTTCCAAAATACCC
1 TACCCTCGA-TTTACAAAATTACCAAAATACCC
74263735 TTGATTTGTA
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
53 23 0.33
54 46 0.67
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCCTCCTTTACAAAATTACTAAAA
Found at i:74263669 original size:27 final size:27
Alignment explanation
Indices: 74263631--74263763 Score: 142
Period size: 27 Copynumber: 5.0 Consensus size: 27
74263621 TTTACCCTCC
* *
74263631 TTTACAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTGG
74263658 TTTACAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCCTGG
* * *
74263685 TTTATAAAATTACTAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCCTGG
** * * *
74263712 TTTGTAAAATTTCCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCCTGG
** *
74263739 TTTGTAAAA-TACCGAAATACCCCTG
1 TTTACAAAATTACCAAAATACCCCTG
74263764 TAGGGTAGAA
Statistics
Matches: 92, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 13 0.14
27 79 0.86
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCCTGG
Found at i:74263721 original size:54 final size:54
Alignment explanation
Indices: 74263631--74263762 Score: 158
Period size: 54 Copynumber: 2.5 Consensus size: 54
74263621 TTTACCCTCC
* * * *
74263631 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGG
1 TTTATAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGA
** * *
74263685 TTTATAAAATTACTAAAATACCCCTAGTTTGTAAAATTTCCAAAATACCCTTGA
1 TTTATAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGA
* **
74263739 TTTGTAAAA-TACCGAAATACCCCT
1 TTTATAAAATTACTAAAATACCCCT
74263763 GTAGGGTAGA
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 13 0.19
54 54 0.81
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (54 bp):
TTTATAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGA
Found at i:74263782 original size:27 final size:27
Alignment explanation
Indices: 74263748--74263868 Score: 163
Period size: 27 Copynumber: 4.5 Consensus size: 27
74263738 ATTTGTAAAA
74263748 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
** *
74263775 TAATGAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
* * *
74263802 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAT
*
74263829 TACCGAAATACTCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAT
74263856 TACC-AAGATACCC
1 TACCGAA-ATACCC
74263869 ATTTGGGGTA
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.03
27 77 0.97
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAT
Found at i:74263867 original size:81 final size:80
Alignment explanation
Indices: 74263719--74263868 Score: 205
Period size: 81 Copynumber: 1.9 Consensus size: 80
74263709 TAGTTTGTAA
* ** **
74263719 AATTTCCAAAATACCCTTGATTTGTAAAATACCGAAATACCCCTGTAGGGTAGAATTAATGAAAT
1 AATTACCAAAATACCCTTGATGGGTAAAATACCGAAATACCCCTGTAGGGTAGAATTAACCAAAT
74263784 ACCCCTATAGGGTAG
66 ACCCCTATAGGGTAG
*
74263799 AATTACCAAAATACCCTTG-TAGGGTAGAAATACCGAAATACTCCTGTAGGGTAGAATT-ACCAA
1 AATTACCAAAATACCCTTGAT-GGGTA-AAATACCGAAATACCCCTGTAGGGTAGAATTAACCAA
74263862 GATACCC
64 -ATACCC
74263869 ATTTGGGGTA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 1 0.02
80 24 0.39
81 36 0.59
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (80 bp):
AATTACCAAAATACCCTTGATGGGTAAAATACCGAAATACCCCTGTAGGGTAGAATTAACCAAAT
ACCCCTATAGGGTAG
Found at i:74263878 original size:54 final size:53
Alignment explanation
Indices: 74263748--74263882 Score: 155
Period size: 54 Copynumber: 2.5 Consensus size: 53
74263738 ATTTGTAAAA
* * * **
74263748 TACCGAAATACCCCTGTAGGGTAGAATTAATGAAATACCCCTATAGGGTAGAAT
1 TACCAAAATACCCTTGTAGGGTA-AAATACCGAAATACCCCTATAGGGTAGAAT
* *
74263802 TACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACTCCTGTAGGGTAGAAT
1 TACCAAAATACCCTTGTAGGGTA-AAATACCGAAATACCCCTATAGGGTAGAAT
* *
74263856 TACCAAGATACCCATT-TGGGGTAAAAT
1 TACCAAAATACCC-TTGTAGGGTAAAAT
74263883 CATCATTTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
53 4 0.06
54 65 0.92
55 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (53 bp):
TACCAAAATACCCTTGTAGGGTAAAATACCGAAATACCCCTATAGGGTAGAAT
Found at i:74264123 original size:25 final size:25
Alignment explanation
Indices: 74264091--74264210 Score: 186
Period size: 25 Copynumber: 4.8 Consensus size: 25
74264081 AGGAAGTGCT
* *
74264091 AAAAGGGCTTTGCCCTAGTTTACCT
1 AAAAGGGCTTTGCCCCAGTTTACCG
74264116 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
74264141 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
74264166 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
74264191 AAAAGGGGTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
74264211 ATTAAAAGAG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 88 1.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:74267228 original size:27 final size:27
Alignment explanation
Indices: 74267198--74267377 Score: 191
Period size: 27 Copynumber: 6.7 Consensus size: 27
74267188 ACGCAAATAT
74267198 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
74267225 CCTCAATTTATAGAATTACTGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
** *
74267252 TTTCGATTTATAGAATTA-CATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * **
74267278 TCTTGATTTATAGAATTATTGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * * *
74267305 CCCCGATTTACAGAATTATCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * *
74267332 CCTCGATTTACAGAGTTGCCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
74267359 CCTCGATTTACAAAATTAC
1 CCTCGATTTATAGAATTAC
74267378 TAAAATACCC
Statistics
Matches: 127, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
26 22 0.17
27 105 0.83
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.43
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:74267441 original size:81 final size:81
Alignment explanation
Indices: 74267358--74267524 Score: 201
Period size: 81 Copynumber: 2.1 Consensus size: 81
74267348 TGCCGTTTTA
* * *
74267358 CCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAG
1 CCCT-GATTTACAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAACACCCTTGATCAG
74267423 TAAAATTACCAAAATAC
65 TAAAATTACCAAAATAC
* ** ** * **
74267440 CCCTGGTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAACACTCTTGATTTGT
1 CCCTGATTTACAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAACACCCTTGATCAGT
**
74267505 AAAA-TACTGAAATAC
66 AAAATTACCAAAATAC
74267520 CCCTG
1 CCCTG
74267525 TAGGGTAGAA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 14 0.19
81 54 0.75
82 4 0.06
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
CCCTGATTTACAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAACACCCTTGATCAGT
AAAATTACCAAAATAC
Found at i:74267480 original size:54 final size:55
Alignment explanation
Indices: 74267370--74267523 Score: 179
Period size: 54 Copynumber: 2.9 Consensus size: 55
74267360 CTCGATTTAC
* ** * *
74267370 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTTGATCAGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGATCAGT
* **
74267424 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTAG-TTTGT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGATCAGT
* * * *
74267478 AAAATTACCAAAACACTCTTGATTTGTAAAA-TACTGAAATACCCCT
1 AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCT
74267524 GTAGGGTAGA
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 14 0.16
54 67 0.78
55 5 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (55 bp):
AAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAGATCAGT
Found at i:74267503 original size:27 final size:27
Alignment explanation
Indices: 74267356--74267509 Score: 157
Period size: 27 Copynumber: 5.7 Consensus size: 27
74267346 GTTGCCGTTT
* ** *
74267356 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
74267383 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
**
74267410 TACCCTTGATCAGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * *
74267437 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
74267464 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAA
* *
74267491 CACTCTTGATTTGTAAAAT
1 TACCCTTGATTTGTAAAAT
74267510 ACTGAAATAC
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 106 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:74267547 original size:27 final size:27
Alignment explanation
Indices: 74267509--74267745 Score: 247
Period size: 27 Copynumber: 9.1 Consensus size: 27
74267499 ATTTGTAAAA
74267509 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * * *
74267536 TACTAAAATACCCTTGTAAGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
74267563 TACCGGAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * *
74267590 TACTGAAATACCCTTATAAGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
74267617 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
74267644 TACTGAAATA-CCCTATAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
74267670 TACCGAAATA-CCC-----GGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
74267691 TACCG-AATACCCCCGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * * *
74267717 TACTGAGATACCCATGTGGGGTAAAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
74267744 TA
1 TA
74267746 TATTTTGCCC
Statistics
Matches: 173, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
20 4 0.02
21 15 0.09
26 38 0.22
27 116 0.67
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TACTGAAATACCCCTGTAGGGTAGAAT
Found at i:74267576 original size:54 final size:54
Alignment explanation
Indices: 74267506--74267682 Score: 284
Period size: 54 Copynumber: 3.3 Consensus size: 54
74267496 TTGATTTGTA
* * *
74267506 AAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTGTAAGGTAG
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAAGGTAG
*
74267560 AAATACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAAGGTAG
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAAGGTAG
* *
74267614 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCC-TATAGGGTAG
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAAGGTAG
*
74267667 AATTACCGAAATACCC
1 AAATACCGAAATACCC
74267683 GGTAGAAATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
53 25 0.22
54 91 0.78
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (54 bp):
AAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTATAAGGTAG
Found at i:74267686 original size:21 final size:20
Alignment explanation
Indices: 74267662--74267702 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
74267652 TACCCTATAG
*
74267662 GGTAGAATTACCGAAATACCC
1 GGTAGAAATACCG-AATACCC
74267683 GGTAGAAATACCGAATACCC
1 GGTAGAAATACCGAATACCC
74267703 CCGTAGGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (20 bp):
GGTAGAAATACCGAATACCC
Found at i:74267708 original size:21 final size:21
Alignment explanation
Indices: 74267663--74267708 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
74267653 ACCCTATAGG
* *
74267663 GTAGAATTACCGAAATACCCG
1 GTAGAAATACCGAAATACCCC
74267684 GTAGAAATACCG-AATACCCCC
1 GTAGAAATACCGAAATA-CCCC
74267705 GTAG
1 GTAG
74267709 GGTAGAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (21 bp):
GTAGAAATACCGAAATACCCC
Found at i:74267990 original size:25 final size:26
Alignment explanation
Indices: 74267956--74268014 Score: 104
Period size: 25 Copynumber: 2.3 Consensus size: 26
74267946 GTGCTAAAAC
74267956 GGCTTTGCCCCAGTTTACCG-AAAGG
1 GGCTTTGCCCCAGTTTACCGAAAAGG
74267981 GGCTTTGCCCCAGTTTACCGAAAAGG
1 GGCTTTGCCCCAGTTTACCGAAAAGG
74268007 GG-TTTGCC
1 GGCTTTGCC
74268015 TCAATTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 26 0.79
26 7 0.21
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (26 bp):
GGCTTTGCCCCAGTTTACCGAAAAGG
Found at i:74270032 original size:69 final size:68
Alignment explanation
Indices: 74269921--74270171 Score: 344
Period size: 69 Copynumber: 3.7 Consensus size: 68
74269911 GGAATCTATA
* * * *
74269921 GGCTACATTTCAGTGGTAGCTTCGGCTACAGTATAATGGTAGCTCTAGCTACATCTCAGTGGTAG
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATATAGTGGTAGCT-TAGCTACATCTCAGTGGTAG
74269986 CTTC
65 CTTC
* * *
74269990 GGCTACAATACAGTGCTAGCTTCGGCTACAATATAGTGGTAGCTTCGGCTACATATCAGTGGTAG
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTT-AGCTACATCTCAGTGGTAG
74270055 CTTC
65 CTTC
* * * *
74270059 AGCTAAAATACAGTGGTAGCTTCGGCTA-AATCTTAGTGGTAGCTTCGACTACATCTCAGTGGTA
1 GGCTACAATACAGTGGTAGCTTCGGCTACAAT-ATAGTGGTAGCTTAG-CTACATCTCAGTGGTA
74270123 GCTTC
64 GCTTC
*
74270128 GGCGACAATACAGTGGTAGCTT-GGCTACAATATAGTGGTAGCTT
1 GGCTACAATACAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTT
74270172 CGGCTGCGTT
Statistics
Matches: 161, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
68 22 0.14
69 139 0.86
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (68 bp):
GGCTACAATACAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTAGCTACATCTCAGTGGTAGC
TTC
Found at i:74270206 original size:23 final size:23
Alignment explanation
Indices: 74269921--74270210 Score: 288
Period size: 23 Copynumber: 12.7 Consensus size: 23
74269911 GGAATCTATA
* *
74269921 GGCTACATTTCAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* * *
74269944 GGCTACAGTATAATGGTAGC-TC
1 GGCTACAATACAGTGGTAGCTTC
* *
74269966 TAGCTAC-ATCTCAGTGGTAGCTTC
1 -GGCTACAAT-ACAGTGGTAGCTTC
*
74269990 GGCTACAATACAGTGCTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
*
74270013 GGCTACAATATAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
74270036 GGCTAC-ATATCAGTGGTAGCTTC
1 GGCTACAATA-CAGTGGTAGCTTC
* *
74270059 AGCTAAAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
74270082 GGCTA-AAT-CTTAGTGGTAGCTTC
1 GGCTACAATAC--AGTGGTAGCTTC
* *
74270105 GACTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
74270128 GGCGACAATACAGTGGTAGCTT-
1 GGCTACAATACAGTGGTAGCTTC
*
74270150 GGCTACAATATAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* ** *
74270173 GGCTGCGTTACAGTGATAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* *
74270196 GGCTATATTACAGTG
1 GGCTACAATACAGTG
74270211 TGGCACTTTG
Statistics
Matches: 222, Mismatches: 32, Indels: 26
0.79 0.11 0.09
Matches are distributed among these distances:
21 1 0.00
22 29 0.13
23 182 0.82
24 9 0.04
25 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (23 bp):
GGCTACAATACAGTGGTAGCTTC
Found at i:74277650 original size:42 final size:42
Alignment explanation
Indices: 74277603--74277756 Score: 175
Period size: 42 Copynumber: 3.6 Consensus size: 42
74277593 TACTATAACA
* * *
74277603 ATGCCATATCCCAGATATGGCCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAG-TCTCATATCG
* * *
74277645 ATGCCAATAGCCCAGCTATGGTCTTACATGAAGTATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* * * *
74277688 ATGCCATATCCTAGATATGGTCTTACACGAAGTCCCATATAG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* *
74277730 ATGCCATATCCTAGATATGGTATTACA
1 ATGCCATATCCCAGATATGGTCTTACA
74277757 CATAGTCTTA
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 61 0.64
43 34 0.35
44 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:74281363 original size:43 final size:44
Alignment explanation
Indices: 74281207--74281365 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 44
74281197 GGTTATCAAG
* *
74281207 TTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TA
1 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGATA
* * * *
74281250 TTGAGATTACGTGTAAGACAATGTCTGGGACATTGGCATC-ATA
1 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGATA
* * * * *
74281293 TTATGATTTCGTGTAAGACCTTGTCTAGGACAGTGGCATCGATA
1 TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGATA
* *
74281337 -TGTGATAACATGTAAGACCATATCTAGGA
1 TTGTGATTACATGTAAGACCATGTCTAGGA
74281366 TACGTCATTG
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
43 94 0.97
44 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (44 bp):
TTGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGATA
Found at i:74285586 original size:27 final size:25
Alignment explanation
Indices: 74285552--74285626 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 25
74285542 TCATTACGGA
74285552 GTTTGCCACAAAGGCATTCATTTCAT
1 GTTTGCCACAAAGGC-TTCATTTCAT
* **
74285578 GTTTCGCCACAAGGGCTTTTTTTCAT
1 GTTT-GCCACAAAGGCTTCATTTCAT
*
74285604 ATTATGCCACAAAGGCTATCATT
1 GTT-TGCCACAAAGGCT-TCATT
74285627 GCAGGGTTCG
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (25 bp):
GTTTGCCACAAAGGCTTCATTTCAT
Found at i:74294663 original size:26 final size:26
Alignment explanation
Indices: 74294632--74294739 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74294622 TGAAATGCCC
*
74294632 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
74294658 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
74294684 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
74294710 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
74294736 ATCA
1 ATCA
74294740 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:74295889 original size:22 final size:24
Alignment explanation
Indices: 74295864--74295907 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
74295854 GGCACGTTAT
74295864 TTTTTGTTC-TGT-TTCTTCTTGG
1 TTTTTGTTCTTGTGTTCTTCTTGG
74295886 TTTTTGTTCTTGTGTTCTTCTT
1 TTTTTGTTCTTGTGTTCTTCTT
74295908 TTTGCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 9 0.45
23 3 0.15
24 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.16, T:0.70
Consensus pattern (24 bp):
TTTTTGTTCTTGTGTTCTTCTTGG
Found at i:74297595 original size:21 final size:21
Alignment explanation
Indices: 74297571--74297610 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74297561 CTGCAATATC
*
74297571 TATTTGACTATTTGATTGAAT
1 TATTTGACTATCTGATTGAAT
*
74297592 TATTTGACTGTCTGATTGA
1 TATTTGACTATCTGATTGA
74297611 TTAAGGAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.17, T:0.50
Consensus pattern (21 bp):
TATTTGACTATCTGATTGAAT
Found at i:74302955 original size:18 final size:20
Alignment explanation
Indices: 74302919--74302965 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74302909 AGTTGTAAGT
74302919 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
74302939 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
74302958 ATGATATA
1 AT-ATATA
74302966 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Done.