Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 259 of 427
Found at i:74303395 original size:50 final size:50
Alignment explanation
Indices: 74303320--74303545 Score: 215
Period size: 50 Copynumber: 4.5 Consensus size: 50
74303310 GTGAGTCGTG
* *
74303320 TGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
* * * * * * * *
74303370 TGTGTAGTACTAAGTGCAGGCTACTATGCGTTCCCG-TTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACA
* * * * * *
74303421 TGTGTAGTACTAAGTGTAGGCTAATACGTGTATCA-AATGGTCAAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGAT-AGGTCACA
* ** * *
74303471 TGTGTAGTACT-AGTACAGGAAACTACCTGTACTAGATTGATAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
74303520 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74303546 TGCATACCAG
Statistics
Matches: 132, Mismatches: 38, Indels: 12
0.73 0.21 0.07
Matches are distributed among these distances:
49 37 0.28
50 61 0.46
51 34 0.26
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACA
Found at i:74303778 original size:16 final size:16
Alignment explanation
Indices: 74303757--74303787 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74303747 GAATGGAGTA
74303757 AGTGAAATTATGTAAC
1 AGTGAAATTATGTAAC
*
74303773 AGTGAAATTTTGTAA
1 AGTGAAATTATGTAA
74303788 TAAAACAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (16 bp):
AGTGAAATTATGTAAC
Found at i:74307561 original size:29 final size:29
Alignment explanation
Indices: 74307499--74307601 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
74307489 GTGACGAGAT
* *
74307499 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGTAATATA
*
74307528 CGGCACTAAGTGTGCGAG-TT-TAGACTATA
1 TGGCACTAAGTGTGCGAGCTTGTA-A-TATA
* * **
74307557 TGGCACTATGTGTGCGGGCTTG-AATCACG
1 TGGCACTAAGTGTGCGAGCTTGTAAT-ATA
*
74307586 TGGCACTGAGTGTGCG
1 TGGCACTAAGTGTGCG
74307602 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
27 2 0.03
28 4 0.07
29 50 0.85
30 3 0.05
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGTAATATA
Found at i:74324284 original size:20 final size:20
Alignment explanation
Indices: 74324233--74324284 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
74324223 ATTAAAATGT
74324233 AAAA-ACTAAATAAAAAACA
1 AAAATACTAAATAAAAAACA
* *
74324252 AAAATATTGAAAT-AAAAATA
1 AAAATACT-AAATAAAAAACA
74324272 AAAATGACTAAAT
1 AAAAT-ACTAAAT
74324285 TAATATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.15
20 17 0.63
21 6 0.22
ACGTcount: A:0.71, C:0.06, G:0.04, T:0.19
Consensus pattern (20 bp):
AAAATACTAAATAAAAAACA
Found at i:74330028 original size:34 final size:34
Alignment explanation
Indices: 74329976--74330059 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 34
74329966 TTTTTTAATA
74329976 TAATT-AAAT-TTCATAATTATTTTTGTACACTTT
1 TAATTCAAATATT-ATAATTATTTTTGTACACTTT
74330009 TAATTCAAATATTATAATTATTTTTGTACACTTT
1 TAATTCAAATATTATAATTATTTTTGTACACTTT
74330043 TAATTCAAATATTATAA
1 TAATTCAAATATTATAA
74330060 CATTTTTTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
33 5 0.10
34 42 0.86
35 2 0.04
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.51
Consensus pattern (34 bp):
TAATTCAAATATTATAATTATTTTTGTACACTTT
Found at i:74335512 original size:79 final size:82
Alignment explanation
Indices: 74335372--74335556 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
74335362 TCGAATGATG
* * *
74335372 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
74335436 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
74335452 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
74335514 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
74335532 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74335557 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:74335564 original size:40 final size:40
Alignment explanation
Indices: 74335373--74335564 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
74335363 CGAATGATGT
* * * * *
74335373 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
74335413 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
74335453 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
74335492 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
74335532 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
74335565 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:74341296 original size:49 final size:49
Alignment explanation
Indices: 74341240--74341454 Score: 385
Period size: 49 Copynumber: 4.4 Consensus size: 49
74341230 TACATATATG
* * *
74341240 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
74341289 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
74341338 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
74341387 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
74341436 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
74341455 TAATGTAAAA
Statistics
Matches: 162, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 162 1.00
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:74341606 original size:37 final size:37
Alignment explanation
Indices: 74341556--74341677 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
74341546 GGAATATGTT
*
74341556 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
74341593 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
74341630 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
74341667 CCGGGTAAGAC
1 CCGGGTAAGAC
74341678 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:74347474 original size:79 final size:82
Alignment explanation
Indices: 74347334--74347518 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
74347324 TCGAATGATG
* * *
74347334 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
74347398 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
74347414 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
74347476 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
74347494 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74347519 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:74347526 original size:40 final size:40
Alignment explanation
Indices: 74347335--74347526 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
74347325 CGAATGATGT
* * * * *
74347335 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
74347375 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
74347415 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
74347454 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
74347494 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
74347527 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:74347549 original size:79 final size:79
Alignment explanation
Indices: 74347334--74347551 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
74347324 TCGAATGATG
* * * * ** *
74347334 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
74347397 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
74347414 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
74347479 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
74347494 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
74347552 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:74349849 original size:33 final size:34
Alignment explanation
Indices: 74349804--74349885 Score: 89
Period size: 33 Copynumber: 2.4 Consensus size: 34
74349794 GTTACACAAT
* *
74349804 TGGGCCTAAGCCCATAT-CAGTCGCAATATCA-A
1 TGGGCCTTAGCCCATATACAGTAGCAATATCAGA
* *
74349836 TGTGGCCTTAGCCCA-ATACAGTATCAGTATCAGTA
1 TG-GGCCTTAGCCCATATACAGTAGCAATATCAG-A
74349871 TGGGCCTTAGCCCAT
1 TGGGCCTTAGCCCAT
74349886 CTCAATACAG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
32 4 0.10
33 22 0.54
34 12 0.29
35 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATACAGTAGCAATATCAGA
Found at i:74353961 original size:14 final size:16
Alignment explanation
Indices: 74353937--74353969 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
74353927 TATTTTCAAT
74353937 TTTTTTATTTAAAA-A
1 TTTTTTATTTAAAAGA
74353952 TTTTTT-TTTAAAAGA
1 TTTTTTATTTAAAAGA
74353967 TTT
1 TTT
74353970 ACTTACATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
TTTTTTATTTAAAAGA
Found at i:74354046 original size:25 final size:26
Alignment explanation
Indices: 74354004--74354056 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
74353994 TGAATATAAG
*
74354004 TAAAATTTTGAAAATTTCATATTTAAA
1 TAAAATTTTG-AAATTTCAAATTTAAA
*
74354031 TAAAATTTTG-ACTTTCAAATTTAAA
1 TAAAATTTTGAAATTTCAAATTTAAA
74354056 T
1 T
74354057 TCTTGTTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 14 0.58
27 10 0.42
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (26 bp):
TAAAATTTTGAAATTTCAAATTTAAA
Found at i:74358436 original size:42 final size:44
Alignment explanation
Indices: 74358336--74358495 Score: 179
Period size: 43 Copynumber: 3.7 Consensus size: 44
74358326 AGCTTGTACA
* * * *
74358336 ATGCCAACGTCCCAGA-CGTGGTCTTTCATGTAATCAAATATCG
1 ATGCCAATGTCCCAGATAGTGGTCTTACATGAAATCAAATATCG
* *
74358379 ATGCCACTGTCCCAGATAG-GGTCTTACATGAAATCATATA-CG
1 ATGCCAATGTCCCAGATAGTGGTCTTACATGAAATCAAATATCG
* *
74358421 ATGCCAATGTCCCAGACA-TGGTCTTACACGTAAATCACAA-ATCG
1 ATGCCAATGTCCCAGATAGTGGTCTTACATG-AAATCA-AATATCG
*
74358465 ATGCCAATGTCCCAAAT-GTGGTCTTACATGA
1 ATGCCAATGTCCCAGATAGTGGTCTTACATGA
74358496 TAACACATAT
Statistics
Matches: 98, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
42 28 0.29
43 40 0.41
44 30 0.31
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCCAGATAGTGGTCTTACATGAAATCAAATATCG
Found at i:74358488 original size:86 final size:85
Alignment explanation
Indices: 74358336--74358495 Score: 225
Period size: 86 Copynumber: 1.9 Consensus size: 85
74358326 AGCTTGTACA
* * * * *
74358336 ATGCCAACGTCCCAGACGTGGTCTTTCATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAAATAGGGT
74358401 CTTACATGAAATCATATACG
66 CTTACATGAAATCATATACG
*
74358421 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCGATGCCAATGTCCCAAAT-GT
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCCAATGTCCCAAATAG-
74358484 GGTCTTACATGA
63 GGTCTTACATGA
74358496 TAACACATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 28 0.42
86 36 0.55
87 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAAATAGGGT
CTTACATGAAATCATATACG
Found at i:74364845 original size:50 final size:50
Alignment explanation
Indices: 74364741--74365017 Score: 270
Period size: 50 Copynumber: 5.5 Consensus size: 50
74364731 TAGTACGCAG
* * * * * * *
74364741 AGTAGCCAGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACAT
* * *
74364790 AGTAGCCTGCACTTAGTACCATACACGTGACCTAACCATCTGATACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACAT
* *** * * *
74364840 AGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATCTGATACACAT
* * * * *
74364891 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGCTACACCT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACAT
* *
74364941 AGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACAT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACAT
* *
74364993 AGTAGCCTGCACATAGTTCTACACA
1 AGTAGCCTGCACTTAGTACTACACA
74365018 TGTGTTCTTA
Statistics
Matches: 186, Mismatches: 36, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
49 28 0.15
50 84 0.45
51 38 0.20
52 36 0.19
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (50 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACAT
Found at i:74364855 original size:99 final size:101
Alignment explanation
Indices: 74364741--74364967 Score: 278
Period size: 101 Copynumber: 2.3 Consensus size: 101
74364731 TAGTACGCAG
* * *
74364741 AGTAGCCAGCACTTAGTACTACACATGCGA-CCAA-CAATCCGGTACACGTAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGCGATCCAAGCAATCCGGTACACATAGTAGCCTGCACTT
* * *
74364804 AGTACCATACACGTGACCTAACCATCTGATACACGT
66 AGTACCACACACGCGACCTAACCATCTGATACACCT
* ** *** * *
74364840 AGTAGCCTGCACTTAGTACTACACACGTGATTGAAGTTGTCGGGTACGCATAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGCGATCCAAGCAATCCGGTACACATAGTAGCCTGCACTT
* * * *
74364905 AGTACTACACATGCGACCTAACTATCTGCTACACCT
66 AGTACCACACACGCGACCTAACCATCTGATACACCT
74364941 AGTAGCCTGCACTTAGTACTACACACG
1 AGTAGCCTGCACTTAGTACTACACACG
74364968 TGACCTAAAA
Statistics
Matches: 108, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 27 0.25
100 2 0.02
101 79 0.73
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (101 bp):
AGTAGCCTGCACTTAGTACTACACACGCGATCCAAGCAATCCGGTACACATAGTAGCCTGCACTT
AGTACCACACACGCGACCTAACCATCTGATACACCT
Found at i:74364923 original size:101 final size:101
Alignment explanation
Indices: 74364789--74364970 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
74364779 CCGGTACACG
* * *
74364789 TAGTAGCCTGCACTTAGTACCATACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACCACACACGCGACCTAACCATCTGATACACCTAGTAGCCTGCACTT
74364854 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
* * * *
74364890 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGCTACACCTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACCACACACGCGACCTAACCATCTGATACACCTAGTAGCCTGCACTT
74364955 AGTACTACACACGTGA
66 AGTACTACACACGTGA
74364971 CCTAAAACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACCACACACGCGACCTAACCATCTGATACACCTAGTAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
Found at i:74367751 original size:15 final size:14
Alignment explanation
Indices: 74367728--74367772 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
74367718 AGAAAGCTAG
74367728 AATATAGAAATCCAA
1 AATA-AGAAATCCAA
*
74367743 CATAAAGAAATCCAA
1 AAT-AAGAAATCCAA
74367758 AATAAGAAAATCCAA
1 AATAAG-AAATCCAA
74367773 TCAGACTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 3 0.12
15 22 0.85
16 1 0.04
ACGTcount: A:0.62, C:0.16, G:0.07, T:0.16
Consensus pattern (14 bp):
AATAAGAAATCCAA
Found at i:74373757 original size:42 final size:42
Alignment explanation
Indices: 74373675--74373771 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
74373665 TAAGATTCCG
* * * *
74373675 TATAAGACCATATCTGGGATATGACCTCGGTATGTGATTTCA
1 TATAAGACCATATCAGGGACATGACATCGATATGTGATTTCA
* *
74373717 TATAAGACCATGTCAGGGACATGGCATCGATATGAT-ATTTCA
1 TATAAGACCATATCAGGGACATGACATCGATATG-TGATTTCA
* *
74373759 TGTAAGACTATAT
1 TATAAGACCATAT
74373772 TGGGGATATG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (42 bp):
TATAAGACCATATCAGGGACATGACATCGATATGTGATTTCA
Found at i:74376588 original size:25 final size:25
Alignment explanation
Indices: 74376541--74376588 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
74376531 TTATAACATG
* * * *
74376541 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74376566 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74376589 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74376936 original size:25 final size:24
Alignment explanation
Indices: 74376721--74376922 Score: 332
Period size: 24 Copynumber: 8.4 Consensus size: 24
74376711 GAGGAAGTGC
* *
74376721 AAAAGGGCTTATGCTCCAGTGATT
1 AAAAGGGCTTATGCCCCAGTTATT
74376745 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
74376769 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
74376793 GAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
74376817 AAAAGGGCTTATACCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74376841 GAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
74376865 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74376889 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
74376913 AAAAGAGGCT
1 AAAAG-GGCT
74376923 AGGCCTTCAG
Statistics
Matches: 166, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 162 0.98
25 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74396140 original size:43 final size:43
Alignment explanation
Indices: 74396012--74396141 Score: 165
Period size: 43 Copynumber: 3.0 Consensus size: 43
74396002 TAGGATTATC
* *
74396012 GATATGTGATTACATATAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATT
** * * *
74396055 GATATGTGATTATGTGTATGACC-CTATCTGGGAAAG-TGGCATT
1 GATATGTGATTACATGTAAGACCAC-GTCTGGG-ACGTTGGCATT
74396098 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATT
1 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATT
74396141 G
1 G
74396142 TACAATATGT
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
42 3 0.04
43 65 0.92
44 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATT
Found at i:74399323 original size:31 final size:31
Alignment explanation
Indices: 74399280--74399382 Score: 170
Period size: 31 Copynumber: 3.3 Consensus size: 31
74399270 GTTACTAGGT
* * *
74399280 CGAAACCTTTTCATAAATTATATCACTGGGA
1 CGAAGCCTTTTCATAAATCATATCACTGGGC
74399311 CGAAGCCTTTTCATAAATCATATCACTGGGC
1 CGAAGCCTTTTCATAAATCATATCACTGGGC
*
74399342 CGAAGCCTTTTCATAAATCATATCACTAGGC
1 CGAAGCCTTTTCATAAATCATATCACTGGGC
74399373 CGAAGCCTTT
1 CGAAGCCTTT
74399383 ACTGTAAACG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (31 bp):
CGAAGCCTTTTCATAAATCATATCACTGGGC
Found at i:74399453 original size:42 final size:42
Alignment explanation
Indices: 74399406--74399497 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
74399396 TGGCCCTTAG
74399406 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
74399448 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
74399490 GCCTATTT
1 GCCCATTT
74399498 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:74400527 original size:27 final size:27
Alignment explanation
Indices: 74400497--74400561 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
74400487 GGGCATATTC
*
74400497 GTCATTTTACTATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
74400524 GTCACTTTACCCTACACGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
74400551 GTCTTTTTACC
1 GTCATTTTACC
74400562 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:74400645 original size:27 final size:26
Alignment explanation
Indices: 74400615--74400670 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
74400605 GTAAATCTAC
74400615 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTT-T
*
74400642 AAACCAATGGTATTTCTATAATTTTT
1 AAACCAAGGGTATTTCTATAATTTTT
74400668 AAA
1 AAA
74400671 AAGTCAAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
AAACCAAGGGTATTTCTATAATTTTT
Found at i:74400715 original size:27 final size:27
Alignment explanation
Indices: 74400683--74400772 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
74400673 GTCAAGGGTA
* * * *
74400683 TTGGTAATTTCATAAACCAGTGGTATT
1 TTGGTAATTTTACAAACTAGGGGTATT
*
74400710 TCGGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACTAGGGGTATT
74400737 TTGGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACTAGGGGTATT
74400764 TTGGTAATT
1 TTGGTAATT
74400773 CTATCCTTAG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
TTGGTAATTTTACAAACTAGGGGTATT
Found at i:74400741 original size:54 final size:54
Alignment explanation
Indices: 74400612--74400772 Score: 155
Period size: 54 Copynumber: 3.0 Consensus size: 54
74400602 TTGGTAAATC
* ** * * **
74400612 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTT
1 TACAAACTAAGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAA-TTT
* * *
74400667 TAAAAAGTCAAGGGTA--TTGGTAATTTCATAAACCAGTGGTATTTCGGTAATTT
1 TACAAACT-AAGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAATTT
* * * * *
74400720 TACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 TACAAACTAAGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAATT
74400773 CTATCCTTAG
Statistics
Matches: 85, Mismatches: 18, Indels: 7
0.77 0.16 0.06
Matches are distributed among these distances:
52 6 0.07
53 9 0.11
54 58 0.68
55 5 0.06
56 7 0.08
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
TACAAACTAAGGGTATTTTGGTAATTTTATAAACCAGTGGTATTTCGGTAATTT
Found at i:74400840 original size:27 final size:27
Alignment explanation
Indices: 74400804--74401001 Score: 261
Period size: 27 Copynumber: 7.3 Consensus size: 27
74400794 GTAATTTCAC
74400804 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* **
74400831 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74400858 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74400885 AATCAAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74400912 AATAGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
74400939 AATCGGGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
74400966 AATTGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
74400993 AATTGAGGG
1 AATCGAGGG
74401002 CATTTCAGTA
Statistics
Matches: 148, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:74400921 original size:81 final size:81
Alignment explanation
Indices: 74400804--74401001 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
74400794 GTAATTTCAC
74400804 AATCGAGGGTAAAACGGTAATTCTATAAATCA-AGGGTAAAATAGTAATTCTATAAATCGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTATAAAT-AGAGGGTAAAATAGTAATTCTATAAATCGAGGGT
*
74400868 AAAATGGTAATTCTGTA
65 AAAACGGTAATTCTGTA
* * * *
74400885 AATCAAGGGTAAAACGATAATTCTATAAATAGAGGGTAAAATGGTAATTCTATAAATCGGGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATAGAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
74400950 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* * * *
74400966 AATTGAGGGTAAAACGGTAATTTTACAAATTGAGGG
1 AATCGAGGGTAAAACGGTAATTCTATAAATAGAGGG
74401002 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 1 0.01
81 104 0.99
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATAGAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:74402750 original size:34 final size:34
Alignment explanation
Indices: 74402712--74402800 Score: 128
Period size: 34 Copynumber: 2.6 Consensus size: 34
74402702 TTGAACGGTC
*
74402712 TGGGCCTAAGCCCATATCAGTCG-CAATATCAGTG
1 TGGGCCTTAGCCCATATCAGT-GACAATATCAGTG
74402746 TGGGCCTTAGCCCA-ATACAGTGACAATATCAGTG
1 TGGGCCTTAGCCCATAT-CAGTGACAATATCAGTG
*
74402780 TGGGCCTTAGCCCATTTCAGT
1 TGGGCCTTAGCCCATATCAGT
74402801 ATAGTATCCA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
33 3 0.06
34 46 0.92
35 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAGTGACAATATCAGTG
Found at i:74404040 original size:6 final size:6
Alignment explanation
Indices: 74404010--74404109 Score: 80
Period size: 6 Copynumber: 16.3 Consensus size: 6
74404000 AAGAATCATT
* * *
74404010 ATCAGA A-CTAGA ATCAAA ATAAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
74404059 ATCAGA ATCAGA ATTAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
74404108 AT
1 AT
74404110 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
5 3 0.04
6 63 0.85
7 6 0.08
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:74404060 original size:19 final size:19
Alignment explanation
Indices: 74404036--74404106 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
74404026 AAATAAGAAT
74404036 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
*
74404055 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTGA
* *
74404072 TTAGAATCAGAATTAGGTGA
1 -CAGAATCAGAATCAGGTGA
74404092 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
74404107 AATGTGAATG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.02
18 13 0.30
19 28 0.65
20 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:74404072 original size:37 final size:37
Alignment explanation
Indices: 74404019--74404109 Score: 146
Period size: 37 Copynumber: 2.5 Consensus size: 37
74404009 TATCAGAACT
* *
74404019 AGAATCAAAATAAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
* *
74404056 AGAATCAGAATCAGAATTAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
74404093 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
74404110 GTGAATGCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:74404264 original size:27 final size:26
Alignment explanation
Indices: 74404227--74404307 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
74404217 AGCATCGCTG
* *
74404227 CCAGAACAGATGTTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
74404253 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
74404280 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
74404307 C
1 C
74404308 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.12
27 42 0.88
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:74404419 original size:22 final size:22
Alignment explanation
Indices: 74404394--74404456 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
74404384 CCACAATAAC
*
74404394 GGTACACAGCCATAATCAGGTT
1 GGTACAAAGCCATAATCAGGTT
74404416 GGTACAAAGCCATATAT-AGGTT
1 GGTACAAAGCCATA-ATCAGGTT
**
74404438 GGCGCAAAGCCATAATCAG
1 GGTACAAAGCCATAATCAG
74404457 AATAATTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (22 bp):
GGTACAAAGCCATAATCAGGTT
Found at i:74405000 original size:27 final size:27
Alignment explanation
Indices: 74404970--74405185 Score: 279
Period size: 27 Copynumber: 8.0 Consensus size: 27
74404960 CGGGCAAAAT
* * *
74404970 GGTAATTTTACCATACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74404997 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74405024 TGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
74405051 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74405078 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
74405105 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
74405132 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
74405159 AGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
74405186 AATAATTTTG
Statistics
Matches: 164, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:74405087 original size:81 final size:81
Alignment explanation
Indices: 74404970--74405185 Score: 324
Period size: 81 Copynumber: 2.7 Consensus size: 81
74404960 CGGGCAAAAT
* * * * *
74404970 GGTAATTTTACCATACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCTGTATTTCTAC
1 GGTAATTCTACCATACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
74405035 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * *
74405051 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCATACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
74405116 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * *
74405132 GATAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCATACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
74405186 AATAATTTTG
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 121 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCATACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
CCTACAAGGGTATTTC
Found at i:74405207 original size:27 final size:27
Alignment explanation
Indices: 74405177--74405280 Score: 93
Period size: 27 Copynumber: 3.9 Consensus size: 27
74405167 TACCCTATAG
* *
74405177 GGGTATTTCAATAATTTTGTAAATCAA
1 GGGTATTTCAGTAATTTTGTAAATCGA
*** *
74405204 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
* ** *
74405231 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTGTAAATCGA
*
74405258 GGGTATTTCAGTAATTTGGTAAA
1 GGGTATTTCAGTAATTTTGTAAA
74405281 CTAAAGTATT
Statistics
Matches: 56, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGTAAATCGA
Found at i:74431048 original size:55 final size:53
Alignment explanation
Indices: 74430923--74431119 Score: 207
Period size: 55 Copynumber: 3.7 Consensus size: 53
74430913 TTGGTAAGAT
* * * * **
74430923 AAGGATATCATGCAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGC
* ** *
74430977 AAGGAAATAATGTAAGACCATGTCAAGACATGGTATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * * *
74431032 AAAGG-TCCCATGTAAGACCATGTAAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGC
* *
74431085 AAGGATACCACGTAAGACTATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
74431120 ATGGTAAGTT
Statistics
Matches: 119, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 38 0.32
55 41 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGC
Found at i:74431131 original size:53 final size:54
Alignment explanation
Indices: 74430923--74431130 Score: 213
Period size: 53 Copynumber: 3.9 Consensus size: 54
74430913 TTGGTAAGAT
* * * * *
74430923 AAGGATATCATGCAAGACCATGCCAAGGCATGGCATTGAAAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
* ** * *
74430977 AAGGAAATAATGTAAGACCATGTCAAGACATGGTATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * *
74431032 AAAGG-TCCCATGTAAGACCATGTAAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
74431085 AAGGATACCACGTAAGACTATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC
74431131 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 23, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 38 0.30
55 41 0.32
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:74434877 original size:40 final size:40
Alignment explanation
Indices: 74434765--74434917 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
74434755 GGATATAGCG
* * * *
74434765 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTAT--AA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGAA
* * *
74434803 TAGCTCGCACAAATGCCTTCGGGACATAACCCGGATTTGGAA
1 -A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGAA
* **
74434845 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGAA
*
74434885 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
74434918 CATCATTCGA
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
39 4 0.04
40 77 0.81
41 12 0.13
42 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGAA
Found at i:74437028 original size:26 final size:26
Alignment explanation
Indices: 74436999--74437059 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
74436989 GTCATGATTG
*
74436999 GTAAGCTCCTCTTAAGCTAATGAACA
1 GTAAGCTCCTCCTAAGCTAATGAACA
*
74437025 GTAAGCTCCTCCTGAGCTAATGAACA
1 GTAAGCTCCTCCTAAGCTAATGAACA
*
74437051 GGAAGCTCC
1 GTAAGCTCC
74437060 ATTAAGTTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (26 bp):
GTAAGCTCCTCCTAAGCTAATGAACA
Found at i:74437093 original size:23 final size:24
Alignment explanation
Indices: 74437067--74437139 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 24
74437057 TCCATTAAGT
*
74437067 TGAAACGATAAGCTTTAT-CGAGC
1 TGAAACGATAAGCTTCATACGAGC
*
74437090 TG-AAC-AGCAAGC-TCATACGAGC
1 TGAAACGA-TAAGCTTCATACGAGC
* *
74437112 TGAAACGATAAGCTCCA-ATGAGC
1 TGAAACGATAAGCTTCATACGAGC
74437135 TGAAA
1 TGAAA
74437140 ATAGTAAGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
21 4 0.10
22 14 0.35
23 19 0.47
24 3 0.08
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (24 bp):
TGAAACGATAAGCTTCATACGAGC
Found at i:74437156 original size:24 final size:23
Alignment explanation
Indices: 74437067--74437157 Score: 62
Period size: 23 Copynumber: 4.0 Consensus size: 23
74437057 TCCATTAAGT
* *
74437067 TGAAACGATAAGCT-TTATCGAGC
1 TGAAAAGATAAGCTCATAT-GAGC
* * *
74437090 TGAACAG-CAAGCTCATACGAGC
1 TGAAAAGATAAGCTCATATGAGC
*
74437112 TGAAACGATAAGCTCCA-ATGAGC
1 TGAAAAGATAAGCT-CATATGAGC
* *
74437135 TGAAAATAGTAAGCTCTTATGAG
1 TGAAAAGA-TAAGCTCATATGAG
74437158 TTGATATATT
Statistics
Matches: 51, Mismatches: 12, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
22 14 0.27
23 24 0.47
24 13 0.25
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (23 bp):
TGAAAAGATAAGCTCATATGAGC
Found at i:74439661 original size:42 final size:42
Alignment explanation
Indices: 74439543--74439663 Score: 111
Period size: 42 Copynumber: 2.9 Consensus size: 42
74439533 TACCATTCCA
* * * ** *
74439543 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCG
1 ATGCCAAATCCCAGACATGGTCTTACACGAAATCTCATACCG
* * *
74439585 ATG-CAATAGCCCAG-CTATGGTCATACACAAAATCTCATACCG
1 ATGCCAA-ATCCCAGAC-ATGGTCTTACACGAAATCTCATACCG
* *
74439627 ATGCCAAATCCCAGACATAGTCTTACACGTAATCTCA
1 ATGCCAAATCCCAGACATGGTCTTACACGAAATCTCA
74439664 ACTAACCCTA
Statistics
Matches: 61, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.03
42 55 0.90
43 4 0.07
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
ATGCCAAATCCCAGACATGGTCTTACACGAAATCTCATACCG
Found at i:74441883 original size:42 final size:42
Alignment explanation
Indices: 74441762--74441925 Score: 202
Period size: 42 Copynumber: 3.9 Consensus size: 42
74441752 TACCGTACCA
* * *
74441762 ATGCCATATCTCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* * * * * *
74441804 ATGCTAATAGCACAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *
74441847 ATGCCATATCCCAAATATGGTCTTACATGAAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* *
74441889 ATGCCATATCCCAGATATAGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA
74441926 GTAACCCTAA
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 68 0.67
43 34 0.33
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:74443821 original size:13 final size:14
Alignment explanation
Indices: 74443745--74443821 Score: 67
Period size: 13 Copynumber: 5.7 Consensus size: 14
74443735 TATAACTTGG
*
74443745 TATATG-AATCGAT
1 TATATGAAATAGAT
74443758 TATATGGAAATAGAT
1 TATAT-GAAATAGAT
74443773 T-TAT-AGAATA-AT
1 TATATGA-AATAGAT
*
74443785 TATATG-AATCGAT
1 TATATGAAATAGAT
74443798 TATATGAAAATAG-T
1 TATATG-AAATAGAT
74443812 TATATGAAAT
1 TATATGAAAT
74443822 GTTTATACAA
Statistics
Matches: 53, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
12 7 0.13
13 24 0.45
14 11 0.21
15 11 0.21
ACGTcount: A:0.45, C:0.03, G:0.14, T:0.38
Consensus pattern (14 bp):
TATATGAAATAGAT
Found at i:74446350 original size:40 final size:40
Alignment explanation
Indices: 74446291--74446432 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
74446281 AAATTGAATG
* * *
74446291 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
74446331 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
74446371 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
74446411 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
74446433 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:74446456 original size:40 final size:39
Alignment explanation
Indices: 74446329--74446458 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
74446319 ATGCTGGAAA
* * *
74446329 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
74446370 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
74446408 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
74446449 TTATATCCGG
1 TTATATCCGG
74446459 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:74454374 original size:40 final size:40
Alignment explanation
Indices: 74454308--74454458 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74454298 AAATTGAATG
* * *
74454308 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74454347 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
74454387 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
74454427 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
74454459 ACATGCTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74454472 original size:40 final size:39
Alignment explanation
Indices: 74454345--74454474 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
74454335 ATGCTGGAAA
* * *
74454345 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
74454386 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
74454424 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
74454465 TTATATCCGG
1 TTATATCCGG
74454475 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:74461233 original size:40 final size:40
Alignment explanation
Indices: 74461167--74461317 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
74461157 AAATTGAATG
* * *
74461167 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74461206 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
74461246 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
74461286 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
74461318 ACATGTTATA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74468591 original size:40 final size:40
Alignment explanation
Indices: 74468525--74468691 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74468515 AAATTGAATG
* * *
74468525 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74468564 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
74468604 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74468644 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74468684 ATATCCGG
1 ATATCCGG
74468692 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74476596 original size:40 final size:40
Alignment explanation
Indices: 74476530--74476696 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
74476520 AAATTGAATG
* * *
74476530 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
74476569 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
74476609 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
74476649 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
74476689 ATATCCGG
1 ATATCCGG
74476697 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:74482155 original size:40 final size:40
Alignment explanation
Indices: 74482110--74482277 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
74482100 CGGAATACAA
* *
74482110 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACATGCACGAATGCCTTCGGGTATTAGC
* * *
74482150 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACATGCACGAATGCCTTCGGGTATTAGC
* * *
74482190 TCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACATGCACGAATGCCTTCGGGTATTAGC
* * *
74482230 CCGGATA-AAGTCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCACAT-GCACGAA-TGCCTTCGGGTATTAGC
74482270 CCGGATAT
1 CCGGATAT
74482278 CATTCAATTG
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 5 0.05
40 106 0.95
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACATGCACGAATGCCTTCGGGTATTAGC
Found at i:74482250 original size:80 final size:80
Alignment explanation
Indices: 74482110--74482277 Score: 223
Period size: 80 Copynumber: 2.1 Consensus size: 80
74482100 CGGAATACAA
* * *
74482110 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTTGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
74482175 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* ** *
74482190 TCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
74482253 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
74482270 CCGGATAT
1 CCGGATAT
74482278 CATTCAATTG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 73 0.96
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:74488671 original size:40 final size:40
Alignment explanation
Indices: 74488612--74488819 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
74488602 CAATTGAATG
* * * *
74488612 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
74488652 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
74488692 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
74488732 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
74488772 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
74488812 ATATCCGG
1 ATATCCGG
74488820 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:74488750 original size:80 final size:80
Alignment explanation
Indices: 74488614--74488819 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
74488604 ATTGAATGAT
* * ** * * *
74488614 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
74488678 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
74488694 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
74488759 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
74488774 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
74488820 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:74496721 original size:40 final size:40
Alignment explanation
Indices: 74496662--74496869 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
74496652 CAATTGAATG
* * * *
74496662 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
74496702 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
74496742 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
74496782 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
74496822 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
74496862 ATATCCGG
1 ATATCCGG
74496870 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:74496800 original size:80 final size:80
Alignment explanation
Indices: 74496664--74496869 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
74496654 ATTGAATGAT
* * ** * * *
74496664 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
74496728 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
74496744 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
74496809 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
74496824 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
74496870 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:74501260 original size:30 final size:30
Alignment explanation
Indices: 74501214--74501273 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
74501204 TTCCCGAGCC
74501214 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
74501244 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
74501274 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:74504089 original size:24 final size:26
Alignment explanation
Indices: 74503991--74504089 Score: 62
Period size: 29 Copynumber: 3.7 Consensus size: 26
74503981 TAAAACCTAA
* *
74503991 AAATGAAATAGTA-TTAAAGGA-AAAT
1 AAAT-AAAAAGTATTTAAAAGATAAAT
74504016 AAAATAAAAAGTACTTTAAGAAGATAAAT
1 -AAATAAAAAGTA-TTTAA-AAGATAAAT
* **
74504045 AAAGATAAAAGTGAAAATAAAA-AT-AAT
1 AAATA-AAAAGT--ATTTAAAAGATAAAT
74504072 AAATAAAAAGTATTTAAA
1 AAATAAAAAGTATTTAAA
74504090 CATTGTCATC
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
24 5 0.09
25 7 0.12
26 10 0.17
27 11 0.19
28 9 0.16
29 12 0.21
30 3 0.05
31 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.11, T:0.23
Consensus pattern (26 bp):
AAATAAAAAGTATTTAAAAGATAAAT
Found at i:74507153 original size:22 final size:22
Alignment explanation
Indices: 74507127--74507192 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
74507117 ATTGATTCTT
74507127 AAGTGCTATTTCGGTATTCTGA
1 AAGTGCTATTTCGGTATTCTGA
** *
74507149 AAGTG-GGTTT--G-ATTCT-T
1 AAGTGCTATTTCGGTATTCTGA
74507166 AAGTGCTATTTCGGTATTCTGA
1 AAGTGCTATTTCGGTATTCTGA
74507188 AAGTG
1 AAGTG
74507193 AGTTTTTGAC
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 5 0.15
18 8 0.24
19 1 0.03
20 1 0.03
21 8 0.24
22 10 0.30
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.41
Consensus pattern (22 bp):
AAGTGCTATTTCGGTATTCTGA
Found at i:74507172 original size:39 final size:39
Alignment explanation
Indices: 74507118--74507197 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
74507108 TCGACGCTTA
*
74507118 TTGATTCTTAAGTGCTATTTCGGTATTCTGAAAGTGGGT
1 TTGATTCTTAAGTGCTATTTCGGTATTCTGAAAGTGAGT
74507157 TTGATTCTTAAGTGCTATTTCGGTATTCTGAAAGTGAGT
1 TTGATTCTTAAGTGCTATTTCGGTATTCTGAAAGTGAGT
74507196 TT
1 TT
74507198 TTGACACCGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.21, C:0.10, G:0.24, T:0.45
Consensus pattern (39 bp):
TTGATTCTTAAGTGCTATTTCGGTATTCTGAAAGTGAGT
Found at i:74516191 original size:25 final size:25
Alignment explanation
Indices: 74516163--74516244 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
74516153 GATTTCCTTC
74516163 CCTTATAGAACTTATCAATGCCATG
1 CCTTATAGAACTTATCAATGCCATG
** * *
74516188 CCTTGGCAT-GGTCTTA-CATGATTCCTTG
1 CCTT---ATAGAACTTATCA--ATGCCATG
*
74516216 CTTTATAGAACTTATCAATGCCATG
1 CCTTATAGAACTTATCAATGCCATG
74516241 CCTT
1 CCTT
74516245 GGCATGGTCT
Statistics
Matches: 40, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
25 15 0.38
26 7 0.17
27 7 0.17
28 11 0.28
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (25 bp):
CCTTATAGAACTTATCAATGCCATG
Found at i:74516222 original size:108 final size:107
Alignment explanation
Indices: 74516019--74516268 Score: 340
Period size: 108 Copynumber: 2.3 Consensus size: 107
74516009 AACTTACCGT
* * *
74516019 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTCCCTTATAAACTCACCAATGCCATGCCTTG
* * *
74516084 GCATGGTCTTACATGGGACCTTTGCCTTATATTAACTTTTCAA
66 GCATGGTCTTACATGAGACCTTTGCCTTATA-GAACTTATCAA
* * * *
74516127 TTCCATGTCTTGACATGGTCTTACATGATTTCCTTCCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTCCCTTATA-AACTCACCAATGCCATGCCTT
** *
74516192 GGCATGGTCTTACATGATTCC-TTGCTTTATAGAACTTATCAA
65 GGCATGGTCTTACATGAGACCTTTGCCTTATAGAACTTATCAA
* *
74516234 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTT
74516269 ATCTTACCAG
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
107 40 0.32
108 47 0.38
109 37 0.30
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (107 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCCTTCCCTTATAAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGAGACCTTTGCCTTATAGAACTTATCAA
Found at i:74516261 original size:53 final size:53
Alignment explanation
Indices: 74516019--74516268 Score: 304
Period size: 53 Copynumber: 4.6 Consensus size: 53
74516009 AACTTACCGT
* * * * * *
74516019 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATA-AACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGAT-TCCTTGCCTTATAGAACTTATCAA
*** * *
74516072 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATATTAACTTTTCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATTCC-TTGCCTTATA-GAACTTATCAA
* * * *
74516127 TTCCATGTCTTGACATGGTCTTACATGATTTCCTTCCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGA-TTCCTTGCCTTATAGAACTTATCAA
*
74516181 TGCCATGCCTTGGCATGGTCTTACATGATTCCTTGCTTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATTCCTTGCCTTATAGAACTTATCAA
74516234 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGAT-TCCTT
74516269 ATCTTACCAG
Statistics
Matches: 170, Mismatches: 22, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.01
53 87 0.51
54 39 0.23
55 40 0.24
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (53 bp):
TGCCATGCCTTGGCATGGTCTTACATGATTCCTTGCCTTATAGAACTTATCAA
Found at i:74516395 original size:47 final size:47
Alignment explanation
Indices: 74516231--74516456 Score: 189
Period size: 47 Copynumber: 4.8 Consensus size: 47
74516221 TAGAACTTAT
* * * *
74516231 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTA-TCT--TAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTAGT-TAATGC
*** * *
74516276 CAGATGCCATGTTCCAAACATGGTCTTACATGGTATCCTTATCTTAGTGC
1 CA-ATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTA-GTTAATGC
** * **
74516326 CAATGCCACATCTTCATGTGGTCTTACATGG-AGTCCTTAGTTAATGC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTTAGTTAATGC
* *
74516373 CAATGCCATGTCTTGACATGGTCTTACACGGGATCCTT-GCCTT-A--C
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTAG--TTAATGC
74516418 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTA
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTA
74516457 ACCGTCAATT
Statistics
Matches: 146, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
45 39 0.27
46 9 0.06
47 61 0.42
48 26 0.18
49 7 0.05
50 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (47 bp):
CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTAGTTAATGC
Found at i:74519230 original size:29 final size:29
Alignment explanation
Indices: 74519189--74519248 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
74519179 ATGAATCGGT
*
74519189 TATATGGAAATAGACT-TATGAAATGATTA
1 TATATAGAAATAG-CTATATGAAATGATTA
* *
74519218 TATATAGAAATAGTTATATGAAATGTTTA
1 TATATAGAAATAGCTATATGAAATGATTA
74519247 TA
1 TA
74519249 CGAAATGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 1 0.04
29 26 0.96
ACGTcount: A:0.45, C:0.02, G:0.15, T:0.38
Consensus pattern (29 bp):
TATATAGAAATAGCTATATGAAATGATTA
Found at i:74519247 original size:13 final size:13
Alignment explanation
Indices: 74519205--74519263 Score: 57
Period size: 13 Copynumber: 4.3 Consensus size: 13
74519195 GAAATAGACT
74519205 TATGAAATGATTATA
1 TATGAAATG-TT-TA
74519220 TATAGAAATAG-TTA
1 TAT-GAAAT-GTTTA
74519234 TATGAAATGTTTA
1 TATGAAATGTTTA
* *
74519247 TACGAAATGTTTT
1 TATGAAATGTTTA
74519260 TATG
1 TATG
74519264 GATATAGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
12 1 0.03
13 22 0.58
14 5 0.13
15 4 0.11
16 5 0.13
17 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.42
Consensus pattern (13 bp):
TATGAAATGTTTA
Found at i:74521434 original size:21 final size:20
Alignment explanation
Indices: 74521387--74521435 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
74521377 GCAAGTAGTC
*
74521387 TTGAGTTTTGAAAACAGAATA
1 TTGAG-TTTGAAAACACAATA
* *
74521408 TCGAGTTTGAAAACACTATCA
1 TTGAGTTTGAAAACACAAT-A
74521429 TTGAGTT
1 TTGAGTT
74521436 GGATTAACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (20 bp):
TTGAGTTTGAAAACACAATA
Found at i:74524598 original size:48 final size:48
Alignment explanation
Indices: 74524541--74524813 Score: 213
Period size: 48 Copynumber: 5.7 Consensus size: 48
74524531 GTGAATTGCC
* *
74524541 GATGCCATGTTCCAAACATCGTCTTACACT-GCCTCACAAGTCGAGGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCCTCACAA-TCGAGGCT
* * ** * *
74524589 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TGTTGTGGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTAGC-CTCACAATCGAGGCT
* * * *
74524637 GATGCCATGTCCCAGACATGGTCTTACACTAG-CACACATATCAATGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCCTCACA-ATCGAGGCT
* * *
74524685 GATGCCATG-TCCTTGACATGGTCTTACACTGGCTCTCACAACATC-A--CC
1 GATGCCATGTTCC-AGACATGGTCTTACACTAGC-CTCAC-A-ATCGAGGCT
* * * * *
74524733 AATGCCATGTTCCAAACGTGGTCTTACACTAGCTCTCA-AATCGTGGCC
1 GATGCCATGTTCCAGACATGGTCTTACACTAGC-CTCACAATCGAGGCT
*
74524781 GACGCCATG-TCCTAGACATGGTCTTACACTAGC
1 GATGCCATGTTCC-AGACATGGTCTTACACTAGC
74524814 ACACGTATCA
Statistics
Matches: 181, Mismatches: 31, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
45 3 0.02
46 4 0.02
47 5 0.03
48 151 0.83
49 5 0.03
50 9 0.05
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTTCCAGACATGGTCTTACACTAGCCTCACAATCGAGGCT
Found at i:74524738 original size:96 final size:94
Alignment explanation
Indices: 74524542--74524810 Score: 279
Period size: 96 Copynumber: 2.8 Consensus size: 94
74524532 TGAATTGCCG
* * *
74524542 ATGCCATGTTCCAAACATCGTCTTACACT-GCCTCACAAGTCGAGGCTGATGCCATGTCCCAGAC
1 ATGCCATGTTCCAAACATGGTCTTACACTAG-CTCACAA-TC-ATGCTGATGCCATGTCCTAGAC
***** ** **
74524606 ATGGTCTTACACTGGCTCTCATGTTGTGGCTG
63 ATGGTCTTACACTGGCTCTCACAACATCACCA
* * * *
74524638 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGCTGATGCCATGTCCTTGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACA-ATC-ATGCTGATGCCATGTCCTAGACA
74524703 TGGTCTTACACTGGCTCTCACAACATCACCA
64 TGGTCTTACACTGGCTCTCACAACATCACCA
* * * * *
74524734 ATGCCATGTTCCAAACGTGGTCTTACACTAGCTCTCAAATCGTGGCCGACGCCATGTCCTAGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCAC-AATCAT-GCTGATGCCATGTCCTAGACA
74524799 TGGTCTTACACT
64 TGGTCTTACACT
74524811 AGCACACGTA
Statistics
Matches: 143, Mismatches: 26, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
95 1 0.01
96 139 0.97
97 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACAATCATGCTGATGCCATGTCCTAGACATG
GTCTTACACTGGCTCTCACAACATCACCA
Found at i:74531220 original size:46 final size:46
Alignment explanation
Indices: 74531167--74531342 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
74531157 TATTTGGGCA
*
74531167 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* * * *
74531213 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C-AAGCG
*
74531260 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
* *
74531306 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74531343 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 32 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGCG
Found at i:74531322 original size:93 final size:93
Alignment explanation
Indices: 74531163--74531334 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
74531153 GGGATATTTG
* * *
74531163 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
74531228 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
74531256 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
74531321 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74531335 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74539328 original size:47 final size:47
Alignment explanation
Indices: 74539274--74539553 Score: 434
Period size: 47 Copynumber: 6.0 Consensus size: 47
74539264 TTAGGATTTT
** * *
74539274 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74539321 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74539368 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74539415 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74539462 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
74539509 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
74539554 TAGTGTGAAA
Statistics
Matches: 213, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 213 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:74539374 original size:22 final size:22
Alignment explanation
Indices: 74539303--74539374 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74539293 GTATATATGA
74539303 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
74539325 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
74539350 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
74539372 GAT
1 GAT
74539375 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:74539758 original size:35 final size:36
Alignment explanation
Indices: 74539711--74539817 Score: 157
Period size: 36 Copynumber: 3.0 Consensus size: 36
74539701 CTTGGAAATA
74539711 TATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
74539747 TATT-CGGGTAAGACCCGATGAC-ACGTGTGGAGAT
1 TATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * *
74539781 TTTGTCCGGGTAAGACCCGATAACTTCGTGTGG-GAT
1 TAT-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
74539817 T
1 T
74539818 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
34 14 0.22
35 19 0.29
36 25 0.38
37 7 0.11
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (36 bp):
TATTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:74541402 original size:40 final size:40
Alignment explanation
Indices: 74541083--74541390 Score: 462
Period size: 40 Copynumber: 7.8 Consensus size: 40
74541073 GAGAATTGAG
* *
74541083 AGTGATATA-CCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
74541122 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
74541162 A-TGATGTACCCGAGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74541200 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74541240 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74541280 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
74541320 AGTGATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
74541359 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
74541391 ATCATGCTGG
Statistics
Matches: 247, Mismatches: 18, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
38 19 0.08
39 74 0.30
40 154 0.62
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:74545664 original size:47 final size:47
Alignment explanation
Indices: 74545610--74545888 Score: 398
Period size: 47 Copynumber: 6.0 Consensus size: 47
74545600 TTAGGATTTT
* ** * *
74545610 ATGTGATGAATTTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
74545657 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
74545704 ATGTGATGAATGTGAGCATGAATAT-TGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74545750 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
74545797 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
74545844 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGACGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
74545889 TAGTGTGAAA
Statistics
Matches: 207, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 41 0.20
47 166 0.80
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:74545710 original size:22 final size:22
Alignment explanation
Indices: 74545639--74545710 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
74545629 GTATATATGA
74545639 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
74545661 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
74545686 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
74545708 GAT
1 GAT
74545711 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:74545737 original size:93 final size:94
Alignment explanation
Indices: 74545639--74545888 Score: 430
Period size: 93 Copynumber: 2.7 Consensus size: 94
74545629 GTATATATGA
* *
74545639 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
74545704 ATGTGATGAATGTGAGCATGAATAT-TGT
66 ATGTGATGAATGTGAGCATGAATATGTGT
*
74545732 GATAAGGCCGAATGGCTAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
74545797 ATGTGATGAATGTGAGCATGCATATGTGT
66 ATGTGATGAATGTGAGCATGAATATGTGT
* * *
74545826 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGACGAATGGC
1 GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGC
74545889 TAGTGTGAAA
Statistics
Matches: 148, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 86 0.58
94 62 0.42
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (94 bp):
GATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
ATGTGATGAATGTGAGCATGAATATGTGT
Found at i:74545760 original size:140 final size:141
Alignment explanation
Indices: 74545610--74545896 Score: 423
Period size: 140 Copynumber: 2.0 Consensus size: 141
74545600 TTAGGATTTT
* ** *
74545610 ATGTGATGAATTTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
74545675 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGAATAT-TGTGATAAGG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGAATATATGTGATAAAG
*
74545739 CCGAATGGCTA
131 ACGAATGGCTA
* * *
74545750 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATATGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * *
74545815 TGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAG
66 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGAATATATGTGATAAAG
74545880 ACGAATGGCTA
131 ACGAATGGCTA
*
74545891 GTGTGA
1 ATGTGA
74545897 AATATGTAGG
Statistics
Matches: 129, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
140 107 0.83
141 22 0.17
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (141 bp):
ATGTGATGAATATGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGAATATATGTGATAAAG
ACGAATGGCTA
Found at i:74545852 original size:25 final size:25
Alignment explanation
Indices: 74545777--74545852 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
74545767 ATGCATATAT
74545777 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
74545802 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
74545824 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
74545849 GTGA
1 GTGA
74545853 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:74546159 original size:37 final size:37
Alignment explanation
Indices: 74546051--74546159 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
74546041 GGAAATATAT
*
74546051 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
74546088 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
74546125 TTCGGGTAAGACTCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
74546160 CGTCTGAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:74547463 original size:30 final size:30
Alignment explanation
Indices: 74547429--74547488 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
74547419 ATTTAATACG
74547429 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
74547459 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74547489 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74554502 original size:93 final size:93
Alignment explanation
Indices: 74554395--74554565 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
74554385 GCCCCTAAGT
* *
74554395 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74554460 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
74554488 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74554553 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74554566 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74554562 original size:46 final size:46
Alignment explanation
Indices: 74554390--74554562 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
74554380 AACCCGCCCC
* * *
74554390 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
74554436 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
74554484 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
74554529 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74554563 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:74555025 original size:30 final size:30
Alignment explanation
Indices: 74554991--74555050 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
74554981 ATTTAATACG
74554991 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
74555021 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
74555051 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:74556736 original size:39 final size:39
Alignment explanation
Indices: 74556637--74556723 Score: 131
Period size: 39 Copynumber: 2.2 Consensus size: 39
74556627 GACTTAATGT
*
74556637 CTAGCAGGCCTCT-TGCCGATGATAAATTCAGGTTTATAC
1 CTAGCAGGCCT-TGTGCCGGTGATAAATTCAGGTTTATAC
* *
74556676 CTAGCAGGCCTTGTGCTGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTTATAC
74556715 CTAGCAGGC
1 CTAGCAGGC
74556724 TAATTTCCGG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.02
39 43 0.98
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTTGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:74557962 original size:96 final size:96
Alignment explanation
Indices: 74557798--74557971 Score: 269
Period size: 96 Copynumber: 1.8 Consensus size: 96
74557788 GTGAATTGCT
* * * *
74557798 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACAGGTCGAGGCCGATGCCATGTCCCAGAC
1 GATGCCATATTCCAAACATGGTCTTACACTGGCTCACAGATCGAGGCCGACGCCATGTCCCAGAC
74557863 ATGGTCTTACACTGGCTCTCACAACATCACC
66 ATGGTCTTACACTGGCTCTCACAACATCACC
* * *
74557894 GATGCCATATTCCAAACATGGTCTTACACTGGCTCTCATATC-ATGGCTGACGCCATGTCCCAGA
1 GATGCCATATTCCAAACATGGTCTTACACTGGCTCACAGATCGA-GGCCGACGCCATGTCCCAGA
74557958 CATGGTCTTACACT
65 CATGGTCTTACACT
74557972 AGCGCACATA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
95 1 0.01
96 69 0.99
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (96 bp):
GATGCCATATTCCAAACATGGTCTTACACTGGCTCACAGATCGAGGCCGACGCCATGTCCCAGAC
ATGGTCTTACACTGGCTCTCACAACATCACC
Found at i:74557982 original size:48 final size:48
Alignment explanation
Indices: 74557798--74557984 Score: 196
Period size: 48 Copynumber: 3.9 Consensus size: 48
74557788 GTGAATTGCT
** **
74557798 GATGCCATGTTTCAAACATGGTCTTACACTGGCTCACAGGTCGA-GGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATC-ATGGCC
* * * * **
74557846 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATCACC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCATGGCC
* * * *
74557894 GATGCCATATTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCATGGCC
* * * *
74557942 GACGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCA
74557985 ACCAAATGTC
Statistics
Matches: 114, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
47 1 0.01
48 113 0.99
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCATGGCC
Found at i:74564451 original size:26 final size:26
Alignment explanation
Indices: 74564422--74564474 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74564412 TCAAACATGC
74564422 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
74564448 ATTTTGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
74564474 A
1 A
74564475 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:74565762 original size:24 final size:24
Alignment explanation
Indices: 74565719--74565850 Score: 194
Period size: 24 Copynumber: 5.5 Consensus size: 24
74565709 TTGGCCGGCC
74565719 AAATCCTGCT-CCTTGATCAGCTCCT
1 AAATCCT-CTCCCTT-ATCAGCTCCT
* **
74565744 AAATCTTCTCTTTTATCAGCTCCT
1 AAATCCTCTCCCTTATCAGCTCCT
74565768 AAATCCTCTCCCTTATCAGCTCCT
1 AAATCCTCTCCCTTATCAGCTCCT
*
74565792 AAATCCTCTCCCTCATCAGCTCCT
1 AAATCCTCTCCCTTATCAGCTCCT
74565816 AAATCCTCTCCCTTATCAGCTCCT
1 AAATCCTCTCCCTTATCAGCTCCT
*
74565840 AAATCTTCTCC
1 AAATCCTCTCC
74565851 TGACAGCCTT
Statistics
Matches: 97, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
24 89 0.92
25 8 0.08
ACGTcount: A:0.21, C:0.39, G:0.05, T:0.35
Consensus pattern (24 bp):
AAATCCTCTCCCTTATCAGCTCCT
Found at i:74569766 original size:51 final size:49
Alignment explanation
Indices: 74569609--74569840 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
74569599 CTGGTATGCA
* ** *
74569609 TAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGATACACG
* * ** *
74569658 TAGTAGCCTGCACTAAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCGGATACACG
* * * *
74569708 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGATACACG
* * * *
74569759 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCGGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGATACACG
*
74569808 TAGTAGCCTGCACTTAGTACTACATACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
74569841 TCACAATAGA
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 70 0.45
50 46 0.30
51 39 0.25
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGATACACG
Found at i:74583111 original size:40 final size:39
Alignment explanation
Indices: 74583054--74583161 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 39
74583044 CAACTACAAA
* * *
74583054 TCGACTATATTTGGCACTTAGTGTGCG-TTTCGAGATAGCT
1 TCGACTATA-TAGGCACTAAGTGTGCGAATTCGA-ATAGCT
*
74583094 TCGACTATATAGAGCACTAAGTGTGCGAATTGGAATAGCT
1 TCGACTATATAG-GCACTAAGTGTGCGAATTCGAATAGCT
*
74583134 TCGGCTATATATGGCACTAAGTGTGCGA
1 TCGACTATATA-GGCACTAAGTGTGCGA
74583162 TACCAAGATA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
39 2 0.03
40 53 0.88
41 5 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (39 bp):
TCGACTATATAGGCACTAAGTGTGCGAATTCGAATAGCT
Found at i:74583401 original size:2 final size:2
Alignment explanation
Indices: 74583394--74583428 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
74583384 GATGGATTTG
74583394 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74583429 GATAAATGGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:74587236 original size:28 final size:27
Alignment explanation
Indices: 74587191--74587306 Score: 128
Period size: 28 Copynumber: 4.3 Consensus size: 27
74587181 TGGAGGAAGC
* *
74587191 GTTCTAGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
74587218 GTTTCTGGTGGCTAC-GCCACAAATATCT
1 G-TTCTGGTGGCT-CTGCCACAAATATCT
* *
74587246 GTTCTGGTAGCTCTGCAACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
74587273 ATATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
74587300 GTTCTGG
1 GTTCTGG
74587307 CAGCCATGCC
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
26 6 0.08
27 32 0.43
28 37 0.49
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:74587266 original size:27 final size:25
Alignment explanation
Indices: 74587207--74587306 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 25
74587197 GTGGCTATGC
74587207 CACAAATATCTGTTTCTGGTGGCTAC-G
1 CACAAATATCTG-TTCTGGT-GCT-CTG
74587234 CCACAAATATCTGTTCTGGTAGCTCTG
1 -CACAAATATCTGTTCTGGT-GCTCTG
*
74587261 CAACAAATATCTATATCTGGTGACTCTG
1 C-ACAAATATCTGT-TCTGGTG-CTCTG
74587289 TCAC-AATATCTGTTCTGG
1 -CACAAATATCTGTTCTGG
74587307 CAGCCATGCC
Statistics
Matches: 64, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
26 7 0.11
27 31 0.48
28 25 0.39
29 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (25 bp):
CACAAATATCTGTTCTGGTGCTCTG
Found at i:74592781 original size:29 final size:29
Alignment explanation
Indices: 74592748--74592908 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
74592738 GTGACGAGAT
74592748 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
74592777 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
74592806 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
74592835 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
74592864 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
74592893 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
74592909 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:74600817 original size:29 final size:29
Alignment explanation
Indices: 74600784--74600944 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
74600774 GTGACGAGAT
74600784 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
74600813 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
74600842 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
74600871 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
74600900 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
74600929 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
74600945 GGCTTAAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 118 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:74605724 original size:24 final size:24
Alignment explanation
Indices: 74605694--74605935 Score: 414
Period size: 24 Copynumber: 10.1 Consensus size: 24
74605684 GAATGTGACT
* *
74605694 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
74605718 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74605742 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74605766 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74605790 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74605814 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74605838 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74605862 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74605886 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74605910 ATAGTAAA-CGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74605933 ATA
1 ATA
74605936 TGGTCTTTGC
Statistics
Matches: 212, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
23 18 0.08
24 194 0.92
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:74613721 original size:24 final size:24
Alignment explanation
Indices: 74613691--74613931 Score: 396
Period size: 24 Copynumber: 10.1 Consensus size: 24
74613681 GAATGTGACT
* *
74613691 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
74613715 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74613739 ATAGTAAATCGCACACATAGTG-C
1 ATAGTAAATCGCACACATAGTGCC
74613762 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74613786 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74613810 ATAGTGAATCGCACAC-TAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74613833 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74613857 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74613881 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
74613905 ATAGTAAACCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
74613929 ATA
1 ATA
74613932 TGGTCTTTGC
Statistics
Matches: 208, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
23 45 0.22
24 163 0.78
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:74613812 original size:71 final size:72
Alignment explanation
Indices: 74613691--74613931 Score: 414
Period size: 71 Copynumber: 3.4 Consensus size: 72
74613681 GAATGTGACT
* * ** *
74613691 ATAGCAAATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACA
1 ATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACA
74613756 TAGTG-C
66 TAGTGCC
74613762 ATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACAC-
1 ATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACA
74613826 TAGTGCC
66 TAGTGCC
74613833 ATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACA
1 ATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACA
74613898 TAGTGCC
66 TAGTGCC
*
74613905 ATAGTAAACCGCACACATAGTGCCATA
1 ATAGTAAATCGCACACATAGTGCCATA
74613932 TGGTCTTTGC
Statistics
Matches: 162, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
70 5 0.03
71 124 0.77
72 33 0.20
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (72 bp):
ATAGTAAATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTGAATCGCACACA
TAGTGCC
Found at i:74613860 original size:95 final size:95
Alignment explanation
Indices: 74613697--74613931 Score: 409
Period size: 95 Copynumber: 2.5 Consensus size: 95
74613687 GACTATAGCA
* *
74613697 AATCGCACACATAGTGCTATAGCAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
74613762 ATAGTAAATCGCACACATAGTGCCATAGTG
66 ATAGTAAATCGCACACATAGTGCCATAGTG
*
74613792 AATCGCACACATAGTGCCATAGTGAATCGCACAC-TAGTGCCATAGTAAATCGCACACATAGTGC
1 AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTG-
*
74613856 CATAGTGAATCGCACACATAGTGCCATAGTG
65 CATAGTAAATCGCACACATAGTGCCATAGTG
*
74613887 AATCGCACACATAGTGCCATAGTAAACCGCACACATAGTGCCATA
1 AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATA
74613932 TGGTCTTTGC
Statistics
Matches: 132, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
94 29 0.22
95 93 0.70
96 10 0.08
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (95 bp):
AATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGCCATAGTAAATCGCACACATAGTGC
ATAGTAAATCGCACACATAGTGCCATAGTG
Found at i:74622132 original size:37 final size:37
Alignment explanation
Indices: 74622082--74622174 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 37
74622072 TGGCCATGGA
* ***
74622082 ATGATCTAAGGAGGTCTGCCAGATTCTTTTACATAGC
1 ATGATCTAAGGAGGTCTGCCAAATTCGCCTACATAGC
* *
74622119 ATGATCCAAGGAGGTC-GCTAAATTCGCCTACATAGC
1 ATGATCTAAGGAGGTCTGCCAAATTCGCCTACATAGC
*
74622155 ATGATCTAGGGAGGTCTGCC
1 ATGATCTAAGGAGGTCTGCC
74622175 TATATGGCAT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
36 29 0.63
37 17 0.37
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (37 bp):
ATGATCTAAGGAGGTCTGCCAAATTCGCCTACATAGC
Found at i:74624589 original size:39 final size:39
Alignment explanation
Indices: 74624535--74624630 Score: 165
Period size: 39 Copynumber: 2.5 Consensus size: 39
74624525 TGTAAAAATT
* *
74624535 AAGACACATAATTAAAGTGCATTATTTAAAACACATTTA
1 AAGACTCATAATTAAAGTGCAATATTTAAAACACATTTA
*
74624574 AAGACTCATAATTAAAGTGCAATATTTAAGACACATTTA
1 AAGACTCATAATTAAAGTGCAATATTTAAAACACATTTA
74624613 AAGACTCATAATTAAAGT
1 AAGACTCATAATTAAAGT
74624631 TCAGAATTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.30
Consensus pattern (39 bp):
AAGACTCATAATTAAAGTGCAATATTTAAAACACATTTA
Found at i:74624640 original size:39 final size:38
Alignment explanation
Indices: 74624535--74624654 Score: 159
Period size: 39 Copynumber: 3.0 Consensus size: 38
74624525 TGTAAAAATT
* * *
74624535 AAGACACATAATTAAAGTGCATTATTTAAAACACATTTA
1 AAGACTCATAATTAAAGTGCA-AATTTAAGACACATTTA
74624574 AAGACTCATAATTAAAGTGCAATATTTAAGACACATTTA
1 AAGACTCATAATTAAAGTGCAA-ATTTAAGACACATTTA
*
74624613 AAGACTCATAATTAAAGTTCAGAATTTAAGATGCACATTTA
1 AAGACTCATAATTAAAGTGCA-AATTTAAGA--CACATTTA
74624654 A
1 A
74624655 GATGTTTAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
39 63 0.86
40 1 0.01
41 9 0.12
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (38 bp):
AAGACTCATAATTAAAGTGCAAATTTAAGACACATTTA
Found at i:74626248 original size:10 final size:10
Alignment explanation
Indices: 74626235--74626260 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
74626225 CTCCTCCTAT
74626235 TTTCTTCTAA
1 TTTCTTCTAA
74626245 TTTCTTCTAA
1 TTTCTTCTAA
74626255 TTTCTT
1 TTTCTT
74626261 TCGTTTCACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTCTTCTAA
Found at i:74628684 original size:28 final size:29
Alignment explanation
Indices: 74628638--74628693 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 29
74628628 TACTATAGAT
74628638 TATGAAACTTTAGATTCTGAAAACTATAC
1 TATGAAACTTTAGATTCTGAAAACTATAC
74628667 TATGAAAC-TTAGATTCTGAAAACTATA
1 TATGAAACTTTAGATTCTGAAAACTATA
74628694 GATATTGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (29 bp):
TATGAAACTTTAGATTCTGAAAACTATAC
Found at i:74631357 original size:42 final size:42
Alignment explanation
Indices: 74631308--74631461 Score: 159
Period size: 42 Copynumber: 3.6 Consensus size: 42
74631298 TGAGATTATG
74631308 TGTAAGACCATATCTGGGATATGGCATC-ATTATGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGACTTCA
* * * **
74631350 TGTAAGACCATATTTGGGATATGACATCGATATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCA
* * * * * * *
74631392 CGTAAGACCATAGCTGGGCTATTGGCATCGAAACGAG-GTCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACT-TCA
74631435 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
74631462 TGATGTAGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 59 0.66
43 31 0.34
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCA
Found at i:74641148 original size:40 final size:40
Alignment explanation
Indices: 74641093--74641310 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
74641083 GGATTGATAA
*
74641093 CCGGGCTAAGTCCCGAAGGCAATTATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
*
74641133 CCGGGCTAAGTCCCGAAGGCACTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
*
74641173 CCGGGCTAAGTCCCGAAGGCAATTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
*
74641213 CCGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAT-AT
* * *
74641254 -CGGGCAAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTATAT
**
74641293 -CGGGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
74641311 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 19 0.12
40 142 0.87
41 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
Found at i:74649122 original size:40 final size:40
Alignment explanation
Indices: 74649065--74649265 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
74649055 GATGATAACC
74649065 GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
74649104 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
74649144 GGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
74649182 GGCTAAGT-CCGAAGGCAATTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
74649221 GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
74649260 GGCTAA
1 GGCTAA
74649266 ATACTTGGTT
Statistics
Matches: 153, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
37 9 0.06
38 27 0.18
39 44 0.29
40 73 0.48
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:74649223 original size:77 final size:79
Alignment explanation
Indices: 74649059--74649265 Score: 334
Period size: 77 Copynumber: 2.7 Consensus size: 79
74649049 TATTCGGATG
74649059 ATAACC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCA
*
74649122 TTTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
*
74649137 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCGGCTAAGT-CCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAA
74649200 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
*
74649214 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGCTAA
74649266 ATACTTGGTT
Statistics
Matches: 121, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
77 49 0.40
78 35 0.29
79 28 0.23
80 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:74651438 original size:24 final size:24
Alignment explanation
Indices: 74651194--74651436 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
74651184 GCAAAGACCA
74651194 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74651218 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
74651242 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
74651266 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74651290 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
74651314 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
74651338 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
74651362 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74651386 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
74651410 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
74651434 TAT
1 TAT
74651437 AGTCACATTC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:74659433 original size:24 final size:24
Alignment explanation
Indices: 74659189--74659431 Score: 396
Period size: 24 Copynumber: 10.1 Consensus size: 24
74659179 GCAAAGACCA
*
74659189 TATGGCACTATGTGTGCGGTTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74659213 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
74659237 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
74659261 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
* *
74659285 TATGGCACTAGGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
74659309 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
74659333 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74659357 TATAGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74659381 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
74659405 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
74659429 TAT
1 TAT
74659432 AGTCACATTC
Statistics
Matches: 208, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 208 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Done.