Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 261 of 427
Found at i:75036571 original size:26 final size:26
Alignment explanation
Indices: 75036541--75036596 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
75036531 TGAAATTCCC
75036541 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75036567 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
75036593 ATCA
1 ATCA
75036597 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:75037059 original size:43 final size:43
Alignment explanation
Indices: 75036929--75037081 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 43
75036919 GGGTGTTACA
* ** * *
75036929 AAGACCATGTTTGGGACATTGGCAT-TGTATTGTGTTTACGTGT
1 AAGACCATGTCTGGGACATTGGCATCAATA-TGTGATTACATGT
* ** * * *
75036972 AAGACCATGTCTGGGAAATTGGCATCGTTATATGATTTCCTGT
1 AAGACCATGTCTGGGACATTGGCATCAATATGTGATTACATGT
*
75037015 AAGACCATGTCTGGGACATTGGCATCAATATGTGATAACATGT
1 AAGACCATGTCTGGGACATTGGCATCAATATGTGATTACATGT
* * *
75037058 AAGACCTTATCTGGGATA-TGGCAT
1 AAGACCATGTCTGGGACATTGGCAT
75037082 TGTAGGAGCT
Statistics
Matches: 91, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 6 0.07
43 83 0.91
44 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCAATATGTGATTACATGT
Found at i:75040651 original size:46 final size:44
Alignment explanation
Indices: 75040598--75040719 Score: 149
Period size: 45 Copynumber: 2.7 Consensus size: 44
75040588 ACTGTGAGCT
*
75040598 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGACGT--GTC
*
75040644 AGTGTAAGACATG-CTGGGACATGCACCAGCTACGAGACGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGTGTC
* *
75040687 AGCGTAAGACCATGTTTGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
75040720 ACAGATATGC
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 11 0.16
44 6 0.09
45 30 0.45
46 20 0.30
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.20
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTACGAGACGTGTC
Found at i:75047676 original size:46 final size:47
Alignment explanation
Indices: 75047618--75047886 Score: 198
Period size: 46 Copynumber: 5.7 Consensus size: 47
75047608 GGGCTATTGT
*
75047618 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCATTGTGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA-TGTGA
* * * * *
75047664 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTAAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATG-TGA
* *
75047712 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC-ATG-TG-A
* * * * *
75047759 -AGTCAGTGTAAGA-CAAGTCTGGGACAT-GCATC-GACT-ACGAGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATGTGA
* * * ** *
75047801 CGTGTCAGTGTAAGACCATGTCTGGGACATGGTATCGGCACAGATATGCTA
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCATGTG--A
* *
75047852 GAGCCTGTGTAAGACCATGCCTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
75047887 AGCATCTTAC
Statistics
Matches: 177, Mismatches: 31, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 13 0.07
45 16 0.09
46 56 0.32
47 32 0.18
48 24 0.14
49 2 0.01
50 30 0.17
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCATGTGA
Found at i:75047862 original size:94 final size:94
Alignment explanation
Indices: 75047620--75047890 Score: 315
Period size: 94 Copynumber: 2.9 Consensus size: 94
75047610 GCTATTGTGA
**
75047620 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAT-TGTGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATATGT-AGAGCCAGTGTAAGACCATGT
*
75047684 CTGGGACATGGCATCAGCATTAAGACGAGT
65 CTGGGACATGGCATCAGCACTAAGACGAGT
* * * *
75047714 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGTCAGTGTAAGA-CAAGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-AGATATGTAGAGCCAGTGTAAGACCATGT
*
75047777 CTGGGACAT-GCATC-G-ACTACGA-GACGT
65 CTGGGACATGGCATCAGCACTAAGACGA-GT
* *
75047804 G-TCAGTGTAAGACCATGTCTGGGACATGGTATCGGCACAGATATGCTAGAGCCTGTGTAAGACC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CAGATATG-TAGAGCCAGTGTAAGACC
*
75047868 ATGCCTGGGACATGGCATCAGCA
61 ATGTCTGGGACATGGCATCAGCA
75047891 TCTTACCCCA
Statistics
Matches: 150, Mismatches: 14, Indels: 22
0.81 0.08 0.12
Matches are distributed among these distances:
89 3 0.02
90 17 0.11
91 15 0.10
92 17 0.11
93 16 0.11
94 58 0.39
95 14 0.09
96 8 0.05
97 1 0.01
98 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATATGTAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCAGCACTAAGACGAGT
Found at i:75049033 original size:21 final size:22
Alignment explanation
Indices: 75048994--75049034 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75048984 TCAAATCGGT
*
75048994 CACACGGGTGTGTTGCCCCTTA
1 CACACGGGCGTGTTGCCCCTTA
75049016 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
75049035 GCGTCTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.37, G:0.29, T:0.22
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTTA
Found at i:75050702 original size:43 final size:43
Alignment explanation
Indices: 75050655--75050738 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
75050645 AATGCCAACG
*
75050655 TCCCAGAC-GTGGTCTTACATGTA-ATCACATATCGATGCCATTC
1 TCCCAGACAG-GGTCTTACATGCACA-CACATATCGATGCCATTC
* *
75050698 TCCCAGACAGGGTCTTACTTGCACACATATATCGATGCCAT
1 TCCCAGACAGGGTCTTACATGCACACACATATCGATGCCAT
75050739 GGTCTTACTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 34 0.94
44 2 0.06
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACATGCACACACATATCGATGCCATTC
Found at i:75051918 original size:14 final size:15
Alignment explanation
Indices: 75051901--75051929 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75051891 GCATGAAAAT
75051901 TTCACACA-AATAAA
1 TTCACACATAATAAA
75051915 TTCACACATAATAAA
1 TTCACACATAATAAA
75051930 AACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:75064006 original size:40 final size:39
Alignment explanation
Indices: 75063841--75064024 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75063831 AAATTGAATG
* * *
75063841 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75063881 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75063921 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75063961 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75064000 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75064025 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75064049 original size:80 final size:81
Alignment explanation
Indices: 75063881--75064069 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75063871 GCTGGAAATT
* * * *
75063881 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75063946 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75063962 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75064025 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75064041 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75064070 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75072017 original size:24 final size:23
Alignment explanation
Indices: 75071973--75072017 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
75071963 GGATAGCAAA
* **
75071973 TATCGGGAAGTTCAAGCGAGCAC
1 TATCGGGAAGCTCAAAAGAGCAC
75071996 TATCGGGAAGCTCACAAAGAGC
1 TATCGGGAAGCTCA-AAAGAGC
75072018 CAATTTAACG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.16
Consensus pattern (23 bp):
TATCGGGAAGCTCAAAAGAGCAC
Found at i:75083386 original size:40 final size:40
Alignment explanation
Indices: 75083278--75083487 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
75083268 CGGGATTTAA
* * * * *
75083278 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
75083318 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75083358 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75083398 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
75083438 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
75083478 CCGGATATAT
1 CCGGATATAT
75083488 TTCCAATGTT
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:75088834 original size:23 final size:23
Alignment explanation
Indices: 75088808--75088855 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
75088798 AAAAAAAAAC
75088808 ATGTGTACTTATTAGTAGTAGTA
1 ATGTGTACTTATTAGTAGTAGTA
75088831 ATGTGTACTTATTAGTAGTAGTA
1 ATGTGTACTTATTAGTAGTAGTA
75088854 AT
1 AT
75088856 CTTCTAAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.44
Consensus pattern (23 bp):
ATGTGTACTTATTAGTAGTAGTA
Found at i:75097957 original size:27 final size:27
Alignment explanation
Indices: 75097832--75097961 Score: 100
Period size: 27 Copynumber: 4.8 Consensus size: 27
75097822 CCTTAATTGA
* ** *
75097832 TAAAATGACAGTTTTGCCCCTATGTGC
1 TAAAATGACTGTTTTGCCCCTACATGG
* *
75097859 TAAAATGATTGTTTTGCCCTTACGA-GG
1 TAAAATGACTGTTTTGCCCCTAC-ATGG
** * * * *
75097886 TAAAATGTTTGTTCTACCCTTATATGG
1 TAAAATGACTGTTTTGCCCCTACATGG
***
75097913 TAAAATGACTGAAATGCCCCTACATGG
1 TAAAATGACTGTTTTGCCCCTACATGG
*
75097940 TAAATTGACTGTTTTGCCCCTA
1 TAAAATGACTGTTTTGCCCCTA
75097962 TGTGAGGTAT
Statistics
Matches: 79, Mismatches: 22, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
26 1 0.01
27 78 0.99
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCCTACATGG
Found at i:75098346 original size:18 final size:18
Alignment explanation
Indices: 75098305--75098347 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
75098295 TACTATTTAA
*
75098305 ACTGTTACTGCACTGATT
1 ACTGTTACTACACTGATT
* * *
75098323 ATTGTTACTACTCTGTTT
1 ACTGTTACTACACTGATT
75098341 ACTGTTA
1 ACTGTTA
75098348 ATGCAATGGG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.47
Consensus pattern (18 bp):
ACTGTTACTACACTGATT
Found at i:75100572 original size:31 final size:31
Alignment explanation
Indices: 75100531--75100594 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
75100521 CCTTTTCATA
*
75100531 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
75100562 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
75100593 TT
1 TT
75100595 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:75100837 original size:24 final size:24
Alignment explanation
Indices: 75100786--75100928 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
75100776 GCTTTATCAT
*
75100786 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
75100811 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
75100835 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
75100858 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
75100882 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
75100906 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75100929 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75100865 original size:47 final size:48
Alignment explanation
Indices: 75100786--75100927 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
75100776 GCTTTATCAT
* *
75100786 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
75100835 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
75100882 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
75100928 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:75100886 original size:71 final size:72
Alignment explanation
Indices: 75100785--75100928 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
75100775 TGCTTTATCA
*
75100785 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
75100850 GCCCTTT
66 GCCCTTT
* * **
75100857 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
75100920 AGCCCTTT
65 AGCCCTTT
75100928 T
1 T
75100929 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:75101003 original size:20 final size:20
Alignment explanation
Indices: 75100978--75101038 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
75100968 TTATGATTAC
75100978 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75100998 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
75101018 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
75101038 A
1 A
75101039 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75101113 original size:25 final size:25
Alignment explanation
Indices: 75101081--75101128 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75101071 ATACATAAAC
* * *
75101081 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75101106 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75101129 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75102398 original size:27 final size:27
Alignment explanation
Indices: 75102369--75102950 Score: 744
Period size: 27 Copynumber: 21.6 Consensus size: 27
75102359 GGGTATTTTA
* * *
75102369 GTAATTTTGTAAATCGAGAGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
75102396 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
75102423 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
75102450 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
75102477 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
75102504 ATAATTATGTAAATCG-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
75102530 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* **
75102557 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
75102584 GTAATTTTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
75102611 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
75102638 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
75102665 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
75102692 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
75102719 ATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
**
75102746 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
75102773 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
75102800 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
75102827 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
75102854 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** ** *
75102881 GTAATTTTACAAATAAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
75102908 GTAATTCTATAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
75102935 GTAATTCTGTAAATCG
1 GTAATTCTGTAAATCG
75102951 GGAGTACTTT
Statistics
Matches: 487, Mismatches: 57, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
26 25 0.05
27 457 0.94
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:75111577 original size:47 final size:47
Alignment explanation
Indices: 75111505--75111771 Score: 208
Period size: 47 Copynumber: 5.6 Consensus size: 47
75111495 TTTGTGCGCT
*
75111505 AGTGTAAGA-CATGTCTGGGATAT-GCATCGACCACATTATGACAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGA-AGCC
* * ** * *
75111551 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTACAAGATG-TGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAAGCC
* * ** *
75111596 AGTGTAAGACCATGTCAGGGACATGGCATCG-GCATGGTTAAGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CATT-A-TGA-AGCC
* * * **
75111646 AGTGTAAGACCATG-CTTGGGACATGGCATCGGCCTCAATTTTGATATTC
1 AGTGTAAGACCATGTC-TGGGACATGGCATCGACCAC-ATTATGA-AGCC
* *
75111695 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTA-ATGGATG-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CACAT-TATGAAGCC
*
75111742 AGTGTAAGACTATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
75111772 AGCATTACAC
Statistics
Matches: 173, Mismatches: 35, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
45 26 0.15
46 15 0.09
47 58 0.34
48 4 0.02
49 37 0.21
50 30 0.17
51 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAAGCC
Found at i:75111718 original size:99 final size:95
Alignment explanation
Indices: 75111551--75111771 Score: 251
Period size: 96 Copynumber: 2.3 Consensus size: 95
75111541 TATGACAGCC
*
75111551 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATGTGTCAGTGTAAGACCATGTCAGGG
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTCAGGG
75111616 ACATGGCATCGGCATGGTTAAGTGAGAGCT
66 ACATGGCATCGGCATGGTTAAGTGAGAGCT
75111646 AGTGTAAGACCATG-CTTGGGACATGGCATCGGCCT-CAATTTTGATAT-TCAGTGTAAGACCAT
1 AGTGTAAGACCATGTC-TGGGACAT-GCATCGG-CTACAA----GATATGTCAGTGTAAGACCAT
* * *
75111708 GTCTGGGACATGGCATC-G-A--CTTAA-TGGATGAGCC
59 GTCAGGGACATGGCATCGGCATGGTTAAGT-GA-GAGCT
*
75111742 AGTGTAAGACTATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC
75111772 AGCATTACAC
Statistics
Matches: 111, Mismatches: 5, Indels: 19
0.82 0.04 0.14
Matches are distributed among these distances:
94 2 0.02
95 28 0.25
96 41 0.37
97 4 0.04
98 1 0.01
99 31 0.28
100 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTCAGGG
ACATGGCATCGGCATGGTTAAGTGAGAGCT
Found at i:75113815 original size:41 final size:41
Alignment explanation
Indices: 75113758--75113841 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
75113748 CTTTCTATCA
75113758 TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
1 TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
*
75113799 TTCTTGTATTACCTTCTCTAAATTATTAATGAAACTAACAT
1 TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
75113840 TT
1 TT
75113842 TGTTACCTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44
Consensus pattern (41 bp):
TTCTTGTACTACCTTCTCTAAATTATTAATGAAACTAACAT
Found at i:75116939 original size:46 final size:46
Alignment explanation
Indices: 75116886--75117061 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75116876 TATTTGGGCA
75116886 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75116932 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75116979 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75117025 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75117062 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75117041 original size:93 final size:93
Alignment explanation
Indices: 75116882--75117053 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75116872 GGGATATTTG
* *
75116882 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75116947 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75116975 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75117040 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75117054 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75120033 original size:15 final size:15
Alignment explanation
Indices: 75120013--75120081 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
75120003 GTATCTTGGG
75120013 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
75120028 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
75120043 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
75120058 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
75120073 TTTCTTTAT
1 TTTCTTTAT
75120082 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:75120082 original size:30 final size:30
Alignment explanation
Indices: 75120004--75120091 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
75119994 CATAGTATCG
* * * *
75120004 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
75120034 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
75120064 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
75120092 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:75122526 original size:46 final size:46
Alignment explanation
Indices: 75122473--75122648 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75122463 TATTTGGGCA
75122473 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75122519 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75122566 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75122612 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75122649 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75122628 original size:93 final size:93
Alignment explanation
Indices: 75122469--75122640 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75122459 GGGATATTTG
* *
75122469 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75122534 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75122562 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75122627 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75122641 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75125894 original size:42 final size:42
Alignment explanation
Indices: 75125824--75125946 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 42
75125814 TTAGGGTTAT
75125824 TTGAG-TTTACGTGTAAGACCATATCTGGGATATGGCATCG-A
1 TTGAGATTT-CGTGTAAGACCATATCTGGGATATGGCATCGAA
* * *
75125865 TATGAGATTTCGTGTAAGACTATAGCTGGGCTATTGGCATCGAA
1 T-TGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGAA
** *
75125909 TTGAGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TTGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
75125947 TGGTATGGTA
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.43
43 36 0.52
44 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
TTGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGAA
Found at i:75126567 original size:2 final size:2
Alignment explanation
Indices: 75126560--75126588 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
75126550 ATTGGTTACG
75126560 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75126589 GCATATGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75134624 original size:47 final size:46
Alignment explanation
Indices: 75134472--75134695 Score: 190
Period size: 47 Copynumber: 4.8 Consensus size: 46
75134462 ATATATACTT
* *
75134472 GCTAATACATGTCCC-GAACATGTCTTACACTAGCACA-A-CTCTTAG
1 GCTAATGCATGTCCCAG-ACATGTCTTACACTGGCACACATCTC-TAG
* * * * *
75134517 TC-AATGCATGTCCTAGACACGTCTTACACTGGCTA-TCATCGTCGAG
1 GCTAATGCATGTCCCAGACATGTCTTACACTGGC-ACACATC-TCTAG
* * *
75134563 GCTGATGCAAGTCCCAGACATGTCTTACACTGGCACACATCTCTAC
1 GCTAATGCATGTCCCAGACATGTCTTACACTGGCACACATCTCTAG
* * * * * *
75134609 GCTGATGCCATGTCCCAGACTTGGTCTTACATTGGCACTCATAATGT-G
1 GCTAATG-CATGTCCCAGACAT-GTCTTACACTGGCACACAT-CTCTAG
*
75134657 GCCAATGCATGTCCCAGACATGTCTTACACTGGCACACA
1 GCTAATGCATGTCCCAGACATGTCTTACACTGGCACACA
75134696 AGAAGTCTAA
Statistics
Matches: 142, Mismatches: 27, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
44 25 0.18
45 4 0.03
46 31 0.22
47 58 0.41
48 22 0.15
49 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.26
Consensus pattern (46 bp):
GCTAATGCATGTCCCAGACATGTCTTACACTGGCACACATCTCTAG
Found at i:75136649 original size:47 final size:47
Alignment explanation
Indices: 75136439--75136656 Score: 182
Period size: 47 Copynumber: 4.6 Consensus size: 47
75136429 TTTGTGTGCT
* *
75136439 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCACCATT-ATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGA-C-TTGATGATGAGCC
* * * * *
75136485 AGTGTAAGACCATATCTAGGACATCGCATCGGA-TTGA-GACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATGA--TGAGCC
** * * *
75136532 AGTGTAAGACCATGTCTGGGACATGGTGTCGGCCTTAATCGCGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGAT---GATGAGCC
75136581 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGTATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATG-ATGAGCC
*
75136628 AGTGTAAGATCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
75136657 TGTCATCCTA
Statistics
Matches: 140, Mismatches: 19, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
44 4 0.03
45 2 0.01
46 11 0.08
47 77 0.55
48 14 0.10
49 30 0.21
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATGATGAGCC
Found at i:75143688 original size:14 final size:14
Alignment explanation
Indices: 75143669--75143709 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
75143659 TTTCAAACTC
75143669 TTTTTATTTTTATT
1 TTTTTATTTTTATT
*
75143683 TTTTTACTTTTATT
1 TTTTTATTTTTATT
75143697 TCTATTTATTTTT
1 T-T-TTTATTTTT
75143710 GAAAACTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 14 0.61
15 1 0.04
16 8 0.35
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:75143695 original size:20 final size:21
Alignment explanation
Indices: 75143670--75143708 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
75143660 TTCAAACTCT
*
75143670 TTTTATTTTTATTT-TTTTAC
1 TTTTATTTCTATTTATTTTAC
75143690 TTTTATTTCTATTTATTTT
1 TTTTATTTCTATTTATTTT
75143709 TGAAAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTATTTCTATTTATTTTAC
Found at i:75148307 original size:25 final size:24
Alignment explanation
Indices: 75148251--75148358 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
75148241 CTGGAGGCCT
75148251 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
75148275 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGC-AA
*
75148300 AGCCCTTTTAATAAACTGGGGTAAA
1 AGCCCTTTTAATAAACTGGGG-CAA
** * *
75148325 AGCCCTTTTCGGTAAACTAGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
75148350 AGCCCTTTT
1 AGCCCTTTT
75148359 TGCACTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
23 7 0.10
24 13 0.18
25 43 0.60
26 9 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:75148429 original size:20 final size:20
Alignment explanation
Indices: 75148406--75148472 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
75148396 TTATGAATAC
75148406 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
75148426 ATCATATGCATTTCATACAT
1 ATCATGTGCATATCATACAT
75148446 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
75148466 ATCATGT
1 ATCATGT
75148473 ATATCAAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75148435 original size:40 final size:39
Alignment explanation
Indices: 75148391--75148470 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 39
75148381 TCCCAACCTA
75148391 ATGCATTATGAATAC-ATCATGTGCATATCATA-CATATCAT
1 ATGCATT-T-AATACAATCATGTGCATATCATATCA-ATCAT
*
75148431 ATGCATTTCATACATATCATGTGCATATCATATCAATCAT
1 ATGCATTTAATACA-ATCATGTGCATATCATATCAATCAT
75148471 GTATATCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
38 4 0.11
39 1 0.03
40 29 0.81
41 2 0.06
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (39 bp):
ATGCATTTAATACAATCATGTGCATATCATATCAATCAT
Found at i:75156097 original size:31 final size:31
Alignment explanation
Indices: 75156056--75156119 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
75156046 CCTTTTCATA
*
75156056 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
75156087 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
75156118 TT
1 TT
75156120 ATGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:75156365 original size:24 final size:24
Alignment explanation
Indices: 75156313--75156502 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
75156303 GCTTTATCAT
*
75156313 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
75156338 ATAACTAGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
75156362 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
75156385 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
75156409 ATAACTGAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
75156433 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
75156457 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75156480 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75156503 TCACTTCCTC
Statistics
Matches: 149, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
23 43 0.29
24 95 0.64
25 11 0.07
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75156389 original size:47 final size:48
Alignment explanation
Indices: 75156312--75156503 Score: 273
Period size: 47 Copynumber: 4.0 Consensus size: 48
75156302 TGCTTTATCA
* * *
75156312 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
75156361 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
75156408 GATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
75156456 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
75156503 T
1 T
75156504 CACTTCCTCC
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
47 68 0.52
48 49 0.38
49 13 0.10
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:75156444 original size:95 final size:96
Alignment explanation
Indices: 75156313--75156502 Score: 303
Period size: 95 Copynumber: 2.0 Consensus size: 96
75156303 GCTTTATCAT
* *
75156313 ATAACTGGAGGCCTAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTTATAACTGGGGCATAAG
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
*
75156378 CCCTTTAATAACTGGGGCGTAAGCCCTTTTG
66 CCCTTTAATAACTGGGGCATAAGCCCTTTTG
* * *
75156409 ATAACT-GAGGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
75156472 GCCCTTTAATAACTGGGGCATAAGCCCTTTT
65 GCCCTTTAATAACTGGGGCATAAGCCCTTTT
75156503 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
95 77 0.89
96 10 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (96 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG
CCCTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:75156575 original size:9 final size:9
Alignment explanation
Indices: 75156561--75156637 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
75156551 ATCTCGTGTG
75156561 CATATCATA
1 CATATCATA
*
75156570 CATATCATGTG
1 CATATCA--TA
75156581 CATATCATA
1 CATATCATA
* *
75156590 CATGTCATGTG
1 CATATCA--TA
75156601 CATATCATA
1 CATATCATA
*
75156610 CATATCATGTG
1 CATATCA--TA
75156621 CATATCATA
1 CATATCATA
75156630 CATATCAT
1 CATATCAT
75156638 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:75156580 original size:20 final size:20
Alignment explanation
Indices: 75156557--75156639 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
75156547 GAACATCTCG
75156557 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
75156577 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
75156597 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
75156617 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
75156637 TGT
1 TGT
75156640 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:75156586 original size:11 final size:11
Alignment explanation
Indices: 75156557--75156628 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
75156547 GAACATCTCG
75156557 TGTGCATATCA
1 TGTGCATATCA
*
75156568 --TACATATCA
1 TGTGCATATCA
75156577 TGTGCATATCA
1 TGTGCATATCA
* *
75156588 --TACATGTCA
1 TGTGCATATCA
75156597 TGTGCATATCA
1 TGTGCATATCA
*
75156608 --TACATATCA
1 TGTGCATATCA
75156617 TGTGCATATCA
1 TGTGCATATCA
75156628 T
1 T
75156629 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:75156722 original size:25 final size:25
Alignment explanation
Indices: 75156676--75156723 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
75156666 ATATATAAAC
* * * *
75156676 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75156701 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75156724 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75157910 original size:27 final size:26
Alignment explanation
Indices: 75157880--75157957 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
75157870 AGGCATATTC
75157880 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
75157907 GTCACTTTATCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTACAGGGG-TATTACG
* *
75157934 GTCTTTTTACCTAATAGGGGTATT
1 GTCATTTTACCT-ACAGGGGTATT
75157958 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 4 0.09
27 36 0.84
28 3 0.07
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:75158146 original size:54 final size:54
Alignment explanation
Indices: 75158088--75158227 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
75158078 TGTAAATCAG
75158088 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * * * *
75158142 GGGTATTTTGATAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* ** *
75158196 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
75158228 AAATAGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:75158225 original size:27 final size:27
Alignment explanation
Indices: 75157975--75158281 Score: 147
Period size: 27 Copynumber: 11.3 Consensus size: 27
75157965 TTTCATCCTA
* * * * * *
75157975 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* * * *
75158002 CAAGGGTATTTCAGTAATTTTGTTAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *
75158029 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTATAAA-T
* *
75158058 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTATAAAT
* * *
75158085 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
** ** * * *
75158112 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
75158139 CAAGGGTATTTT-GATAATTTTACAAA-
1 CAAGGGTATTTTAG-TAATTTTATAAAT
* * *
75158165 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AAGGGTATTTTAGTAATTTTATAAAT
*
75158192 CTAAGGGTATTTTAGTAATTTTGTAAAT
1 C-AAGGGTATTTTAGTAATTTTATAAAT
* *** * *
75158220 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
* *** *
75158247 TAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTATAAAT
*
75158274 CGAGGGTA
1 CAAGGGTA
75158282 AAACTGTAAT
Statistics
Matches: 224, Mismatches: 47, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.01
27 191 0.85
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAT
Found at i:75158237 original size:54 final size:54
Alignment explanation
Indices: 75158179--75158402 Score: 161
Period size: 54 Copynumber: 4.1 Consensus size: 54
75158169 GGGTATTTTG
* *** * *
75158179 GTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAA-T
1 GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
** *
75158232 AGTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
1 -GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
** * ** *
75158287 GTAATTCTGTAAA-TCGAGGGTAAAACGGTAATTCTATAAGTCGAGGGTAAAAC-
1 GTAATTCTACAAACT-AAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
* ** * * * * *
75158340 GATAATTATGTAAA-TCAGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAAC-
1 G-TAATTCTACAAACT-AAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
75158394 GATAATTCT
1 G-TAATTCT
75158403 GTAAATCGGG
Statistics
Matches: 145, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.01
54 142 0.98
55 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (54 bp):
GTAATTCTACAAACTAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACT
Found at i:75158282 original size:27 final size:27
Alignment explanation
Indices: 75158204--75158410 Score: 224
Period size: 27 Copynumber: 7.7 Consensus size: 27
75158194 AAGGGTATTT
*
75158204 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
75158231 TAGTAATTCTGTAAATTAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
75158258 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
75158285 CT-GTAATTCTGTAAATCGAGGGTAAAA
1 -TAGTAATTCTGTAAATCGAGGGTAAAA
** * *
75158312 CGGTAATTCTATAAGTCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
75158339 -CGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
* * *
75158366 TGGTAATTATGTAAATCGGGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
75158393 -CGATAATTCTGTAAATCG
1 TAG-TAATTCTGTAAATCG
75158411 GGGATACTTT
Statistics
Matches: 155, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.02
27 150 0.97
28 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:75158427 original size:54 final size:53
Alignment explanation
Indices: 75158206--75158413 Score: 249
Period size: 54 Copynumber: 3.9 Consensus size: 53
75158196 GGGTATTTTA
* * * ** *
75158206 GTAATTTTGTAAATCGAGGGTAAAA-TAGTAATTCTGTAAATTAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAA-TCGGGGTAAAATG
*
75158260 GTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAAC-GATAATTCTGTAAATCG-GGGTAAAATG
* *
75158314 GTAATTCTATAAGTCGAGGGTAAAACGATAATTATGTAAATCAGGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATC-GGGGTAAAATG
* * *
75158368 GTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGG
1 GTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGGGG
75158414 ATACTTTGGT
Statistics
Matches: 134, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
53 6 0.04
54 127 0.95
55 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (53 bp):
GTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGGGGTAAAATG
Found at i:75158452 original size:27 final size:26
Alignment explanation
Indices: 75158422--75158511 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
75158412 GGATACTTTG
75158422 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
75158449 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * * *
75158476 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAATCGAA-GGTATTTCA
75158503 GTAATTTTA
1 GTAATTTTA
75158512 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.07
27 48 0.89
28 2 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:75158525 original size:27 final size:27
Alignment explanation
Indices: 75158422--75158526 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
75158412 GGATACTTTG
* *
75158422 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
75158449 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
75158476 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
75158503 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
75158527 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:75160438 original size:26 final size:25
Alignment explanation
Indices: 75160330--75160437 Score: 132
Period size: 25 Copynumber: 4.4 Consensus size: 25
75160320 CTGGAGGCCT
*
75160330 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
75160354 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
75160379 AGCCTTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
75160404 AGCCCTTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
75160429 AGCCCTTTT
1 AGCCCTTTT
75160438 TGCACTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 7 0.09
24 13 0.18
25 43 0.58
26 11 0.15
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:75160508 original size:20 final size:20
Alignment explanation
Indices: 75160485--75160587 Score: 119
Period size: 20 Copynumber: 5.3 Consensus size: 20
75160475 TTATGAATAC
*
75160485 ATCATGTGCATATCACACAT
1 ATCATGTGCATATCATACAT
75160505 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75160525 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
75160545 ATCATGT--ATATCA-A-AT
1 ATCATGTGCATATCATACAT
* *
75160561 ACCATGCGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
75160581 ATCATGT
1 ATCATGT
75160588 ATATCAAATA
Statistics
Matches: 71, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
15 1 0.01
16 5 0.07
17 1 0.01
18 12 0.17
19 1 0.01
20 48 0.68
21 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75160516 original size:11 final size:11
Alignment explanation
Indices: 75160485--75160540 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
75160475 TTATGAATAC
75160485 ATCATGTGCAT
1 ATCATGTGCAT
**
75160496 ATCA--CACAT
1 ATCATGTGCAT
75160505 ATCATGTGCAT
1 ATCATGTGCAT
*
75160516 ATCA--TACAT
1 ATCATGTGCAT
75160525 ATCATGTGCAT
1 ATCATGTGCAT
75160536 ATCAT
1 ATCAT
75160541 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:75160557 original size:9 final size:10
Alignment explanation
Indices: 75160502--75160557 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
75160492 GCATATCACA
75160502 CATATCATGT
1 CATATCATGT
*
75160512 GCATATCAT-A
1 -CATATCATGT
75160522 CATATCATGT
1 CATATCATGT
*
75160532 GCATATCATAT
1 -CATATCATGT
75160543 CA-ATCATGT
1 CATATCATGT
75160552 -ATATCA
1 CATATCA
75160558 AATACCATGC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 18 0.47
10 2 0.05
11 17 0.45
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.36
Consensus pattern (10 bp):
CATATCATGT
Found at i:75160604 original size:16 final size:16
Alignment explanation
Indices: 75160547--75160604 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 16
75160537 TCATATCAAT
75160547 CATGTATATCAAATAC
1 CATGTATATCAAATAC
* * *
75160563 CATGCGCATATCATATCAAT
1 CAT--GTATATCAAAT--AC
75160583 CATGTATATCAAATAC
1 CATGTATATCAAATAC
75160599 CATGTA
1 CATGTA
75160605 CCAAATTCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 10 0.31
18 18 0.56
20 4 0.12
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (16 bp):
CATGTATATCAAATAC
Found at i:75168905 original size:40 final size:40
Alignment explanation
Indices: 75168741--75168905 Score: 192
Period size: 40 Copynumber: 4.1 Consensus size: 40
75168731 CGGAATTTAA
** *
75168741 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75168781 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
75168821 CCGGATTTAGTAACTCGCACCAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
75168861 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75168901 CCGGA
1 CCGGA
75168906 CATCATTCGA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.04
40 92 0.87
41 10 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75170800 original size:62 final size:62
Alignment explanation
Indices: 75170703--75170831 Score: 222
Period size: 62 Copynumber: 2.1 Consensus size: 62
75170693 CACATCATTA
* * *
75170703 TTCCCAATTTACATCTGATGTTCGTCCCATTGAATTTCTCGGTTCTCTGATGGATATCTCAT
1 TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGATTCTCTAATGGATATCTCAT
*
75170765 TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTTGATTCTCTAATGGATATCTCAT
1 TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGATTCTCTAATGGATATCTCAT
75170827 TTCCC
1 TTCCC
75170832 GTCAATTCAT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (62 bp):
TTCCCAATTTACATCTGATGTTAGTCCCATTGAATTTCTCGATTCTCTAATGGATATCTCAT
Found at i:75172721 original size:10 final size:10
Alignment explanation
Indices: 75172706--75172734 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
75172696 ATTGAAGATC
75172706 TCCCTTCAAT
1 TCCCTTCAAT
75172716 TCCCTTCAAT
1 TCCCTTCAAT
75172726 TCCCTTCAA
1 TCCCTTCAA
75172735 GAGTTCTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.41, G:0.00, T:0.38
Consensus pattern (10 bp):
TCCCTTCAAT
Found at i:75178327 original size:40 final size:40
Alignment explanation
Indices: 75178237--75178501 Score: 331
Period size: 40 Copynumber: 6.7 Consensus size: 40
75178227 TCGAATGATG
* * *
75178237 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
75178277 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75178317 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
75178356 TAGGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
75178396 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75178436 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
75178477 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75178502 AACGAGTAGC
Statistics
Matches: 198, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 32 0.16
40 156 0.79
41 10 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75184502 original size:40 final size:40
Alignment explanation
Indices: 75184443--75184650 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 40
75184433 CAATTGAATG
* * *
75184443 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
75184483 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
75184523 ACATCCGGGCTAAGACCCGAAGGCATTCGTACAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
75184563 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
75184603 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
75184643 ATATCCGG
1 ATATCCGG
75184651 TTGTAATCCG
Statistics
Matches: 143, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:75184581 original size:80 final size:80
Alignment explanation
Indices: 75184445--75184650 Score: 252
Period size: 80 Copynumber: 2.6 Consensus size: 80
75184435 ATTGAATGAT
* * * * * *
75184445 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
75184510 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * * *
75184525 ATCCGGGCTAAGACCCGAAGGCATTCGTACAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
75184590 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
75184605 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
75184651 TTGTAATCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:75189489 original size:40 final size:40
Alignment explanation
Indices: 75189412--75189591 Score: 233
Period size: 40 Copynumber: 4.5 Consensus size: 40
75189402 TGATGTCGGG
* *
75189412 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGA
1 CTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGA
*
75189452 CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGA
1 CTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGA
*
75189492 CTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAATCCGGG
1 CTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGA
* *
75189532 TTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA-CCGGG
1 CTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AATCCGGA
*
75189572 CTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTG
75189592 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 117 0.91
41 10 0.08
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
CTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGA
Found at i:75189609 original size:80 final size:80
Alignment explanation
Indices: 75189435--75189624 Score: 203
Period size: 80 Copynumber: 2.4 Consensus size: 80
75189425 GCTTTGTGCT
* ** *
75189435 AAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATC
1 AAGTTACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATC
**
75189500 CGAAGGCATTTGTGC
66 CGAAGGCATTTGAAC
* * *
75189515 AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATAA-CCGGGCTATG-
1 AAGTTACTATATCCGGGTTAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-AATCCGGACTAAGA
75189577 TCCCGAAGGCATTTGAAC
64 T-CCGAAGGCATTTGAAC
*
75189595 GAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 AAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
75189625 TACGTGATTC
Statistics
Matches: 93, Mismatches: 11, Indels: 13
0.79 0.09 0.11
Matches are distributed among these distances:
79 17 0.18
80 74 0.80
81 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (80 bp):
AAGTTACTATATCCGGGTTAAGATCCGAAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATC
CGAAGGCATTTGAAC
Found at i:75193425 original size:22 final size:22
Alignment explanation
Indices: 75193396--75193445 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
75193386 TGGAGGCAAT
*
75193396 ACACACGCTCGTGTGTATATGGG
1 ACACACGCTCGTGTGCAT-TGGG
*
75193419 -CACACGCTTGTGTGCATTGGG
1 ACACACGCTCGTGTGCATTGGG
75193440 ACACAC
1 ACACAC
75193446 CTGTGTCCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (22 bp):
ACACACGCTCGTGTGCATTGGG
Found at i:75193450 original size:20 final size:22
Alignment explanation
Indices: 75193396--75193451 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
75193386 TGGAGGCAAT
*
75193396 ACACACGCTCGTGTGTATATGGG
1 ACACACGCT-GTGTGCATATGGG
75193419 -CACACGCTTGTGTGCAT-TGGG
1 ACACACGC-TGTGTGCATATGGG
75193440 ACACAC-CTGTGT
1 ACACACGCTGTGT
75193452 CCCTTACCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 5 0.17
21 5 0.17
22 19 0.63
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (22 bp):
ACACACGCTGTGTGCATATGGG
Found at i:75197530 original size:2 final size:2
Alignment explanation
Indices: 75197523--75197576 Score: 51
Period size: 2 Copynumber: 27.5 Consensus size: 2
75197513 TCCAATCATC
75197523 TA TA TA TA TA TA TA TA TA TA TA TA T- TCA TA T- TA -A GTA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA -TA TA TA
* *
75197564 TA AA CA TA TA TA T
1 TA TA TA TA TA TA T
75197577 TTATTTTCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
1 3 0.07
2 39 0.89
3 2 0.05
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:75199632 original size:23 final size:24
Alignment explanation
Indices: 75199475--75199625 Score: 105
Period size: 24 Copynumber: 6.3 Consensus size: 24
75199465 CTTGTAACGA
* *
75199475 GAAGCTCACACAGAGCCATTTCGG
1 GAAGCTCACAAAGAGCCATATCGG
* *
75199499 GAAGCTCACAAAGAG-CTTATCGA
1 GAAGCTCACAAAGAGCCATATCGG
* * * * *
75199522 GAAGCTTATC--TGGGCTATATAACAG
1 GAAGCTCA-CAAAGAGCCATAT--CGG
*
75199547 GAAGCTCA-TAAGAGCCATAATCGG
1 GAAGCTCACAAAGAGCCAT-ATCGG
* *
75199571 GAAGTTCACAAAGAACCATATCGG
1 GAAGCTCACAAAGAGCCATATCGG
* *
75199595 GAAACTCACAAAGAGCC-TATTGG
1 GAAGCTCACAAAGAGCCATATCGG
75199618 GAAGCTCA
1 GAAGCTCA
75199626 ATAAGAGTCA
Statistics
Matches: 95, Mismatches: 24, Indels: 17
0.70 0.18 0.12
Matches are distributed among these distances:
22 2 0.02
23 27 0.28
24 43 0.45
25 21 0.22
26 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCGG
Found at i:75202260 original size:412 final size:412
Alignment explanation
Indices: 75201496--75202325 Score: 1626
Period size: 412 Copynumber: 2.0 Consensus size: 412
75201486 TCTAAAAGAA
75201496 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
1 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
*
75201561 CGCCAGACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTTCCCAATATGATCCT
66 CGCCAGACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTGCCCAATATGATCCT
75201626 ATTTTATCTCATGGTATTCATTACATCTTCCTTCTTGAAAATTCAATTACTATTAGTAATCAAGT
131 ATTTTATCTCATGGTATTCATTACATCTTCCTTCTTGAAAATTCAATTACTATTAGTAATCAAGT
*
75201691 CATCTATCACAAAGGCAAACAACTCGTGGTCACGTTTACTTTCCATCTATCATGTAATGCCAATG
196 CATCTATCACAAAGGCAAACAACTCGTGGTCACATTTACTTTCCATCTATCATGTAATGCCAATG
75201756 AGAGGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTG
261 AGAGGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTG
75201821 TAGAAGTCGTATATCCAATGCACCAGCTTTTGATTCCTTATCTATTTTAAGTCAAGCTTTTACCT
326 TAGAAGTCGTATATCCAATGCACCAGCTTTTGATTCCTTATCTATTTTAAGTCAAGCTTTTACCT
75201886 ACATCAAACTATACGAGTCATG
391 ACATCAAACTATACGAGTCATG
75201908 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
1 ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
*
75201973 CGCTAGACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTGCCCAATATGATCCT
66 CGCCAGACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTGCCCAATATGATCCT
75202038 ATTTTATCTCATGGTATTCATTACATCTTCCTTCTTGAAAATTCAATTACTATTAGTAATCAAGT
131 ATTTTATCTCATGGTATTCATTACATCTTCCTTCTTGAAAATTCAATTACTATTAGTAATCAAGT
75202103 CATCTATCACAAAGGCAAACAACTCGTGGTCACATTTACTTTCCATCTATCATGTAATGCCAATG
196 CATCTATCACAAAGGCAAACAACTCGTGGTCACATTTACTTTCCATCTATCATGTAATGCCAATG
75202168 AGAGGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTG
261 AGAGGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTG
75202233 TAGAAGTCGTATATCCAATGCACCAGCTTTTGATTCCTTATCTATTTTAAGTCAAGCTTTTACCT
326 TAGAAGTCGTATATCCAATGCACCAGCTTTTGATTCCTTATCTATTTTAAGTCAAGCTTTTACCT
75202298 ACATCAAACTATACGAGTCATG
391 ACATCAAACTATACGAGTCATG
75202320 -CATACA
1 ACATACA
75202326 TAGTTCACCA
Statistics
Matches: 415, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
411 6 0.01
412 409 0.99
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (412 bp):
ACATACAGGTGGATTACACTTTGCCAAATAGATTATTTTACTAGAATACGCCTAAATTTCAAACC
CGCCAGACTTGGGATGTGACATCCTTAATCTCTTTGGGATAAATTCGTTTGCCCAATATGATCCT
ATTTTATCTCATGGTATTCATTACATCTTCCTTCTTGAAAATTCAATTACTATTAGTAATCAAGT
CATCTATCACAAAGGCAAACAACTCGTGGTCACATTTACTTTCCATCTATCATGTAATGCCAATG
AGAGGATATCATTTACCCATTAGCTGGGCTATGAATTTCACTATTGTGAATGATGTTACATATTG
TAGAAGTCGTATATCCAATGCACCAGCTTTTGATTCCTTATCTATTTTAAGTCAAGCTTTTACCT
ACATCAAACTATACGAGTCATG
Found at i:75213645 original size:21 final size:21
Alignment explanation
Indices: 75213612--75213651 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
75213602 TAAATAATGA
*
75213612 TTTAAAAACATAGATATTATC
1 TTTAAAAACATAGAAATTATC
* *
75213633 TTTAAAGATATAGAAATTA
1 TTTAAAAACATAGAAATTA
75213652 AATAAAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (21 bp):
TTTAAAAACATAGAAATTATC
Found at i:75221534 original size:45 final size:45
Alignment explanation
Indices: 75221423--75221596 Score: 152
Period size: 45 Copynumber: 3.9 Consensus size: 45
75221413 ATGCCTAAAG
* * * * ** *
75221423 ATGAGTAATACCATAGCTAAAAGATGCTATGACATCACCA-AACTG
1 ATGAGTAAAACCATAGCTGAAAGATGTTATGGCATCATGATAAC-A
* * * *
75221468 ATGTGTAAGACCACAGTTGAAAGATGTTATGGCATCATGATAACA
1 ATGAGTAAAACCATAGCTGAAAGATGTTATGGCATCATGATAACA
* * * * *
75221513 ATGAGTAAAACCATGGCTGAAAGATGCTATGGTATCATGGTAATA
1 ATGAGTAAAACCATAGCTGAAAGATGTTATGGCATCATGATAACA
* * * *
75221558 ATGAGTAAGACCATAGCTAAAAGACGTTATGACATCATG
1 ATGAGTAAAACCATAGCTGAAAGATGTTATGGCATCATG
75221597 TGAAAGCACA
Statistics
Matches: 102, Mismatches: 26, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
45 99 0.97
46 3 0.03
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (45 bp):
ATGAGTAAAACCATAGCTGAAAGATGTTATGGCATCATGATAACA
Found at i:75224079 original size:39 final size:39
Alignment explanation
Indices: 75223928--75224112 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
75223918 TTGAATGATG
* * *
75223928 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
75223968 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75224008 TCCGGACTAAGATCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
75224048 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
75224088 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
75224113 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 34 0.26
40 88 0.68
41 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75224082 original size:79 final size:78
Alignment explanation
Indices: 75223975--75224145 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 78
75223965 ATATCCGGAC
* *
75223975 TAAGATCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGTACG
1 TAAG-TCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGACTAAG-TCCCAAAGGCATTTGAACG
75224038 AGTTA-CTAAATCCGGGT
63 AG-TAGCTAAATCC-GGT
* *
75224055 TAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCAAAGGCATTTGAACGAGT
1 TAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGTCCCAAAGGCATTTGAACGAGT
*
75224120 AGCTATATCCGGT
66 AGCTAAATCCGGT
*
75224133 TAAACTCCGAAGG
1 T-AAGTCCGAAGG
75224146 TACGTGATTC
Statistics
Matches: 81, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
78 7 0.09
79 68 0.84
80 6 0.07
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGTCCCAAAGGCATTTGAACGAGT
AGCTAAATCCGGT
Found at i:75227785 original size:78 final size:80
Alignment explanation
Indices: 75227650--75227830 Score: 235
Period size: 78 Copynumber: 2.3 Consensus size: 80
75227640 TCGAATGATG
* *
75227650 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
75227715 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * **
75227729 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
75227791 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
75227808 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
75227831 TTGAACGAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
77 1 0.01
78 51 0.57
79 26 0.29
80 11 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:75227840 original size:40 final size:39
Alignment explanation
Indices: 75227651--75227833 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
75227641 CGAATGATGT
* *
75227651 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
75227690 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
75227731 CCGGGCTAAG-CCCGAAGGCA-TGGTGCGAGTTATTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75227768 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75227809 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75227834 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 70 0.57
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75235481 original size:39 final size:40
Alignment explanation
Indices: 75235387--75235570 Score: 218
Period size: 39 Copynumber: 4.6 Consensus size: 40
75235377 ATGATGTCCG
* * *
75235387 GGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGCTAAGATCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
75235426 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GG-CTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAATCC
75235466 GGCTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
75235505 GGGTAAGTTAATCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGCTAAG---ATCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
75235548 GGGCTATG-TCCCGAAGGCATTTG
1 -GGCTAAGATCCCGAAGGCATTTG
75235571 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 6, Indels: 17
0.85 0.04 0.11
Matches are distributed among these distances:
39 45 0.35
40 41 0.32
41 8 0.06
42 2 0.02
43 27 0.21
44 7 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
GGCTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:75235577 original size:40 final size:40
Alignment explanation
Indices: 75235383--75235570 Score: 217
Period size: 40 Copynumber: 4.7 Consensus size: 40
75235373 TCGAATGATG
* * *
75235383 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
75235423 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
75235463 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
75235502 TCCGGG-TAAGTTAATCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG----TCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75235546 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75235571 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 6, Indels: 18
0.85 0.04 0.11
Matches are distributed among these distances:
39 42 0.32
40 46 0.35
41 8 0.06
42 2 0.02
43 30 0.23
44 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75241360 original size:30 final size:29
Alignment explanation
Indices: 75241266--75241397 Score: 124
Period size: 29 Copynumber: 4.6 Consensus size: 29
75241256 TATACTGATT
** *
75241266 TCGCACACTTAGTGCCA-CGATTT-AAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
* ** *** *
75241293 CCGCACACACAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
75241322 TCGCACACTTAGTGCCATATTTTTTCCAGC
1 TCGCACACTTAGTGCCATA-TATTTCCAGC
*
75241352 TTGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
75241381 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
75241398 ATCTCGTCAC
Statistics
Matches: 83, Mismatches: 19, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
27 14 0.17
28 2 0.02
29 43 0.52
30 24 0.29
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATATTTCCAGC
Found at i:75243017 original size:48 final size:48
Alignment explanation
Indices: 75242911--75243077 Score: 264
Period size: 48 Copynumber: 3.4 Consensus size: 48
75242901 GGATGTCACA
*
75242911 CATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-GAC
1 CATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAG-C
*
75242961 CATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGC
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
75243009 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
* *
75243057 CATTCGGTTTTGCCACATATA
1 CATTCGGCTTTACCACATATA
75243078 TGCATGTTCA
Statistics
Matches: 111, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
48 82 0.74
49 1 0.01
50 28 0.25
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.37
Consensus pattern (48 bp):
CATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
Found at i:75243126 original size:47 final size:47
Alignment explanation
Indices: 75243047--75243240 Score: 253
Period size: 47 Copynumber: 4.1 Consensus size: 47
75243037 CATACATATT
* ** ** * *
75243047 TCACATTAGCCATTCGGTTTTGCCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* *
75243094 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
*
75243141 TCACATTGGTCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* * ***
75243188 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
75243235 TCACAT
1 TCACAT
75243241 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:75257130 original size:46 final size:46
Alignment explanation
Indices: 75257076--75257299 Score: 236
Period size: 46 Copynumber: 4.8 Consensus size: 46
75257066 AATATTTGGG
* *
75257076 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *
75257122 TATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * * * *
75257168 CGTCCGAACCCATTGAGTTGAGTCCAAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
*
75257215 CATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
75257261 CGTCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
75257300 GCGGGTTACA
Statistics
Matches: 145, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
45 1 0.01
46 110 0.76
47 33 0.23
48 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:75257246 original size:93 final size:93
Alignment explanation
Indices: 75257123--75257292 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
75257113 GGATGCGAAT
* * *
75257123 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACCCATTGAGTTG
1 ATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACCCATTGAGTTG
75257188 AGTCCAAGTTCGTGAAATGTAACTAGGC
66 AGTCCAAGTTCGTGAAATGTAACTAGGC
* * *
75257216 ATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTCATTGAGTTG
1 ATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACCCATTGAGTTG
*
75257281 AGTCCGAGTTCG
66 AGTCCAAGTTCG
75257293 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
ATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACCCATTGAGTTG
AGTCCAAGTTCGTGAAATGTAACTAGGC
Found at i:75261361 original size:46 final size:45
Alignment explanation
Indices: 75261303--75261478 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 45
75261293 TATTTGGGCA
*
75261303 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
75261349 TCCGCA-CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCG-AGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
**
75261396 TCCGAGCTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
75261442 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75261479 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 63 0.60
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:75261458 original size:93 final size:93
Alignment explanation
Indices: 75261299--75261471 Score: 278
Period size: 93 Copynumber: 1.9 Consensus size: 93
75261289 GGGATATTTG
*
75261299 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGCACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGCACTCGTTGAG
75261364 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* **
75261392 GGCATCCGAGCTCGTTGAGTTGAGTTTGAGTTCACTTATGGATGCGAACG-CCTG-AGCTCGTTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GCA-CTCGTTG
75261455 AGTTGAGTCCGAGTTCG
64 AGTTGAGTCCGAGTTCG
75261472 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGCACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:75274268 original size:22 final size:22
Alignment explanation
Indices: 75274240--75274282 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
75274230 TTTGCACTTA
75274240 AATTATTAATATACTAAATTTT
1 AATTATTAATATACTAAATTTT
**
75274262 AATTATTTTTATACTAAATTT
1 AATTATTAATATACTAAATTT
75274283 ACACAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (22 bp):
AATTATTAATATACTAAATTTT
Found at i:75278146 original size:26 final size:26
Alignment explanation
Indices: 75278117--75278267 Score: 88
Period size: 27 Copynumber: 5.7 Consensus size: 26
75278107 TTAGTTTACC
*
75278117 AAATTACTAAAATACCCCCAATTGTA
1 AAATTACCAAAATACCCCCAATTGTA
* ** *
75278143 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCC-AATTGTA
* * *
75278170 AAATTACCCAAATATCCTCAATTTGTA
1 AAATTACCAAAATACCCCCAA-TTGTA
* * * * *
75278197 AAATTACCGAAACACCCTCAGTTTGCA
1 AAATTACCAAAATACCCCCA-ATTGTA
** *
75278224 AAATTACTGAAATACCCTCGACA-TGTA
1 AAATTACCAAAATACCC-CCA-ATTGTA
* *
75278251 AAATTATCAAAGTACCC
1 AAATTACCAAAATACCC
75278268 TCGAATTACA
Statistics
Matches: 93, Mismatches: 28, Indels: 7
0.73 0.22 0.05
Matches are distributed among these distances:
26 17 0.18
27 75 0.81
28 1 0.01
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.26
Consensus pattern (26 bp):
AAATTACCAAAATACCCCCAATTGTA
Found at i:75278268 original size:54 final size:53
Alignment explanation
Indices: 75278109--75278287 Score: 155
Period size: 54 Copynumber: 3.3 Consensus size: 53
75278099 AGAATACTTT
* * * *
75278109 AGTTTACCAAATTACTAAAATACCCCCAATTGTAAAATTACCAAAGTACCCCC
1 AGTTTACAAAATTACTAAAATACCCTCAAATGTAAAATTACCAAAGTACCCTC
* * ** * * *
75278162 GGTTTATAAAATTACCCAAATATCCTCAATTTGTAAAATTACCGAAA-CACCCTC
1 AGTTTACAAAATTACTAAAATACCCTCAA-ATGTAAAATTACC-AAAGTACCCTC
* * * *
75278216 AGTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTAAAATACCCTC-AAATGTAAAATTACCAAAGTACCCTC
*
75278270 -GAATTACAAAAATTACTA
1 AG-TTTAC-AAAATTACTA
75278288 TTTTACCCTC
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
53 26 0.27
54 59 0.60
55 13 0.13
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.27
Consensus pattern (53 bp):
AGTTTACAAAATTACTAAAATACCCTCAAATGTAAAATTACCAAAGTACCCTC
Found at i:75278318 original size:27 final size:27
Alignment explanation
Indices: 75278263--75278592 Score: 394
Period size: 27 Copynumber: 12.2 Consensus size: 27
75278253 ATTATCAAAG
*
75278263 TACCCTCGAATTACAAAAATTACTATTT
1 TACCCTCGATTTAC-AAAATTACTATTT
*
75278291 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
75278318 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
75278345 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
75278372 TACCCTCGATTTATAGAAA-TATTATTT
1 TACCCTCGATTTACA-AAATTACTATTT
* * * *
75278399 TACCCTCAATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
*
75278426 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
75278453 TACCCTTGATTGACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
75278480 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
75278507 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
75278534 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
75278561 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
75278588 TACCC
1 TACCC
75278593 CTGGGGTGTT
Statistics
Matches: 264, Mismatches: 34, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.01
27 244 0.92
28 17 0.06
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:75278402 original size:81 final size:81
Alignment explanation
Indices: 75278263--75278592 Score: 462
Period size: 81 Copynumber: 4.1 Consensus size: 81
75278253 ATTATCAAAG
* *
75278263 TACCCTCGAATTACAAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTAC-AAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAAT
*
75278328 TTATAAAATTACCGTTT
65 TTATAAAATTACCATTT
* * * *
75278345 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAAATATTATTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
* * *
75278410 TATAGAATTATCGTTT
66 TATAAAATTACCATTT
* * * *
75278426 TACCCTCGATTTACAAAATTACTGTTTTACCCTTGATTGACAGAATTACTGTTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
* *
75278491 TACAAAATTACTATTT
66 TATAAAATTACCATTT
* * * * *
75278507 TACCCTCGATTTACAAAATTACTGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
75278572 TATAAAATTACCATTT
66 TATAAAATTACCATTT
75278588 TACCC
1 TACCC
75278593 CTGGGGTGTT
Statistics
Matches: 218, Mismatches: 30, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
81 205 0.94
82 13 0.06
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCAATT
TATAAAATTACCATTT
Found at i:75279067 original size:31 final size:31
Alignment explanation
Indices: 75279032--75279110 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
75279022 TTGCATTCAC
* * *
75279032 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* * *
75279063 ATTCTTATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
75279094 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
75279111 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:75279094 original size:6 final size:6
Alignment explanation
Indices: 75279032--75279119 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
75279022 TTGCATTCAC
* * * * *
75279032 ATTCTG ATTTTG ATTTTG -TTACCTG ATACTG ATTCTT ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
75279081 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
75279120 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:75280832 original size:50 final size:50
Alignment explanation
Indices: 75280717--75280820 Score: 140
Period size: 50 Copynumber: 2.1 Consensus size: 50
75280707 ACCAAACAGG
*
75280717 GGTCACACA--CCCGTGTAGCTTGGGACACGCCCGTTGGGCAGGCCATGT
1 GGTCACACACGCCCGTGTAGCTTGGGACAAGCCCGTTGGGCAGGCCATGT
* * * *
75280765 GGTCACATACGCCCGTGTGGCTTGGGACAAGCCTGTTGGGCAGGCCGTGGT
1 GGTCACACACGCCCGTGTAGCTTGGGACAAGCCCGTTGGGCAGGCCAT-GT
75280816 GGTCA
1 GGTCA
75280821 ACGCGGCCGT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
48 8 0.17
50 33 0.69
51 7 0.15
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (50 bp):
GGTCACACACGCCCGTGTAGCTTGGGACAAGCCCGTTGGGCAGGCCATGT
Found at i:75286778 original size:20 final size:20
Alignment explanation
Indices: 75286749--75286794 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
75286739 AGCACATGTA
* * *
75286749 TTCATAAAATTTTAGAATTT
1 TTCATTAAATTTTACAACTT
75286769 TTCATTAAATTTTACAACTT
1 TTCATTAAATTTTACAACTT
75286789 TTCATT
1 TTCATT
75286795 TTAATCCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (20 bp):
TTCATTAAATTTTACAACTT
Found at i:75288400 original size:45 final size:45
Alignment explanation
Indices: 75288302--75288618 Score: 444
Period size: 45 Copynumber: 7.1 Consensus size: 45
75288292 TTTTCTCAAA
* * * *
75288302 TCACTGGCATT-TCGCCTGCTAGGCTC-GAGGCCAG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATT
* * * *
75288344 TCACTGGCATTATAGCCTGTTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
* * *
75288389 TCACTGGCATTATAGCTTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
* *
75288434 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAATATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
*
75288479 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
* *
75288524 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
*
75288569 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
75288614 TCACC
1 TCACC
75288619 AGTTCTTTCC
Statistics
Matches: 253, Mismatches: 18, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
42 11 0.04
43 13 0.05
44 6 0.02
45 222 0.88
46 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
Found at i:75295745 original size:48 final size:48
Alignment explanation
Indices: 75295674--75296300 Score: 1053
Period size: 48 Copynumber: 13.0 Consensus size: 48
75295664 CAAGATAAAT
* *
75295674 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
75295722 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
75295770 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA-ATATGTATGAG
*
75295819 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
75295867 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
75295917 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
75295965 --ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
75296011 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
75296059 ATCTGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
75296107 ATATGTATATGTGGTAAAGCC-AATGGCTAATGTGAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA-ATATGTATGAG
*
75296155 ATATGTATATGTTGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
75296203 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
75296251 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
75296299 AT
1 AT
75296301 GTGTGTATAT
Statistics
Matches: 555, Mismatches: 17, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
46 45 0.08
47 15 0.03
48 385 0.69
49 64 0.12
50 46 0.08
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:75296493 original size:37 final size:37
Alignment explanation
Indices: 75296441--75296543 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
75296431 GGAAATATAT
75296441 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75296478 TTCGGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75296515 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75296544 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75297870 original size:40 final size:40
Alignment explanation
Indices: 75297815--75298129 Score: 517
Period size: 40 Copynumber: 7.9 Consensus size: 40
75297805 ATTAAGAGTT
75297815 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
75297855 ATATATCCGGGCTAAGTCACGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
75297895 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
75297935 ATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
75297975 ATATATCAGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
75298015 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
75298055 TTATATCCGAGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
75298095 ATATATCCGTGCTAA-ACCTCGAAG-GCATTCGTGCT
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
75298130 GGAATTATGA
Statistics
Matches: 257, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.05
40 244 0.95
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:75298229 original size:57 final size:57
Alignment explanation
Indices: 75298137--75298268 Score: 169
Period size: 57 Copynumber: 2.3 Consensus size: 57
75298127 GCTGGAATTA
* * * *
75298137 TGAGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGT-AG
1 TGAGGCACTGTGTGTGCGAGCTCTTCAACCAAGCACTATGTGTGCAAAATCAGTCAG
* * *
75298193 TTGAGGCACTATGTGTGCGAGTTCTTCAATCAAGCACTATGTGTGCAAAATCAGTCAG
1 -TGAGGCACTGTGTGTGCGAGCTCTTCAACCAAGCACTATGTGTGCAAAATCAGTCAG
*
75298251 TG-GGCACTGTGTATGCGA
1 TGAGGCACTGTGTGTGCGA
75298269 AGTGTGTTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 14 0.22
57 49 0.75
58 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCGAGCTCTTCAACCAAGCACTATGTGTGCAAAATCAGTCAG
Found at i:75302541 original size:50 final size:48
Alignment explanation
Indices: 75302335--75302926 Score: 914
Period size: 48 Copynumber: 12.1 Consensus size: 48
75302325 CAAGATAAAT
* * * *
75302335 ATATATATGTGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75302383 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75302431 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA-ATATGTATGAG
*
75302480 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
75302530 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75302578 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
75302628 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
75302678 ATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75302726 ATATGTATATGTGGTAAAGCAGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75302774 GTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
75302822 ATATGTATATGTGGTAAAGGTGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* * *
75302872 ATATGTATATGTGGTAAACCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75302920 ATATGTA
1 ATATGTA
75302927 ACACCCCGTA
Statistics
Matches: 510, Mismatches: 28, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
48 275 0.54
49 55 0.11
50 180 0.35
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75302617 original size:98 final size:97
Alignment explanation
Indices: 75302335--75302926 Score: 929
Period size: 98 Copynumber: 6.1 Consensus size: 97
75302325 CAAGATAAAT
* * * *
75302335 ATATATATGTGTGGTAAAGCTGAATGGCTAGTGTGAA-ATATGTATGAGATATGTATATGTGGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAATATATATATGAGATATGTATATGTGGTA
75302399 AAGCCGAATGGCTAATGTGAAATATGTATGAG
66 AAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75302431 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAATATATATATGAGATATGTATATGTGGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAATATATATATGAGATATGTATATGTGGTA
*
75302496 AAGCCGAATGGCTAATGTGAAATATATATATGAG
66 AAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
*
75302530 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA-ATATGTATGAGATATGTATATGTGGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAATATATATATGAGATATGTATATGTGGTA
*
75302594 AAGCCGAATGGCTAATGTGAAATATATATATGAG
66 AAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
* *
75302628 ATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATATATATGAGATATGTATATGTGGC
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AATATATATATGAGATATGTATATGTGGT
*
75302693 AAAGCCGAATGGCTAGTGTGAAATATGTATGAG
65 AAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
75302726 ATATGTATATGTGGTAAAGCAGAATGGCTAGTGTGAA-ATATGTATGAGGTATGTATATGTGGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAATATATATATGAGATATGTATATGTGGTA
75302790 AAGCCGAATGGCTAATGTGAAATATGTATGAG
66 AAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
75302822 ATATGTATATGTGGTAAAGGTGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AATATATATATGAGATATGTATATGTGGT
* * *
75302887 AAACCCAAATGGCTAGTGTGAAATATGTATGAG
65 AAAGCCGAATGGCTAATGTGAAATATGTATGAG
75302920 ATATGTA
1 ATATGTA
75302927 ACACCCCGTA
Statistics
Matches: 462, Mismatches: 27, Indels: 12
0.92 0.05 0.02
Matches are distributed among these distances:
96 120 0.26
97 49 0.11
98 200 0.43
99 50 0.11
100 43 0.09
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (97 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAATATATATATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75304329 original size:29 final size:29
Alignment explanation
Indices: 75304268--75304366 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
75304258 ACAGTAAGTC
75304268 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
75304296 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
75304325 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
75304353 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75304367 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:75305892 original size:37 final size:37
Alignment explanation
Indices: 75305842--75305923 Score: 164
Period size: 37 Copynumber: 2.2 Consensus size: 37
75305832 CTGTCACAAG
75305842 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
75305879 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
75305916 ATATGTAT
1 ATATGTAT
75305924 GAGATATGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (37 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
Found at i:75305950 original size:48 final size:48
Alignment explanation
Indices: 75305879--75306024 Score: 283
Period size: 48 Copynumber: 3.0 Consensus size: 48
75305869 CTAGTGTGAA
75305879 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
75305927 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
75305975 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
75306023 AT
1 AT
75306025 GTGTGTATAT
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 97 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:75309090 original size:37 final size:37
Alignment explanation
Indices: 75309040--75309142 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
75309030 TACAATATAT
75309040 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75309077 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75309114 TCCGGGCAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75309143 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75311138 original size:45 final size:45
Alignment explanation
Indices: 75311040--75311266 Score: 309
Period size: 45 Copynumber: 5.1 Consensus size: 45
75311030 TTTTCTCAAA
* * *
75311040 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
* * *
75311082 TCACTGGCATTATAGCCTGTTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
75311127 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
75311172 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* * *
75311217 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
75311262 TCACC
1 TCACC
75311267 AATTCTTTCC
Statistics
Matches: 169, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
42 10 0.06
43 13 0.08
44 7 0.04
45 138 0.82
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:75313845 original size:28 final size:28
Alignment explanation
Indices: 75313813--75313911 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
75313803 GCAATAAGCC
*
75313813 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
75313841 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
75313869 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
75313898 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75313912 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:75321516 original size:28 final size:28
Alignment explanation
Indices: 75321484--75321582 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
75321474 GCAATAAGCC
*
75321484 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
75321512 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
75321540 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
75321569 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75321583 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:75328659 original size:17 final size:16
Alignment explanation
Indices: 75328628--75328662 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
75328618 GGAGAAATTG
*
75328628 AATGATGATTGTATGA
1 AATGATGAATGTATGA
75328644 AATGATTGAATGTATGA
1 AATGA-TGAATGTATGA
75328661 AA
1 AA
75328663 AAAGTACGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (16 bp):
AATGATGAATGTATGA
Found at i:75329172 original size:18 final size:17
Alignment explanation
Indices: 75329133--75329199 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 17
75329123 CAAATTGACA
*
75329133 AACCCTTATATGCATGCT
1 AACCCTTATATGTATG-T
75329151 AACCCTTATATGTATGT
1 AACCCTTATATGTATGT
* * *
75329168 GAACCTTTATGTATATGT
1 -AACCCTTATATGTATGT
*
75329186 AAACCCTAATATGT
1 -AACCCTTATATGT
75329200 TTTGGAGATA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
17 1 0.03
18 38 0.97
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (17 bp):
AACCCTTATATGTATGT
Found at i:75334058 original size:27 final size:28
Alignment explanation
Indices: 75334001--75334070 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
75333991 AAATTTGTAC
**
75334001 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
75334029 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
75334056 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75334071 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:75334079 original size:27 final size:27
Alignment explanation
Indices: 75334001--75334082 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
75333991 AAATTTGTAC
* *
75334001 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
75334029 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
75334056 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
75334083 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:75336720 original size:20 final size:20
Alignment explanation
Indices: 75336695--75336732 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
75336685 TAACATTCTA
75336695 ATGTCTTTAAGTTTTGCACC
1 ATGTCTTTAAGTTTTGCACC
75336715 ATGTCTTTAAGTTTTGCA
1 ATGTCTTTAAGTTTTGCA
75336733 ATAGGTGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (20 bp):
ATGTCTTTAAGTTTTGCACC
Found at i:75336949 original size:22 final size:24
Alignment explanation
Indices: 75336917--75336988 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 24
75336907 TTTCAAACTA
75336917 TGATATCAATATGATTCAACTCAT
1 TGATATCAATATGATTCAACTCAT
* *
75336941 TG-TAT-AATAGTATATTCTAA-T-AA
1 TGATATCAATA-T-GATTC-AACTCAT
75336964 TGATATCAATATGATTCAACTCAT
1 TGATATCAATATGATTCAACTCAT
75336988 T
1 T
75336989 ATAGATTGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 14
0.67 0.07 0.25
Matches are distributed among these distances:
22 6 0.16
23 12 0.32
24 13 0.35
25 6 0.16
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.40
Consensus pattern (24 bp):
TGATATCAATATGATTCAACTCAT
Found at i:75345757 original size:27 final size:27
Alignment explanation
Indices: 75345717--75345792 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
75345707 TTATCTGATA
75345717 GTAATACCCCTGTAGGGTAAAATGACC
1 GTAATACCCCTGTAGGGTAAAATGACC
* * *
75345744 GTAATACCCTTGTAGGATTAAATGACC
1 GTAATACCCCTGTAGGGTAAAATGACC
*
75345771 GTAATACCCCTGTATGGTAAAA
1 GTAATACCCCTGTAGGGTAAAA
75345793 AGACTATTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAATACCCCTGTAGGGTAAAATGACC
Found at i:75352870 original size:52 final size:51
Alignment explanation
Indices: 75352811--75353002 Score: 255
Period size: 52 Copynumber: 3.7 Consensus size: 51
75352801 TGGCATTGTG
*
75352811 CTAAGTGAAATAAGAACATGGC-A-T-CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGACCATGGCAAGTGCTAAGTGAAATAAGTCCATGGC-A--T
*
75352862 GCTAAGTGAAATAATACCATGGCAATGTGCTAAGTGAAATAAGTCCATGGCAT
1 -CTAAGTGAAATAAGACCATGGCAA-GTGCTAAGTGAAATAAGTCCATGGCAT
*
75352915 CTAAGTGAAATAAGTCCATGGCAATGTGCTAAGTGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGACCATGGCAA-GTGCTAAGTGAAATAAGTCCATGGCAT
* *
75352967 CTAAGTGAAATAAGTCCATGGCATGGTGCTAAGTGA
1 CTAAGTGAAATAAGACCATGGCA-AGTGCTAAGTGA
75353003 GAAATTTCCC
Statistics
Matches: 130, Mismatches: 5, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
52 104 0.80
53 2 0.02
55 2 0.02
56 22 0.17
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (51 bp):
CTAAGTGAAATAAGACCATGGCAAGTGCTAAGTGAAATAAGTCCATGGCAT
Done.