Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 263 of 427
Found at i:75752406 original size:27 final size:28
Alignment explanation
Indices: 75752344--75752413 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
75752334 AAATTTGTAC
75752344 AGCACTAAGTGTGCGAGTTTGATCACAT
1 AGCACTAAGTGTGCGAGTTTGATCACAT
* *
75752372 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCACAT
* *
75752399 GGCGCTAAGTGTGCG
1 AGCACTAAGTGTGCG
75752414 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCACAT
Found at i:75754667 original size:40 final size:40
Alignment explanation
Indices: 75754622--75754788 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
75754612 CGGAATATAA
75754622 CCGGATATAATCAC-ATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTA-GCACAAATGCCTTCGGGTCTTAGC
* * * *
75754662 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
75754702 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
75754742 CCGGATATAATTTCCAGCATAATTGTCTT-GGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75754781 CCGGATAT
1 CCGGATAT
75754789 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 16 0.15
40 89 0.85
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75756882 original size:40 final size:39
Alignment explanation
Indices: 75756837--75756966 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
75756827 CGGAATATAA
75756837 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
75756877 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
75756917 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
75756957 CCGGATATAA
1 CCGGATATAA
75756967 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:75756981 original size:40 final size:40
Alignment explanation
Indices: 75756853--75757004 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
75756843 ATAACCATGT
* * *
75756853 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
75756893 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75756933 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
75756973 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
75757005 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:75756987 original size:80 final size:80
Alignment explanation
Indices: 75756853--75757002 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
75756843 ATAACCATGT
*
75756853 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
75756917 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
75756933 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
75756996 CCCGGAT
64 CCCGGAT
75757003 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:75765628 original size:26 final size:28
Alignment explanation
Indices: 75765563--75765631 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
75765553 AAATTTGTAC
75765563 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
75765591 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
75765618 -GCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
75765632 GACTCACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 14 0.35
27 9 0.22
28 17 0.43
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:75765642 original size:26 final size:26
Alignment explanation
Indices: 75765564--75765645 Score: 69
Period size: 26 Copynumber: 3.1 Consensus size: 26
75765554 AATTTGTACA
* *
75765564 GCACTAAGTGTGCGAGTTTGA-TCATAT
1 GCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
75765591 AGCACTAAGTGTGCGAGTTGATTATAT
1 -GCACTAAGTGTGCGAGCTCACTATAT
75765618 GCACTAAGTGTGCG-GACTCACTATAT
1 GCACTAAGTGTGCGAG-CTCACTATAT
75765644 GC
1 GC
75765646 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
25 1 0.02
26 23 0.47
27 8 0.16
28 17 0.35
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGAGCTCACTATAT
Found at i:75766601 original size:35 final size:35
Alignment explanation
Indices: 75766555--75766624 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
75766545 AGGTATTGTG
75766555 AAACAGGGCCAGAACGGTTTCTGGATTCCCTGTTC
1 AAACAGGGCCAGAACGGTTTCTGGATTCCCTGTTC
75766590 AAACAGGGCCAGAACGGTTTCTGGATTCCCTGTTC
1 AAACAGGGCCAGAACGGTTTCTGGATTCCCTGTTC
75766625 CGACTTTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (35 bp):
AAACAGGGCCAGAACGGTTTCTGGATTCCCTGTTC
Found at i:75768521 original size:6 final size:6
Alignment explanation
Indices: 75768491--75768546 Score: 69
Period size: 6 Copynumber: 9.3 Consensus size: 6
75768481 AAGAAACATT
* * *
75768491 ATCAGA A-CTAGA ATCAAA ATGAGA ATTAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
75768539 ATCAGA AT
1 ATCAGA AT
75768547 GCAGCCCAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
5 1 0.02
6 41 0.95
7 1 0.02
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:75768749 original size:27 final size:27
Alignment explanation
Indices: 75768708--75768822 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
75768698 AGCATGGCTG
* * *
75768708 CCAGAACTGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
75768734 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
* *
75768761 CCAGAACAGATATTTGTGCCATAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
*
75768788 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
75768816 CCAGAAC
1 CCAGAAC
75768823 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 12 0.15
27 42 0.52
28 26 0.32
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:75768798 original size:54 final size:54
Alignment explanation
Indices: 75768708--75768822 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
75768698 AGCATGGCTG
* * *
75768708 CCAGAACTGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCA
* * *
75768761 CCAGAACAGATATTTGTGCCATAGCCACCAGAAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCA
75768816 CCAGAAC
1 CCAGAAC
75768823 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 11 0.20
54 23 0.43
55 20 0.37
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (54 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:75768805 original size:28 final size:28
Alignment explanation
Indices: 75768732--75768821 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
75768722 GTGACAGAGT
* *
75768732 CACCAGATACAGATA-TTGTGGCAGAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
75768759 CACCAG-AACAGATATTTGTGCCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
75768786 CACCAGAAACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
75768814 CACCAGAA
1 CACCAGAA
75768822 CGCTTCCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 7 0.12
27 22 0.39
28 28 0.49
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:75769158 original size:81 final size:81
Alignment explanation
Indices: 75769018--75769347 Score: 466
Period size: 81 Copynumber: 4.1 Consensus size: 81
75769008 GGGCAAAATG
* * * * * *
75769018 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
75769083 CTACAAGGGTATTTCA
66 CTACAAGGGTATTTCA
* *
75769099 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTGATATTTCTACA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
* *
75769164 ATACAAGGGTATTTCG
66 CTACAAGGGTATTTCA
*
75769180 GTAATTCTACCCTAC-AGGAGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTAC
1 GTAATTCTACCCTACAAGG-GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
75769244 CCTACAAGGGTATTTCA
65 CCTACAAGGGTATTTCA
* * * * *
75769261 GTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCAATAATTT-TGC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAT-ATTTCTAC
*
75769325 CCTACAGGGGTATTTCA
65 CCTACAAGGGTATTTCA
*
75769342 ATAATT
1 GTAATT
75769348 TTGTAAATCA
Statistics
Matches: 223, Mismatches: 23, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
80 3 0.01
81 214 0.96
82 6 0.03
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
CTACAAGGGTATTTCA
Found at i:75769350 original size:27 final size:27
Alignment explanation
Indices: 75769018--75769347 Score: 410
Period size: 27 Copynumber: 12.2 Consensus size: 27
75769008 GGGCAAAATG
* * * * *
75769018 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75769045 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75769072 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75769099 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75769126 GTAATTCTACCCTACAGGGGTATTT-T
1 GTAATTCTACCCTACAGGGGTATTTCA
* ** * *
75769152 GATATTTCTACAATACAAGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
75769180 GTAATTCTACCCTACAGGAGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75769207 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
75769234 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75769261 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75769288 ATAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
75769315 ATAATTTTGCCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
75769342 ATAATT
1 GTAATT
75769348 TTGTAAATCA
Statistics
Matches: 266, Mismatches: 35, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 264 0.99
28 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:75769362 original size:27 final size:27
Alignment explanation
Indices: 75769278--75769363 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
75769268 TACCCTATAG
* ** *
75769278 GGGTATTTCAATAATTCT-ACCCTACAG
1 GGGTATTTCAATAATTTTGA-AATACAA
*** *
75769305 GGGTATTTCAATAATTTTGCCCTACAG
1 GGGTATTTCAATAATTTTGAAATACAA
75769332 GGGTATTTCAATAATTTTGTAAAT-CAA
1 GGGTATTTCAATAATTTTG-AAATACAA
75769359 GGGTA
1 GGGTA
75769364 AAACGGTAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTGAAATACAA
Found at i:75772051 original size:49 final size:49
Alignment explanation
Indices: 75771971--75772143 Score: 161
Period size: 49 Copynumber: 3.6 Consensus size: 49
75771961 TGTTGTGTGT
* * * * *
75771971 CAGTGTAAGACCTGTCTCGGATATGGTATCGATATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATAGATGAAAGC
* *
75772020 CAGTGTAAGACCTGTCTAGGACATGGCATCGACCTCGATATATGAAAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATAGATGAAAGC
* * * ** * ** **
75772069 CAGTGTAAGACATGCCTGGGACACAGCATCGACTTTAAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATAGATGAAAGC
*
75772116 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTAGGACATGGC
75772144 GTCAGCATCT
Statistics
Matches: 101, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
47 16 0.16
48 12 0.12
49 73 0.72
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACATCGATAGATGAAAGC
Found at i:75775716 original size:30 final size:30
Alignment explanation
Indices: 75775680--75775780 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
75775670 GACAAGATTG
* * *
75775680 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75775710 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
75775738 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
75775767 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75775781 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:75775792 original size:29 final size:28
Alignment explanation
Indices: 75775709--75775784 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
75775699 AAAATTGTAC
* *
75775709 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
75775737 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
75775766 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
75775785 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:75779074 original size:10 final size:9
Alignment explanation
Indices: 75779048--75779073 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
75779038 AAGCTTAAAC
75779048 TCAAAAAAT
1 TCAAAAAAT
75779057 TCAAAAAAT
1 TCAAAAAAT
75779066 TCAAAAAA
1 TCAAAAAA
75779074 AATTTCATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
TCAAAAAAT
Found at i:75779337 original size:16 final size:17
Alignment explanation
Indices: 75779316--75779354 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
75779306 TGTGTAACGC
75779316 CCCAAAAAT-CTCGAAA-
1 CCCAAAAATCCT-GAAAT
75779332 CCCAAAAATCCTGAAAT
1 CCCAAAAATCCTGAAAT
75779349 CCCAAA
1 CCCAAA
75779355 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCCTGAAAT
Found at i:75780130 original size:65 final size:65
Alignment explanation
Indices: 75780047--75780176 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
75780037 GTTAAAAAAC
*
75780047 TCAAAATCCAATTTCATAAATTTTCTATGAAACTAGACTCATATTTCTACTTACTAATTTTTTTT
1 TCAAAATCCAATTCCATAAATTTTCTATGAAACTAGACTCATATTTCTACTTACTAATTTTTTTT
75780112 TCAAAATCCAATTCCATAAATTTTCTATGAAACTAGACTCATATTTCTACTTACTAATTTTTTTT
1 TCAAAATCCAATTCCATAAATTTTCTATGAAACTAGACTCATATTTCTACTTACTAATTTTTTTT
75780177 CTAGAATTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.34, C:0.18, G:0.03, T:0.45
Consensus pattern (65 bp):
TCAAAATCCAATTCCATAAATTTTCTATGAAACTAGACTCATATTTCTACTTACTAATTTTTTTT
Found at i:75780921 original size:49 final size:49
Alignment explanation
Indices: 75780849--75781035 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
75780839 GCCGAAGCTA
* * *
75780849 TCTGGTACGCATAGTAGCCTGCACTTAGTACTATACATGTGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
* *
75780898 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAG
** * *
75780948 TCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
* * *
75780996 TTTTTGGGTACGCATAATAGCCTGCACTTAGTACTACACA
1 --TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACA
75781036 TGCGACCTCA
Statistics
Matches: 117, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 38 0.32
50 43 0.37
51 33 0.28
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG
Found at i:75780973 original size:99 final size:100
Alignment explanation
Indices: 75780860--75781046 Score: 261
Period size: 101 Copynumber: 1.9 Consensus size: 100
75780850 CTGGTACGCA
* * * *
75780860 TAGTAGCCTGCACTTAGTACTATACATGTGACCAACAG-TCT-GGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-ACAGTTCTGGGTACACATAATAGCCTGCACT
*
75780923 TAGTACTACACACGTGACCTCACCATCTAATACACG
65 TAGTACTACACACGCGACCTCACCATCTAATACACG
* * *
75780959 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCATAATAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCACAG-TTCTGGGTACACATAATAGCCTGCACT
*
75781024 TAGTACTACACATGCGACCTCAC
65 TAGTACTACACACGCGACCTCAC
75781047 AATAGATCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.39
100 2 0.03
101 40 0.53
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCACAGTTCTGGGTACACATAATAGCCTGCACTT
AGTACTACACACGCGACCTCACCATCTAATACACG
Found at i:75786680 original size:29 final size:29
Alignment explanation
Indices: 75786636--75786736 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
75786626 GAATGTGACC
*
75786636 GGGCCTAACGGGCCATATAAATATGATTT
1 GGGCCTAATGGGCCATATAAATATGATTT
* * **
75786665 GTGCCTAATGGGCCATATACAGGTGATTT
1 GGGCCTAATGGGCCATATAAATATGATTT
* *
75786694 GGGCCTAATAGGCCATATGAATATGA-TT
1 GGGCCTAATGGGCCATATAAATATGATTT
*
75786722 GGGCTTAATGGGCCA
1 GGGCCTAATGGGCCA
75786737 GATACAGGTA
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 15 0.25
29 44 0.75
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATAAATATGATTT
Found at i:75790828 original size:68 final size:64
Alignment explanation
Indices: 75790711--75790963 Score: 163
Period size: 68 Copynumber: 3.9 Consensus size: 64
75790701 ATACAGATAG
* * * * *
75790711 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACAAGACAT
1 TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-
75790776 TA
63 TA
* * * **
75790778 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGT-GTACAAGAGAGCTACGACAT
75790842 A
64 A
* * * * * *
75790843 TATGTAGCTAGGTCGCATACG-TGGTTCCAGGTGAAGGACACCATGTAG-ACAAGAGAGCTACGA
1 TATGTAGCTAGGTCGCAT-GGATGATACTAAGT---GCACACCATGT-GTACAAGAGAGCTACGA
*
75790906 GATA
61 CATA
* * * * * * **
75790910 AAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAAGAGAGC
75790964 CGAACTATAT
Statistics
Matches: 151, Mismatches: 27, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 24 0.16
65 5 0.03
66 21 0.14
67 33 0.22
68 47 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGATGATACTAAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:75794591 original size:29 final size:29
Alignment explanation
Indices: 75794529--75794637 Score: 118
Period size: 29 Copynumber: 3.9 Consensus size: 29
75794519 CATGATTATG
*
75794529 AATGTGA-TTGGGCCTAACGGG-CATATA
1 AATGTGATTTGGGCATAACGGGCCATATA
* *
75794556 AATGTGATTTGGGCGTAATGGGCCATATA
1 AATGTGATTTGGGCATAACGGGCCATATA
* *
75794585 CAA-GTGATTTGGGCATAAGGGGCCATATG
1 -AATGTGATTTGGGCATAACGGGCCATATA
* *
75794614 AATATGA-TTGGGCTTAACGGGCCA
1 AATGTGATTTGGGCATAACGGGCCA
75794638 GATACAGGTA
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
27 7 0.10
28 29 0.41
29 32 0.46
30 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
AATGTGATTTGGGCATAACGGGCCATATA
Found at i:75794625 original size:57 final size:56
Alignment explanation
Indices: 75794532--75794643 Score: 136
Period size: 57 Copynumber: 2.0 Consensus size: 56
75794522 GATTATGAAT
* * * *
75794532 GTGATTGGGCCTAACGGGCATATAAATGTGATTTGGGCGTAATGGGCCATATACAA
1 GTGATTGGGCATAACGGGCATATAAATATGATTTGGGCGTAACGGGCCAGATACAA
* * *
75794588 GTGATTTGGGCATAAGGGGCCATATGAATATGA-TTGGGCTTAACGGGCCAGATACA
1 GTGA-TTGGGCATAACGGG-CATATAAATATGATTTGGGCGTAACGGGCCAGATACA
75794644 GGTATGTGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
56 4 0.09
57 32 0.68
58 11 0.23
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (56 bp):
GTGATTGGGCATAACGGGCATATAAATATGATTTGGGCGTAACGGGCCAGATACAA
Found at i:75798988 original size:27 final size:27
Alignment explanation
Indices: 75798967--75799416 Score: 424
Period size: 27 Copynumber: 16.7 Consensus size: 27
75798957 AAGGGTATTT
*
75798967 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * *
75798994 CAGTAATTCTGTGAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
75799021 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * **
75799048 TGGTAATTATGTAAATTAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
75799075 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
75799102 TAGTAATTCTGTAAA-CTGAAGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
75799129 CGGTAATTCTGTAAATTGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
75799156 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
75799183 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
75799210 CAGTAATTTTGTAAATCAAGAGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
75799237 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
75799264 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
75799291 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
* * *
75799318 -CGATAATTTTGTAAATTGAGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
** * **
75799345 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
75799372 CAGTAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
75799399 CGGTAATTCTGTAAATCG
1 TAGTAATTCTGTAAATCG
75799417 GGAGTACTTT
Statistics
Matches: 356, Mismatches: 57, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.01
27 348 0.98
28 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:75799433 original size:54 final size:53
Alignment explanation
Indices: 75798969--75799416 Score: 477
Period size: 54 Copynumber: 8.3 Consensus size: 53
75798959 GGGTATTTTA
* * * * * **
75798969 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTGAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* * *
75799023 GTAATTCTATAAATCGAGGGTAAAATGGTAATTATGTAAATTAAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGTAAAACG
** *
75799077 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGTAAAACG
* * * **
75799131 GTAATTCTGTAAATTGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* * * * *
75799185 GTAATTCTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGAGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* * **
75799239 ATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAAT-GAGGGTAAAACG
* * *
75799293 GTAATTCTGTAAA-CTGAGGGTAAAACGATAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAA-TGAGGGTAAAACG
* * * *
75799347 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA-TGAGGGTAAAACG
*
75799401 GTAATTCTGTAAATCG
1 GTAATTCTATAAATCG
75799417 GGAGTACTTT
Statistics
Matches: 337, Mismatches: 52, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.01
54 332 0.99
55 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (53 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATGAGGGTAAAACG
Found at i:75799439 original size:81 final size:81
Alignment explanation
Indices: 75798968--75799416 Score: 528
Period size: 81 Copynumber: 5.5 Consensus size: 81
75798958 AGGGTATTTT
* * * * **
75798968 AGTAATTTTGTAAA-TCGAGGGTAAAACAGTAATTCTGTGAATCAAGGGTAAAATAGTAATTCTA
1 AGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTA
*
75799032 TAAATCGAGGGTAAAAT
65 TAAATCGAGGGTAAAAC
* * * * * ** *
75799049 GGTAATTATGTAAATTAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
*
75799114 AAA-CTGAAGGTAAAAC
66 AAATC-GAGGGTAAAAC
* * * **
75799130 GGTAATTCTGTAAATTGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
75799195 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * **
75799211 AGTAATTTTGTAAA-TCAAGAGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCT
1 AGTAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCT
* *
75799274 GTAAATCGAGGGTAAAAT
64 ATAAATCGAGGGTAAAAC
* * * * *
75799292 AGTAATTCTGTAAACTGAGGGTAAAACGATAATTTTGTAAATTGAGGGTAAAACGGTAATTTTAC
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
75799357 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
*
75799373 AGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
75799417 GGAGTACTTT
Statistics
Matches: 318, Mismatches: 43, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.01
81 312 0.98
82 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (81 bp):
AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
AAATCGAGGGTAAAAC
Found at i:75802617 original size:42 final size:42
Alignment explanation
Indices: 75802552--75802644 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
75802542 TGTCGTTTAC
* *
75802552 TTGATGCCATAGTCCAACTATGGTCTTACACGAAGTCCCATA
1 TTGATGCCATAGTCCAACTATGGTCTTACACGAAATCACATA
75802594 TTGATGCCAT-GTCCCAGAC-ATGGTCTTACACGAAATCACATA
1 TTGATGCCATAGT-CCA-ACTATGGTCTTACACGAAATCACATA
*
75802636 TCGATGCCA
1 TTGATGCCA
75802645 ATGCCATATC
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
41 2 0.04
42 42 0.91
43 2 0.04
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
TTGATGCCATAGTCCAACTATGGTCTTACACGAAATCACATA
Found at i:75802668 original size:48 final size:47
Alignment explanation
Indices: 75802597--75802872 Score: 372
Period size: 48 Copynumber: 5.8 Consensus size: 47
75802587 TCCCATATTG
*
75802597 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACATATCGATGCCA
* * * *
75802645 ATGCCATATCCCATATATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACATATCGATGCCA
* * *
75802693 ATGCCATGTCCCAGACATGGTCTTACTGGGATCACATATCGATGTCA
1 ATGCCATGTCCCAGACATGGTCTTACAGAGATCACATATCGATGCCA
* * *
75802740 ATGCCATGTCCCAGACATGGTCTTATATAGGATCACATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGA-GATCACATATCGATGCCA
** *
75802788 ATGTTATGTCCCAGACATGGTCTTACATAGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACAGA-GATCACATATCGATGCCA
*
75802836 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAGATCACA
75802873 AGACCATAGC
Statistics
Matches: 201, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 44 0.22
48 157 0.78
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACAGAGATCACATATCGATGCCA
Found at i:75802855 original size:143 final size:144
Alignment explanation
Indices: 75802597--75802872 Score: 439
Period size: 143 Copynumber: 1.9 Consensus size: 144
75802587 TCCCATATTG
* * * *
75802597 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCGATGCCAATGCCATATCCCATATA
1 ATGCCATGTCCCAGACATGGTCTTACAAGAAATCACATATCAATGCCAATGCCATATCCCAGACA
*
75802662 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATC
66 TGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
75802726 ACATATCGATGTCA
131 ACATATCGATGTCA
* * ** *
75802740 ATGCCATGTCCCAGACATGGTCTTATATAG-GATCACATATCAATGCCAATGTTATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACA-AGAAATCACATATCAATGCCAATGCCATATCCCAGAC
75802804 ATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
65 ATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
75802869 CACA
130 CACA
75802873 AGACCATAGC
Statistics
Matches: 121, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
143 110 0.91
144 11 0.09
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACAAGAAATCACATATCAATGCCAATGCCATATCCCAGACA
TGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
ACATATCGATGTCA
Found at i:75803876 original size:20 final size:20
Alignment explanation
Indices: 75803851--75803894 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
75803841 AACAGAGGTC
* *
75803851 ACACGCCCATGTGCTTTGGG
1 ACACGCCCATATGCTTTAGG
*
75803871 ACACGCCCGTATGCTTTAGG
1 ACACGCCCATATGCTTTAGG
75803891 ACAC
1 ACAC
75803895 ACTCGTGTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.32, G:0.25, T:0.23
Consensus pattern (20 bp):
ACACGCCCATATGCTTTAGG
Found at i:75805615 original size:43 final size:43
Alignment explanation
Indices: 75805427--75805621 Score: 202
Period size: 43 Copynumber: 4.6 Consensus size: 43
75805417 TCGTACAATA
* * *
75805427 CCAATGTCCTAGACGTGGTCTTACATGTAAT-CAAATATCGATA
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCCCAA-ATCGATG
* * * ** *
75805470 CCACTATCCCAGCCAG-GGTCTTACA-CAAAT--CAGATACGATG
1 CCAATGTCCCAGAC-GTGGTCTTACATGTAATCCCAAAT-CGATG
*
75805511 CCAATGTCCCAGACATGGTCTTACATGTAATCCCAAATCGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCCCAAATCGATG
* * *
75805554 CCAATGTCCCAGATGTGGTCTTACATGTAATCTCAAATTGATG
1 CCAATGTCCCAGACGTGGTCTTACATGTAATCCCAAATCGATG
*
75805597 CCAATGTCCCAAACGTGGTCTTACA
1 CCAATGTCCCAGACGTGGTCTTACA
75805622 CAAAATCACA
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
40 2 0.02
41 25 0.20
42 6 0.05
43 86 0.69
44 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
CCAATGTCCCAGACGTGGTCTTACATGTAATCCCAAATCGATG
Found at i:75813510 original size:33 final size:33
Alignment explanation
Indices: 75813470--75813535 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
75813460 AAATCACTCC
75813470 ATATACACATATTTAGGGCATTTCACAAATTAT
1 ATATACACATATTTAGGGCATTTCACAAATTAT
75813503 ATATACACATATTTAGGGCATTTCACAAATTAT
1 ATATACACATATTTAGGGCATTTCACAAATTAT
75813536 CTCTCATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.36
Consensus pattern (33 bp):
ATATACACATATTTAGGGCATTTCACAAATTAT
Found at i:75820303 original size:25 final size:25
Alignment explanation
Indices: 75820272--75820322 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
75820262 CAAACTTTCC
75820272 AACAATTTCACATTCATGAAAAACA
1 AACAATTTCACATTCATGAAAAACA
75820297 AACAATTTCACATTCATGAAAAACA
1 AACAATTTCACATTCATGAAAAACA
75820322 A
1 A
75820323 TCTTGCATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.53, C:0.20, G:0.04, T:0.24
Consensus pattern (25 bp):
AACAATTTCACATTCATGAAAAACA
Found at i:75820954 original size:47 final size:49
Alignment explanation
Indices: 75820881--75821056 Score: 164
Period size: 50 Copynumber: 3.6 Consensus size: 49
75820871 TATAATGCTA
* * *
75820881 ATGCCATGTCCCCGACATGGTCTTACACTGGCTCATC-CATCAAGTC-G
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGGCTG
* * *
75820928 ATGCCATGTCCCAGGCATGGTTTTACACTGACT-ATCAAAATCAAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCAAGGCTG
* * * * *
75820977 ACGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACATATC-TGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-A-ATCAAG-GCTG
* *
75821027 ATGCCATGTCCCAAACATGGTCTAACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
75821057 ACACATCTCG
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
46 3 0.03
47 29 0.28
48 8 0.08
49 32 0.30
50 33 0.31
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGGCTG
Found at i:75821111 original size:46 final size:46
Alignment explanation
Indices: 75821059--75821191 Score: 118
Period size: 41 Copynumber: 2.9 Consensus size: 46
75821049 TAACACTGAC
*
75821059 ACATCTCGTAGAAGATGCATGTCCGAGACATGTCTTACACTAGCT-T
1 ACATCTCGAAGAAGATGCATGTCC-AGACATGTCTTACACTAGCTCT
** *
75821105 ACATCTCGAAGCTGATGCAT-T---GACATGTCTTATACTAGCTCT
1 ACATCTCGAAGAAGATGCATGTCCAGACATGTCTTACACTAGCTCT
* *
75821147 -CCTCTC-AATGACGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ACATCTCGAA-GAAGATG-CATGT-CCAGACAT-GTCTTACACTAGC
75821192 ACTCATAATG
Statistics
Matches: 70, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
40 2 0.03
41 28 0.40
42 4 0.06
43 1 0.01
45 1 0.01
46 17 0.24
47 5 0.07
48 12 0.17
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (46 bp):
ACATCTCGAAGAAGATGCATGTCCAGACATGTCTTACACTAGCTCT
Found at i:75828250 original size:20 final size:21
Alignment explanation
Indices: 75828215--75828253 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
75828205 ATAATAGTTT
75828215 AATAATAAAAACAAAGAAATA
1 AATAATAAAAACAAAGAAATA
*
75828236 AATAA-AAAAAGAAAGAAA
1 AATAATAAAAACAAAGAAA
75828254 GGGAGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.10
Consensus pattern (21 bp):
AATAATAAAAACAAAGAAATA
Found at i:75835621 original size:18 final size:18
Alignment explanation
Indices: 75835564--75835640 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 18
75835554 GACTGTCTGC
* *
75835564 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTAT
* *
75835582 TACAGAATAAACGACTGA-
1 TACTGAATAAATGACT-AT
*
75835600 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
* * *
75835618 TACTGATTAACTGATTAT
1 TACTGAATAAATGACTAT
75835636 TACTG
1 TACTG
75835641 TTGACTGACT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
17 1 0.02
18 46 0.98
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:75837964 original size:38 final size:38
Alignment explanation
Indices: 75837906--75838119 Score: 194
Period size: 38 Copynumber: 5.2 Consensus size: 38
75837896 TTTCAAATTA
* *
75837906 ACATGTATAACCGTGGCATATCCACTTAACACCACGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
* *
75837944 ACATGTTTAACTGTGACATATCCACTTAGCACCACGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
75837985 GAATCAATATATGTAACCGTGGCATATCCATTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
*
75838029 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
*
75838070 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
75838114 ACATGT
1 ACATGT
75838120 ATCAATATGT
Statistics
Matches: 144, Mismatches: 14, Indels: 34
0.75 0.07 0.18
Matches are distributed among these distances:
38 59 0.41
39 3 0.02
40 6 0.04
41 4 0.03
42 2 0.01
43 2 0.01
44 4 0.03
45 6 0.04
46 4 0.03
47 54 0.38
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (38 bp):
ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:75838012 original size:85 final size:85
Alignment explanation
Indices: 75837913--75838119 Score: 369
Period size: 85 Copynumber: 2.4 Consensus size: 85
75837903 TTAACATGTA
* *
75837913 TAACCGTGGCATATCCACTTAACACCACGTTACATGTTTAACTGTGACATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGACATATCCACTTAGCACCA
75837978 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* **
75837998 TAACCGTGGCATATCCATTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGACATATCCACTTAGCACCA
75838063 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
75838083 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
75838120 ATCAATATGT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 116 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGACATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:75838029 original size:47 final size:47
Alignment explanation
Indices: 75837951--75838157 Score: 252
Period size: 47 Copynumber: 4.6 Consensus size: 47
75837941 GTTACATGTT
* *
75837951 TAACTGTGACATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
75837998 TAACCGTGGCATATCCATTTAGCACCACG-T--T--A-C-ATGT-T-
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
*
75838036 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
* *
75838083 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
* * *
75838131 TAATCATGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCA
75838158 TGTTTTTTAT
Statistics
Matches: 137, Mismatches: 13, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
38 27 0.20
39 2 0.01
40 3 0.02
41 2 0.01
42 1 0.01
43 1 0.01
44 2 0.01
45 3 0.02
46 2 0.01
47 57 0.42
48 37 0.27
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (47 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:75838145 original size:48 final size:47
Alignment explanation
Indices: 75838036--75838157 Score: 181
Period size: 48 Copynumber: 2.6 Consensus size: 47
75838026 GTTACATGTT
*
75838036 TAACCGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
* * * *
75838083 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
*
75838131 TAATCATGGTATATCCACTTAGCACCA
1 TAACCATGGTATATCCACTTAGCACCA
75838158 TGTTTTTTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 31 0.46
48 37 0.54
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
TAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATATG
Found at i:75841013 original size:46 final size:44
Alignment explanation
Indices: 75840959--75841129 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 44
75840949 TTTCGTAGCT
*
75840959 GATGCATGTCTCAGACATGTCTTACACTAGCTTACATCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTT-C-TCTCAAGGCC
* * **
75841005 GATGCATGTCCCAAACATGTCTTACAGTAGCTCTCGTCTCAATACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TC-TCTCAAGGCC
*
75841051 AATGCCATGTCCCAGACATGGTCTTACACTAGC-TCTCAT-AATGTTGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTCTC-TCAA-G--GCC
*
75841099 GATGCATGTCTCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
75841130 ACACAAATAA
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
45 4 0.04
46 57 0.54
47 27 0.26
48 17 0.16
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTCTCTCAAGGCC
Found at i:75843903 original size:24 final size:22
Alignment explanation
Indices: 75843876--75843924 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 22
75843866 ACTTTAGCCA
*
75843876 TTTATTTTTTATTGCAATTTAATT
1 TTTATTATTTATTG--ATTTAATT
75843900 TTTATTATTTATTGATTTAATT
1 TTTATTATTTATTGATTTAATT
75843922 TTT
1 TTT
75843925 CTTTCTCTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 11 0.46
24 13 0.54
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTATTATTTATTGATTTAATT
Found at i:75849532 original size:27 final size:26
Alignment explanation
Indices: 75849492--75849603 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
75849482 AGCATGGCTG
* *
75849492 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
75849518 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
75849546 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
75849573 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
75849600 CCAG
1 CCAG
75849604 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:75849584 original size:54 final size:54
Alignment explanation
Indices: 75849492--75849603 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
75849482 AGCATGGCTG
* *
75849492 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
75849546 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
75849600 CCAG
1 CCAG
75849604 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:75856987 original size:27 final size:26
Alignment explanation
Indices: 75856923--75857006 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
75856913 AGCATGGCTG
* * *
75856923 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGATCAGATAATGTGGCAGAGCCA
*
75856949 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGATAAT-GTGGCAGAGCCA
* *
75856977 CCAGATCAGATACTTGTGGCATAGCCA
1 CCAGATCAGATA-ATGTGGCAGAGCCA
75857004 CCA
1 CCA
75857007 AGACGCTTCC
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.10
27 26 0.54
28 17 0.35
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGATCAGATAATGTGGCAGAGCCA
Found at i:75858875 original size:18 final size:19
Alignment explanation
Indices: 75858839--75858880 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
75858829 TAGGGCACAG
*
75858839 AATTTTTAAATATTTCCAA
1 AATTTTTAAATATTCCCAA
*
75858858 CATTTTTAAA-ATTCCCAA
1 AATTTTTAAATATTCCCAA
75858876 AATTT
1 AATTT
75858881 GGGGCGTTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTTTTAAATATTCCCAA
Found at i:75862767 original size:35 final size:35
Alignment explanation
Indices: 75862721--75862793 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
75862711 TTTCCGAAGA
* *
75862721 TTATTCATGCTTTGAGCATTCGCACACTTAGTACT
1 TTATTCATGCTTTAAGCATCCGCACACTTAGTACT
*
75862756 TTATTCATGCTTTAAGTATCCGCACACTTAGTACT
1 TTATTCATGCTTTAAGCATCCGCACACTTAGTACT
75862791 TTA
1 TTA
75862794 AGGCTTAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.41
Consensus pattern (35 bp):
TTATTCATGCTTTAAGCATCCGCACACTTAGTACT
Found at i:75866684 original size:12 final size:12
Alignment explanation
Indices: 75866667--75866691 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75866657 ATAGGATATT
75866667 TATTCTTGATAG
1 TATTCTTGATAG
75866679 TATTCTTGATAG
1 TATTCTTGATAG
75866691 T
1 T
75866692 CACTTTGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TATTCTTGATAG
Found at i:75868908 original size:62 final size:62
Alignment explanation
Indices: 75868836--75868962 Score: 254
Period size: 62 Copynumber: 2.0 Consensus size: 62
75868826 CACACTATCG
75868836 TAATTCATATATATGGCATGTATAGCTAGGCTCACATATGCTACGTTAGTCCTAGAACTGAC
1 TAATTCATATATATGGCATGTATAGCTAGGCTCACATATGCTACGTTAGTCCTAGAACTGAC
75868898 TAATTCATATATATGGCATGTATAGCTAGGCTCACATATGCTACGTTAGTCCTAGAACTGAC
1 TAATTCATATATATGGCATGTATAGCTAGGCTCACATATGCTACGTTAGTCCTAGAACTGAC
75868960 TAA
1 TAA
75868963 ACCGTAGCTC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32
Consensus pattern (62 bp):
TAATTCATATATATGGCATGTATAGCTAGGCTCACATATGCTACGTTAGTCCTAGAACTGAC
Found at i:75869770 original size:9 final size:9
Alignment explanation
Indices: 75869756--75869782 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
75869746 GCTATTCATG
75869756 AATACATCA
1 AATACATCA
75869765 AATACATCA
1 AATACATCA
75869774 AATACATCA
1 AATACATCA
75869783 TCTTGCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
AATACATCA
Found at i:75871673 original size:42 final size:42
Alignment explanation
Indices: 75871626--75871707 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
75871616 ATGATATTTC
75871626 ATTTTTTATCATCTTTTAATTAATTAAATATTTTCACTTTTT
1 ATTTTTTATCATCTTTTAATTAATTAAATATTTTCACTTTTT
75871668 ATTTTTTATCATCTTTTAATTAATTAAATATTTTCACTTT
1 ATTTTTTATCATCTTTTAATTAATTAAATATTTTCACTTT
75871708 CCAATTTAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (42 bp):
ATTTTTTATCATCTTTTAATTAATTAAATATTTTCACTTTTT
Found at i:75878840 original size:27 final size:27
Alignment explanation
Indices: 75878799--75878852 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
75878789 TGTCATGTGA
*
75878799 AATTGAATGGCAAATTAATTTTACATG
1 AATTGAATGGCAAATTAATATTACATG
** *
75878826 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTAATATTACATG
75878853 GGTTGTTCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTAATATTACATG
Found at i:75879174 original size:49 final size:49
Alignment explanation
Indices: 75879085--75879323 Score: 223
Period size: 49 Copynumber: 4.8 Consensus size: 49
75879075 GTGAGGTCAC
* * *
75879085 GTGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCGGATAATTGGTTGCA
1 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTT-CA
* * * * * *
75879135 -TGTGTAGTACGAAGTGCAGGCTACTATGCGCACCCGATAACTTCGATCA
1 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TTGGTTCA
* * * * **
75879184 CGTATGTAGTACTAAGTCCAGGCTACTACGTGTATCAGATGGTTAGG-TCAA
1 -GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTTC-A
* * * *
75879235 GCGTGTAGTACTAAGTGTAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGT-TCA
*
75879285 -TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
75879324 GCCTTGTCTG
Statistics
Matches: 149, Mismatches: 33, Indels: 15
0.76 0.17 0.08
Matches are distributed among these distances:
49 73 0.49
50 43 0.29
51 33 0.22
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTTCA
Found at i:75882587 original size:31 final size:31
Alignment explanation
Indices: 75882549--75882612 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
75882539 CCTTTTCATA
75882549 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
75882580 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
75882611 TT
1 TT
75882613 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:75882870 original size:23 final size:24
Alignment explanation
Indices: 75882820--75882899 Score: 128
Period size: 23 Copynumber: 3.4 Consensus size: 24
75882810 CTAGAGGCCT
*
75882820 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
75882845 AGCCCTTTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75882868 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75882891 AGCCCTTTT
1 AGCCCTTTT
75882900 TCACTTCCTC
Statistics
Matches: 52, Mismatches: 1, Indels: 5
0.90 0.02 0.09
Matches are distributed among these distances:
22 10 0.19
23 23 0.44
24 15 0.29
25 4 0.08
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:75882974 original size:20 final size:20
Alignment explanation
Indices: 75882949--75882995 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
75882939 TTATGAATAC
75882949 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75882969 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75882989 ACCATGT
1 ATCATGT
75882996 TTACTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75887714 original size:27 final size:27
Alignment explanation
Indices: 75887684--75887738 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
75887674 ATGCCATGTG
* *
75887684 AAATTGAATGGCAAATTATTGTTACAT
1 AAATTGAATGGCAAATTACTATTACAT
**
75887711 AAATTGAATGTTAAATTACTATTACAT
1 AAATTGAATGGCAAATTACTATTACAT
75887738 A
1 A
75887739 GTTTGTATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (27 bp):
AAATTGAATGGCAAATTACTATTACAT
Found at i:75893811 original size:39 final size:40
Alignment explanation
Indices: 75893768--75893948 Score: 246
Period size: 39 Copynumber: 4.7 Consensus size: 40
75893758 ACCAGCTCGA
* * * * *
75893768 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACAT
1 AGCCTGCGGGACCCTAAGTCCGGATATAATTCCAGCACAT
* *
75893807 AGCCTAC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCCTAAGTCCGGATATAATTCCAGCACAT
*
75893846 AGCCTG-TGGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCCTAAGTCCGGATATAATTCCAGCACAT
*
75893885 AGCCTG-TGGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCCTAAGTCCGGATATAATTCCAGCACAT
75893924 AGCCTGC-GGACCCTAAGTCCGGATA
1 AGCCTGCGGGACCCTAAGTCCGGATA
75893949 CATATCAAAT
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 3 0.02
39 129 0.98
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCCTGCGGGACCCTAAGTCCGGATATAATTCCAGCACAT
Found at i:75893947 original size:78 final size:78
Alignment explanation
Indices: 75893786--75893948 Score: 272
Period size: 78 Copynumber: 2.1 Consensus size: 78
75893776 GGACTTTAGC
* * *
75893786 CCGGACATATTTCCAGCACATAGCCTACGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
*
75893851 GTGGACCCTAAGT
66 GCGGACCCTAAGT
**
75893864 CCGGATATAATTCCAGCACATAGCCTGTGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
75893929 GCGGACCCTAAGT
66 GCGGACCCTAAGT
75893942 CCGGATA
1 CCGGATA
75893949 CATATCAAAT
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (78 bp):
CCGGATATAATTCCAGCACATAGCCTACGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:75900987 original size:29 final size:29
Alignment explanation
Indices: 75900838--75900978 Score: 255
Period size: 29 Copynumber: 4.9 Consensus size: 29
75900828 GTGACGAGAT
75900838 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
75900867 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
75900896 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
75900925 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
75900954 TGGCACTAAGTGTGCAAGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
75900979 AGTACGGCAT
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 109 1.00
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:75903976 original size:39 final size:38
Alignment explanation
Indices: 75903877--75904057 Score: 152
Period size: 39 Copynumber: 4.7 Consensus size: 38
75903867 ACTTGAAACC
** *
75903877 AATTACCAGCACA-AGCCTGCAGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACATAGCCTGC-GGACCTT-AGCCCGGATAT
* * * * *
75903916 AATACCAGCTCGA-AGCTTGCGGGACTTTAGCCCGGACAT
1 AATTCCAGCAC-ATAGCCTGC-GGACCTTAGCCCGGATAT
* * *
75903955 ATTTCCAGCACATAGCCTGCGGACCTTAACTCTGGATAT
1 AATTCCAGCACATAGCCTGCGGACCTTAGC-CCGGATAT
* * *
75903994 AATTCCAGCACATTGCCTGCGGACCCTAAGTCCGGATAT
1 AATTCCAGCACATAGCCTGCGGA-CCTTAGCCCGGATAT
75904033 AATTCCAGCACATAGCCTGCGGACC
1 AATTCCAGCACATAGCCTGCGGACC
75904058 CTAAGTCCGG
Statistics
Matches: 115, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
38 23 0.20
39 88 0.77
40 4 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (38 bp):
AATTCCAGCACATAGCCTGCGGACCTTAGCCCGGATAT
Found at i:75904058 original size:39 final size:39
Alignment explanation
Indices: 75903947--75904070 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
75903937 GGACTTTAGC
* * * *
75903947 CCGGACATATTTCCAGCACATAGCCTGCGGACCTTAACT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
75903986 CTGGATATAATTCCAGCACATTGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
75904025 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
75904064 CCGGATA
1 CCGGATA
75904071 CACATCAAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:75908468 original size:30 final size:29
Alignment explanation
Indices: 75908374--75908475 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
75908364 TATAGTGAAT
* * *
75908374 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
75908403 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
75908431 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
75908461 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
75908476 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:75916317 original size:30 final size:29
Alignment explanation
Indices: 75916223--75916324 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
75916213 TATAGTGAAT
* * *
75916223 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
75916252 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
75916280 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
75916310 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
75916325 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:75920082 original size:48 final size:48
Alignment explanation
Indices: 75920023--75920196 Score: 233
Period size: 48 Copynumber: 3.6 Consensus size: 48
75920013 ATATTGGTGT
* * * * * * * *
75920023 CGATGCAATGTCCCAAACATGGACTTACAGTTGCACACATATCATCGG
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCATACATATCAACGG
* *
75920071 CGATGCCATGTCCTAGACATGGTCTTACACTGGCATGCATATCAACGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCATACATATCAACGG
75920119 CGATGCCATGTCCTAGACATGGTCTTACACTGGCATACATATCAAC-G
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCATACATATCAACGG
*
75920166 CTGATGTCATGTCCTAGACATGGTCTTACAC
1 C-GATGCCATGTCCTAGACATGGTCTTACAC
75920197 GAGATCTAAC
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 111 0.99
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGGCATACATATCAACGG
Found at i:75920498 original size:19 final size:19
Alignment explanation
Indices: 75920459--75920498 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
75920449 AATCACCTTT
*
75920459 AACTTAACAATTTCGAATC
1 AACTTAACAATTTAGAATC
* *
75920478 AACTTACCAATTTAGATTC
1 AACTTAACAATTTAGAATC
75920497 AA
1 AA
75920499 TCCCAAACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (19 bp):
AACTTAACAATTTAGAATC
Found at i:75926898 original size:48 final size:48
Alignment explanation
Indices: 75926846--75927031 Score: 176
Period size: 48 Copynumber: 3.9 Consensus size: 48
75926836 TATACGGGGT
* * *
75926846 CACATATTGGTGCTGATGCCATGTCCCAGACATGGTCTTACATTTGCA
1 CACATATTAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * *
75926894 CACATATCA-TCGTTGATGCCATGTTCCAGACATGGTCTTACACTGGCA
1 CACATATTAGT-GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * ** * *
75926942 TACATATCAACGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCA
1 CACATATTAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
* * ** * * * *
75926990 TACATATCAACGCCGATGCCATTTCCTAAACATGGTCTTACA
1 CACATATTAGTGCTGATGCCATGTCCCAGACATGGTCTTACA
75927032 AGGGATCTAA
Statistics
Matches: 120, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 119 0.99
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
CACATATTAGTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCA
Found at i:75930837 original size:47 final size:47
Alignment explanation
Indices: 75930762--75930872 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
75930752 CCCCTCGGGA
* * *
75930762 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
75930809 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
75930856 CTTATCACATATATACA
1 CTTATCACTTATATACA
75930873 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:75930928 original size:46 final size:46
Alignment explanation
Indices: 75930876--75931057 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
75930866 ATATACATCT
* * *
75930876 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
75930922 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
75930968 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
75931014 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
75931058 ATATTTAACT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:75933807 original size:40 final size:40
Alignment explanation
Indices: 75933758--75933862 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 40
75933748 GACTCGCTCG
* * *
75933758 ATTGTCTTCGGGACATAGCCCGG-TTATAGTGATTCACACA
1 ATTGCCTTCGGGACATAGCCCGGATT-TAGTAACTCACACA
*
75933798 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACA
1 ATTGCCTTCGGGACA-TAGCCCGGATTTAGTAACTCACACA
** *
75933838 AAAGCCTTCGGGACTTAGCCCGGAT
1 ATTGCCTTCGGGACATAGCCCGGAT
75933863 ACCATTCGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 52 0.95
41 2 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
ATTGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACA
Found at i:75934571 original size:40 final size:40
Alignment explanation
Indices: 75934522--75934707 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
75934512 CCAGCATGAT
* *
75934522 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
75934562 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
75934602 TGCTCTTCGGAACTTAGTCCGGAT--ATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
75934640 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
75934680 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGAACTTAGCCCGGATACATC
75934708 GTCGAGACCT
Statistics
Matches: 136, Mismatches: 8, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
38 36 0.26
39 3 0.02
40 97 0.71
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:75934643 original size:78 final size:79
Alignment explanation
Indices: 75934522--75934703 Score: 294
Period size: 78 Copynumber: 2.3 Consensus size: 79
75934512 CCAGCATGAT
* *
75934522 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATA-ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
75934587 CATCACTAGCACGAA
65 CATCACTAGCACGAA
* * * *
75934602 TGCTCTTCGGAACTTAGTCCGGAT-ATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATAATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
75934666 ATCACTAGCACGAA
66 ATCACTAGCACGAA
75934680 TGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGAT
75934704 CATCGTCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 73 0.78
80 21 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
TGCTCTTCGGGACTTAGCCCGGATAATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
ATCACTAGCACGAA
Found at i:75937337 original size:47 final size:47
Alignment explanation
Indices: 75937262--75937372 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
75937252 CCCCTCGGGA
* * *
75937262 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
75937309 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
75937356 CTTATCACATATATACA
1 CTTATCACTTATATACA
75937373 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:75937428 original size:46 final size:46
Alignment explanation
Indices: 75937376--75937557 Score: 337
Period size: 46 Copynumber: 4.0 Consensus size: 46
75937366 ATATACATCT
* * *
75937376 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
75937422 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
75937468 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
75937514 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
75937558 ATATTTAACT
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 133 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:75939937 original size:24 final size:24
Alignment explanation
Indices: 75939905--75939967 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
75939895 CACTTAGTTT
*
75939905 TTGCACACATAGTGCCGCATAACC
1 TTGCACACATAGTGCCACATAACC
75939929 TTGCACACATAGTGCCACATAACC
1 TTGCACACATAGTGCCACATAACC
75939953 TTGCACACATAGTGC
1 TTGCACACATAGTGC
75939968 TGAAATTTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (24 bp):
TTGCACACATAGTGCCACATAACC
Found at i:75940364 original size:20 final size:21
Alignment explanation
Indices: 75940322--75940370 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
75940312 ACTTATTTTT
* *
75940322 TTATTTCTTCTTTTATTACTA
1 TTATTTATTTTTTTATTACTA
75940343 TT-TTTATTTTTTTATT-CATA
1 TTATTTATTTTTTTATTAC-TA
75940363 TTATTTAT
1 TTATTTAT
75940371 GATATTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 1 0.04
20 16 0.67
21 7 0.29
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATTTATTTTTTTATTACTA
Found at i:75943840 original size:93 final size:93
Alignment explanation
Indices: 75943732--75943902 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
75943722 GCCCCTAAGT
* * * *
75943732 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
75943796 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
75943825 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
75943890 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75943903 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:75943899 original size:46 final size:45
Alignment explanation
Indices: 75943727--75943898 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 45
75943717 AACCCGCCCC
* * * *
75943727 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTC-GGCATTCGCATCCA
* * *
75943773 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGCATTCGC-A--TCCA
* *
75943819 TTTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCAGACTCAACTCAACGAGTTCGG-CATTCGCATCCA
*
75943866 TAGGTGAACTCAGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
75943899 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 3 0.03
46 61 0.59
47 30 0.29
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGCATTCGCATCCA
Found at i:75950351 original size:24 final size:24
Alignment explanation
Indices: 75950319--75950401 Score: 98
Period size: 24 Copynumber: 3.4 Consensus size: 24
75950309 ACTTATTCGT
75950319 ACACATAGTGCCACGTTTTCTCGC
1 ACACATAGTGCCACGTTTTCTCGC
* **
75950343 ACACATAGTGCCATGTAATCTCGC
1 ACACATAGTGCCACGTTTTCTCGC
75950367 ACACATAGTGCCACTTAGTTTT-T-GC
1 ACACATAGTGCCAC---GTTTTCTCGC
75950392 ACACATAGTG
1 ACACATAGTG
75950402 TTGCATAACC
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
24 34 0.68
25 12 0.24
26 1 0.02
27 3 0.06
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (24 bp):
ACACATAGTGCCACGTTTTCTCGC
Found at i:75950420 original size:24 final size:24
Alignment explanation
Indices: 75950388--75950452 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 24
75950378 CACTTAGTTT
75950388 TTGCACACATAGTGTTGCATAACC
1 TTGCACACATAGTGTTGCATAACC
***
75950412 TTGCACACATAGTGCCACATAACC
1 TTGCACACATAGTGTTGCATAACC
75950436 TTGCACACATAGTGTTG
1 TTGCACACATAGTGTTG
75950453 AAATTTCTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (24 bp):
TTGCACACATAGTGTTGCATAACC
Found at i:75961192 original size:21 final size:21
Alignment explanation
Indices: 75961166--75961215 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
75961156 GCTAGAACAC
75961166 ACTTTTACTACATATTTTATA
1 ACTTTTACTACATATTTTATA
75961187 ACTTTTACTACATATTTTATA
1 ACTTTTACTACATATTTTATA
75961208 ACTTTTAC
1 ACTTTTAC
75961216 GATTTAGTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (21 bp):
ACTTTTACTACATATTTTATA
Found at i:75966314 original size:42 final size:41
Alignment explanation
Indices: 75966256--75966371 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 41
75966246 ATGCCAATAG
* * * *
75966256 CCCAGCTATGGTCTTACACGAAATCTCATATTGATGCTATAT
1 CCCAGATATGGTCTTACAC-AAATCTCATAATGATGCCACAT
75966298 CCCAGATATGGTCTTACACAAAGTCTCATAATGATGCCACAT
1 CCCAGATATGGTCTTACACAAA-TCTCATAATGATGCCACAT
75966340 CCCAGATATGGTCTTACACATAATCTCGATAA
1 CCCAGATATGGTCTTACACA-AATCTC-ATAA
75966372 CCCTAATGTC
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
41 3 0.04
42 58 0.87
43 6 0.09
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (41 bp):
CCCAGATATGGTCTTACACAAATCTCATAATGATGCCACAT
Found at i:75971375 original size:38 final size:39
Alignment explanation
Indices: 75971289--75971439 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 39
75971279 GGATATAGCG
* * * * **
75971289 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATGGTA
* * *
75971329 GCTCGCACAAATGCCTTCGGACTTAACCCGGATTTGG-A
1 ACTCGCACAAATGCCTTCGGACTTAGCCCGGATATGGTA
* *
75971367 ACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGA-CTTAGCCCGGATATGGTA
*
75971407 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTC-GGACTTAGCCCGGA
75971440 CATCATTCGA
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
38 21 0.23
39 26 0.29
40 33 0.36
41 11 0.12
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGACTTAGCCCGGATATGGTA
Found at i:75980753 original size:24 final size:24
Alignment explanation
Indices: 75980486--75980751 Score: 453
Period size: 24 Copynumber: 11.1 Consensus size: 24
75980476 GCAAAGACCA
75980486 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
75980510 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
75980534 TATGGCACTATGTGTG-GATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
75980557 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
75980581 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
75980605 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
75980629 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
75980653 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
75980677 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
75980701 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* * *
75980725 TATAGCACCATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
75980749 TAT
1 TAT
75980752 AGTCACATTC
Statistics
Matches: 230, Mismatches: 11, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
23 22 0.10
24 208 0.90
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:75983303 original size:2 final size:2
Alignment explanation
Indices: 75983296--75983321 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75983286 ATGTGCAAAC
75983296 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
75983322 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75987315 original size:101 final size:101
Alignment explanation
Indices: 75987168--75987394 Score: 294
Period size: 101 Copynumber: 2.2 Consensus size: 101
75987158 GCACACACAT
* * *
75987168 ATATCGAAATCACATTTCGATGCCAACGTATAAAACATAGACTTACTCGTACACATATATCGGAA
1 ATATCGAAATCACATATCGATGCCAACGTATAAAACATAGACTTACTCGCACACATATATAGGAA
* * *
75987233 TCATATATCGATGACATGGCCTTACTCGCACATCAC
66 TCACACATCGATGACAAGGCCTTACTCGCACATCAC
* * * * *
75987269 ATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTA-TTACTCGCGCACATATATAGGA
1 ATATCGAAATCACATATCGATGCCAACGTATAAAACATAG-ACTTACTCGCACACATATATAGGA
* *
75987333 ATCACACATCGATGCCAAGGTCTTACTCGCACATCAC
65 ATCACACATCGATGACAAGGCCTTACTCGCACATCAC
* *
75987370 ATATCAAAATTCACATGTCGATGCC
1 ATATCGAAA-TCACATATCGATGCC
75987395 TCATATACAT
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
101 93 0.86
102 15 0.14
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (101 bp):
ATATCGAAATCACATATCGATGCCAACGTATAAAACATAGACTTACTCGCACACATATATAGGAA
TCACACATCGATGACAAGGCCTTACTCGCACATCAC
Found at i:75992285 original size:37 final size:37
Alignment explanation
Indices: 75992192--75992285 Score: 86
Period size: 37 Copynumber: 2.6 Consensus size: 37
75992182 TAAGCATTTG
* * *
75992192 TCAGTA-AATAGTAAAATTTACTCAATTAAACGTTAT
1 TCAGTATAACAGTAATATTTGCTCAATTAAACGTTAT
* * * *
75992228 TCAATATAACTGT-ATGATTTGCTCGATTAAGC-TTCAT
1 TCAGTATAACAGTAAT-ATTTGCTCAATTAAACGTT-AT
75992265 TCAGTATAACAGTAATATTTG
1 TCAGTATAACAGTAATATTTG
75992286 ACTGGGTAGA
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
36 8 0.18
37 35 0.78
38 2 0.04
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (37 bp):
TCAGTATAACAGTAATATTTGCTCAATTAAACGTTAT
Found at i:75999776 original size:7 final size:7
Alignment explanation
Indices: 75999764--75999806 Score: 77
Period size: 7 Copynumber: 6.1 Consensus size: 7
75999754 ATGTAAGGAT
75999764 GGGTTTG
1 GGGTTTG
75999771 GGGTTTG
1 GGGTTTG
75999778 GGGTTTG
1 GGGTTTG
75999785 GGGTTTG
1 GGGTTTG
75999792 GGGTTTG
1 GGGTTTG
*
75999799 GGATTTG
1 GGGTTTG
75999806 G
1 G
75999807 AAACATTTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.02, C:0.00, G:0.56, T:0.42
Consensus pattern (7 bp):
GGGTTTG
Found at i:76000526 original size:31 final size:31
Alignment explanation
Indices: 76000491--76000549 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
76000481 TAGTGAATTA
* *
76000491 AATAAAAACTTTTGAATAGTTCAATGACTTG
1 AATAAAAACTTCTGAATAATTCAATGACTTG
*
76000522 AATAAAAACTTCTGAATAATTCAGTGAC
1 AATAAAAACTTCTGAATAATTCAATGAC
76000550 CATTTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (31 bp):
AATAAAAACTTCTGAATAATTCAATGACTTG
Found at i:76008310 original size:40 final size:40
Alignment explanation
Indices: 76008119--76008303 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
76008109 TCGAATGATG
* * *
76008119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
76008159 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76008199 TCCGGACTAAAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76008238 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76008279 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76008304 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 37 0.28
40 84 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76008325 original size:79 final size:79
Alignment explanation
Indices: 76008119--76008336 Score: 243
Period size: 79 Copynumber: 2.7 Consensus size: 79
76008109 TCGAATGATG
* *
76008119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCAT
76008182 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* * *
76008199 TCCGGACTAAAT-CCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCAT
76008261 TTGTGCGAGTTACTATAA
63 TTGTGCGAGTTACTA-AA
* **
76008279 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGA-TCCGAAGG
76008337 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 21
0.79 0.07 0.14
Matches are distributed among these distances:
78 1 0.01
79 69 0.59
80 47 0.40
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:76008333 original size:119 final size:119
Alignment explanation
Indices: 76008119--76008336 Score: 282
Period size: 119 Copynumber: 1.8 Consensus size: 119
76008109 TCGAATGATG
*
76008119 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
76008184 GTGCGAGTTACTAAATCCGGACTAAATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GAACGAGTTACTAAATCCGGACTAAATCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
76008238 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
* *
76008301 TTGAACGAG-TAGCTATATCCGG-TTAAACTCCGAAGG
64 TTGAACGAGTTA-CTAAATCCGGACTAAA-TCCGAAGG
76008337 TACGTGATTC
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
118 7 0.08
119 71 0.84
120 7 0.08
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAATCCGGACTAAATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76016431 original size:40 final size:40
Alignment explanation
Indices: 76016239--76016424 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
76016229 TCGAATGATG
* * *
76016239 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
76016279 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76016319 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76016359 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76016400 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76016425 AACGAGTAGC
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76016431 original size:80 final size:80
Alignment explanation
Indices: 76016239--76016457 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 80
76016229 TCGAATGATG
* * **
76016239 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
76016303 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* *
76016319 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
76016382 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTA-AA
* **
76016400 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
76016458 TACGTGATTC
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
79 17 0.14
80 93 0.77
81 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:76020062 original size:66 final size:66
Alignment explanation
Indices: 76019940--76020069 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
76019930 TCTGTGTATG
* * * *
76019940 TCAAATAACTAGGATGTTATGATCGAGATGAATCAAGTGCTCCTAGCTAAACGTGTTATGAATGG
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG
76020005 A
66 A
* * * * *
76020006 TCAAATAACTAGGATGCTATGATTGAAATGAATCAAATGCTCTTAATTAGATGTGTTATGAATG
1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATG
76020070 ATGTATGAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (66 bp):
TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG
A
Found at i:76042197 original size:3 final size:3
Alignment explanation
Indices: 76041754--76042182 Score: 221
Period size: 3 Copynumber: 145.0 Consensus size: 3
76041744 TTAATTAATT
* * *
76041754 TTA TTT TTA TTA TTA ATA TTA TTA TTA TTA CTA TT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * ** * * *
76041801 CTA TTA CTA TTA TTT TTA TTA CCA TTA TTA TTA CTA TTT TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
76041849 TTA TTA TTA CTA TT- GTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
76041896 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA -TA TT- TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
76041942 TT- TTT TTT TGTA TTTA CATA TAA GTTA TTA TTA TTA -TA TTA -AA TAA
1 TTA TTA TTA T-TA -TTA -TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
76041988 TTTA ATA TTA TT- TT- TTA GCA -CA TTTA TT- TTA TT- TTA TTTA TATA
1 -TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA -TTA T-TA
* * * * * *
76042032 TCA TTA CTC TTA TTA TTA TCA TT- TTA TCA TTCA TT- TTA TTTA TATC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA -TTA T-TA
* * * * * * ** *
76042078 TTT TTA -AA TAA TT- TCA -AA CT- TTA GAA TAA TTA TTA TT- TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
*
76042119 TTTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
76042165 TTA TTA TTA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA
76042183 CCATCATCAT
Statistics
Matches: 327, Mismatches: 69, Indels: 60
0.72 0.15 0.13
Matches are distributed among these distances:
2 31 0.09
3 269 0.82
4 25 0.08
5 2 0.01
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:76043802 original size:26 final size:26
Alignment explanation
Indices: 76043754--76043804 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
76043744 GATGTAAATT
* * * *
76043754 AAAATTTTCAACTATTTTTTATATAC
1 AAAATATTCAACCATTATATATATAC
76043780 AAAATATTCAACCATTATATATATA
1 AAAATATTCAACCATTATATATATA
76043805 TATATATTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (26 bp):
AAAATATTCAACCATTATATATATAC
Found at i:76044553 original size:21 final size:22
Alignment explanation
Indices: 76044529--76044569 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
76044519 TTTTGAGCAA
76044529 TTTAACCTT-TTTTTATGTTCT
1 TTTAACCTTCTTTTTATGTTCT
* *
76044550 TTTAACTTTCTTTTTTTGTT
1 TTTAACCTTCTTTTTATGTT
76044570 TTCTTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.71
Consensus pattern (22 bp):
TTTAACCTTCTTTTTATGTTCT
Found at i:76044576 original size:12 final size:13
Alignment explanation
Indices: 76044556--76044584 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
76044546 TTCTTTTAAC
76044556 TTTCTTTTTTTGT
1 TTTCTTTTTTTGT
76044569 TTTC-TTTTTTGT
1 TTTCTTTTTTTGT
76044581 TTTC
1 TTTC
76044585 ATTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (13 bp):
TTTCTTTTTTTGT
Found at i:76053106 original size:48 final size:48
Alignment explanation
Indices: 76053050--76053148 Score: 198
Period size: 48 Copynumber: 2.1 Consensus size: 48
76053040 TGATAGAAGT
76053050 ATGAAATATTACCCATATTTGGCAATATGGGGTCAGAAATAAGCATGG
1 ATGAAATATTACCCATATTTGGCAATATGGGGTCAGAAATAAGCATGG
76053098 ATGAAATATTACCCATATTTGGCAATATGGGGTCAGAAATAAGCATGG
1 ATGAAATATTACCCATATTTGGCAATATGGGGTCAGAAATAAGCATGG
76053146 ATG
1 ATG
76053149 GATGTCGAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.27
Consensus pattern (48 bp):
ATGAAATATTACCCATATTTGGCAATATGGGGTCAGAAATAAGCATGG
Found at i:76064522 original size:21 final size:20
Alignment explanation
Indices: 76064472--76064526 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
76064462 TGAATAAAAG
*
76064472 ATTTATTAATTAAAAAGATA
1 ATTTATTAATTAAAAAAATA
* *
76064492 AATTA-AAATTAAAAAAATA
1 ATTTATTAATTAAAAAAATA
76064511 TATTTATTAATTAAAA
1 -ATTTATTAATTAAAA
76064527 TAAAAACTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.43
20 8 0.29
21 8 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
ATTTATTAATTAAAAAAATA
Found at i:76066622 original size:32 final size:32
Alignment explanation
Indices: 76066576--76066657 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
76066566 TGTCAATCAT
*
76066576 TTCAATATCCAACAAGCTT-AAAACATAATAAA
1 TTCAATATCCAACAA-ATTCAAAACATAATAAA
** * *
76066608 TTCAATATGTAACAAATTCAAGACATAATAAT
1 TTCAATATCCAACAAATTCAAAACATAATAAA
*
76066640 TTCAAAATCCAACAAATT
1 TTCAATATCCAACAAATT
76066658 AAATTTTCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 2 0.05
32 39 0.95
ACGTcount: A:0.51, C:0.17, G:0.04, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAATTCAAAACATAATAAA
Found at i:76071089 original size:40 final size:40
Alignment explanation
Indices: 76071034--76071111 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
76071024 GGAATGAGAG
* ** *
76071034 TTGCCTGAGAAAGAGAGAAAGGGATGAATGAGATTTGCCT
1 TTGCCAGAGAAAGAGAGAAAAAGAGGAATGAGATTTGCCT
76071074 TTGCCAGAGAAAGAGAGAAAAAGAGGAATGAGATTTGC
1 TTGCCAGAGAAAGAGAGAAAAAGAGGAATGAGATTTGC
76071112 AGAAAAAGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.40, C:0.09, G:0.32, T:0.19
Consensus pattern (40 bp):
TTGCCAGAGAAAGAGAGAAAAAGAGGAATGAGATTTGCCT
Found at i:76071111 original size:34 final size:34
Alignment explanation
Indices: 76071020--76071129 Score: 91
Period size: 40 Copynumber: 3.1 Consensus size: 34
76071010 AGACCTTGCG
* *
76071020 AAGAGGAATGAGAGTTGCCTGAGAAAGAGAGAAA
1 AAGAGGAATGAGATTTGCCAGAGAAAGAGAGAAA
** *
76071054 GGGATGAATGAGATTTGCCTTTGCCAGAGAAAGAGAGAAA
1 AAGAGGAATGAGA------TTTGCCAGAGAAAGAGAGAAA
76071094 AAGAGGAATGAGATTTG-CAGA-AAA-AGAGAAA
1 AAGAGGAATGAGATTTGCCAGAGAAAGAGAGAAA
*
76071125 GAGAG
1 AAGAG
76071130 AAAAATGATG
Statistics
Matches: 61, Mismatches: 9, Indels: 15
0.72 0.11 0.18
Matches are distributed among these distances:
31 11 0.18
32 3 0.05
33 4 0.07
34 14 0.23
40 29 0.48
ACGTcount: A:0.45, C:0.06, G:0.34, T:0.15
Consensus pattern (34 bp):
AAGAGGAATGAGATTTGCCAGAGAAAGAGAGAAA
Found at i:76071443 original size:41 final size:40
Alignment explanation
Indices: 76071364--76071442 Score: 104
Period size: 43 Copynumber: 1.9 Consensus size: 40
76071354 GCTTAACGTT
76071364 AAAATGCATTTTTCAAATTTGAGTGAATTTAAAAAAAATAA
1 AAAATGCATTTTTCAAATTTGAGTGAATTT-AAAAAAATAA
* * *
76071405 AAAATGCATTTTTTTTAATTTTGAGTGAATTTAGAAAA
1 AAAATGCA--TTTTTCAAATTTGAGTGAATTTAAAAAA
76071443 TGTCGATGGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 8 0.24
42 5 0.15
43 20 0.61
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (40 bp):
AAAATGCATTTTTCAAATTTGAGTGAATTTAAAAAAATAA
Found at i:76071629 original size:6 final size:7
Alignment explanation
Indices: 76071610--76071643 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
76071600 AATTAGATTT
76071610 TTAAAAA
1 TTAAAAA
76071617 TTAAAAA
1 TTAAAAA
76071624 TTAAAAA
1 TTAAAAA
*
76071631 ATAATAAA
1 TTAA-AAA
76071639 TTAAA
1 TTAAA
76071644 TTTTTTAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TTAAAAA
Found at i:76074302 original size:20 final size:20
Alignment explanation
Indices: 76074256--76074407 Score: 59
Period size: 20 Copynumber: 7.6 Consensus size: 20
76074246 GTATAAACTA
*
76074256 TAATTCATTCATATAACCAG
1 TAATTCATCCATATAACCAG
* *
76074276 TAGTTCATCCGTATAACTC-G
1 TAATTCATCCATATAAC-CAG
*
76074296 TAATTCAT-CAGTAATAA-CAA
1 TAATTCATCCA-T-ATAACCAG
* * *
76074316 TAATTTATCCGTATCAA-AAG
1 TAATTCATCCATAT-AACCAG
***
76074336 TAATTCATTTGTATTAA-CAG
1 TAATTCATCCATA-TAACCAG
* *
76074356 TAATTCATACATATCAA-CAA
1 TAATTCATCCATAT-AACCAG
*
76074376 TAATTCATTCA-ATTCAA-CAG
1 TAATTCATCCATA-T-AACCAG
76074396 TAATTCATCCAT
1 TAATTCATCCAT
76074408 TAATACAATA
Statistics
Matches: 101, Mismatches: 21, Indels: 19
0.72 0.15 0.13
Matches are distributed among these distances:
19 6 0.06
20 88 0.87
21 7 0.07
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (20 bp):
TAATTCATCCATATAACCAG
Found at i:76074339 original size:40 final size:41
Alignment explanation
Indices: 76074295--76074383 Score: 101
Period size: 40 Copynumber: 2.2 Consensus size: 41
76074285 CGTATAACTC
* * *
76074295 GTAATTCATCAGTAATAACAATAATTTATCCGTATCAA-AA
1 GTAATTCATCAGTAATAACAATAATTCATACATATCAACAA
** * *
76074335 GTAATTCATTTGTATTAACAGTAATTCATACATATCAACAA
1 GTAATTCATCAGTAATAACAATAATTCATACATATCAACAA
76074376 -TAATTCAT
1 GTAATTCAT
76074384 TCAATTCAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 39 0.95
41 2 0.05
ACGTcount: A:0.43, C:0.15, G:0.07, T:0.36
Consensus pattern (41 bp):
GTAATTCATCAGTAATAACAATAATTCATACATATCAACAA
Found at i:76074384 original size:40 final size:40
Alignment explanation
Indices: 76074327--76074403 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
76074317 AATTTATCCG
**
76074327 TATCAAAAGTAATTCATTTGTATT-AACAGTAATTCATACA
1 TATCAAAAGTAATTCA-TTCAATTCAACAGTAATTCATACA
76074367 TATCAACAA-TAATTCATTCAATTCAACAGTAATTCAT
1 TATCAA-AAGTAATTCATTCAATTCAACAGTAATTCAT
76074404 CCATTAATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 5 0.15
40 26 0.79
41 2 0.06
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (40 bp):
TATCAAAAGTAATTCATTCAATTCAACAGTAATTCATACA
Found at i:76074630 original size:26 final size:24
Alignment explanation
Indices: 76074601--76074659 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
76074591 GTCATGGTCG
*
76074601 GTAAACTCCTTCTGAGCTGATAAACA
1 GTAAACT-CTTCTGAGCT-AAAAACA
* *
76074627 GTAAGCTCTTTTGAGCTAAAAACA
1 GTAAACTCTTCTGAGCTAAAAACA
*
76074651 GTAAGCTCT
1 GTAAACTCT
76074660 ATTCAGCTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 15 0.50
25 9 0.30
26 6 0.20
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (24 bp):
GTAAACTCTTCTGAGCTAAAAACA
Found at i:76074679 original size:46 final size:46
Alignment explanation
Indices: 76074622--76074722 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
76074612 CTGAGCTGAT
* * * *
76074622 AAACAGTAAGCTCTTTTGAGCTAAAAACAGTAAGCTCTATTCAGCTG
1 AAACAGTAAGCTCTATCGAGCT-AAAACAGTAAGCTCCAATCAGCTG
* * *
76074669 -AACAGTAAGCTCTATCGAGCTGAATCAGTAAGCTCCAATGAGCTG
1 AAACAGTAAGCTCTATCGAGCTAAAACAGTAAGCTCCAATCAGCTG
76074714 AAACAGTAA
1 AAACAGTAA
76074723 ACTTTTATAA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
45 19 0.41
46 27 0.59
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.24
Consensus pattern (46 bp):
AAACAGTAAGCTCTATCGAGCTAAAACAGTAAGCTCCAATCAGCTG
Found at i:76074701 original size:23 final size:23
Alignment explanation
Indices: 76074622--76074722 Score: 109
Period size: 23 Copynumber: 4.4 Consensus size: 23
76074612 CTGAGCTGAT
* * *
76074622 AAACAGTAAGCTCTTTTGAGCTAA
1 AAACAGTAAGCTCTATCGAGCT-G
76074646 AAACAGTAAGCTCTATTC-AGCTG
1 AAACAGTAAGCTCTA-TCGAGCTG
76074669 -AACAGTAAGCTCTATCGAGCTG
1 AAACAGTAAGCTCTATCGAGCTG
* *
76074691 AATCAGTAAGCTCCAAT-GAGCTG
1 AAACAGTAAGCT-CTATCGAGCTG
76074714 AAACAGTAA
1 AAACAGTAA
76074723 ACTTTTATAA
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.03
22 19 0.28
23 24 0.36
24 21 0.31
25 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.24
Consensus pattern (23 bp):
AAACAGTAAGCTCTATCGAGCTG
Found at i:76077108 original size:16 final size:17
Alignment explanation
Indices: 76077071--76077109 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
76077061 GAATGAGATG
76077071 ATTTTATATTTTTGGAT
1 ATTTTATATTTTTGGAT
* *
76077088 -TTTTTTATTTTTTGAT
1 ATTTTATATTTTTGGAT
76077104 ATTTTA
1 ATTTTA
76077110 ACAATTCAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 2
0.78 0.13 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (17 bp):
ATTTTATATTTTTGGAT
Found at i:76077741 original size:23 final size:24
Alignment explanation
Indices: 76077687--76077743 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
76077677 AAAATTTGGT
*
76077687 TATTAATTAAAAAGGATTAAATCA
1 TATTAATTAAAAAAGATTAAATCA
**
76077711 TAAAAATTAAAAAAG-TTAAATTC-
1 TATTAATTAAAAAAGATTAAA-TCA
76077734 TATTAATTAA
1 TATTAATTAA
76077744 GGGTGTTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (24 bp):
TATTAATTAAAAAAGATTAAATCA
Found at i:76078921 original size:45 final size:45
Alignment explanation
Indices: 76078676--76079064 Score: 236
Period size: 45 Copynumber: 8.6 Consensus size: 45
76078666 AGGAAATTAT
* * * *
76078676 TAAGACCATAGTTGAAAGACACTATGACACTATAC-CA-GAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGACA-T-CACGAATCAAATGAA
* * * * * *
76078721 TAAGACCATAGTTGAAAGACACTATGGCATCA-TACTAGAAACGAG
1 TAAGACCATAGTTGAAAGACACTATGACATCACGAAT-CAAATGAA
* ** * * * *
76078766 TAAGACCATAGCTGAAAGACGTTATGACATCACGATTCTATTGAG
1 TAAGACCATAGTTGAAAGACACTATGACATCACGAATCAAATGAA
* ** * * *
76078811 TAAGACCATAACTT-AAAGACGTTATGACATCACGATTC-TATCGAG
1 TAAGACCAT-AGTTGAAAGACACTATGACATCACGAATCAAAT-GAA
* * * * *
76078856 TAAGAGCATAGCTGAAAGACATTATGGCATCATGAATCAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGACATCACGAATCAAATGAA
* * * **
76078901 TAAGACCATAGTTGAAAGACACTATGGCAACAAGAAAGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGACATCACG-AATCAAATGAA
* * * **
76078947 TAAGACCATAGTTGAAAAACACTAAGGCGA-CACGACAGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGAC-ATCACGA-ATCAAATGAA
* * * * *
76078993 TTAGAACATGGTTGAAAGACACTATGACATCA--AGTCAAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGACATCACGAATC-A-AATGAA
*
76079038 TAAGACCATAGTTGAAAGACACCATGA
1 TAAGACCATAGTTGAAAGACACTATGA
76079065 AACCCTCTGA
Statistics
Matches: 276, Mismatches: 54, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
43 1 0.00
44 6 0.02
45 190 0.69
46 78 0.28
47 1 0.00
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGACATCACGAATCAAATGAA
Done.