Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 265 of 427
Found at i:76377695 original size:23 final size:25
Alignment explanation
Indices: 76377629--76377697 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
76377619 GCACTCTCTC
*
76377629 GAGCCATAGAACAAG-AGACTCACAAA
1 GAGCCATA-ATCAAGAAG-CTCACAAA
*
76377655 GAGCCATTAATCAGGAAGCTCACAAA
1 GAGCCA-TAATCAAGAAGCTCACAAA
76377681 GAGCC-T-ATCAAGAAGCT
1 GAGCCATAATCAAGAAGCT
76377698 TATTCGGGCT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.26
24 1 0.03
26 23 0.61
27 4 0.11
ACGTcount: A:0.43, C:0.23, G:0.20, T:0.13
Consensus pattern (25 bp):
GAGCCATAATCAAGAAGCTCACAAA
Found at i:76377825 original size:25 final size:25
Alignment explanation
Indices: 76377797--76377859 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 25
76377787 AGCTCCGGAT
* *
76377797 AGCCATATAACAGGAAGTTCAAGTG
1 AGCCATATAACAGGAAGCTCAAGAG
**
76377822 AGCCATAT--CAGGAAGCTCTGGAG
1 AGCCATATAACAGGAAGCTCAAGAG
*
76377845 AGCCATATAATAGGA
1 AGCCATATAACAGGA
76377860 CTCTCATGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 19 0.61
25 12 0.39
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.19
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCAAGAG
Found at i:76377847 original size:23 final size:23
Alignment explanation
Indices: 76377780--76377852 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 23
76377770 AAGAGCTAAC
* * *
76377780 ATCAGGGAGCTCCGGATAGCCAT
1 ATCAGGAAGCTCAGGAGAGCCAT
* * *
76377803 ATAACAGGAAGTTCAAGTGAGCCAT
1 AT--CAGGAAGCTCAGGAGAGCCAT
*
76377828 ATCAGGAAGCTCTGGAGAGCCAT
1 ATCAGGAAGCTCAGGAGAGCCAT
76377851 AT
1 AT
76377853 AATAGGACTC
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
23 21 0.55
25 17 0.45
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (23 bp):
ATCAGGAAGCTCAGGAGAGCCAT
Found at i:76378814 original size:43 final size:43
Alignment explanation
Indices: 76378753--76378838 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
76378743 AGTCCCCGAG
* *
76378753 ATAGCTAAATTAAGCTATTATGATCTCGGAAACATGAAAATTA
1 ATAGCTAAATTAAGCTATTACGATCTCGGAAACATAAAAATTA
* *
76378796 ATAGCTAAATTAAGCTATTACGATCTTGGAAATATAAAAATTA
1 ATAGCTAAATTAAGCTATTACGATCTCGGAAACATAAAAATTA
76378839 CTAAAAACGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.31
Consensus pattern (43 bp):
ATAGCTAAATTAAGCTATTACGATCTCGGAAACATAAAAATTA
Found at i:76382193 original size:20 final size:18
Alignment explanation
Indices: 76382167--76382216 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 18
76382157 TAGATGTGTA
76382167 TTTATAATTTTTTAGAAT
1 TTTATAATTTTTTAGAAT
*
76382185 TCATTATAAATTTTTAGAAT
1 T--TTATAATTTTTTAGAAT
76382205 TTT-TAATTTTTT
1 TTTATAATTTTTT
76382217 TATAGTCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 8 0.29
18 3 0.11
20 17 0.61
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTATAATTTTTTAGAAT
Found at i:76386543 original size:23 final size:21
Alignment explanation
Indices: 76386513--76386561 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
76386503 ACTCAATTTC
*
76386513 TTTTATTTTATTATTACATATAA
1 TTTTATTTTAAT-TTACATA-AA
*
76386536 TTTTATTTTAATTTAGATAAA
1 TTTTATTTTAATTTACATAAA
76386557 TTTTA
1 TTTTA
76386562 AATTTGGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.29
22 6 0.25
23 11 0.46
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTTATTTTAATTTACATAAA
Found at i:76388051 original size:30 final size:30
Alignment explanation
Indices: 76388017--76388077 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
76388007 ATAAGTATGT
76388017 AAATTAAAATGATTAAATTGGAGAACACAC
1 AAATTAAAATGATTAAATTGGAGAACACAC
76388047 AAATTAAAATGATTAAATTGGAGAACACAC
1 AAATTAAAATGATTAAATTGGAGAACACAC
76388077 A
1 A
76388078 CTAAGCCACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (30 bp):
AAATTAAAATGATTAAATTGGAGAACACAC
Found at i:76388264 original size:16 final size:16
Alignment explanation
Indices: 76388243--76388275 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
76388233 GATATAACAC
76388243 AAAAACTAATAGCAAA
1 AAAAACTAATAGCAAA
76388259 AAAAACTAATAGCAAA
1 AAAAACTAATAGCAAA
76388275 A
1 A
76388276 TTTTACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.70, C:0.12, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAACTAATAGCAAA
Found at i:76388305 original size:2 final size:2
Alignment explanation
Indices: 76388300--76388335 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
76388290 TCTAGTAACA
76388300 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76388336 TGATACAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76389781 original size:40 final size:35
Alignment explanation
Indices: 76389676--76389788 Score: 91
Period size: 40 Copynumber: 3.1 Consensus size: 35
76389666 CATACATTTG
* * *
76389676 ACATCGTCGGTTCATCTGACTGGCACTGGGCCAAA
1 ACATCGTCGGTTTATCCGACTAGCACTGGGCCAAA
* * * ***
76389711 ATATTGTCGGGTTATCCGACTAGTTTTGGGCTCATATTCA
1 ACATCGTCGGTTTATCCGACTAGCACTGGGC-CA-A---A
76389751 ACATCGTCGGTTTATCCGACTAGCACTGGGCGCAAA
1 ACATCGTCGGTTTATCCGACTAGCACTGGGC-CAAA
76389787 AC
1 AC
76389789 TTTGTTACAA
Statistics
Matches: 57, Mismatches: 16, Indels: 9
0.70 0.20 0.11
Matches are distributed among these distances:
35 22 0.39
36 5 0.09
37 1 0.02
39 1 0.02
40 28 0.49
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (35 bp):
ACATCGTCGGTTTATCCGACTAGCACTGGGCCAAA
Found at i:76390167 original size:2 final size:2
Alignment explanation
Indices: 76390160--76390193 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
76390150 TAAAATGAAG
76390160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76390194 TATTAGCTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76392550 original size:87 final size:87
Alignment explanation
Indices: 76392378--76392543 Score: 278
Period size: 87 Copynumber: 1.9 Consensus size: 87
76392368 GGTGCTTTTT
*
76392378 TATATGCATGATACCACATCAAAGAAGTCGACATAGATTCCGTGAGGTCTCGCTTGTCCCTTCCC
1 TATATGCATGATACCACATCAAAGAAGTCGACATAGATTCCGTGAGGTCTCGCTTGTCCATTCCC
76392443 ACAATATCCATGTTTACCATTC
66 ACAATATCCATGTTTACCATTC
* * * * *
76392465 TATATGCATGATACCGCATCAAAGAAGTCGACATAGATTCCGTGATGTCTCGTTTGTCTATTCCT
1 TATATGCATGATACCACATCAAAGAAGTCGACATAGATTCCGTGAGGTCTCGCTTGTCCATTCCC
76392530 ACAATATCCATGTT
66 ACAATATCCATGTT
76392544 AGCCATTGAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (87 bp):
TATATGCATGATACCACATCAAAGAAGTCGACATAGATTCCGTGAGGTCTCGCTTGTCCATTCCC
ACAATATCCATGTTTACCATTC
Found at i:76393756 original size:35 final size:35
Alignment explanation
Indices: 76393711--76393800 Score: 108
Period size: 35 Copynumber: 2.6 Consensus size: 35
76393701 GTGTTACTAT
* *
76393711 GTAGAACTAGTAGATCATTTCCATGATGCCACTCC
1 GTAGAGCTAGTAGACCATTTCCATGATGCCACTCC
* * * *
76393746 GTAGAGCTAGTAGACCATTTTCGTGATTCCACTTC
1 GTAGAGCTAGTAGACCATTTCCATGATGCCACTCC
* *
76393781 GTAGAGTTAGTAGGCCATTT
1 GTAGAGCTAGTAGACCATTT
76393801 ATCCAACCAA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (35 bp):
GTAGAGCTAGTAGACCATTTCCATGATGCCACTCC
Found at i:76395632 original size:40 final size:38
Alignment explanation
Indices: 76395573--76395668 Score: 122
Period size: 40 Copynumber: 2.5 Consensus size: 38
76395563 TCTCCGTCTG
* * *
76395573 ACCCAACACACCATTTGGGGATAAGATCAACCCA-CCTA
1 ACCCTACACACCATATGGGGATAAAATCAACCCATCC-A
*
76395611 GCCCTACACACACAGTATGGGGATAAAATCAACCCATCCA
1 ACCCTACACAC-CA-TATGGGGATAAAATCAACCCATCCA
76395651 ACCCTACACACCATATGG
1 ACCCTACACACCATATGG
76395669 TACTGTGAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
38 14 0.28
39 4 0.08
40 30 0.60
41 2 0.04
ACGTcount: A:0.36, C:0.34, G:0.14, T:0.16
Consensus pattern (38 bp):
ACCCTACACACCATATGGGGATAAAATCAACCCATCCA
Found at i:76396458 original size:23 final size:23
Alignment explanation
Indices: 76396427--76396548 Score: 208
Period size: 23 Copynumber: 5.3 Consensus size: 23
76396417 TTAAACGAAA
*
76396427 AACAACGATTCCTCGCTGTTTAG
1 AACATCGATTCCTCGCTGTTTAG
*
76396450 AACATCGATTCCTTGCTGTTTAG
1 AACATCGATTCCTCGCTGTTTAG
76396473 AACATCGATTCCTCGCTGTTTAG
1 AACATCGATTCCTCGCTGTTTAG
*
76396496 AACATCGATTCCTCGCTGTTTAA
1 AACATCGATTCCTCGCTGTTTAG
*
76396519 AACATCGATTCCTTGCTGTTTAG
1 AACATCGATTCCTCGCTGTTTAG
76396542 AACATCG
1 AACATCG
76396549 GTTAGTGATC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 93 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (23 bp):
AACATCGATTCCTCGCTGTTTAG
Found at i:76402593 original size:40 final size:41
Alignment explanation
Indices: 76402417--76402597 Score: 228
Period size: 40 Copynumber: 4.5 Consensus size: 41
76402407 TTCGAATGGT
* * * *
76402417 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAGTTACTAA
76402458 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCG-AGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAGTTACTAA
* * *
76402498 ATTCGGGTTAATTCCCGAAGGCATTTGTGC-AAGTTACCAAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAGTTA-CTAA
76402539 AT-CGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAGTTACTA-A
* *
76402579 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
76402598 ACAATCGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
39 2 0.02
40 87 0.70
41 35 0.28
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAAGTTACTAA
Found at i:76404745 original size:36 final size:36
Alignment explanation
Indices: 76404698--76404771 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
76404688 AGGAATTTCT
*
76404698 TGAACTCAAACAAGGTTCCATGTCGGTTACTGACTA
1 TGAACTCAAACAAGGTTCCATGTCGGTTACCGACTA
*
76404734 TGAACTCAAACAAGGTTCCATGTTGGTTACCGACTA
1 TGAACTCAAACAAGGTTCCATGTCGGTTACCGACTA
76404770 TG
1 TG
76404772 TCGGTTACCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (36 bp):
TGAACTCAAACAAGGTTCCATGTCGGTTACCGACTA
Found at i:76409737 original size:17 final size:17
Alignment explanation
Indices: 76409712--76409745 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76409702 CTAAATTAAC
*
76409712 TTTACAATCTAATCTTT
1 TTTACAATCTAAGCTTT
*
76409729 TTTATAATCTAAGCTTT
1 TTTACAATCTAAGCTTT
76409746 GTATCCATCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.15, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTACAATCTAAGCTTT
Found at i:76412046 original size:83 final size:80
Alignment explanation
Indices: 76411946--76412106 Score: 259
Period size: 83 Copynumber: 2.0 Consensus size: 80
76411936 CTCGTGTGGC
*
76411946 TCACATGGCCTAAGCAATACAAGGACACGCCCGTGTCCTATACCCGTGTGGAATAAATTCTAAAT
1 TCACATAGCCTAAGCAATACAAGGACACGCCCGTGTCCTATA-CC--GTGGAATAAATTCTAAAT
76412011 GCACACCTACAGGGGTTT
63 GCACACCTACAGGGGTTT
* *
76412029 TCACATAGCCTAAGCAATACAAGGACATGCCCGTGTCCTATACCGTGGAATAAATTCTAAGTGCA
1 TCACATAGCCTAAGCAATACAAGGACACGCCCGTGTCCTATACCGTGGAATAAATTCTAAATGCA
*
76412094 TACCTACAGGGGT
66 CACCTACAGGGGT
76412107 CTCAGGCCCG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
80 32 0.43
82 2 0.03
83 40 0.54
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (80 bp):
TCACATAGCCTAAGCAATACAAGGACACGCCCGTGTCCTATACCGTGGAATAAATTCTAAATGCA
CACCTACAGGGGTTT
Found at i:76418553 original size:2 final size:2
Alignment explanation
Indices: 76418546--76418590 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
76418536 TGAATGTTTC
* *
76418546 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76418588 TA T
1 TA T
76418591 GAATTTATCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
TA
Found at i:76420728 original size:78 final size:81
Alignment explanation
Indices: 76420609--76420790 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
76420599 TACTCGTTCA
* *
76420609 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
76420672 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
* **
76420688 CATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
76420751 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
*
76420767 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
76420791 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.54
79 27 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:76420790 original size:40 final size:40
Alignment explanation
Indices: 76420607--76420790 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
76420597 GCTACTCGTT
*
76420607 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
76420647 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
76420687 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
76420725 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76420766 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76420791 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 25 0.20
39 19 0.15
40 68 0.54
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76428810 original size:40 final size:39
Alignment explanation
Indices: 76428773--76428955 Score: 151
Period size: 40 Copynumber: 4.6 Consensus size: 39
76428763 GCTACTCGTT
*
76428773 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCG-GACTTAGCCCGGTTATAGTAACTCGCA
* *
76428813 CAAATGCCTTCGGGACTTAACCCGGATT-TAATAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
76428853 C-TATGCCTTCGGGCTTAGCCC-GTAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
76428891 CAAATGCCTTTGGATCTTAGTCCAGATT-TAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAG-CCCGGTTATAGTAAC-TCGCA
*
76428932 -AAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG
76428956 ACATCATTCG
Statistics
Matches: 113, Mismatches: 20, Indels: 21
0.73 0.13 0.14
Matches are distributed among these distances:
36 1 0.01
37 1 0.01
38 21 0.19
39 20 0.18
40 57 0.50
41 12 0.11
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:76433011 original size:35 final size:35
Alignment explanation
Indices: 76432985--76433250 Score: 313
Period size: 35 Copynumber: 7.6 Consensus size: 35
76432975 CATGGCAAAG
76432985 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* *
76433020 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * *
76433055 TGTGAAACATAGGTAGGGTATCATCCATATTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* *
76433090 TGTGAAACGTAGGTATGGTAATAAT-CATACCGAGT
1 TGTGAAACGTAGGTATGGT-ATCATCCATACTGAGT
* * * *
76433125 TGTTAAATGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* *
76433160 TGTGAAACGTA-GTAATAGTATTATCCATACTGAGT
1 TGTGAAACGTAGGT-ATGGTATCATCCATACTGAGT
** * * *
76433195 TAAGAAACGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATCAT-CCATACTGAGT
*
76433230 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
76433251 TTCAATGAGG
Statistics
Matches: 195, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
34 6 0.03
35 183 0.94
36 6 0.03
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.32
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
Found at i:76433154 original size:105 final size:105
Alignment explanation
Indices: 76432985--76433251 Score: 358
Period size: 105 Copynumber: 2.5 Consensus size: 105
76432975 CATGGCAAAG
* * *
76432985 TGTGAAACGTAGGTATGGT-ATCATCCATACTGAGTTGTGAAACGTAGGTATGGTATTAACCATA
1 TGTGAAACGTAGGTATGGTAATAAT-CATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATA
* *
76433049 CTGAGTTGTGAAACATAGGT-AGGGTATCATCCATATTGAGT
65 CTGAGTTGTGAAACATA-GTAAGAGTATCATCCATACTGAGT
*
76433090 TGTGAAACGTAGGTATGGTAATAATCATACCGAGTTGTTAAATGTAGGTATGGTATTAACCATAC
1 TGTGAAACGTAGGTATGGTAATAATCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATAC
* * *
76433155 TGAGTTGTGAAACGTAGTAATAGTATTATCCATACTGAGT
66 TGAGTTGTGAAACATAGTAAGAGTATCATCCATACTGAGT
** * * ***
76433195 TAAGAAACGTAGGTATGGCATTTCCCATACCGAGTTGTGAAATGTAGGTATGGTATT
1 TGTGAAACGTAGGTATGGTAATAATCATACCGAGTTGTGAAATGTAGGTATGGTATT
76433252 TCAATGAGGA
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
104 2 0.01
105 137 0.96
106 4 0.03
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (105 bp):
TGTGAAACGTAGGTATGGTAATAATCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATAC
TGAGTTGTGAAACATAGTAAGAGTATCATCCATACTGAGT
Found at i:76433384 original size:31 final size:31
Alignment explanation
Indices: 76433346--76433430 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
76433336 AATAAGTAAT
76433346 CTGATCAGTGAAAAGTGGTAGCTCTAGCTAC
1 CTGATCAGTGAAAAGTGGTAGCTCTAGCTAC
* *
76433377 CTGATCAGTGAGAAGTGGTAGCTCTGGCTAC
1 CTGATCAGTGAAAAGTGGTAGCTCTAGCTAC
*
76433408 CTGATCAGTGAATAGTGGTAGCT
1 CTGATCAGTGAAAAGTGGTAGCT
76433431 TCGGCTACAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (31 bp):
CTGATCAGTGAAAAGTGGTAGCTCTAGCTAC
Found at i:76445995 original size:13 final size:13
Alignment explanation
Indices: 76445973--76446003 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
76445963 ATGCAGGGGA
*
76445973 CACACGACCATGC
1 CACACAACCATGC
76445986 CACACAACCATGC
1 CACACAACCATGC
76445999 CACAC
1 CACAC
76446004 GCCTATGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.48, G:0.10, T:0.06
Consensus pattern (13 bp):
CACACAACCATGC
Found at i:76449336 original size:27 final size:28
Alignment explanation
Indices: 76449294--76449366 Score: 105
Period size: 27 Copynumber: 2.7 Consensus size: 28
76449284 GAATTTAGTG
*
76449294 TTAAT-TGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCCGTAGCCCATATCAATA
*
76449321 TTAATCTGGGCC-TAGCCCATATCAGTA
1 TTAATCTGGGCCGTAGCCCATATCAATA
*
76449348 TCAATCTGGGCCGTAGCCC
1 TTAATCTGGGCCGTAGCCC
76449367 TATACAAGTC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
27 30 0.71
28 12 0.29
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (28 bp):
TTAATCTGGGCCGTAGCCCATATCAATA
Found at i:76449956 original size:15 final size:15
Alignment explanation
Indices: 76449936--76449968 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
76449926 AAGTGCATGA
76449936 AATTGCGCACTCTAC
1 AATTGCGCACTCTAC
76449951 AATTGCGCACTCTAC
1 AATTGCGCACTCTAC
76449966 AAT
1 AAT
76449969 CATACTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.27
Consensus pattern (15 bp):
AATTGCGCACTCTAC
Found at i:76454075 original size:41 final size:40
Alignment explanation
Indices: 76454024--76454163 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
76454014 AGCTATTATA
*
76454024 ATCTCGCACACTAAGTGCCTTTCATAGCCGAAGCTATCTC-
1 ATCTCGCACACTAAGTGCCTTT-ATAGCCGAAACTATCTCG
* * * *
76454064 AGTCTCACACACTAAGTGCCATATATAGCCGAATCTATTTCG
1 A-TCTCGCACACTAAGTGCC-TTTATAGCCGAAACTATCTCG
*
76454106 AT-TCGCACACTAAGTGCTTTATATAGCCGAAACTATCTCG
1 ATCTCGCACACTAAGTGCCTT-TATAGCCGAAACTATCTCG
*
76454146 AT-ACGCACACTAAGTGCC
1 ATCTCGCACACTAAGTGCC
76454164 AAACGAAATT
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 48 0.56
41 33 0.39
42 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (40 bp):
ATCTCGCACACTAAGTGCCTTTATAGCCGAAACTATCTCG
Found at i:76460972 original size:41 final size:41
Alignment explanation
Indices: 76460915--76461138 Score: 249
Period size: 41 Copynumber: 5.5 Consensus size: 41
76460905 TTAGTGATAT
* * *
76460915 TCAGGCTT-TATGCCTAGTAGGCTTTATGCTGGTGAATTATA
1 TCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * *
76460956 TCAGGCTT-TATGCCTAGCAGGCCTTATGCCGGTGAATTACA
1 TCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
76460997 TCAGGCTTATTGGCTAGCAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
*
76461038 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * * * **
76461079 TCAGTCCTATTGCCTAGCAGGCTCTGTGTTGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
76461120 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
76461139 AATTTTATGT
Statistics
Matches: 161, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
40 2 0.01
41 158 0.98
42 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.37
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:76461528 original size:2 final size:2
Alignment explanation
Indices: 76461521--76461561 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
76461511 TGGAAATGTC
76461521 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76461562 GAAATTGATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:76462257 original size:17 final size:17
Alignment explanation
Indices: 76462231--76462264 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76462221 TTTAAATTAT
* *
76462231 TTTTGTTTTGTTTGTAA
1 TTTTGATTTGTGTGTAA
76462248 TTTTGATTTGTGTGTAA
1 TTTTGATTTGTGTGTAA
76462265 GTGAAATTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.65
Consensus pattern (17 bp):
TTTTGATTTGTGTGTAA
Found at i:76468072 original size:40 final size:40
Alignment explanation
Indices: 76468013--76468159 Score: 141
Period size: 40 Copynumber: 3.7 Consensus size: 40
76468003 CAATTGAATG
* * * *
76468013 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAGCT
* * * **
76468053 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAGCT
* ** * ** *
76468093 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAGCT
*
76468133 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
76468160 CGTGCACGTG
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAGCT
Found at i:76468160 original size:40 final size:40
Alignment explanation
Indices: 76468054--76468180 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
76468044 CTGGAAGTTA
* * *
76468054 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CG-GC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCGTTC
76468092 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
* * *
76468134 TATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
76468174 TATCCGG
1 TATCCGG
76468181 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.90
41 2 0.03
42 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
Found at i:76472054 original size:41 final size:41
Alignment explanation
Indices: 76472009--76472232 Score: 285
Period size: 41 Copynumber: 5.5 Consensus size: 41
76471999 TTAGTGATAT
* *
76472009 TCAGGCTT-TATGCCTAGCAGGCTTTATGCTGGTGAATTATA
1 TCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
76472050 TCAGGCTTATTGCCTAGCAGGCTTTATGCCAGTGAATTATA
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
76472091 TCAGGCTTATTGCCTAGAAGGCTTTATGCCGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
76472132 TCAGGCTTATTGCCTAGCAGGCTTTATGCAGGTGTATTATT
1 TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * *
76472173 TCAGGCCTATTGCCTAGCAAGCTCTT-TGTCGGTGTATTATA
1 TCAGGCTTATTGCCTAGCAGGCT-TTATGCCGGTGTATTATA
76472214 -CTAGGCTT-TATGCCTAGCA
1 TC-AGGCTTAT-TGCCTAGCA
76472233 AATTTTATGT
Statistics
Matches: 165, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
40 2 0.01
41 160 0.97
42 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (41 bp):
TCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:76476863 original size:16 final size:16
Alignment explanation
Indices: 76476842--76476926 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 16
76476832 CATTAAGCCC
76476842 CCCAAAAAAAACCTAA
1 CCCAAAAAAAACCTAA
*
76476858 CCCAAAAAAAAAC-AA
1 CCCAAAAAAAACCTAA
** *
76476873 -AGAAAAAAAA--GAA
1 CCCAAAAAAAACCTAA
*
76476886 ---AAAGAAAAACCTAC
1 CCCAAA-AAAAACCTAA
76476900 CCCAAAAAAAACCTAA
1 CCCAAAAAAAACCTAA
76476916 CCCAAAAAAAA
1 CCCAAAAAAAA
76476927 AAAGAAGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
13 2 0.04
14 9 0.16
15 2 0.04
16 32 0.57
17 3 0.05
ACGTcount: A:0.69, C:0.24, G:0.04, T:0.04
Consensus pattern (16 bp):
CCCAAAAAAAACCTAA
Found at i:76476879 original size:15 final size:15
Alignment explanation
Indices: 76476861--76476894 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76476851 AACCTAACCC
*
76476861 AAAAAAAA-ACAAAG
1 AAAAAAAAGAAAAAG
76476875 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
76476890 AAAAA
1 AAAAA
76476895 CCTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:76476923 original size:42 final size:41
Alignment explanation
Indices: 76476848--76476938 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 41
76476838 GCCCCCCAAA
*
76476848 AAAAACCTAACCCAAAAAAAAACAAAGAAAAAAAAGAAAAAG
1 AAAAACCTAACCCAAAAAAAAACAAACAAAAAAAA-AAAAAG
* * *
76476890 AAAAACCTACCCCAAAAAAAACCTAACCCAAAAAAAAAAAGAAG
1 AAAAACCTAACCCAAAAAAAAAC-AA-ACAAAAAAAAAAA-AAG
76476934 AAAAA
1 AAAAA
76476939 AGAAAAACCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 21 0.50
43 5 0.12
44 16 0.38
ACGTcount: A:0.73, C:0.19, G:0.05, T:0.03
Consensus pattern (41 bp):
AAAAACCTAACCCAAAAAAAAACAAACAAAAAAAAAAAAAG
Found at i:76476927 original size:17 final size:16
Alignment explanation
Indices: 76476885--76476927 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
76476875 AAAAAAAAGA
76476885 AAAAGAAAAACCTACCC
1 AAAA-AAAAACCTACCC
*
76476902 CAAAAAAAACCTAACCC
1 AAAAAAAAACCT-ACCC
76476919 AAAAAAAAA
1 AAAAAAAAA
76476928 AAGAAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.67, C:0.26, G:0.02, T:0.05
Consensus pattern (16 bp):
AAAAAAAAACCTACCC
Found at i:76484821 original size:70 final size:69
Alignment explanation
Indices: 76484702--76485474 Score: 489
Period size: 72 Copynumber: 11.2 Consensus size: 69
76484692 GAGTTAAGCC
*
76484702 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
76484766 TGAGGTA
63 TGAGGTA
* * ** * *
76484773 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
76484838 AGGTA
65 AGGTA
* *
76484843 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
76484908 GAGGTA
64 GAGGTA
* * * ** * * *
76484914 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
76484970 ---A
66 GGTA
*** ** *
76484971 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
76485032 GGTA
66 GGTA
* * *
76485036 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
76485101 TGAGGTA
63 TGAGGTA
* * ** ** * * * *
76485108 TTTTCAATTTCTGTTTTCAATTTACGTTGTTCAATAATCAACTCATATTGCGAGAGATGAGTTGA
1 TTTTCAATTTTTGTTTTAAATCAAC-----TC-AT-AT-TGC-GAGA--G-GTGAGTTGAG----
** * *
76485173 GCCTCAAGACACGTTGAGGTA
50 -CCTCGGGGCACGCTGAGGTA
* *
76485194 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
76485258 GAGGTA
64 GAGGTA
* * * ** * * *
76485264 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
76485320 ---A
66 GGTA
*** ** *
76485321 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
76485382 GGTA
66 GGTA
* * *
76485386 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
76485451 TGAGGTA
63 TGAGGTA
*
76485458 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
76485475 CAATTTACGT
Statistics
Matches: 540, Mismatches: 101, Indels: 123
0.71 0.13 0.16
Matches are distributed among these distances:
53 62 0.11
57 18 0.03
60 4 0.01
62 4 0.01
65 10 0.02
66 8 0.01
68 31 0.06
69 37 0.07
70 98 0.18
71 79 0.15
72 117 0.22
74 2 0.00
75 2 0.00
76 10 0.02
77 1 0.00
78 2 0.00
79 2 0.00
80 2 0.00
81 10 0.02
82 2 0.00
83 2 0.00
86 32 0.06
88 5 0.01
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.39
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:76484896 original size:71 final size:69
Alignment explanation
Indices: 76484702--76484965 Score: 332
Period size: 71 Copynumber: 3.7 Consensus size: 69
76484692 GAGTTAAGCC
* *
76484702 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
76484767 GAGGTAT
63 GAGGTAT
* * ** * *
76484774 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
76484838 AGGTAT
64 AGGTAT
76484844 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
76484909 AGGTAT
64 AGGTAT
* * ** * *
76484915 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
76484966 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 60 0.36
72 16 0.10
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:76485010 original size:122 final size:124
Alignment explanation
Indices: 76484844--76485090 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
76484834 GTTGAGGTAT
76484844 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
76484909 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
76484965 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
76485030 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
76485090 T
1 T
76485091 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 12 0.11
122 60 0.53
123 1 0.01
124 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:76485055 original size:263 final size:257
Alignment explanation
Indices: 76484535--76485127 Score: 1042
Period size: 263 Copynumber: 2.3 Consensus size: 257
76484525 TTTCAAGGAA
*
76484535 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
76484600 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
76484665 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
76484730 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
76484792 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
76484857 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
76484922 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
76484987 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
76485052 TTT
255 TTT
* * * * * *
76485055 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
76485120 GTTTTCAA
64 GTTTTCAA
76485128 TTTACGTTGT
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 120 0.38
260 2 0.01
262 4 0.01
263 131 0.41
265 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:76485307 original size:68 final size:70
Alignment explanation
Indices: 76485143--76485315 Score: 233
Period size: 71 Copynumber: 2.5 Consensus size: 70
76485133 GTTGTTCAAT
* * *
76485143 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATGT
76485208 TTTCAA
66 TTT-AA
* * * *
76485214 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAGTTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATGT
76485278 TTT-A
66 TTTAA
** *
76485282 AATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
76485316 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
68 31 0.34
70 27 0.30
71 33 0.36
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (70 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATGT
TTTAA
Found at i:76485433 original size:350 final size:351
Alignment explanation
Indices: 76484791--76485513 Score: 1430
Period size: 350 Copynumber: 2.1 Consensus size: 351
76484781 TTTTGTGTTT
76484791 TAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 TAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
76484856 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
66 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
76484921 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
76484986 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
196 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
76485051 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
261 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
76485116 TTCTGTTTTCAATTTACGTTGTTCAA
326 TTCTGTTTTCAATTTACGTTGTTCAA
76485142 TAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 TAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
76485207 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAG
66 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
76485271 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
76485336 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
196 ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
76485401 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
261 TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
76485466 TTCTGTTTTCAATTTACGTTGTTCAA
326 TTCTGTTTTCAATTTACGTTGTTCAA
*
76485492 GAATCAACTCATATTGCGAGAG
1 TAATCAACTCATATTGCGAGAG
76485514 GTAGGTTGAA
Statistics
Matches: 371, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
350 264 0.71
351 107 0.29
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.37
Consensus pattern (351 bp):
TAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTG
TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAAT
TTCTGTTTTCAATTTACGTTGTTCAA
Found at i:76485811 original size:74 final size:76
Alignment explanation
Indices: 76485705--76485849 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
76485695 TTTTTGCCTT
*
76485705 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
76485767 CAATTTCTATTG
65 CAATTTCTATTG
* * *
76485779 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
76485844 AATTTC
66 AATTTC
76485850 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTATTG
Found at i:76485817 original size:165 final size:166
Alignment explanation
Indices: 76485545--76486023 Score: 698
Period size: 165 Copynumber: 2.9 Consensus size: 166
76485535 CTACTTTTTC
76485545 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * *
76485610 GTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
* *
76485675 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
76485710 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * *
76485775 ATTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
76485840 TTTCAATTTCCATTTTTCAATTTCTGCATTTCAAAAAAAAAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTC------AAAA
*
76485882 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * ** * *
76485947 GTTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
76486008 TTTCAATTTCTGTTTT
131 TTTCAATTTCCGTTTT
76486024 CAAAAAATCA
Statistics
Matches: 285, Mismatches: 22, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
165 153 0.54
168 27 0.09
170 34 0.12
172 71 0.25
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (166 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
Found at i:76485964 original size:72 final size:73
Alignment explanation
Indices: 76485880--76486383 Score: 418
Period size: 79 Copynumber: 6.5 Consensus size: 73
76485870 TCAAAAAAAA
*
76485880 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
76485945 CTGTTTTC
66 CTGTTTTC
* * ** ** *
76485953 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
76486017 CTGTTTTC
66 CTGTTTTC
* * * ** *
76486025 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
76486090 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
76486101 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
76486166 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
76486180 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTC-
* *
76486244 AAATTGTTTTTCAAATTCTGTTTT
61 -AA-----TTTC----TGT-TTTC
* * * ** *
76486268 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTATTTTCAAT
76486333 TTCTGTTTTTTTC
64 TTCTG---TTTTC
76486346 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
76486384 TTTTTAATTT
Statistics
Matches: 344, Mismatches: 54, Indels: 59
0.75 0.12 0.13
Matches are distributed among these distances:
72 64 0.19
73 33 0.10
75 21 0.06
76 5 0.01
77 48 0.14
78 6 0.02
79 72 0.21
80 34 0.10
84 3 0.01
85 4 0.01
87 49 0.14
88 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:76486121 original size:77 final size:75
Alignment explanation
Indices: 76485879--76486383 Score: 391
Period size: 72 Copynumber: 6.5 Consensus size: 75
76485869 TTCAAAAAAA
* ** *
76485879 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA-CGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAGCGCTGAGGTATTTTCAAT
*
76485943 TTCTGTTTTC
66 TTCTATTTTC
* * ** ** * *
76485953 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG-ACA-CGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCAGCGCTGAGGTATTTTCAA
*
76486014 TTTCTGTTTTC
65 TTTCTATTTTC
* * *
76486025 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA-GCGCTGAGGTATTTTCAA
76486089 TTTCTATCTTTC
65 TTTCTAT-TTTC
* * * *
76486101 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCA-GCGCTGAGGTA--TTTT
*
76486165 CAATTTATATTTTTC
62 CAATTTCTA-TTTTC
* * * * *
76486180 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACA-TG-TCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCT-CAGCGCT-GAGGTATTTTC
* *
76486243 AAAATTGT-TTTTC
63 -AATTTCTATTTTC
* *
76486256 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA-GCGCTGA
* *
76486321 GCTATTTTCAATTTCTGTTTTTTTC
54 GGTATTTTCAATTTC---TATTTTC
76486346 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
76486384 TTTTTAATTT
Statistics
Matches: 350, Mismatches: 46, Indels: 64
0.76 0.10 0.14
Matches are distributed among these distances:
72 63 0.18
73 34 0.10
75 21 0.06
76 12 0.03
77 52 0.15
78 6 0.02
79 61 0.17
80 34 0.10
81 2 0.01
85 2 0.01
86 7 0.02
87 47 0.13
88 1 0.00
89 3 0.01
90 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAGCGCTGAGGTATTTTCAAT
TTCTATTTTC
Found at i:76486203 original size:79 final size:76
Alignment explanation
Indices: 76485879--76486591 Score: 439
Period size: 87 Copynumber: 9.0 Consensus size: 76
76485869 TTCAAAAAAA
** *
76485879 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
76485942 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * *
76485953 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
76486014 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
76486025 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
76486089 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
76486101 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
76486166 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
76486180 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
**
76486244 AAAT-TGTTTTTC
65 ATTTCTG-TTTTC
* ** * **
76486256 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
76486321 GCTATTTTCAATTTCTGTTTTTTTC
55 GGTATTTTCAATTTCTG---TTTTC
* * * * * *
76486346 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
76486410 AGTCTTTTAATTTCTGTTTTTC
58 A-T-TTTCAATTTCTG-TTTTC
**
76486432 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGA-CCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
76486492 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
76486506 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
76486571 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
76486592 TAATGTCTGT
Statistics
Matches: 502, Mismatches: 81, Indels: 99
0.74 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 31 0.06
74 14 0.03
75 24 0.05
76 15 0.03
77 58 0.12
78 2 0.00
79 70 0.14
80 31 0.06
81 1 0.00
82 3 0.01
83 30 0.06
84 6 0.01
86 13 0.03
87 94 0.19
88 37 0.07
89 3 0.01
90 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:76486288 original size:243 final size:247
Alignment explanation
Indices: 76486007--76486586 Score: 775
Period size: 250 Copynumber: 2.4 Consensus size: 247
76485997 CGTTGAGGTA
* * * *
76486007 TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
76486072 CGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
66 CGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
*
76486136 GC-TTCAGA-TC-AC-ACA-CTGAGGTA-TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCA
131 GCTTTCA-ATTCTACGACAGCTGAGGTAGTCTTTT-AATTTATATTTTTC--AAAAATCAACTCA
* ** * * *
76486195 CATTGCGAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAAT-TGT
192 CATTGCGAGAGGTGAGTTGA-CCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
*
76486251 TTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* * *
76486315 TGCTGAGCTATTTTCAATTTCTGTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
66 CGCTGAGCTATTTTCAATTTC--TATCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
* * * * * * *
76486380 GAGCTTTTTAATTTCTGCGAGAGTTGAGTTAGTCTTTTAATTTCTGTTTTTCAAAAATCAACTCA
129 GAGC-TTTCAA-TTCTACGACAGCTGAGGTAGTCTTTTAATTTATATTTTTCAAAAATCAACTCA
*
76486445 TATTGCGAGAGGTGAGTTGACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
192 CATTGCGAGAGGTGAGTTGACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
* **
76486501 TTTTCAAGTTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
76486565 CGCTGAGCTATTTTCAATTTCT
66 CGCTGAGCTATTTTCAATTTCT
76486587 GTTTTTAATG
Statistics
Matches: 295, Mismatches: 28, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
243 62 0.21
244 17 0.06
245 13 0.04
246 30 0.10
247 1 0.00
248 4 0.01
249 34 0.12
250 109 0.37
251 2 0.01
252 18 0.06
253 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (247 bp):
TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
CGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
GCTTTCAATTCTACGACAGCTGAGGTAGTCTTTTAATTTATATTTTTCAAAAATCAACTCACATT
GCGAGAGGTGAGTTGACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
Found at i:76486401 original size:30 final size:29
Alignment explanation
Indices: 76486365--76486425 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 29
76486355 CAACTCATAT
76486365 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTT-AGTC-TTTTAATTTC
*
76486395 TGCGAGAGTTGAGTTAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTAGTCTTTTAATTTC
76486424 TG
1 TG
76486426 TTTTTCAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.43
Consensus pattern (29 bp):
TGCGAGAGGTGAGTTAGTCTTTTAATTTC
Found at i:76487256 original size:10 final size:10
Alignment explanation
Indices: 76487237--76487270 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
76487227 AACCTAACCC
76487237 AAAA-AAAAA
1 AAAAGAAAAA
76487246 AAAAGAAAAA
1 AAAAGAAAAA
76487256 AAAAGAAAAA
1 AAAAGAAAAA
76487266 GAAAA
1 -AAAA
76487271 ACCTACCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 4 0.17
10 15 0.65
11 4 0.17
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:76487256 original size:16 final size:16
Alignment explanation
Indices: 76487237--76487271 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
76487227 AACCTAACCC
76487237 AAAAAAAAAAAAAGAA
1 AAAAAAAAAAAAAGAA
*
76487253 AAAAAAAGAAAAAGAA
1 AAAAAAAAAAAAAGAA
76487269 AAA
1 AAA
76487272 CCTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAGAA
Found at i:76487286 original size:16 final size:16
Alignment explanation
Indices: 76487267--76487302 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
76487257 AAAGAAAAAG
76487267 AAAAACCT-ACCCCAA
1 AAAAACCTAACCCCAA
76487282 AAAAACCTAACCCCAA
1 AAAAACCTAACCCCAA
76487298 AAAAA
1 AAAAA
76487303 AAAAAGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.61, C:0.33, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACCTAACCCCAA
Found at i:76488137 original size:37 final size:37
Alignment explanation
Indices: 76488095--76488194 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 37
76488085 CTAATATTTT
76488095 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
76488132 CTTTTATTATATGCATA-TATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATATTAT-TAT-TATTATTATGTACATA
*
76488173 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
76488195 CCAAATATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 16 0.30
38 7 0.13
39 6 0.11
40 11 0.21
41 11 0.21
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:76501911 original size:42 final size:43
Alignment explanation
Indices: 76501831--76501911 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
76501821 CCCAGACGTG
* *
76501831 GTCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAGA
1 GTCTTACACGAAATCAAATATTGATGCCACTGTCCCAGACAGA
*
76501874 GTCTTACACGAAATCAAATA-TGATGTCGA-TGTCCCAGA
1 GTCTTACACGAAATCAAATATTGATG-CCACTGTCCCAGA
76501912 TATGCTCTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 14 0.41
43 20 0.59
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATTGATGCCACTGTCCCAGACAGA
Found at i:76501921 original size:42 final size:43
Alignment explanation
Indices: 76501832--76501925 Score: 104
Period size: 42 Copynumber: 2.2 Consensus size: 43
76501822 CCAGACGTGG
* * *
76501832 TCTTACATGTAATCAAATATTGATGCCACTGTCCCAGACAGAG
1 TCTTACACGAAATCAAATATTGATGCCACTGTCCCAGACAGAC
* *
76501875 TCTTACACGAAATCAAATA-TGATGTCGA-TGTCCCAGATATG-C
1 TCTTACACGAAATCAAATATTGATG-CCACTGTCCCAGACA-GAC
76501917 TCTTACACG
1 TCTTACACG
76501926 TATATCATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
42 24 0.55
43 20 0.45
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
TCTTACACGAAATCAAATATTGATGCCACTGTCCCAGACAGAC
Found at i:76512902 original size:45 final size:45
Alignment explanation
Indices: 76512778--76512938 Score: 191
Period size: 45 Copynumber: 3.6 Consensus size: 45
76512768 GTTATACACC
* ** * *
76512778 AAGATGAGTAAGACCACATTTGAAATATGTTATGGTATCATGATA
1 AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
* * * * *
76512823 AAGATGAGTGAGA-TATAGCTAAAAAATGCTATGGCATCATGATA
1 AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
*
76512867 AAGATGAGTACGACCATAGCTGAAAGATGTTATGGCATCATGATA
1 AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
*
76512912 TAA-ATGAGTAAGGCCATAGCTGAAAGA
1 -AAGATGAGTAAGACCATAGCTGAAAGA
76512939 CGCTATGGGC
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
44 34 0.35
45 61 0.63
46 2 0.02
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (45 bp):
AAGATGAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATA
Found at i:76516135 original size:20 final size:20
Alignment explanation
Indices: 76516092--76516135 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
76516082 TCCTAATTTT
* *
76516092 ATTTGATTCCAATCAATTTT
1 ATTTGATTCCAATCAAATTG
**
76516112 ATTTGATTTTAATCAAATTG
1 ATTTGATTCCAATCAAATTG
76516132 ATTT
1 ATTT
76516136 AATTGCTCCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATTG
Found at i:76516608 original size:22 final size:23
Alignment explanation
Indices: 76516583--76516632 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
76516573 AATTTATTAT
76516583 TTTATTTTATTT-TATATAAATA
1 TTTATTTTATTTATATATAAATA
* *
76516605 TTTA-TTTATTTATATTTATATA
1 TTTATTTTATTTATATATAAATA
76516627 TTTATT
1 TTTATT
76516633 CGCTAACGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 16 0.67
23 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTATTTTATTTATATATAAATA
Found at i:76516621 original size:14 final size:14
Alignment explanation
Indices: 76516574--76516631 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
76516564 AAATTATTCA
76516574 ATTTATTATTT-TAT
1 ATTTA-TATTTATAT
76516588 -TTTAT-TTTATAT
1 ATTTATATTTATAT
* *
76516600 A--AATATTTATTT
1 ATTTATATTTATAT
76516612 ATTTATATTTATAT
1 ATTTATATTTATAT
76516626 ATTTAT
1 ATTTAT
76516632 TCGCTAACGT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
11 5 0.14
12 11 0.31
13 4 0.11
14 15 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTATATTTATAT
Found at i:76516632 original size:26 final size:27
Alignment explanation
Indices: 76516574--76516632 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
76516564 AAATTATTCA
76516574 ATTTA-TTATTTTATTTTATTTTATAT
1 ATTTATTTATTTTATTTTATTTTATAT
**
76516600 AAATATTTA-TTTA-TTTATATTTATAT
1 ATTTATTTATTTTATTTTAT-TTTATAT
76516626 ATTTATT
1 ATTTATT
76516633 CGCTAACGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (27 bp):
ATTTATTTATTTTATTTTATTTTATAT
Found at i:76516956 original size:140 final size:140
Alignment explanation
Indices: 76516704--76517177 Score: 518
Period size: 140 Copynumber: 3.4 Consensus size: 140
76516694 CCAGATAGAT
* * *
76516704 TTGGATCTT-GAACTTGAGAGCTAAGAGGTTGCACTTAGTTAAAACAAAAATATTAGTATATAAA
1 TTGGATCTTAG-ACTTGAGAGTTAAGAGGTTACACTTGGTTAAAACAAAAATATTAGTATATAAA
* * ** * * *
76516768 GTGCAATTACAAAATTTGCACAAGTTAGTTGGATAAGTAGTTACATTTGAAGTTTGACTTTGGGC
65 GTGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGACCTTGGAC
76516833 TTAAAAATCTA
130 TTAAAAATCTA
* ** *
76516844 TTGGATCTTAGACTTGAGAGTTAAGAGGCTACAGGTGGTTAAAACAAAAATACTAGTATATAAAG
1 TTGGATCTTAGACTTGAGAGTTAAGAGGTTACACTTGGTTAAAACAAAAATATTAGTATATAAAG
*
76516909 TGTAGTTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGACCTTGGACT
66 TGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGACCTTGGACT
* * * *
76516974 TCAGAATTTG
131 TAAAAATCTA
* * * * * * * *
76516984 TTAGAATCTTAGATTTAAGAGTTGAGAGGTTAAATTTGTTTAAAACAAAAATATTAGTATATGAA
1 TT-GGATCTTAGACTTGAGAGTTAAGAGGTTACACTTGGTTAAAACAAAAATATTAGTATATAAA
** * *
76517049 GTGTAAAATTACAAAAATTGCATGAACTAGTTGAATAAGTAGTTACATTTGAAGTTGGATCTTGG
65 GTGT--AATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGACCTTGG
* * *
76517114 ACTTCAAAATGTG
128 ACTTAAAAATCTA
** * * * * * * *
76517127 TTAAATTTTGGACTTGAAAATTGAGAGGCTGCACTTGGTTAAAACAAAAAT
1 TTGGATCTTAGACTTGAGAGTTAAGAGGTTACACTTGGTTAAAACAAAAAT
76517178 TTTATAAATA
Statistics
Matches: 281, Mismatches: 49, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
140 121 0.43
141 56 0.20
142 37 0.13
143 67 0.24
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.34
Consensus pattern (140 bp):
TTGGATCTTAGACTTGAGAGTTAAGAGGTTACACTTGGTTAAAACAAAAATATTAGTATATAAAG
TGTAATTACAAAAATTGCATGAGTTAGTTGAATAAGTAGTTACATTTGAAGTTTGACCTTGGACT
TAAAAATCTA
Found at i:76518485 original size:21 final size:22
Alignment explanation
Indices: 76518444--76518492 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
76518434 ATAAATGGAT
*
76518444 TAAATAAAATTTTCTTTAATAA
1 TAAATAAAATTTTCATTAATAA
*
76518466 TAAATTAAATTTT-ATTAATAA
1 TAAATAAAATTTTCATTAATAA
76518487 TAAATA
1 TAAATA
76518493 TCACTGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAAATAAAATTTTCATTAATAA
Found at i:76532243 original size:5 final size:5
Alignment explanation
Indices: 76532233--76532258 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
76532223 TAAAACAATC
76532233 ACAAA ACAAA ACAAA ACAAA ACAAA A
1 ACAAA ACAAA ACAAA ACAAA ACAAA A
76532259 AAATGTCTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (5 bp):
ACAAA
Found at i:76535272 original size:9 final size:9
Alignment explanation
Indices: 76535214--76535356 Score: 69
Period size: 10 Copynumber: 15.6 Consensus size: 9
76535204 GATGTGGCAA
76535214 AAAAATTAT
1 AAAAATTAT
76535223 AAAAA--AT
1 AAAAATTAT
*
76535230 AAAAATAAAT
1 AAAAAT-TAT
*
76535240 AAAAGTTATT
1 AAAAATTA-T
**
76535250 AAACTTTAAT
1 AAAAATT-AT
76535260 AAAAATTAT
1 AAAAATTAT
76535269 AAAATATT-T
1 AAAA-ATTAT
*
76535278 AAAATTTACT
1 AAAAATTA-T
*
76535288 AAAAATTAA
1 AAAAATTAT
*
76535297 AAAACAATAT
1 AAAA-ATTAT
**
76535307 AAAAATCGT
1 AAAAATTAT
*
76535316 AAAAAATAT
1 AAAAATTAT
*
76535325 AAAAA-AAT
1 AAAAATTAT
* *
76535333 TAAAATTTT
1 AAAAATTAT
*
76535342 ATAAAATCAT
1 A-AAAATTAT
76535352 AAAAA
1 AAAAA
76535357 AAATTATAAT
Statistics
Matches: 99, Mismatches: 24, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
7 7 0.07
8 8 0.08
9 39 0.39
10 44 0.44
11 1 0.01
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:76535308 original size:38 final size:37
Alignment explanation
Indices: 76535214--76535310 Score: 97
Period size: 38 Copynumber: 2.6 Consensus size: 37
76535204 GATGTGGCAA
* *
76535214 AAAAATTATAAAAAATA-AAAATAAATAAAAGTTATT
1 AAAAATTAAAAAAAATATAAAATAAATAAAAGTTACT
** * ** *
76535250 AAACTTTAATAAAAATTATAAAATATTTAAAATTTACT
1 AAAAATTAA-AAAAAATATAAAATAAATAAAAGTTACT
76535288 AAAAATTAAAAAACAATATAAAA
1 AAAAATTAAAAAA-AATATAAAA
76535311 ATCGTAAAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
36 6 0.13
37 11 0.23
38 30 0.64
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (37 bp):
AAAAATTAAAAAAAATATAAAATAAATAAAAGTTACT
Found at i:76535346 original size:28 final size:26
Alignment explanation
Indices: 76535247--76535362 Score: 79
Period size: 28 Copynumber: 4.2 Consensus size: 26
76535237 AATAAAAGTT
* * *
76535247 ATTAAACTTTAATAAAAATTATAAAATA
1 ATTAAAATTT-ATAAAAAATA-AAAAAA
* *
76535275 TTTAAAATTTACTAAAAATTAAAAAACA
1 ATTAAAATTTA-TAAAAAATAAAAAA-A
* **
76535303 ATATAAAAATCGTAAAAAATATAAAAAA
1 AT-TAAAATTTATAAAAAATA-AAAAAA
*
76535331 ATTAAAATTTTATAAAATCATAAAAAAA
1 ATTAAAA-TTTATAAAA-AATAAAAAAA
76535359 ATTA
1 ATTA
76535363 TAATATGCAT
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
27 10 0.14
28 46 0.66
29 14 0.20
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (26 bp):
ATTAAAATTTATAAAAAATAAAAAAA
Found at i:76535356 original size:56 final size:57
Alignment explanation
Indices: 76535259--76535365 Score: 130
Period size: 56 Copynumber: 1.9 Consensus size: 57
76535249 TAAACTTTAA
* * * * *
76535259 TAAAAATTATAAAATATTTAAAATTTACTAAAAATTAAAAAACAA-TATAAAAATCG
1 TAAAAAATATAAAAAAATTAAAATTTACTAAAAATCAAAAAAAAATTATAAAAATCG
76535315 TAAAAAATATAAAAAAATTAAAATTT--TATAAAATCATAAAAAAAATTATAA
1 TAAAAAATATAAAAAAATTAAAATTTACTA-AAAATCA-AAAAAAAATTATAA
76535366 TATGCATCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
54 2 0.05
55 6 0.14
56 30 0.70
57 5 0.12
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (57 bp):
TAAAAAATATAAAAAAATTAAAATTTACTAAAAATCAAAAAAAAATTATAAAAATCG
Found at i:76535594 original size:38 final size:38
Alignment explanation
Indices: 76535552--76535633 Score: 96
Period size: 38 Copynumber: 2.2 Consensus size: 38
76535542 TGGTATGATA
* *
76535552 ACTTTTATAATTCTT-TTACGAATTT-TATATTTCTTTAT
1 ACTTTTATAATT-TTCTTACGACTTTATA-AATTCTTTAT
*
76535590 ACTTTTATCATTTTCTTACGACTTTATAAATTCTTTAT
1 ACTTTTATAATTTTCTTACGACTTTATAAATTCTTTAT
*
76535628 ATTTTT
1 ACTTTT
76535634 TTCTATATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
37 2 0.05
38 34 0.89
39 2 0.05
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (38 bp):
ACTTTTATAATTTTCTTACGACTTTATAAATTCTTTAT
Found at i:76535613 original size:20 final size:19
Alignment explanation
Indices: 76535552--76535614 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
76535542 TGGTATGATA
76535552 ACTTTTATAATTCTT-TTACG
1 ACTTTTAT-ATT-TTCTTACG
* *
76535572 AATTTTATA-TTTCTTTA-T
1 ACTTTTATATTTTC-TTACG
76535590 ACTTTTATCATTTTCTTACG
1 ACTTTTAT-ATTTTCTTACG
76535610 ACTTT
1 ACTTT
76535615 ATAAATTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 2 0.06
18 8 0.24
19 8 0.24
20 16 0.47
ACGTcount: A:0.24, C:0.14, G:0.03, T:0.59
Consensus pattern (19 bp):
ACTTTTATATTTTCTTACG
Found at i:76535672 original size:29 final size:30
Alignment explanation
Indices: 76535580--76535677 Score: 76
Period size: 29 Copynumber: 3.3 Consensus size: 30
76535570 CGAATTTTAT
* * *
76535580 ATTTCTTTATACTTTTATCATTTTCTTACG
1 ATTTCTATATACTTTTATAATTTTTTTACG
* * * * *
76535610 ACTT-TATAAATTCTTTATATTTTTTTCTA-T
1 ATTTCTATATACT-TTTATAATTTTTT-TACG
76535640 ATTTCTATATA-TTTTATAATTTTTTTACG
1 ATTTCTATATACTTTTATAATTTTTTTACG
*
76535669 ATTTTTATA
1 ATTTCTATA
76535678 ATTTTTTTCT
Statistics
Matches: 51, Mismatches: 13, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
28 2 0.04
29 25 0.49
30 17 0.33
31 7 0.14
ACGTcount: A:0.26, C:0.10, G:0.02, T:0.62
Consensus pattern (30 bp):
ATTTCTATATACTTTTATAATTTTTTTACG
Found at i:76535692 original size:20 final size:20
Alignment explanation
Indices: 76535641--76535692 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
76535631 TTTTTCTATA
76535641 TTTCTATATATTTTATAATTTT
1 TTTCTA-AT-TTTTATAATTTT
*
76535663 TTTAC-GATTTTTATAATTTT
1 TTT-CTAATTTTTATAATTTT
76535683 TTTCTAATTT
1 TTTCTAATTT
76535693 CTAATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 1 0.04
20 19 0.73
21 2 0.08
22 3 0.12
23 1 0.04
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTCTAATTTTTATAATTTT
Found at i:76540426 original size:5 final size:5
Alignment explanation
Indices: 76540418--76540474 Score: 114
Period size: 5 Copynumber: 11.4 Consensus size: 5
76540408 ATTAATTATA
76540418 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT
76540468 TATTT TA
1 TATTT TA
76540475 AATAATATAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 52 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:76540860 original size:2 final size:2
Alignment explanation
Indices: 76540807--76540842 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
76540797 ACAAGCAAAT
76540807 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76540843 TTTTAGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:76541225 original size:27 final size:28
Alignment explanation
Indices: 76541182--76541236 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
76541172 AAAATTTTAA
76541182 AAAAATATTGTTAAAATTTATA-AAAAT
1 AAAAATATTGTTAAAATTTATAGAAAAT
* *
76541209 AAAAATTTTAGTT-AAATTTTTAGAAAAT
1 AAAAATATT-GTTAAAATTTATAGAAAAT
76541237 TTCAAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (28 bp):
AAAAATATTGTTAAAATTTATAGAAAAT
Found at i:76544643 original size:148 final size:148
Alignment explanation
Indices: 76544450--76544743 Score: 444
Period size: 148 Copynumber: 2.0 Consensus size: 148
76544440 ATATATTTTA
* * ** * **
76544450 ATATATTCAAATTTATGTAGCAACAATACCAATAATGATTGAGTTAAAATTTAATGGATATTTTA
1 ATATATTCAAATTTATGTAACAACAATACCAATAATAATCAAGTTAAAATTCAATCCATATTTTA
* *
76544515 GATTTATTATTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGTAAAGGTGAAC
66 GATCTATTATTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGAAAAGGTGAAC
76544580 CTGATCTGACGGTCTTAG
131 CTGATCTGACGGTCTTAG
* * *
76544598 ATATATTCAAATTTATGTAACAATAATACTAATAATAATCAAGTTAAAATTCAGTCCATATTTTA
1 ATATATTCAAATTTATGTAACAACAATACCAATAATAATCAAGTTAAAATTCAATCCATATTTTA
* * * *
76544663 GATCTATTATTGTTTAAATTTAGATATCTTTTCTCCCAATCTGATCTGATGGTGAAAAGGTGAAC
66 GATCTATTATTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGAAAAGGTGAAC
76544728 CTGATCTGACGGTCTT
131 CTGATCTGACGGTCTT
76544744 GATCAAGGTG
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
148 130 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (148 bp):
ATATATTCAAATTTATGTAACAACAATACCAATAATAATCAAGTTAAAATTCAATCCATATTTTA
GATCTATTATTATTTAAATTTAGATATATTTTCTCCCAATCTGATCTGAGGGAGAAAAGGTGAAC
CTGATCTGACGGTCTTAG
Found at i:76548711 original size:445 final size:443
Alignment explanation
Indices: 76547883--76548770 Score: 1598
Period size: 445 Copynumber: 2.0 Consensus size: 443
76547873 AATAAAGAGA
*
76547883 AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTTTAGGATCAATCAGATTCG
1 AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTGTAGGATCAATCAGATTCG
* *
76547948 AGATGGACCACTCTCCCAAATAATACTTTTTAATAAAGACTCCTCTCCTATTAAAGAGTTTCCTA
66 AGATGGACCACTCTCCCAAATAATACTTTTTAATAAAGACTCCCCTCCTACTAAAGAGTTTCCTA
76548013 GGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACATAAT
131 GGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACATAAT
* *
76548078 CTGTAATAGCCAAAGTGGTTCCTAATTTTCATATTAGTGTAACCAAGGTGGTTCCAAGATTTCAG
196 CTGTAACAGCCAAAGTGGTTACTAATTTTCATATTAGTGTAACCAAGGTGGTTCCAAGATTTCAG
* *
76548143 TTAACTGACTAAATGTGACTTCTTCCATATTTTTTTCATGTGCCCTAGATTTCCACCTTGAGTAT
261 TTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGAGTAT
*
76548208 ATTTATAAGGGAGTTGCATCAATATTTCCCCCTCGTAAGATGACTTGTCCTCAAGGCGAAAGGAT
326 ATTTATAAGGGAGTTGCATCAATATTTCCCCCACGTAAGATGACTTGTCCTCAAGGCGAAAGGAT
76548273 GGAAATTGTTCGACAAAGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
391 GGAAATTGTTCGACAAAGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
* *
76548326 AATACTGGAGTGATAAAATGGAAAATAAAGAATTTAAAATTTACTTGTAGGATCAGTTC-GATTC
1 AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTGTAGGATCA-ATCAGATTC
*
76548390 GAGATGGACCACTCTCCCAAATAATACTTTTTAATAAAAGGACTCCCCTCTTACTAAAGAGTTTC
65 GAGATGGACCACTCTCCCAAATAATACTTTTTAAT-AAA-GACTCCCCTCCTACTAAAGAGTTTC
76548455 CTAGGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACAT
128 CTAGGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACAT
* *
76548520 AATCTGTAACAGCCAAAGTGGTTACTAATTTTCATATTTGTGTAACCAAGGTGGTTCCATGATTT
193 AATCTGTAACAGCCAAAGTGGTTACTAATTTTCATATTAGTGTAACCAAGGTGGTTCCAAGATTT
76548585 CAGTTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGAG
258 CAGTTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGAG
* *
76548650 TATATTTATAGGGGAGTTGCATCAATATTTCCCCCACGTAAGATGACTTGTCCTTAAGGCGAAAG
323 TATATTTATAAGGGAGTTGCATCAATATTTCCCCCACGTAAGATGACTTGTCCTCAAGGCGAAAG
*
76548715 GATGGAAATTGTTCGACAAGGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
388 GATGGAAATTGTTCGACAAAGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
76548771 CCTCCCTTTC
Statistics
Matches: 426, Mismatches: 16, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
443 93 0.22
444 5 0.01
445 328 0.77
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (443 bp):
AATACTGGAGTGATAAAATGGAAAATAAAGAATTCAAAATTTACTTGTAGGATCAATCAGATTCG
AGATGGACCACTCTCCCAAATAATACTTTTTAATAAAGACTCCCCTCCTACTAAAGAGTTTCCTA
GGTTATTTATACTAACAATCCCAGGTAATAACCTCAACTAATAAGCTTAAATAAAGGAACATAAT
CTGTAACAGCCAAAGTGGTTACTAATTTTCATATTAGTGTAACCAAGGTGGTTCCAAGATTTCAG
TTAACTGACTAAATATGACTTCTTCCATATTTTTTCCATGTGCCCTAGATTTCCACCTTGAGTAT
ATTTATAAGGGAGTTGCATCAATATTTCCCCCACGTAAGATGACTTGTCCTCAAGGCGAAAGGAT
GGAAATTGTTCGACAAAGAGATCATAATTTTCCCCTGAAGCTTCTTCTAAAGG
Found at i:76551954 original size:63 final size:63
Alignment explanation
Indices: 76551855--76551982 Score: 184
Period size: 63 Copynumber: 2.0 Consensus size: 63
76551845 TCATATTCAA
* * * * *
76551855 TTCTTTGACAATGGTATCGACTATGAAATTGTGTGTAGAGCCATTATCAATAAGAATTAAAAC
1 TTCTTTCACAATGGTATCAACTATGAAATTGTGTGTAGACCCACTATCAATAAAAATTAAAAC
* * *
76551918 TTCTTTCATAATGGTATCAACTATGAAATTGTGTGTAGACCCACTGTTAATAAAAATTAAAAC
1 TTCTTTCACAATGGTATCAACTATGAAATTGTGTGTAGACCCACTATCAATAAAAATTAAAAC
76551981 TT
1 TT
76551983 GTATGGTCTT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (63 bp):
TTCTTTCACAATGGTATCAACTATGAAATTGTGTGTAGACCCACTATCAATAAAAATTAAAAC
Found at i:76561682 original size:241 final size:241
Alignment explanation
Indices: 76561253--76561736 Score: 815
Period size: 241 Copynumber: 2.0 Consensus size: 241
76561243 ATTACTGGGC
* *
76561253 ATTCTATTTACAACATTAAAGGTGCAGGGGACACACGGCCTAACCACATGCCCATGTATAAGCTA
1 ATTCTATTTACAACATTAAAGGTACAGGGGACACACGGCCTAACCACATGCCCATGTATAAGCCA
*
76561318 TGTGTCTCACACAGTCTGATCACATGCCAGTGTGCCAGGCCATGTGGACTCAAAAATGAGCCTTT
66 TGTGTCTCACACAGTCTGATCACACGCCAGTGTGCCAGGCCATGTGGACTCAAAAATGAGCCTTT
* *
76561383 CAATTCAAGTTTACCAACCTTGCAAACCTTAAATAACAAGCAAATTAAATTCCAATCTTTCAATC
131 CAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGCAAATTAAATTCCAATCTTTCAATA
*
76561448 AATCCAAAACATGATTAAATACATCTAAAACATGTCAAAACTGTTA
196 AATCCAAAACATGATCAAATACATCTAAAACATGTCAAAACTGTTA
* * * *
76561494 ATTCTGTTTACAACATTTAAGGTACAGGGGACACACGGCCTAACCACATGCCCGTGTATAAGCCG
1 ATTCTATTTACAACATTAAAGGTACAGGGGACACACGGCCTAACCACATGCCCATGTATAAGCCA
* * * * *
76561559 TGTGTCTCATACGGTCTGATCACACGCCCGTGTGTCAGGCCGTGTGGACTCAAAAATGAGCCTTT
66 TGTGTCTCACACAGTCTGATCACACGCCAGTGTGCCAGGCCATGTGGACTCAAAAATGAGCCTTT
*
76561624 CAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGCAACTTAAATTCCAATCTTTCAATA
131 CAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGCAAATTAAATTCCAATCTTTCAATA
*
76561689 AATCCAAAAGATGATCAAATACATCTAAAACATGTCAAAACTGTTA
196 AATCCAAAACATGATCAAATACATCTAAAACATGTCAAAACTGTTA
76561735 AT
1 AT
76561737 ATAACGACCT
Statistics
Matches: 226, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
241 226 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (241 bp):
ATTCTATTTACAACATTAAAGGTACAGGGGACACACGGCCTAACCACATGCCCATGTATAAGCCA
TGTGTCTCACACAGTCTGATCACACGCCAGTGTGCCAGGCCATGTGGACTCAAAAATGAGCCTTT
CAATTCAAGTTTACCAACCCTGCAAACCTTAAATAACAAGCAAATTAAATTCCAATCTTTCAATA
AATCCAAAACATGATCAAATACATCTAAAACATGTCAAAACTGTTA
Found at i:76561718 original size:21 final size:20
Alignment explanation
Indices: 76561685--76561727 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
76561675 CCAATCTTTC
*
76561685 AATAAATCCAAAAGATGATCA
1 AATAAATCCAAAACATG-TCA
* *
76561706 AATACATCTAAAACATGTCA
1 AATAAATCCAAAACATGTCA
76561726 AA
1 AA
76561728 ACTGTTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.56, C:0.16, G:0.07, T:0.21
Consensus pattern (20 bp):
AATAAATCCAAAACATGTCA
Found at i:76567074 original size:26 final size:26
Alignment explanation
Indices: 76567043--76567095 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
76567033 CACCTGAAAG
76567043 AAACTCATACAAAAGTAAATATGAAC
1 AAACTCATACAAAAGTAAATATGAAC
76567069 AAACTCATACAAAAGTAAATATGAAC
1 AAACTCATACAAAAGTAAATATGAAC
76567095 A
1 A
76567096 TGCTAATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.58, C:0.15, G:0.08, T:0.19
Consensus pattern (26 bp):
AAACTCATACAAAAGTAAATATGAAC
Found at i:76567658 original size:20 final size:20
Alignment explanation
Indices: 76567635--76567695 Score: 67
Period size: 17 Copynumber: 3.1 Consensus size: 20
76567625 CGTAATTTAA
76567635 ATTTTTTTGAATTTTTATAT
1 ATTTTTTTGAATTTTTATAT
*
76567655 A-TTTTTT--ATTTTTA-AA
1 ATTTTTTTGAATTTTTATAT
76567671 ATATTTTTTGAATTGTTTATAT
1 AT-TTTTTTGAATT-TTTATAT
76567693 ATT
1 ATT
76567696 CAATTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
18 6 0.18
19 6 0.18
20 4 0.12
21 5 0.15
22 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
ATTTTTTTGAATTTTTATAT
Found at i:76567659 original size:18 final size:18
Alignment explanation
Indices: 76567638--76567695 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
76567628 AATTTAAATT
76567638 TTTTTGAATTTTTATATA
1 TTTTTGAATTTTTATATA
* *
76567656 TTTTT-TATTTTTAAAATA
1 TTTTTGAATTTTT-ATATA
76567674 TTTTTTGAATTGTTTATATA
1 -TTTTTGAATT-TTTATATA
76567694 TT
1 TT
76567696 CAATTTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
17 6 0.19
18 9 0.28
19 7 0.22
20 7 0.22
21 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (18 bp):
TTTTTGAATTTTTATATA
Found at i:76567702 original size:36 final size:35
Alignment explanation
Indices: 76567633--76567711 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 35
76567623 TTCGTAATTT
**
76567633 AAATTTTTTTGAATTTTTATATATTTTTTATTTTTA
1 AAATTTTTTTGAATTTTTATATA-TTTCAATTTTTA
76567669 AAATATTTTTTGAATTGTTTATATA-TTCAATTTTTA
1 AAAT-TTTTTTGAATT-TTTATATATTTCAATTTTTA
*
76567705 TAATTTT
1 AAATTTT
76567712 ATGAAATTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 3 0.08
36 16 0.42
37 11 0.29
38 8 0.21
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (35 bp):
AAATTTTTTTGAATTTTTATATATTTCAATTTTTA
Found at i:76567757 original size:30 final size:29
Alignment explanation
Indices: 76567688--76567757 Score: 70
Period size: 30 Copynumber: 2.3 Consensus size: 29
76567678 TTGAATTGTT
76567688 TATATATTCAATTTTTATAATTTTATGAAA
1 TATATATT-AATTTTTATAATTTTATGAAA
* * * *
76567718 TTTAAATTAATTTTT-TAAATATTTTTTAAA
1 TATATATTAATTTTTAT-AAT-TTTATGAAA
76567748 TATATATTAA
1 TATATATTAA
76567758 AATTGTTTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
28 1 0.03
29 10 0.31
30 21 0.66
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (29 bp):
TATATATTAATTTTTATAATTTTATGAAA
Found at i:76568879 original size:5 final size:5
Alignment explanation
Indices: 76568858--76568893 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
76568848 TGTGTAATAC
*
76568858 ATATA TTATA ATAATA ATATA ATATA ATATA ATATA
1 ATATA ATATA AT-ATA ATATA ATATA ATATA ATATA
76568894 TAGTTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:76571448 original size:6 final size:6
Alignment explanation
Indices: 76571437--76571476 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
76571427 CATGGAGGAG
76571437 GGTGTT GGTGTT GGTGTT GGTGTT GGTGTT GGTGTT GGTG
1 GGTGTT GGTGTT GGTGTT GGTGTT GGTGTT GGTGTT GGTG
76571477 AAAAGTGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.53, T:0.47
Consensus pattern (6 bp):
GGTGTT
Found at i:76572669 original size:35 final size:35
Alignment explanation
Indices: 76572629--76572749 Score: 104
Period size: 35 Copynumber: 3.3 Consensus size: 35
76572619 ATCAAACAAT
76572629 TATTTCAAATATCATTATTATTTTTATATGTAAAA
1 TATTTCAAATATCATTATTATTTTTATATGTAAAA
* * *
76572664 TATTTCAAAAATCATTATTTTTTCATCTATATTGTGACTATGA
1 TATTTCAAATATCATTATTATTT--T-TATA-TGT-A--A-AA
* *
76572707 TATTTCAAATAT-A--ATTATGTTTATATGTGAAA
1 TATTTCAAATATCATTATTATTTTTATATGTAAAA
76572739 TATTTCAAATA
1 TATTTCAAATA
76572750 CACATGCAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
32 12 0.17
33 1 0.01
35 21 0.30
36 3 0.04
37 5 0.07
38 5 0.07
39 3 0.04
40 6 0.09
42 2 0.03
43 12 0.17
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.49
Consensus pattern (35 bp):
TATTTCAAATATCATTATTATTTTTATATGTAAAA
Found at i:76573565 original size:19 final size:21
Alignment explanation
Indices: 76573543--76573582 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
76573533 TTGTTACTTG
76573543 AAATTAATA-ATG-TTTTTTT
1 AAATTAATATATGATTTTTTT
*
76573562 AAATTGATATATGATTTTTTT
1 AAATTAATATATGATTTTTTT
76573583 TTGTCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 3 0.17
21 7 0.39
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
AAATTAATATATGATTTTTTT
Found at i:76573581 original size:20 final size:19
Alignment explanation
Indices: 76573543--76573581 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
76573533 TTGTTACTTG
*
76573543 AAATTAATAATGTTTTTTT
1 AAATTAATAATGATTTTTT
*
76573562 AAATTGATATATGATTTTTT
1 AAATTAATA-ATGATTTTTT
76573582 TTTGTCAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
AAATTAATAATGATTTTTT
Found at i:76574521 original size:28 final size:28
Alignment explanation
Indices: 76574489--76574542 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
76574479 TAAAATTAAT
76574489 TAAAATTCAAAAATAA-TAAGAAAAAATA
1 TAAAATTCAAAAATAATTAA-AAAAAATA
* *
76574517 TAAAATTTAAATATAATTAAAAAAAA
1 TAAAATTCAAAAATAATTAAAAAAAA
76574543 GGAAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 20 0.87
29 3 0.13
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (28 bp):
TAAAATTCAAAAATAATTAAAAAAAATA
Found at i:76575814 original size:13 final size:14
Alignment explanation
Indices: 76575798--76575833 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
76575788 CAATCTCATA
76575798 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
76575811 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
76575824 TCTC-ATTTCA
1 TCTCAATTTCA
76575834 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:76575823 original size:18 final size:19
Alignment explanation
Indices: 76575785--76575825 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
76575775 TGGTTCATGT
76575785 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
76575804 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
76575822 TTTC
1 TTTC
76575826 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:76576015 original size:39 final size:38
Alignment explanation
Indices: 76575948--76576082 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
76575938 ACCAATATGG
* * *
76575948 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
76575987 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
76576025 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
76576066 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
76576083 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:76576261 original size:18 final size:19
Alignment explanation
Indices: 76576230--76576268 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
76576220 TAAATTCATA
76576230 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
76576249 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
76576267 AT
1 AT
76576269 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:76577596 original size:5 final size:5
Alignment explanation
Indices: 76577586--76577638 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
76577576 TTACTTATTT
* *
76577586 ATATA ATATA ATATAGA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATATA ATAT--A ATATA ATATA ATATA ATATA AT-ATA ATATA
76577634 ATATA
1 ATATA
76577639 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 5 0.12
7 5 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:76586071 original size:51 final size:51
Alignment explanation
Indices: 76586012--76586119 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 51
76586002 CAATGATAAA
*
76586012 TGATAAGTGGTAGCCTCAGCTACACTTATTTGATTAGTGACAAGTGACAAG
1 TGATAAGTGGTAGCCTCAGCTACACTTATCTGATTAGTGACAAGTGACAAG
* *
76586063 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAGTGACAAGTGACAAG
1 TGATAAGTGGTAGCCTCAGCTACACTTATCTGATTAGTGACAAGTGACAAG
76586114 TGATAA
1 TGATAA
76586120 ATGTGATCCG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (51 bp):
TGATAAGTGGTAGCCTCAGCTACACTTATCTGATTAGTGACAAGTGACAAG
Found at i:76587901 original size:49 final size:46
Alignment explanation
Indices: 76587607--76587924 Score: 245
Period size: 47 Copynumber: 6.7 Consensus size: 46
76587597 ATTTCTTGTG
* * * *
76587607 TGCCAGTGTAAGACATGTCTGGAACATGCATCGGGCAC-ATTATGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * * *
76587652 GTGCCAGTGTAAGACCATTTCTGGGACATAGCATTGGCGTAGA-GATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGATGA
* * *
76587700 GTGCCATTGTAAGACATGTTTGGGACATGCATCGGCCTCGACGATGA
1 -TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
* * * * *
76587747 TAGCCAGTGTAAGACATATCTGGGGCATGCAT-TGCCTAAGA-GTTG-
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGATGATGA
* *
76587792 TGCCAGTGTAAGACATGTCTGGGACATGCATCAG-CACGTAT-ATACGA
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATGAT--GA
* * *
76587839 GAGCTAGTATAAGACCATGTCTGGGACATGACATCGGCCTCGATGATGA
1 -TGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGATGATGA
* *
76587888 TAGCCAGTGTAAGACCATATCTGGGGCATGACATCGG
1 T-GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGG
76587925 TAACTTATCC
Statistics
Matches: 217, Mismatches: 37, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.00
44 31 0.14
45 2 0.01
46 32 0.15
47 57 0.26
48 33 0.15
49 49 0.23
50 7 0.03
51 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA
Found at i:76593158 original size:40 final size:40
Alignment explanation
Indices: 76592969--76593175 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
76592959 GGATTGATAC
* *
76592969 CCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
*
76593009 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * *
76593048 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
76593088 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
76593128 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
76593168 CC-GGCTAA
1 CCGGGCTAA
76593176 ACTTCGAAGG
Statistics
Matches: 155, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 41 0.26
40 114 0.74
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:76597548 original size:3 final size:3
Alignment explanation
Indices: 76597540--76597568 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
76597530 AAATAAACTC
76597540 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
76597569 ACATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:76597893 original size:17 final size:17
Alignment explanation
Indices: 76597843--76597893 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
76597833 TTATAACTTG
76597843 AATATTATAAATT-TTA
1 AATATTATAAATTCTTA
* * *
76597859 GA-ATTAGAAAAATCTTA
1 AATATTA-TAAATTCTTA
76597876 AATATTATAAATTCTTA
1 AATATTATAAATTCTTA
76597893 A
1 A
76597894 TTCCAACTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
15 4 0.15
16 5 0.19
17 13 0.50
18 4 0.15
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (17 bp):
AATATTATAAATTCTTA
Found at i:76599593 original size:22 final size:22
Alignment explanation
Indices: 76599568--76599612 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
76599558 TTTAATAAAA
76599568 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
76599590 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
76599612 A
1 A
76599613 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:76604192 original size:22 final size:22
Alignment explanation
Indices: 76604166--76604210 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
76604156 TTTTAATAAA
76604166 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
76604188 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
76604210 A
1 A
76604211 CAGAAAGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:76606240 original size:27 final size:28
Alignment explanation
Indices: 76606183--76606242 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
76606173 TCATGTTTAG
* *
76606183 AAATTTTAAAGAAAATTATTTTTTTGAA
1 AAATTTTAAAGAAAATCATTTTTTTAAA
76606211 AAATTTTAAAGAAAATCA-TTTTTTAAA
1 AAATTTTAAAGAAAATCATTTTTTTAAA
76606238 AAATT
1 AAATT
76606243 AACTCGAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (28 bp):
AAATTTTAAAGAAAATCATTTTTTTAAA
Found at i:76607014 original size:12 final size:12
Alignment explanation
Indices: 76606997--76607021 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76606987 ATGTAAGTGA
76606997 TCTTGATGATTT
1 TCTTGATGATTT
76607009 TCTTGATGATTT
1 TCTTGATGATTT
76607021 T
1 T
76607022 TATATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:76607885 original size:47 final size:46
Alignment explanation
Indices: 76607740--76608056 Score: 198
Period size: 47 Copynumber: 6.7 Consensus size: 46
76607730 TTTCTTGTGT
* * * * *
76607740 GCCAGAGTAAGACATGTCTGGGACATGCATCGGGCAC-ATTATGATT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGATG
* * ** * *
76607786 GCCAGCGTAAGACCATGTCTTGGACATGGCATCGGTGTAGAGAT-AAG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGATG
*
76607833 TGCCAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGACGATGATG
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGATG
* * ** * *
76607881 GCCAGTGTAAGACGTGTCTGGGGCATGCATC-AACT-AAGA-GTTG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATG
* * * * *
76607924 TGCTAGTGTAAGACATGTCTGGGACATACATCAG-CACGTATATACGA-G
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-AGAT--GATG
* * * *
76607972 AGCTAGTATAAGACCATGTCTGGGACATGGCATCAGCCTCGATGATGATA
1 -GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGATG
*
76608022 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
76608057 TAACTTATCC
Statistics
Matches: 211, Mismatches: 42, Indels: 33
0.74 0.15 0.12
Matches are distributed among these distances:
43 3 0.01
44 30 0.14
45 1 0.00
46 25 0.12
47 57 0.27
48 34 0.16
49 49 0.23
50 7 0.03
51 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGATG
Found at i:76615735 original size:51 final size:51
Alignment explanation
Indices: 76615652--76615768 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 51
76615642 ACTTCTTATC
* * * *
76615652 AGTGACAAGCGATAAGTGGTAGCCTCAACTACACTTATCTGATTATTGACA
1 AGTGACAAGTGATAAGAGGTAGCCTCAACTACACTTATCTGATCAGTGACA
* * *
76615703 AGTGACAAGTGATAAGAGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGAGGTAGCCTCAACTACACTTATCTGATCAGTGACA
76615754 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
76615769 ATGTGATCCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
AGTGACAAGTGATAAGAGGTAGCCTCAACTACACTTATCTGATCAGTGACA
Found at i:76618599 original size:22 final size:22
Alignment explanation
Indices: 76618574--76618620 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
76618564 GTAGGATCTT
**
76618574 TGTCTACATTTGTATCTGAATC
1 TGTCTACATTTACATCTGAATC
*
76618596 TGTCTATATTTACATCTGAATC
1 TGTCTACATTTACATCTGAATC
76618618 TGT
1 TGT
76618621 TTATGCATCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (22 bp):
TGTCTACATTTACATCTGAATC
Found at i:76624539 original size:13 final size:13
Alignment explanation
Indices: 76624521--76624545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76624511 TAAATTTAAA
76624521 TAAAATTATTTTC
1 TAAAATTATTTTC
76624534 TAAAATTATTTT
1 TAAAATTATTTT
76624546 ATTTAAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAAATTATTTTC
Found at i:76639946 original size:13 final size:13
Alignment explanation
Indices: 76639928--76639958 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
76639918 CATTTCTTTC
*
76639928 TTTCTTTTTTTTT
1 TTTCTTTTTTCTT
76639941 TTTCTTTTTTCTT
1 TTTCTTTTTTCTT
76639954 TTTCT
1 TTTCT
76639959 GAAAACCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTCTTTTTTCTT
Found at i:76641199 original size:20 final size:21
Alignment explanation
Indices: 76641155--76641199 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
76641145 AAAAAATACT
76641155 TTGATCAATAGTTGACCATAG
1 TTGATCAATAGTTGACCATAG
76641176 TTGATCAAT-GTTGACCGATA-
1 TTGATCAATAGTTGACC-ATAG
76641196 TTGA
1 TTGA
76641200 CTAGGTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (21 bp):
TTGATCAATAGTTGACCATAG
Found at i:76642453 original size:2 final size:2
Alignment explanation
Indices: 76642446--76642505 Score: 77
Period size: 2 Copynumber: 29.0 Consensus size: 2
76642436 CATCTACTTT
*
76642446 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TCA TA TA CTA TA TCA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA -TA TA T-A
76642491 TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
76642506 ATCTAAAGTT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
1 1 0.02
2 45 0.87
3 6 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:76648227 original size:58 final size:57
Alignment explanation
Indices: 76648078--76648229 Score: 150
Period size: 58 Copynumber: 2.7 Consensus size: 57
76648068 AATAGTTATA
* * * **
76648078 ATTTT-TT-AATT-TATATAATAATAATTATATTAAGAATTTTATTAAATTTTATATT
1 ATTTTATTAAATTATATTTAATAATAACTATATTAA-AATATGGTTAAATTTTATATT
* *
76648133 ATTTTATTAAGTTATATTTAATAATAACTATGTTAAAATATGGTTAAATTATT-TATT
1 ATTTTATTAAATTATATTTAATAATAACTATATTAAAATATGGTTAAATT-TTATATT
* * * *
76648190 ATTTTTATTAAATTATTTTTAATAGTAATTTTATTAAAAT
1 A-TTTTATTAAATTATATTTAATAATAACTATATTAAAAT
76648230 TTAATAACAA
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
55 5 0.06
56 2 0.03
57 19 0.24
58 53 0.67
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.55
Consensus pattern (57 bp):
ATTTTATTAAATTATATTTAATAATAACTATATTAAAATATGGTTAAATTTTATATT
Found at i:76648347 original size:39 final size:40
Alignment explanation
Indices: 76648304--76648409 Score: 99
Period size: 44 Copynumber: 2.5 Consensus size: 40
76648294 TTTCCTTATG
76648304 CTATTACAACATTATTCCATTCAACCAAACACAAGAA-TA
1 CTATTACAACATTATTCCATTCAACCAAACACAAGAATTA
* ***
76648343 CTATTACAGTTCTATTCCATTCCATTCAACCAAACAGTTGAATTA
1 CTATTACA--AC-ATT--ATTCCATTCAACCAAACACAAGAATTA
76648388 CTGATTACAAC-TCTATTCCATT
1 CT-ATTACAACAT-TATTCCATT
76648410 ACAGCTCTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
39 8 0.15
41 9 0.17
42 4 0.07
43 1 0.02
44 22 0.41
45 4 0.07
46 6 0.11
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (40 bp):
CTATTACAACATTATTCCATTCAACCAAACACAAGAATTA
Found at i:76648412 original size:16 final size:16
Alignment explanation
Indices: 76648391--76648461 Score: 108
Period size: 16 Copynumber: 4.4 Consensus size: 16
76648381 TGAATTACTG
*
76648391 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
76648407 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
76648423 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
76648439 ATTACAGC-CTTATTCC
1 ATTACAGCTC-TATTCC
76648455 ATTACAG
1 ATTACAG
76648462 TGAACCAAAC
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
15 1 0.02
16 50 0.98
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:76648760 original size:20 final size:19
Alignment explanation
Indices: 76648732--76648770 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
76648722 TTATAATATC
*
76648732 ATGTTTAAAATGAACATTTT
1 ATGTCTAAAA-GAACATTTT
*
76648752 ATGTCTAAAAGCACATTTT
1 ATGTCTAAAAGAACATTTT
76648771 CACAACACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (19 bp):
ATGTCTAAAAGAACATTTT
Found at i:76649318 original size:244 final size:246
Alignment explanation
Indices: 76648833--76649449 Score: 734
Period size: 244 Copynumber: 2.5 Consensus size: 246
76648823 TTTTTTATTT
* * * ** *
76648833 TTTTTATAAATTTTAATATTGTACATATTTT-ATGTGTTATTATCAGTTAGTTTCAAACCATATG
1 TTTTT-TAAATTTTAATAATGAACAT-TTTTCATGTGTTATTATTAAATAGTTTCAAACCATATA
* * * * * *
76648897 TTTTATTATTTATTATAG-GTTATTTTTAAACATACATTTATGTTCTAAAATTTTGGTTTTTAAT
64 TCTCATTATTTATTGT-GTGTTATTTTTAAACACACATTTATGTTCTAAATTTTTGGTTTCTAAT
*
76648961 CGTATACACATGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTT
128 CATATACACATGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTT
* * *
76649026 AACTCGACACCAACTTAAGATTGATGACAACATATTGATAAACAATTTAATCTAA
193 AACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCT-A
* * *
76649081 TTTTTTAAATTATAATAATGAACATTTTTCATGTGTTATTGTTAAATAGTTTCAAACCATATATG
1 TTTTTTAAATTTTAATAATGAACATTTTTCATGTGTTATTATTAAATAGTTTCAAACCATATATC
* *
76649146 TCATTATTTATTGTGTGTTATTTTTAAACACACATTTATGTTCGAAATTTTTTGTTTCTACAT-A
66 TCATTATTTATTGTGTGTTATTTTTAAACACACATTTATGTTCTAAATTTTTGGTTTCTA-ATCA
* * * *
76649210 TATACGCATGTGATA-AGATT-TA-TATTAGTAATGTATTTGATTGAGTTAG-TGTCTCTAA-TT
130 TATACACATGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTT-GTTGTCAC-AAGTT
*
76649270 AACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCTT
193 AACTCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCTA
* * * * *
76649324 TTTTTTAAAATTTTAAT-ATTATACATATTTCATGTATTTTTATT-AATCAGTTTCTAACCATA-
1 TTTTTT-AAATTTTAATAATGA-ACATTTTTCATGTGTTATTATTAAAT-AGTTTCAAACCATAT
* * * **
76649386 AGTCTCACTATTTATTGTATGTTATTTTTAAACACAAATTTGGGTTCTAAATTTTTGGTTTCTA
63 A-TCTCATTATTTATTGTGTGTTATTTTTAAACACACATTTATGTTCTAAATTTTTGGTTTCTA
76649450 TACACATAAG
Statistics
Matches: 320, Mismatches: 40, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
243 13 0.04
244 175 0.55
245 5 0.02
246 9 0.03
247 111 0.35
248 7 0.02
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (246 bp):
TTTTTTAAATTTTAATAATGAACATTTTTCATGTGTTATTATTAAATAGTTTCAAACCATATATC
TCATTATTTATTGTGTGTTATTTTTAAACACACATTTATGTTCTAAATTTTTGGTTTCTAATCAT
ATACACATGTGATAGAAATTCTAGTATTAGTAATGTATTCGATTGAGTTGTTGTCACAAGTTAAC
TCGACACCAACTCAAGATTGATGACAACACAATGATAAACAATTTAATCTA
Done.