Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 266 of 427
Found at i:76651149 original size:53 final size:53
Alignment explanation
Indices: 76651082--76651189 Score: 180
Period size: 53 Copynumber: 2.0 Consensus size: 53
76651072 GTGTGTATAT
* *
76651082 ATATATATATTATTTATTAAGTTTTTACTGAGCTGGTGTCACCCATCAACTGG
1 ATATATATACTATTTATTAAGCTTTTACTGAGCTGGTGTCACCCATCAACTGG
* *
76651135 ATATATATACTATTTATTAAGCTTTTACTGAGTTTGTGTCACCCATCAACTGG
1 ATATATATACTATTTATTAAGCTTTTACTGAGCTGGTGTCACCCATCAACTGG
76651188 AT
1 AT
76651190 CCCAACTCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.42
Consensus pattern (53 bp):
ATATATATACTATTTATTAAGCTTTTACTGAGCTGGTGTCACCCATCAACTGG
Found at i:76651825 original size:20 final size:21
Alignment explanation
Indices: 76651802--76651849 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
76651792 ATTAAAATAT
*
76651802 TAAAATAT-TAAAATTTAGGA
1 TAAAATATCTAAAATTCAGGA
*
76651822 TAAAAT-TCTGAAATTCAGGA
1 TAAAATATCTAAAATTCAGGA
76651842 TAAGAATA
1 TAA-AATA
76651850 CTGATGTGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.04
20 19 0.83
21 3 0.13
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.31
Consensus pattern (21 bp):
TAAAATATCTAAAATTCAGGA
Found at i:76653384 original size:15 final size:16
Alignment explanation
Indices: 76653364--76653396 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
76653354 TATATATTTT
76653364 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
76653379 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
76653396 T
1 T
76653397 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:76653469 original size:21 final size:22
Alignment explanation
Indices: 76653443--76653501 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
76653433 ATTTTAAGAA
*
76653443 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
76653464 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
76653486 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
76653502 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:76653516 original size:26 final size:24
Alignment explanation
Indices: 76653472--76653520 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
76653462 ATTTGTTTTA
*
76653472 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
76653496 ATATTTGATTTATTATATTTTTAAA
1 ATATTTG-TTT-TTATATTTTTAAA
76653521 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:76653831 original size:25 final size:24
Alignment explanation
Indices: 76653799--76653847 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
76653789 AATATTTTTA
*
76653799 AATTAAAATTTAATTGTTAATATT
1 AATTAAAATATAATTGTTAATATT
* *
76653823 AATTAAAAATATATTTTTTAATATT
1 AATT-AAAATATAATTGTTAATATT
76653848 TTATTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
AATTAAAATATAATTGTTAATATT
Found at i:76664336 original size:33 final size:33
Alignment explanation
Indices: 76664294--76664359 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
76664284 AGAAATATCA
* *
76664294 CTAAAATTTTCCTTCTACTCATCTTCTCGCCTC
1 CTAAAATTTTCCTCCCACTCATCTTCTCGCCTC
76664327 CTAAAATTTTCCTCCCACTCATCTTCTCGCCTC
1 CTAAAATTTTCCTCCCACTCATCTTCTCGCCTC
76664360 TATTCTGTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.18, C:0.39, G:0.03, T:0.39
Consensus pattern (33 bp):
CTAAAATTTTCCTCCCACTCATCTTCTCGCCTC
Found at i:76668663 original size:20 final size:22
Alignment explanation
Indices: 76668619--76668664 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
76668609 TTTTAGTGTC
* *
76668619 ATTTTTATTTGTTTTAATATTT
1 ATTTTTATGTGTTTTAATATAT
76668641 ATTTTTATGT-TTTTAA-ATAT
1 ATTTTTATGTGTTTTAATATAT
76668661 ATTT
1 ATTT
76668665 GATTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTATGTGTTTTAATATAT
Found at i:76668681 original size:26 final size:24
Alignment explanation
Indices: 76668635--76668694 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
76668625 ATTTGTTTTA
*
76668635 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
76668659 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
76668685 TTTTTTATTT
1 ATATTTATTT
76668695 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:76679104 original size:23 final size:23
Alignment explanation
Indices: 76679069--76679127 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 23
76679059 TGGGTAAGAG
*
76679069 ACACGGGCGTGTGCATTGCCTCC
1 ACACGGGCATGTGCATTGCCTCC
*
76679092 ACACGGGTATGTGCATTGCCTCC
1 ACACGGGCATGTGCATTGCCTCC
*
76679115 ACACGGGCGTGTG
1 ACACGGGCATGTG
76679128 AGGCTTAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.15, C:0.31, G:0.32, T:0.22
Consensus pattern (23 bp):
ACACGGGCATGTGCATTGCCTCC
Found at i:76681313 original size:40 final size:39
Alignment explanation
Indices: 76681268--76681394 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
76681258 CGGAACATAA
76681268 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
76681308 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
76681348 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
76681388 CCGGATA
1 CCGGATA
76681395 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:76681412 original size:40 final size:40
Alignment explanation
Indices: 76681284--76681434 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
76681274 ATAACCATGT
* * *
76681284 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
76681324 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
76681364 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
76681404 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
76681435 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:76681418 original size:80 final size:80
Alignment explanation
Indices: 76681284--76681433 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
76681274 ATAACCATGT
* *
76681284 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
76681348 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
76681364 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
76681427 CCCGGAT
64 CCCGGAT
76681434 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:76684946 original size:129 final size:129
Alignment explanation
Indices: 76684716--76684971 Score: 467
Period size: 129 Copynumber: 2.0 Consensus size: 129
76684706 GAAAAATGTC
76684716 ATCGAAATGTGGAACCAAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
1 ATCGAAATGTGGAACCAAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
*
76684781 CAATATTCATCTCAAAACTGAATGAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
66 CAATATTCATCTCAAAACTGAATAAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
* * *
76684845 ATCGAAATGTGGAACCTAAAATATATACTTACCCACATTGAATTTGTGATACACACAGTTATCAA
1 ATCGAAATGTGGAACCAAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
*
76684910 CAATATTCATCTCAAAACTGAATAAGCCAATTACTTGGTGAAACTTGTGGTACCATTGACGG
66 CAATATTCATCTCAAAACTGAATAAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGG
76684972 AAAGCTTGTT
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 122 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (129 bp):
ATCGAAATGTGGAACCAAAAATATACACTTACCCACATTGAATTTGTGATACACACAGCTATCAA
CAATATTCATCTCAAAACTGAATAAGACAATTACTTGGTGAAACTTGTGGTACCATTGACGGGA
Found at i:76685237 original size:44 final size:44
Alignment explanation
Indices: 76685188--76685276 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
76685178 AACTAGAGAG
*
76685188 AAAGCCTCTATAAAATCAATGTATTCTTTCTGAGTATATCCTTT
1 AAAGCCTCTATAAAATCAATGTATTCTTTCTGAGTAGATCCTTT
*
76685232 AAAGCCTCTATAAAATTAATGTATTCTTTCTGAGTAGATCCTTT
1 AAAGCCTCTATAAAATCAATGTATTCTTTCTGAGTAGATCCTTT
76685276 A
1 A
76685277 GCTATAAGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (44 bp):
AAAGCCTCTATAAAATCAATGTATTCTTTCTGAGTAGATCCTTT
Found at i:76688592 original size:44 final size:44
Alignment explanation
Indices: 76688544--76688651 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 44
76688534 GTGTAAGTTC
* * ** *
76688544 AGTATTTTACCGATGGGCGAATTGTATAAAGTCTTCTTGTGTAT
1 AGTATTTCACCAATGGGCGAAAGGTATAAAGTCTGCTTGTGTAT
* *
76688588 AGTATTTCACCAATGGGCTAAAGGTATAAAGTCTGCTTGTGTCT
1 AGTATTTCACCAATGGGCGAAAGGTATAAAGTCTGCTTGTGTAT
* *
76688632 AGTATTT-GCCAATGAGCGAA
1 AGTATTTCACCAATGGGCGAA
76688652 CTATGTGTTC
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 10 0.19
44 44 0.81
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (44 bp):
AGTATTTCACCAATGGGCGAAAGGTATAAAGTCTGCTTGTGTAT
Found at i:76690413 original size:2 final size:2
Alignment explanation
Indices: 76690406--76690452 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
76690396 AAAGATAATC
76690406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76690448 AT AT A
1 AT AT A
76690453 ATTTTCTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:76693895 original size:22 final size:23
Alignment explanation
Indices: 76693869--76693918 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
76693859 AAGTCCAATT
*
76693869 TGGGCCGTGTG-GGCCACACAGG
1 TGGGCCGTGTGTGCCCACACAGG
*
76693891 TGGG-CGTGTGTGCCCACACGGG
1 TGGGCCGTGTGTGCCCACACAGG
*
76693913 TAGGCC
1 TGGGCC
76693919 AAATGGACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.12, C:0.28, G:0.44, T:0.16
Consensus pattern (23 bp):
TGGGCCGTGTGTGCCCACACAGG
Found at i:76705265 original size:17 final size:18
Alignment explanation
Indices: 76705235--76705268 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
76705225 AGTTTAATAT
76705235 TTTTATTGCTTTTTTTTA
1 TTTTATTGCTTTTTTTTA
76705253 TTTTATT-CTTTTTTTT
1 TTTTATTGCTTTTTTTT
76705269 CGGCTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.06, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTATTGCTTTTTTTTA
Found at i:76705529 original size:26 final size:26
Alignment explanation
Indices: 76705500--76705618 Score: 103
Period size: 26 Copynumber: 4.3 Consensus size: 26
76705490 TAAAGTCATA
76705500 AAAAATTTAGAATTTTCAAAAATTAT
1 AAAAATTTAGAATTTTCAAAAATTAT
* *
76705526 AAAAAATTAGAATTTTCAAAAATAAT
1 AAAAATTTAGAATTTTCAAAAATTAT
* ***
76705552 AAAAATTATAAGAACTGGAAAAAATTAT
1 AAAAATT-T-AGAATTTTCAAAAATTAT
* * *
76705580 AAAAATATTAAAATTTATTAAAATTTAAT
1 AAAAAT-TTAGAATTT-TCAAAAATT-AT
76705609 ATAAAATTTA
1 A-AAAATTTA
76705619 AAAAAAACAA
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
26 30 0.41
27 5 0.07
28 26 0.36
29 7 0.10
30 5 0.07
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (26 bp):
AAAAATTTAGAATTTTCAAAAATTAT
Found at i:76705547 original size:27 final size:27
Alignment explanation
Indices: 76705497--76705556 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 27
76705487 TTCTAAAGTC
*
76705497 ATAAAAAATTTAGAATTTTCAAAAATT
1 ATAAAAAATTTAGAATTTTCAAAAATA
76705524 ATAAAAAA-TTAGAATTTTCAAAAATA
1 ATAAAAAATTTAGAATTTTCAAAAATA
76705550 ATAAAAA
1 ATAAAAA
76705557 TTATAAGAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 24 0.75
27 8 0.25
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (27 bp):
ATAAAAAATTTAGAATTTTCAAAAATA
Found at i:76705598 original size:10 final size:10
Alignment explanation
Indices: 76705585--76705618 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
76705575 ATTATAAAAA
76705585 TATTAAAATT
1 TATTAAAATT
76705595 TATTAAAATT
1 TATTAAAATT
76705605 TAATATAAAATT
1 T-AT-TAAAATT
76705617 TA
1 TA
76705619 AAAAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 11 0.50
11 3 0.14
12 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTAAAATT
Found at i:76705615 original size:12 final size:12
Alignment explanation
Indices: 76705583--76705619 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
76705573 AAATTATAAA
76705583 AATATTAAAATTT
1 AATA-TAAAATTT
76705596 -AT-TAAAATTT
1 AATATAAAATTT
76705606 AATATAAAATTT
1 AATATAAAATTT
76705618 AA
1 AA
76705620 AAAAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 8 0.36
11 2 0.09
12 12 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
AATATAAAATTT
Found at i:76706465 original size:20 final size:20
Alignment explanation
Indices: 76706433--76706484 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
76706423 ATTTGTTATT
*
76706433 TTTCATATT-TTTTAAATAAG
1 TTTC-TATTATTTTAAATAAA
*
76706453 TTTCTATTATTTTCAATAAA
1 TTTCTATTATTTTAAATAAA
*
76706473 TTT-TATAATTTT
1 TTTCTATTATTTT
76706485 TGAAAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTCTATTATTTTAAATAAA
Found at i:76706564 original size:38 final size:35
Alignment explanation
Indices: 76706514--76706607 Score: 93
Period size: 33 Copynumber: 2.7 Consensus size: 35
76706504 TCAATGGGAA
**
76706514 TTTATATAATTTTTTTAACTTTTTTAAGTTTTAATAAT
1 TTTATATAA-TTTTTTAAAATTTTTAA-TTTT-ATAAT
* *
76706552 TTTATATTATTTTTTAAAATTTTTAATTTTTTAA-
1 TTTATATAATTTTTTAAAATTTTTAATTTTATAAT
* *
76706586 TTT-TAGAATTTTTGAAAATTTT
1 TTTATATAATTTTTTAAAATTTT
76706608 ATTTTTTTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
33 16 0.33
34 3 0.06
35 3 0.06
36 4 0.08
37 15 0.31
38 8 0.16
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (35 bp):
TTTATATAATTTTTTAAAATTTTTAATTTTATAAT
Found at i:76706582 original size:8 final size:8
Alignment explanation
Indices: 76706524--76706617 Score: 53
Period size: 8 Copynumber: 11.0 Consensus size: 8
76706514 TTTATATAAT
76706524 TTTTTTAA
1 TTTTTTAA
76706532 CTTTTTTAA
1 -TTTTTTAA
*
76706541 GTTTTAATAA
1 -TTTT-TTAA
*
76706551 TTTTATATTA
1 TTTT-T-TAA
76706561 TTTTTTAAA
1 TTTTTT-AA
*
76706570 ATTTTTAA
1 TTTTTTAA
76706578 TTTTTTAA
1 TTTTTTAA
**
76706586 TTTTAGAA
1 TTTTTTAA
*
76706594 TTTTTGAA
1 TTTTTTAA
** *
76706602 AATTTTAT
1 TTTTTTAA
76706610 TTTTTTAA
1 TTTTTTAA
76706618 AAATTTCAAG
Statistics
Matches: 65, Mismatches: 17, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
8 32 0.49
9 24 0.37
10 9 0.14
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (8 bp):
TTTTTTAA
Found at i:76706637 original size:49 final size:49
Alignment explanation
Indices: 76706561--76706657 Score: 113
Period size: 49 Copynumber: 2.0 Consensus size: 49
76706551 TTTTATATTA
* * * * * *
76706561 TTTTTTAAAATTTTTAATTTTTTAATTTTAGAATTTTTGAAAATTTTAT
1 TTTTTTAAAAATTTCAAGTTATAAATTTTAGAATTTTAGAAAATTTTAT
** *
76706610 TTTTTTAAAAATTTCAAGTTATAAATTTTTTAATTTTAGAATATTTTA
1 TTTTTTAAAAATTTCAAGTTATAAATTTTAGAATTTTAGAAAATTTTA
76706658 GAATTTTGTA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (49 bp):
TTTTTTAAAAATTTCAAGTTATAAATTTTAGAATTTTAGAAAATTTTAT
Found at i:76708468 original size:9 final size:9
Alignment explanation
Indices: 76708451--76708552 Score: 61
Period size: 9 Copynumber: 11.4 Consensus size: 9
76708441 AATGTGTATG
*
76708451 TATTATATA
1 TATTTTATA
76708460 TATTTTATA
1 TATTTTATA
*
76708469 CATTTTATA
1 TATTTTATA
*
76708478 TATTATATA
1 TATTTTATA
*
76708487 TA-TATATA
1 TATTTTATA
76708495 T-TTATTATA
1 TATT-TTATA
76708504 TATTTATGTATA
1 TA-TT-T-TATA
76708516 TATTTTA-A
1 TATTTTATA
**
76708524 TATCATAT-
1 TATTTTATA
*
76708532 TA-TTCATA
1 TATTTTATA
*
76708540 TATTTTTTA
1 TATTTTATA
76708549 TATT
1 TATT
76708553 ATGTAAATAT
Statistics
Matches: 73, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
7 2 0.03
8 18 0.25
9 40 0.55
10 1 0.01
11 6 0.08
12 6 0.08
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (9 bp):
TATTTTATA
Found at i:76708503 original size:35 final size:33
Alignment explanation
Indices: 76708454--76708554 Score: 100
Period size: 35 Copynumber: 2.9 Consensus size: 33
76708444 GTGTATGTAT
*
76708454 TATATATATT-TTATACATTTTATATATTATATA
1 TATATATATTATTATATATTTTATATATTAT-TA
76708487 TATATATATTTATTATATATTTATGTATATATT-TTA
1 TATATATA-TTATTATATA-TT-T-TATATATTATTA
*
76708523 -ATATCATATTATTCATATATTTTTTATATTAT
1 TATAT-ATATTATT-ATATATTTTATATATTAT
76708555 GTAAATATTT
Statistics
Matches: 58, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
33 15 0.26
34 4 0.07
35 17 0.29
36 12 0.21
37 2 0.03
38 8 0.14
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (33 bp):
TATATATATTATTATATATTTTATATATTATTA
Found at i:76708519 original size:19 final size:19
Alignment explanation
Indices: 76708454--76708519 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
76708444 GTGTATGTAT
* *
76708454 TATATATATTTTATACAT-
1 TATATATATTATATATATA
*
76708472 TTTATATATTATATATATA
1 TATATATATTATATATATA
* *
76708491 TATATTTATTATATATTTA
1 TATATATATTATATATATA
*
76708510 TGTATATATT
1 TATATATATT
76708520 TTAATATCAT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
18 15 0.38
19 24 0.62
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (19 bp):
TATATATATTATATATATA
Found at i:76708531 original size:25 final size:23
Alignment explanation
Indices: 76708455--76708590 Score: 108
Period size: 25 Copynumber: 6.0 Consensus size: 23
76708445 TGTATGTATT
*
76708455 ATATATATT-T-TATACATTTT-
1 ATATATATTATGTATATATTTTA
*
76708475 ATATAT-TATATATATATATATTTA
1 ATATATAT-TATGTATATAT-TTTA
*
76708499 TTATATATTTATGTATATATTTTA
1 ATATATA-TTATGTATATATTTTA
76708523 ATATCATATTAT-TCATATATTTT-
1 ATAT-ATATTATGT-ATATATTTTA
*
76708546 -T-TATATTATGTAAATATTTTCA
1 ATATATATTATGTATATATTTT-A
*
76708568 ATACTACATTATGTATATATTTT
1 ATA-TATATTATGTATATATTTT
76708591 TGTCTATATT
Statistics
Matches: 94, Mismatches: 7, Indels: 25
0.75 0.06 0.20
Matches are distributed among these distances:
19 1 0.01
20 22 0.23
21 3 0.03
22 7 0.07
23 5 0.05
24 25 0.27
25 30 0.32
26 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (23 bp):
ATATATATTATGTATATATTTTA
Found at i:76708551 original size:11 final size:11
Alignment explanation
Indices: 76708453--76708551 Score: 63
Period size: 11 Copynumber: 8.5 Consensus size: 11
76708443 TGTGTATGTA
*
76708453 TTATATATATT
1 TTATATATTTT
*
76708464 TTATACATTTT
1 TTATATATTTT
* *
76708475 ATATATTATATAT
1 TTATA-TAT-TTT
* *
76708488 ATATATATTTA
1 TTATATATTTT
76708499 TTATATATTTAT
1 TTATATATTT-T
*
76708511 GTATATATTTT
1 TTATATATTTT
* *
76708522 AATATCATATTAT
1 -TTAT-ATATTTT
*
76708535 TCATATATTTT
1 TTATATATTTT
76708546 TTATAT
1 TTATAT
76708552 TATGTAAATA
Statistics
Matches: 67, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
11 35 0.52
12 19 0.28
13 13 0.19
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (11 bp):
TTATATATTTT
Found at i:76708586 original size:45 final size:45
Alignment explanation
Indices: 76708489--76708591 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 45
76708479 ATTATATATA
* *
76708489 TATATATTTATTATATATTTATGTATATATTTTAATATCATATTAT
1 TATATATTT-TTATATATTTATGTAAATATTTTAATATCACATTAT
76708535 TCATATATTTTT-TATA-TTATGTAAATATTTTCAATA-CTACATTAT
1 T-ATATATTTTTATATATTTATGTAAATATTTT-AATATC-ACATTAT
76708580 GTATATATTTTT
1 -TATATATTTTT
76708592 GTCTATATTG
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
44 15 0.29
45 24 0.47
46 4 0.08
47 8 0.16
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (45 bp):
TATATATTTTTATATATTTATGTAAATATTTTAATATCACATTAT
Found at i:76708767 original size:2 final size:2
Alignment explanation
Indices: 76708760--76708784 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76708750 ATATCATTAT
76708760 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
76708785 GTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76708889 original size:26 final size:26
Alignment explanation
Indices: 76708860--76708911 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76708850 ATTATGTATA
*
76708860 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
76708886 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
76708912 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:76709381 original size:26 final size:26
Alignment explanation
Indices: 76709345--76709480 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
76709335 TGATACAAAT
76709345 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
76709371 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
76709397 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
76709423 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
76709449 TGATAATGGGTTAAGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
76709475 TGATAA
1 TGATAA
76709481 GAATTTCATG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:76714681 original size:23 final size:23
Alignment explanation
Indices: 76714655--76714736 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 23
76714645 CCTTTTTCGT
76714655 TTTATTTATTTTA-TTTTTCT-TTA
1 TTTATTT-TTTTAGTTTTT-TATTA
*
76714678 TTTACTTTTTTAGTTTTTTATTA
1 TTTATTTTTTTAGTTTTTTATTA
*
76714701 TTTATTTGTCCTTTA-TTTTTTATTTG
1 TTTATTT-T--TTTAGTTTTTTA-TTA
76714727 TTTATTTTTT
1 TTTATTTTTT
76714737 AATTTGTATT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
22 6 0.12
23 22 0.44
24 1 0.02
25 8 0.16
26 13 0.26
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.77
Consensus pattern (23 bp):
TTTATTTTTTTAGTTTTTTATTA
Found at i:76714694 original size:37 final size:38
Alignment explanation
Indices: 76714647--76714718 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 38
76714637 TTGTTTATCC
* *
76714647 TTTTTCGTTTTAT-TTATTTTATTT-TTCTTTATTTACT
1 TTTTTAGTTTTATATTA-TTTATTTGTCCTTTATTTACT
*
76714684 TTTTTAGTTTTTTATTATTTATTTGTCCTTTATTT
1 TTTTTAGTTTTATATTATTTATTTGTCCTTTATTT
76714719 TTTATTTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
37 18 0.60
38 12 0.40
ACGTcount: A:0.14, C:0.07, G:0.04, T:0.75
Consensus pattern (38 bp):
TTTTTAGTTTTATATTATTTATTTGTCCTTTATTTACT
Found at i:76714722 original size:7 final size:7
Alignment explanation
Indices: 76714663--76714737 Score: 53
Period size: 7 Copynumber: 9.7 Consensus size: 7
76714653 GTTTTATTTA
76714663 TTTTATT
1 TTTTATT
76714670 TTTCT-TT
1 TTT-TATT
*
76714677 ATTTACTT
1 TTTTA-TT
76714685 TTTTAGTT
1 TTTTA-TT
76714693 TTTTATT
1 TTTTATT
*
76714700 ATTTATTT
1 TTTTA-TT
76714708 GTCCTTTATT
1 -T--TTTATT
76714718 TTTTATT
1 TTTTATT
76714725 TGTTTATT
1 T-TTTATT
76714733 TTTTA
1 TTTTA
76714738 ATTTGTATTA
Statistics
Matches: 55, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
6 1 0.02
7 24 0.44
8 23 0.42
9 1 0.02
10 2 0.04
11 4 0.07
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.76
Consensus pattern (7 bp):
TTTTATT
Found at i:76714736 original size:15 final size:15
Alignment explanation
Indices: 76714654--76714748 Score: 68
Period size: 15 Copynumber: 5.9 Consensus size: 15
76714644 TCCTTTTTCG
*
76714654 TTTTATTTATTT-TAT
1 TTTTATTTGTTTAT-T
* *
76714669 TTTTCTTTATTTACTT
1 TTTTATTTGTTTA-TT
76714685 TTTTAGTTT-TTTATT
1 TTTTA-TTTGTTTATT
*
76714700 ATTTATTTGTCCTTTATT
1 TTTTATTTG---TTTATT
76714718 TTTTATTTGTTTATT
1 TTTTATTTGTTTATT
76714733 TTTTAATTTGTATTAT
1 TTTT-ATTTGT-TTAT
76714749 GTAAAATTTA
Statistics
Matches: 67, Mismatches: 4, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
14 3 0.04
15 27 0.40
16 15 0.22
17 8 0.12
18 14 0.21
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (15 bp):
TTTTATTTGTTTATT
Found at i:76714737 original size:22 final size:23
Alignment explanation
Indices: 76714663--76714746 Score: 66
Period size: 22 Copynumber: 3.6 Consensus size: 23
76714653 GTTTTATTTA
*
76714663 TTTTA-TTTTTCTTTATTTACTT
1 TTTTATTTTTTATTTATTTACTT
*
76714685 TTTTAGTTTTTTA-TTATTTATTT
1 TTTTA-TTTTTTATTTATTTACTT
*
76714708 GTCCTTTATTTTTTATTTGTTTA-TT
1 -T--TTTATTTTTTATTTATTTACTT
* *
76714733 TTTTAATTTGTATT
1 TTTTATTTTTTATT
76714747 ATGTAAAATT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.31
23 9 0.18
24 7 0.14
25 9 0.18
26 10 0.20
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.75
Consensus pattern (23 bp):
TTTTATTTTTTATTTATTTACTT
Found at i:76715717 original size:25 final size:25
Alignment explanation
Indices: 76715689--76715740 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
76715679 AAGTTCTTGT
76715689 ATGTAAGAT-AAATTTTCGAGTTTGA
1 ATGTAAGATAAAATTTT-GAGTTTGA
76715714 ATGTAAGATAAAATTTTGAGTTTGA
1 ATGTAAGATAAAATTTTGAGTTTGA
76715739 AT
1 AT
76715741 ATGCCTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (25 bp):
ATGTAAGATAAAATTTTGAGTTTGA
Found at i:76719106 original size:20 final size:20
Alignment explanation
Indices: 76719078--76719121 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
76719068 TACCAACTTG
*
76719078 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
76719098 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
76719118 CAAC
1 CAAC
76719122 TTAAGAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:76719325 original size:41 final size:42
Alignment explanation
Indices: 76719218--76719325 Score: 110
Period size: 43 Copynumber: 2.6 Consensus size: 42
76719208 TGTGATATCT
* ** * *
76719218 CAGATATGGTCTTACATGGGATCTCATATCGATGCCAATAGTC
1 CAGATATGGTCTTACACGAAATCTCATATCAATGCCAATA-CC
* * * *
76719261 CAGCTATGGTATTGCACGAAATCTCATATCAATTCCAAT-CC
1 CAGATATGGTCTTACACGAAATCTCATATCAATGCCAATACC
*
76719302 CAGATATGGTCTTACACGTAATCT
1 CAGATATGGTCTTACACGAAATCT
76719326 TAACTAACCC
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 21 0.40
43 31 0.60
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (42 bp):
CAGATATGGTCTTACACGAAATCTCATATCAATGCCAATACC
Found at i:76723861 original size:43 final size:42
Alignment explanation
Indices: 76723814--76723958 Score: 150
Period size: 43 Copynumber: 3.4 Consensus size: 42
76723804 AATGCGATAT
*
76723814 CCCAGATATGGTCTTACATAAGATCTCATATCGATACCAATAG
1 CCCAGATATGGTCTTACATAA-ATCTCATATCGATGCCAATAG
* *
76723857 CCCAGCTATGGTCTTACACGAAATCTCATATCGATGCCAATAG
1 CCCAGATATGGTCTTACA-TAAATCTCATATCGATGCCAATAG
* * * * * * *
76723900 CCTAGTTATAGTC-TACGTAAAATATCATATCGATGTC-ATAT
1 CCCAGATATGGTCTTACAT-AAATCTCATATCGATGCCAATAG
*
76723941 CCTAGATATGGTCTTACA
1 CCCAGATATGGTCTTACA
76723959 CGTAATCTTA
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
41 14 0.16
42 22 0.26
43 47 0.55
44 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (42 bp):
CCCAGATATGGTCTTACATAAATCTCATATCGATGCCAATAG
Found at i:76727727 original size:12 final size:11
Alignment explanation
Indices: 76727710--76727806 Score: 69
Period size: 12 Copynumber: 8.6 Consensus size: 11
76727700 TTCTAAATGA
76727710 TTTAAAAATAT
1 TTTAAAAATAT
76727721 CTTTAAAAATGAT
1 -TTTAAAAAT-AT
76727734 TTTAAAAATTAT
1 TTTAAAAA-TAT
76727746 ATTT-AAAAT-T
1 -TTTAAAAATAT
*
76727756 TTAAAAAATAAT
1 TTTAAAAAT-AT
76727768 TTT-AAAAT-T
1 TTTAAAAATAT
*
76727777 TTTAAAATATACA
1 TTTAAAA-ATA-T
76727790 TTT-AAAATAT
1 TTTAAAAATAT
*
76727800 TATAAAA
1 TTTAAAA
76727807 TAAATAATAA
Statistics
Matches: 69, Mismatches: 5, Indels: 23
0.71 0.05 0.24
Matches are distributed among these distances:
9 6 0.09
10 11 0.16
11 14 0.20
12 29 0.42
13 9 0.13
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (11 bp):
TTTAAAAATAT
Found at i:76727758 original size:21 final size:20
Alignment explanation
Indices: 76727732--76727807 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 20
76727722 TTTAAAAATG
76727732 ATTTTAAAAATTATATTTAAA
1 ATTTTAAAAATTA-ATTTAAA
*
76727753 ATTTTAAAAAATAATTTTAAA
1 ATTTTAAAAATTAA-TTTAAA
*
76727774 ATTTTTAAAATATACATTTAAA
1 ATTTTAAAAAT-TA-ATTTAAA
*
76727796 ATATTATAAAAT
1 ATTTTA-AAAAT
76727808 AAATAATAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
20 1 0.02
21 27 0.59
22 12 0.26
23 6 0.13
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTTAAAAATTAATTTAAA
Found at i:76727779 original size:22 final size:22
Alignment explanation
Indices: 76727733--76727806 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
76727723 TTAAAAATGA
*
76727733 TTTT-AAAAATTATATTTAAAA-
1 TTTTAAAAAATAAT-TTTAAAAT
76727754 TTTTAAAAAATAATTTTAAAAT
1 TTTTAAAAAATAATTTTAAAAT
*
76727776 TTTTAAAATATACA-TTTAAAAT
1 TTTTAAAAAATA-ATTTTAAAAT
*
76727798 ATTATAAAA
1 -TTTTAAAA
76727807 TAAATAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
21 11 0.24
22 27 0.59
23 8 0.17
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTTAAAAAATAATTTTAAAAT
Found at i:76727820 original size:43 final size:42
Alignment explanation
Indices: 76727732--76727817 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
76727722 TTTAAAAATG
* * **
76727732 ATTTTAAAAATTATATTTAAAATTTTAAAAAATAATTTTAAA
1 ATTTTAAAAATTACATTTAAAATATTAAAAAATAATAATAAA
* *
76727774 ATTTTTAAAATATACATTTAAAATATTATAAAATAAATAATAAA
1 ATTTTAAAAAT-TACATTTAAAATATTAAAAAAT-AATAATAAA
76727818 TTTGAAAGGT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
42 10 0.28
43 19 0.53
44 7 0.19
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (42 bp):
ATTTTAAAAATTACATTTAAAATATTAAAAAATAATAATAAA
Found at i:76727928 original size:38 final size:38
Alignment explanation
Indices: 76727886--76727959 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
76727876 TTGTATTTAA
* *
76727886 AATTTAAAAAATA-ATATTTAAATTTTTTTAAAAATAAT
1 AATTTAAAAAATATATATTTAAA-ATTTTAAAAAATAAT
*
76727924 AATTTTAAAAATATATATTTAAAATTTTAAAAAATA
1 AATTTAAAAAATATATATTTAAAATTTTAAAAAATA
76727960 TATATTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 23 0.72
39 9 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (38 bp):
AATTTAAAAAATATATATTTAAAATTTTAAAAAATAAT
Found at i:76727974 original size:37 final size:39
Alignment explanation
Indices: 76727892--76727971 Score: 103
Period size: 38 Copynumber: 2.1 Consensus size: 39
76727882 TTAAAATTTA
* * *
76727892 AAAAATA-ATATTTAAATTTTTTTAAAAATAATAATTTT
1 AAAAATATATATTTAAATATTTTAAAAAATAATAATTAT
76727930 AAAAATATATATTTAAA-ATTTTAAAAAAT-ATATATTAT
1 AAAAATATATATTTAAATATTTTAAAAAATAATA-ATTAT
76727968 AAAA
1 AAAA
76727972 TATTTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 3 0.08
38 25 0.68
39 9 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (39 bp):
AAAAATATATATTTAAATATTTTAAAAAATAATAATTAT
Found at i:76727977 original size:25 final size:24
Alignment explanation
Indices: 76727925--76728003 Score: 92
Period size: 23 Copynumber: 3.3 Consensus size: 24
76727915 AAAAATAATA
*
76727925 ATTTTAAAAATATATATTTAAAAT
1 ATTTAAAAAATATATATTTAAAAT
76727949 -TTTAAAAAATATATATTATAAAAT
1 ATTTAAAAAATATATATT-TAAAAT
* *
76727973 ATTT--AAAATATACATTTAACAT
1 ATTTAAAAAATATATATTTAAAAT
76727995 ATTATAAAA
1 ATT-TAAAA
76728004 TCAATAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
22 8 0.17
23 28 0.60
24 6 0.13
25 5 0.11
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTTAAAAAATATATATTTAAAAT
Found at i:76727991 original size:60 final size:60
Alignment explanation
Indices: 76727862--76727980 Score: 159
Period size: 60 Copynumber: 1.9 Consensus size: 60
76727852 TAAATGTTTT
* * * * *
76727862 ATAATATTAAAAATTTGTATTTAAAATTTAAAAAATAATATTTAAATTTTTTTAAAAATA
1 ATAATTTTAAAAATATATATTTAAAATTTAAAAAATAATATTTAAATATATTTAAAAATA
76727922 ATAATTTTAAAAATATATATTTAAAATTTTAAAAAATATATATTATAAA-ATATTTAAAA
1 ATAATTTTAAAAATATATATTTAAAA-TTTAAAAAATA-ATATT-TAAATATATTTAAAA
76727981 TATACATTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
60 23 0.45
61 11 0.22
62 13 0.25
63 4 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (60 bp):
ATAATTTTAAAAATATATATTTAAAATTTAAAAAATAATATTTAAATATATTTAAAAATA
Found at i:76728033 original size:24 final size:24
Alignment explanation
Indices: 76727998--76728051 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
76727988 TTAACATATT
76727998 ATAAAATCAAT-AATAAACAAACAA
1 ATAAAATCAATAAAT-AACAAACAA
* *
76728022 ATAAAA-CAAATAAATGACAAATAA
1 ATAAAATC-AATAAATAACAAACAA
76728046 ATAAAA
1 ATAAAA
76728052 AAAACTGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 1 0.04
24 22 0.85
25 3 0.12
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (24 bp):
ATAAAATCAATAAATAACAAACAA
Found at i:76730471 original size:4 final size:4
Alignment explanation
Indices: 76730462--76730491 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
76730452 TTAAAAATAA
76730462 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
76730492 TCACTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:76731264 original size:17 final size:18
Alignment explanation
Indices: 76731237--76731298 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
76731227 TATAAAAAAG
*
76731237 AAAAAGGACAAACAAATA
1 AAAAAAGACAAACAAATA
* *
76731255 AAAATA-ACAAAAAAATGAAA
1 AAAAAAGACAAACAAAT---A
76731275 AAAAAAGACAAACAAATA
1 AAAAAAGACAAACAAATA
76731293 AAAAAA
1 AAAAAA
76731299 ATAAGAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
17 9 0.26
18 11 0.31
20 6 0.17
21 9 0.26
ACGTcount: A:0.79, C:0.08, G:0.06, T:0.06
Consensus pattern (18 bp):
AAAAAAGACAAACAAATA
Found at i:76731992 original size:33 final size:33
Alignment explanation
Indices: 76731939--76732006 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
76731929 AGATTAATTT
*
76731939 ATATGTTATATATTATTATATTAAATTAGTTAA
1 ATATGTTATATATAATTATATTAAATTAGTTAA
* * *
76731972 ATATTTTATGTATAATTATATTAAATTATTTAA
1 ATATGTTATATATAATTATATTAAATTAGTTAA
76732005 AT
1 AT
76732007 CTTATTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (33 bp):
ATATGTTATATATAATTATATTAAATTAGTTAA
Found at i:76732022 original size:64 final size:65
Alignment explanation
Indices: 76731926--76732070 Score: 156
Period size: 65 Copynumber: 2.2 Consensus size: 65
76731916 ATATTTAAAA
* * * *
76731926 ATTAGATTAATTTATATGTTATATATTATTATA-TTAA-A-TTAGTTAAATATTTTATGTATAAT
1 ATTAAATT-ATTTAAATCTTATATATTATTATATTTAATATTTA--TAAATATTTTATAT-TAAT
76731988 TA-T
62 TACT
*
76731991 ATTAAATTATTTAAATCTTATTTATTATTATATTTAATATTTATAAATATTTTATATTAATTACT
1 ATTAAATTATTTAAATCTTATATATTATTATATTTAATATTTATAAATATTTTATATTAATTACT
*
76732056 -TAAAAATTATTTAAA
1 AT-TAAATTATTTAAA
76732071 ACTTGTATTT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
64 28 0.41
65 37 0.54
66 1 0.01
67 3 0.04
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (65 bp):
ATTAAATTATTTAAATCTTATATATTATTATATTTAATATTTATAAATATTTTATATTAATTACT
Found at i:76732062 original size:24 final size:25
Alignment explanation
Indices: 76732012--76732067 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
76732002 TAAATCTTAT
* *
76732012 TTATTATTATATTTAATATTTATAAA
1 TTATT-TTATATTTAATACTTAAAAA
76732038 -TATTTTATA-TTAATTACTTAAAAA
1 TTATTTTATATTTAA-TACTTAAAAA
76732062 TTATTT
1 TTATTT
76732068 AAAACTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 4 0.15
24 13 0.50
25 9 0.35
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
TTATTTTATATTTAATACTTAAAAA
Found at i:76732924 original size:25 final size:24
Alignment explanation
Indices: 76732878--76732934 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
76732868 TTTTATTTAC
* *
76732878 ATATTGTTATTAAATTGCTATTATT
1 ATATTTTTATTAAATTGATATTA-T
*
76732903 TTATTTTTATT-AATTGGATATTAT
1 ATATTTTTATTAAATT-GATATTAT
76732927 ATATTTTT
1 ATATTTTT
76732935 TATTTTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (24 bp):
ATATTTTTATTAAATTGATATTAT
Found at i:76740133 original size:15 final size:15
Alignment explanation
Indices: 76740060--76740169 Score: 52
Period size: 15 Copynumber: 7.4 Consensus size: 15
76740050 ATTTCAATTT
76740060 TATTTTAATAATAAA
1 TATTTTAATAATAAA
*
76740075 T-TTTATTATAAT-AA
1 TATTT-TAATAATAAA
* *
76740089 -ATTTAAATGA-AAA
1 TATTTTAATAATAAA
** *
76740102 TA-TCCAAT-ATTAA
1 TATTTTAATAATAAA
76740115 TATTTTAATAATAAA
1 TATTTTAATAATAAA
*
76740130 TATTTATTATAATTATAAA
1 TA--T-TT-TAATAATAAA
*
76740149 TATATTAATAATAAA
1 TATTTTAATAATAAA
*
76740164 TGTTTT
1 TATTTT
76740170 GTAGTATAAA
Statistics
Matches: 69, Mismatches: 15, Indels: 22
0.65 0.14 0.21
Matches are distributed among these distances:
12 1 0.01
13 13 0.19
14 13 0.19
15 26 0.38
16 1 0.01
17 2 0.03
18 2 0.03
19 11 0.16
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
TATTTTAATAATAAA
Found at i:76740142 original size:19 final size:19
Alignment explanation
Indices: 76740115--76740151 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
76740105 CCAATATTAA
*
76740115 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
76740134 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
76740152 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:76748763 original size:101 final size:101
Alignment explanation
Indices: 76748599--76748922 Score: 368
Period size: 101 Copynumber: 3.2 Consensus size: 101
76748589 TTGGCACAGC
** * *
76748599 AGTTTGGTGTGACAGTCCA-TTTCGTCCTAATTTAAATGCTTATAGAAATGTCCTCTTAATTTTG
1 AGTTTGGCATGACAATCCATTTTC-TCCTAATTTAAATGCTTAAAGAAATGTCCTCTTAATTTTG
* * *
76748663 CATTCAATTAAATTTTGACAGGGGAGTTTGGCTGGAT
65 CATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
** * * **
76748700 AGTTTGGCATGACAATTTATTTTGT-CTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTG
1 AGTTTGGCATGACAATCCATTTTCTCCT-AATTTAAATGCTTAAAGAAATGTCCTCTTAATTTTG
* * *
76748764 CATTCAATCAACTTTTGGCAGGGTAGTTTGGTTGGGT
65 CATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
* * * * *
76748801 AGCTTGGCATCACAATCCATTTTCTCCTAATTTGAATGTTTATAA-AAATTTCCTCTTAATTTTG
1 AGTTTGGCATGACAATCCATTTTCTCCTAATTTAAATGCTTA-AAGAAATGTCCTCTTAATTTTG
**
76748865 CATTCAATT-AATTTTGGCAGAATAGTTTGGCTGGGT
65 CATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
* *
76748901 AGTTTGGCATGATAGTCCATTT
1 AGTTTGGCATGACAATCCATTT
76748923 CGCAAATGTC
Statistics
Matches: 183, Mismatches: 36, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
100 43 0.23
101 133 0.73
102 7 0.04
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (101 bp):
AGTTTGGCATGACAATCCATTTTCTCCTAATTTAAATGCTTAAAGAAATGTCCTCTTAATTTTGC
ATTCAATTAAATTTTGGCAGGGTAGTTTGGCTGGGT
Found at i:76748946 original size:181 final size:182
Alignment explanation
Indices: 76748757--76749107 Score: 474
Period size: 181 Copynumber: 1.9 Consensus size: 182
76748747 ATGTCTTCCA
* * * * *
76748757 AATTTTGCATTCAATCAACTTTTGGCAGGGTAGTTTGGTTGGGTAGCTTGGCATCACAATCCATT
1 AATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTAGCTGGGTAGCTTGGCATCACAATCCATT
*
76748822 TT-CTCCTAATTTGAATGTTTATAAAAAT-TTCCTCTTAATTTTGCATTCAATTAATTTTGGCA-
66 TTGCTCC-AATTTGAATGTTTATAAAAATGTT-CTCTTAATTTTGCATTCAATCAATTTTGGCAG
* * * * *
76748884 GAATAGTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTCGCAAATGTCCTATT
129 GAACAATTTGGCTAGGTAATTTGGCATGACAGTCCATTTCGCAAATGTCCTATT
* * * * *
76748938 AATTTTGCATTCAATCAAATTTTGGTAAGGCAGTTTAGCTGGGTAGTTTGGCATGACAGTCTATT
1 AATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTAGCTGGGTAGCTTGGCATCACAATCCATT
* * *
76749003 TTGTTCCAATTTGAATGTTTATAGAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGG
66 TTGCTCCAATTTGAATGTTTATAAAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGA
* *
76749068 GCAATTTGGTTAGGTAATTTGGCATGACAGTCCATTTCGC
131 ACAATTTGGCTAGGTAATTTGGCATGACAGTCCATTTCGC
76749108 CTCAATTTGA
Statistics
Matches: 146, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
181 107 0.73
182 39 0.27
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (182 bp):
AATTTTGCATTCAATCAAATTTTGGCAAGGCAGTTTAGCTGGGTAGCTTGGCATCACAATCCATT
TTGCTCCAATTTGAATGTTTATAAAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGA
ACAATTTGGCTAGGTAATTTGGCATGACAGTCCATTTCGCAAATGTCCTATT
Found at i:76748990 original size:81 final size:80
Alignment explanation
Indices: 76748846--76749003 Score: 210
Period size: 81 Copynumber: 2.0 Consensus size: 80
76748836 ATGTTTATAA
* * * * * *
76748846 AAATTTCCTCTTAATTTTGCATTCAATTAATTTTGGCAGAATAGTTTGGCTGGGTAGTTTGGCAT
1 AAATGTCCTATTAATTTTGCATTCAATAAATTTTGGAAGAACAGTTTAGCTGGGTAGTTTGGCAT
*
76748911 GATAGTCCATTTCGC
66 GACAGTCCATTTCGC
*
76748926 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGTAAG-GCAGTTTAGCTGGGTAGTTTGGC
1 AAATGTCCTATTAATTTTGCATTCAAT-AAATTTTGG-AAGAACAGTTTAGCTGGGTAGTTTGGC
*
76748990 ATGACAGTCTATTT
64 ATGACAGTCCATTT
76749004 TGTTCCAATT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 25 0.37
81 40 0.60
82 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (80 bp):
AAATGTCCTATTAATTTTGCATTCAATAAATTTTGGAAGAACAGTTTAGCTGGGTAGTTTGGCAT
GACAGTCCATTTCGC
Found at i:76749055 original size:101 final size:101
Alignment explanation
Indices: 76748926--76749264 Score: 416
Period size: 101 Copynumber: 3.3 Consensus size: 101
76748916 TCCATTTCGC
* * * *
76748926 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGTAAGGCAGTTTAGCTGGGTAGTTTGGCA
1 AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTGGGTAGTTTGGCA
* *
76748991 TGACAGTCTATTTTGTTCCAATTTGAATGTTTATAG
66 TGACAGTCCATTTTGTTCCAATTTGAATGCTTATAG
* * * * *
76749027 AAATGTTCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGGCAATTTGGTTAGGTAATTTGGC
1 AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTA-GGGCAGTTTGGCTGGGTAGTTTGGC
* * *
76749091 ATGACAGTCCATTTCG-CCTCAATTTGAATCCTTATAG
65 ATGACAGTCCATTTTGTTC-CAATTTGAATGCTTATAG
* * * * *
76749128 AAATGTTTTGTTAAATTTGCATTCAATCCAATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGC
1 AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGC-TGGGTAGTTTGGC
* *
76749193 ATGATAGTCCATCTT-TTCCAAATTTGAATGCTTATAG
65 ATGACAGTCCATTTTGTTCC-AATTTGAATGCTTATAG
76749230 AAAT-TTCCTCTTAATTTTGCATTCAATCAAATTTT
1 AAATGTT-CTCTTAATTTTGCATTCAATCAAATTTT
76749265 ATTATTTGTA
Statistics
Matches: 199, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
100 10 0.05
101 112 0.56
102 77 0.39
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (101 bp):
AAATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTGGGTAGTTTGGCA
TGACAGTCCATTTTGTTCCAATTTGAATGCTTATAG
Found at i:76749149 original size:282 final size:284
Alignment explanation
Indices: 76748644--76749204 Score: 731
Period size: 282 Copynumber: 2.0 Consensus size: 284
76748634 ATGCTTATAG
* * * * *
76748644 AAATGTCCTCTTAATTTTGCATTCAATTAAATTTTGACAGGGGAGTTTGGCTGGATAGTTTGGCA
1 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGACAAGGCAGTTTAGCTGGATAGTTTGGCA
*
76748709 TGACAATTTATTTTGTCTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTGCATTCAATCA
66 TGACAATCTATTTTGTCTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTGCATTCAATCA
* * * * * *
76748774 ACTTTTGGCAGGGTAGTTTGGTTGGGTAGCTTGGCATCACAATCCATTTTCTCCTAATTTGAATG
131 ACTTTTGGCAGGGCAATTTGGTTAGGTAACTTGGCATCACAATCCATTTTCGCCTAATTTGAATC
* * *
76748839 TTTATAAAAATTTCCTCTTAATTTTGCATTCAAT-TAATTTTGGCAGAATAGTTTGGC-TGGGTA
196 CTTATAAAAATTTCCTCTTAAATTTGCATTCAATCCAATTTTGGCAGAATAGTTTGGCTTGGGTA
76748902 GTTTGGCATGATAGTCCATTTCGC
261 GTTTGGCATGATAGTCCATTTCGC
** *
76748926 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGTAAGGCAGTTTAGCTGGGTAGTTTGGCA
1 AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGACAAGGCAGTTTAGCTGGATAGTTTGGCA
* * * * **
76748991 TGACAGTCTATTTTGT-TCCAATTTGAATGTTTATAGAAATGT-TCTCTTAATTTTGCATTCAAT
66 TGACAATCTATTTTGTCT-CAATTTAAATGCTTAAAGAAATGTCT-TCCAAATTTTGCATTCAAT
* * *
76749054 CAA-TTTTGGCAGGGGCAATTTGGTTAGGTAATTTGGCATGACAGTCCA-TTTCGCCTCAATTTG
129 CAACTTTTGGCA-GGGCAATTTGGTTAGGTAACTTGGCATCACAATCCATTTTCGCCT-AATTTG
* * * * **
76749117 AATCCTTATAGAAATGTT-TTGTTAAATTTGCATTCAATCCAATTTTGGTAGGGTAGTTTGGCTT
192 AATCCTTATAAAAAT-TTCCTCTTAAATTTGCATTCAATCCAATTTTGGCAGAATAGTTTGGCTT
76749181 GGGTAGTTTGGCATGATAGTCCAT
256 GGGTAGTTTGGCATGATAGTCCAT
76749205 CTTTTCCAAA
Statistics
Matches: 239, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
281 17 0.07
282 176 0.74
283 21 0.09
284 25 0.10
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (284 bp):
AAATGTCCTATTAATTTTGCATTCAATCAAATTTTGACAAGGCAGTTTAGCTGGATAGTTTGGCA
TGACAATCTATTTTGTCTCAATTTAAATGCTTAAAGAAATGTCTTCCAAATTTTGCATTCAATCA
ACTTTTGGCAGGGCAATTTGGTTAGGTAACTTGGCATCACAATCCATTTTCGCCTAATTTGAATC
CTTATAAAAATTTCCTCTTAAATTTGCATTCAATCCAATTTTGGCAGAATAGTTTGGCTTGGGTA
GTTTGGCATGATAGTCCATTTCGC
Found at i:76749430 original size:101 final size:101
Alignment explanation
Indices: 76749277--76754277 Score: 4052
Period size: 101 Copynumber: 51.3 Consensus size: 101
76749267 TATTTGTATG
** * * **
76749277 AATGTCCTCTTAATTTTG-----AATCAAATTTTGAAAGAGTAGTTTGATTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76749337 GGCAAATCCATTTCGT-CCAATTTGAAAGCTTACA-A
66 GAC-AGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * *
76749372 AGATGTCCTCTTAATTCTGTATTAAATCAAATTTTGGCAGGGTAGTTTGGCTGTGTAGTTCGACA
1 A-ATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * * * ** *
76749437 TTATAGTCCATTTCATCCAAATTTGAGTGCCCATTGA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* *
76749474 AATGTCCTCTTAATTTTTCATTCAATCAAAATTTGGCAGGGCAGTTTGGC---------T----T
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76749526 GACAGTCCATTT-TTTCCAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * *
76749561 AATATTCTCTTAATTTTGCATTCAATCAAATTTTAGCAGGGCAGTTTGGCTGGATAGTTTAGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* ** *
76749626 GACAGTCCATTTTGTCCCAATTTGAATATTTATAAA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * *
76749662 AATATCCTCTTAATTTTGCATTTAATCAAATATTGGAAGGGCTGTTTGGCTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * * *
76749727 GGTAGTCTATTCCATCCCAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * *
76749763 AATGTCCTTTTAATATTGCATTCAATCAAATATTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCTT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* *
76749828 GACAGTCCATTTCGTCCCAATTTGAATGTTTAAAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* *
76749864 AATGTCCT-TTTATTTTGCATTCAATC-AATTTTGGTAGGG-A------------AGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * *
76749914 GACAGTCTATTTTGTCCCAATTTGAAAGTTTATTGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * *
76749950 AATGTCTTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGATAGTTTGCCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76750015 GACAGTTCATTTTGTCCCAATTTGAATGCTTATAAA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * *
76750051 AATATCCTCTTAATTTTGCATTTAATCAAATATTGGAAGGGCTGTTTGGCTAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * *
76750116 GGTAGTCTATTTTGTCCCAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * * *
76750152 AATGTCCTTTTAATATTACATTCTATCAAATATTGGCAAGGCAGTTTGGTTGGGTAGTTTGGCTT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* *
76750217 GATAGTCCATTTCGTCCCAATTTGAATGCTTATTGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
** *
76750253 AATGTTTTCTTAATTTTGCATTCAATC-AATTTTGGCA-GG-A-----------AAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76750304 GACAGTCCATTTTGTCCCAATTTGAAAGTTTATTA-A
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTA-TAGA
76750340 AATGTCCTCTTAATTTTGCATTCAATCAAATTTT------G--G--T---TGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76750392 GACCGTCCATTTCTTCCAAATTTGAAAT-CTTATAGA
66 GACAGTCCATTTCGTCCCAATTTG-AATGCTTATAGA
** * * **
76750428 AATGTTATCTTAATTTTGCAGTCAGTCAAATTTTGGCA----A----AAC-----AGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76750480 GATAGTCCATTTTGTCCCAATTTGAATACTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
** *
76750516 AATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGTAAGTTTTGCTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * *
76750580 GACAGTTTATTTCGTCCCAATTTGAATGTTTATCGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * ** * *
76750616 AATATCCTCTTAATTTTGCATTTAATCAAATTTTGGCAAGGAAATTTGGCTAGACATTTTGGAAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** *
76750681 GACTA-TCCATTTTATCCCAATTTAAACT-CTTATA-A
66 GAC-AGTCCATTTCGTCCCAATTTGAA-TGCTTATAGA
* ** *
76750716 AACTGTCCTCTTAATTTTGCATTCAATCAATTTTTGGTTGGGTAGTTTGGCTGGGTAGTTTGGCA
1 AA-TGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * *
76750781 TGGCA-TCCCATTTCATTCCAATTTGAATGCTTATAGA
65 TGACAGT-CCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * *
76750818 AATATTCTCTTAATTTTACATTCAATC-AATTTTGGCAGGGCAATTTGGTTAGGTAATTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* *
76750882 GACAGTCCATTTCGCCCCAATTTGAATACTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
** * * * * * *
76750918 AATGTTTTGTTAAATTTGAATTCAATCCAATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGC-TGGGTAGTTTGGCA
* * *
76750983 TGATAGTCCATCTT-TTCCAAATTTGAATGCTTATAGA
65 TGACAGTCCAT-TTCGTCCCAATTTGAATGCTTATAGA
* * ** * * * * *
76751020 AATTTCCTCTTAATTATG-ATTTCAATCAAATTTTGAAAGAGAAGGTTGACTGGGTAGTTTGGCT
1 AATGTCCTCTTAATTTTGCA-TTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCA
76751084 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * *
76751121 AATGTCCTCTTAATTTTGCATTCAATCCAATTTTGGCAAGGCAATCTGGCTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76751186 GACAGTACATTTCATCCCAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * *
76751222 AATGTCCTCTTAATTTTGCATTTAATCAAATATTGGTAGGACAGATTGGCTGGGTAGTTTGACAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76751287 GACAATCCATTTCGTCCCAATTTAAATACATATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * *
76751323 AA--T-ATCTTAATTTTGCATTCCATC-AATTTTGGTAGGGCAGTTTCGCTGGGTAGATTGACAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76751384 GACAGTCCATTTCGTCCTAATTTTAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * *
76751420 AATGTCCTCTTAATTTTGCATTCAATCAAATTTAGGCAGGGTAGTTTTGCTAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76751485 GATAGTCAATTTTGTCCCAATTTTAATGCTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * * *
76751521 AATGTCTTCTTAATTTTACATTCAATCTAATTTTGGTAGGCCAGTTTGGCCGGATAGTTTGCCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76751586 TACAGTACATTTCATCCCGATTTGAATGCTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * ** *** *
76751622 AATGTTCTCTTAATTTTACATTTAATCAAATTTTAACAACACAGTTTGGCTGGGTAGTTCGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76751687 GACAGTCCATTTCGTCCAAATTTGAGTGCCTATTGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* *
76751723 AATGTCCTCTTAATTTTGCATTCAATCAAA-TTT------G-A---T--AT-GGAAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76751774 GACAGTTCATTTCTTCCTAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * *** * *
76751810 AATATTCTCTTAATTTTACATTCAATCAAATTTCGGCACAACAGTTTGGTTGGATAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76751875 GACAGTCTATTTTGTCCCAATTTGAATGCTGATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * ** **
76751911 AATATTCTCTTAATGTTGCATTCAGTCAAATATTGGCAGGGTTGTTTGGCCAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76751976 GATAGTCCATTTCATCCCAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * *
76752012 AATGTCCTCTTAATTTTGCATTCAATCAAATATTT-GTAGGCCAGTTTGGCTAGGTAGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAAT-TTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * * *
76752076 TGATAGTCTATTTCATCCCAATTTTGACA--CTTACAAA
65 TGACAGTCCATTTCGTCCCAA-TTTGA-ATGCTTATAGA
* * * *
76752113 AATTTCCTTTTAATTTTGCATACAATCAAA---T----------TTTGGCTAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76752165 GACATTCCATTTCATCCCAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * *
76752201 AATGTTCTCTTAATTTTGCATTCAATTAAATTTTGGCAGGGCAATTTGGCTTGATAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* *
76752266 G-CAGTCCATTTTGTCCC-ATTTGAATGCTTATATA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * **
76752300 AATATCCTTTTAATTTTGCATTCAATCAAATATTGGTAGGGCTGTTTGGCTAAGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * ** *
76752365 AATAGTCCATTTCATCTTAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
** * * * * * * * * *
76752401 AATGAACTTTTAATATTGTATTCAATCAAATATTGGCACGACAGTTAGGCTGGGTAGTTTGACTT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
*
76752466 GATAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * *
76752502 AATGTTCTCTTAATTTTGCATTCAATC-GATTTT-----GGCA-----GCT---AAGTCTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76752553 GACAGTCCATTTCTTCCCAATTT-AAAGTTTATCGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * *
76752588 AATGTCCTATTAATTTTGCATTCAATCAAATTTTGGCTGGGAAATTTGGCTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* *
76752653 GACAGTCCATTTCATCCAAATTTGAACT-CTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGA
* * * * * * * * *
76752689 AATGTCATCTTAATTTTTCATTTAATAAAATTTTGGCAAGG-ATATTTTGTTAGGTAGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCA-GTTTGGCTGGGTAGTTTGGCA
* *
76752753 TAACAGTCCATTTTGTCCCAATTTGAATGCTTATAGA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * ** * * * *
76752790 TATGTCATCTTAATTTTGCATTCAATC-AATTTTTCCTGGGAAGTTTTGCTGGGTAGTTTTGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * *
76752854 GACAGTCAATTTCATCCCAATTTGAATGTTTATCGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
** * * * * * *
76752890 AATACCCTCTTAATTTTGCATTTAATCAAATCTTGGCAGGGAAATTTGGCTGGGTATTTTAGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * *
76752955 GACTGTCCATTTCATCCCAGTTTAAACT-TTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGA
*
76752991 AATGTCAC-CTTAATTTTGCATTCAATCAAA-TTT----------TTT-GCGGGGTTA-TTTGGC
1 AATGTC-CTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGG-TAGTTTGGC
** *
76753042 ATGGTA-TCCCATTTCATCCCAATTTGAATGCTTATAGA
64 ATGACAGT-CCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * * *
76753080 CATGTCTTATTAATTTTGCATTTAATC-AATATTGGCAGGGAAGTGTT-TCTAGGTAGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGT-TTGGCTGGGTAGTTTGGCA
* *
76753143 TGACAGTCCGTTTAGTCCCAATTTGAATGCTTATAGA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * *
76753180 ATTGTCCTCTGAATTTTGTATT-AATC-AATTTT-GCAGGGTAGTTTGGCTGGGTAGGCTT-GCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTA-GTTTGGCA
*
76753241 TGACAGTCCATTTCGTACCAATTTGAATGCTTATAGA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * *
76753278 AATGTCCTCTTAATTTTGCATTCAATC-AATTGTAGCATGACAGTTTGGCTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** *
76753342 GATTGTCCATTTCGTCCCATTTTGAATGCTTATAG-
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * **
76753377 AATGTCCTTTTAATTTTGCATTCAATC-AATTTTGGCAGAGTAGTTTGGTTGGATAGTTTTCCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * *
76753441 GACAGTCCACGTCGT-CTAAGTTAGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAA-TTTGAATGCTTATAGA
* * * * * *
76753477 AATATCATCTTAATTTTGAATTCAATCAAATTTTGGCCGGGCGGTTTGGCTGAGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * *
76753542 GACAATCCGTTTCGTCCCAACTTGAATGTTTATAGT
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * *
76753578 AATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGCAAGGAAG-TT---T-GGTA---T-G-AT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
*
76753633 ---AGTCCATTTCGTCCCAATTTGAATGCTTTTAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * *
76753666 AATATCCTCTTAAATTTACACTCAATCAAATTTTGGCAGGACAATTTGGCT-GGTAGTTTTGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * * *
76753730 GACAGTTTATTTCATCCCAATTTTAATTCTTTTA-A
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
** * * * * *
76753765 TAATGTCCTCTTAATTTTGCATTCAATC-AATTTCAGTAGAGCAGTTTTGCCGAGTAGTTTGGCA
1 -AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * *
76753829 TGACAGTCCATTTCGTACCGATTTAAATGTTTATAGA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * *
76753866 AATGTCTTCTTAATTTGGAATTCAATAAAATTTTGG-A----AG---AGC-----AGTTTGGCTT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76753918 GACAATCAATTTTGTCCCAATTTGAATGCTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * * * ** *
76753954 GATGTCTTCTTAATTTTGAATTCAACCAAATATTGGCAAGGTAGTTTGGCTCCGTAATTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
*
76754019 GACAGTCCATTTCGTCCCAATTTGAATGTTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * *
76754055 AATGTCCTTTTAATTATGCATTTAATCAAATATTGGCAGGGTA-ATT---T-GGTA---T-G-AT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
*
76754110 ---AGTCCATTTCGTCCTAATTTGAATGCTTATAGA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
* * * * * *
76754143 AATGTTCTCTTAATTTTGCATTCAAT-TAGTCTTGGCAGGG-AGGTTTGGTTGGGTAGTTTGACA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCA-GTTTGGCTGGGTAGTTTGGCA
* * * ***
76754206 TGACAGTCCATTTCATTCTAATTTGAAAATTTATCA-A
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTAT-AGA
* * *
76754243 AATGTCCTTTTAATTTTGAATTTAATCAAATTTTG
1 AATGTCCTCTTAATTTTGCATTCAATCAAATTTTG
76754278 ACTAGGTAGT
Statistics
Matches: 3925, Mismatches: 766, Indels: 424
0.77 0.15 0.08
Matches are distributed among these distances:
83 1 0.00
86 83 0.02
87 271 0.07
88 415 0.11
89 68 0.02
90 9 0.00
91 7 0.00
92 14 0.00
93 7 0.00
95 8 0.00
96 28 0.01
97 76 0.02
98 94 0.02
99 203 0.05
100 658 0.17
101 1884 0.48
102 96 0.02
103 3 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (101 bp):
AATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCAT
GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
Found at i:76749952 original size:86 final size:88
Alignment explanation
Indices: 76749807--76749999 Score: 266
Period size: 86 Copynumber: 2.2 Consensus size: 88
76749797 GGCAAGGCAG
* * * *
76749807 TTTGGCTGGGTAGTTTGGCTTGACAGTCCATTTCGTCCCAATTTGAATGTTTAAAGAAATGTCCT
1 TTTGGCAGGGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAAGTTTAAAGAAATGT-CT
76749872 T-TT-ATTTTGCATTCAATC-AAT
65 TCTTAATTTTGCATTCAATCAAAT
* * * **
76749893 TTTGGTAGGGAAGTTTGGCATGACAGTCTATTTTGTCCCAATTTGAAAGTTTATTGAAATGTCTT
1 TTTGGCAGGGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAAGTTTAAAGAAATGTCTT
76749958 CTTAATTTTGCATTCAATCAAAT
66 CTTAATTTTGCATTCAATCAAAT
*
76749981 TTTGGCAGGGCAGTTTGGC
1 TTTGGCAGGGAAGTTTGGC
76750000 TGGATAGTTT
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
85 3 0.03
86 55 0.59
87 15 0.16
88 20 0.22
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.41
Consensus pattern (88 bp):
TTTGGCAGGGAAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAAGTTTAAAGAAATGTCTT
CTTAATTTTGCATTCAATCAAAT
Found at i:76750028 original size:389 final size:390
Alignment explanation
Indices: 76749277--76754190 Score: 3597
Period size: 389 Copynumber: 12.6 Consensus size: 390
76749267 TATTTGTATG
* * * * **
76749277 AATGTCCTCTTAATTTTG-----AATCAAATTTTGAAAGAGTAGTTTGATTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * * * *
76749337 GGCAAATCCATTTCGT-CCAATTTGAAAGCTTACA-AAGATGTCCTCTTAATTCTGTATTAAATC
66 GAC-AGTCCATTTCGTCCCAATTTGAATGCTTATAGAA-ATGTCCTCTTAATTTTGCATTCAATC
* * * * * * * * * *
76749400 AAATTTTGGCAGGGTAGTTTGGCTGTGTAGTTCGACATTATAGTCCATTTCATCCAAATTTGAGT
129 AAATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
*** * * * * *
76749465 GCCCATTGAAATGTCCTCTTAATTTTTCATTCAATCAAAATTTGGCAGGGCAGTTTGGCTTGACA
194 GTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAGTTTGGCATGACA
* *
76749530 GTCCATTTT-TTCCAATTTGAATGTTTATAGAAATAT-TCTCTTAATTTTGCATTCAATCAAATT
259 GTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCT-TCTTAATTTTGCATTCAATCAAATT
* * * **
76749593 TTAGCAGGGCAGTTTGGCTGGATAGTTTAGCATGACAGTCCATTTTGTCCCAATTTGAATATTTA
323 TTGGCAGGGCAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTA
*
76749658 TAAA
387 TAGA
* * *
76749662 AATATCCTCTTAATTTTGCATTTAATCAAATATTGGAAGGGCTGTTTGGCTGGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * * * * *
76749727 GGTAGTCTATTCCATCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATATTGCATTCAATCAA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* *
76749792 ATATTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCTTGACAGTCCATTTCGTCCCAATTTGAATGT
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
* * *
76749857 TTAAAGAAATGTCCT-TTTATTTTGCATTCAATC-AATTTTGGTAGGGAAGTTTGGCATGACAGT
196 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAGTTTGGCATGACAGT
* * *
76749920 CTATTTTGTCCCAATTTGAAAGTTTATTGAAATGTCTTCTTAATTTTGCATTCAATCAAATTTTG
261 CCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCTTCTTAATTTTGCATTCAATCAAATTTTG
* * * *
76749985 GCAGGGCAGTTTGGCTGGATAGTTTGCCATGACAGTTCATTTTGTCCCAATTTGAATGCTTATAA
326 GCAGGGCAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAG
76750050 A
390 A
* * * *
76750051 AATATCCTCTTAATTTTGCATTTAATCAAATATTGGAAGGGCTGTTTGGCTAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
** * * * * * * *
76750116 GGTAGTCTATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATATTACATTCTATCAA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * * *
76750181 ATATTGGCAAGGCAGTTTGGTTGGGTAGTTTGGCTTGATAGTCCATTTCGTCCCAATTTGAATGC
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
* ** *
76750246 TTATTGAAATGTTTTCTTAATTTTGCATTCAATC-AATTTTGGCAGGAAAGTTTGGCATGACAGT
196 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAGTTTGGCATGACAGT
* *
76750310 CCATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTTTGCATTCAATCAAATTTT
261 CCATTTTGTCCCAATTTGAATGTTTA-TAGAAATGTCTTCTTAATTTTGCATTCAATCAAATTTT
* * *
76750374 ------G--G-TT-G--GGTAGTTTGGCATGACCGTCCATTTCTTCCAAATTTGAAAT-CTTATA
325 GGCAGGGCAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTG-AATGCTTATA
76750426 GA
389 GA
** * * * *
76750428 AATGTTATCTTAATTTTGCAGTCAGTCAAATTTTGGCAA----A-----AC-----AGTTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGG-AAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * *
76750479 TGATAGTCCATTTTGTCCCAATTTGAATACTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * **
76750543 AATTTTGGC-AGGTAAGTTTTGCTGGGTAGTTTGGCATGACAGTTTATTTCGTCCCAATTTGAAT
130 AATTTTGGCAAGG-CAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
* * * * *
76750607 GTTTATCGAAATATCCTCTTAATTTTGCATTTAATCAAATTTTGGCAAGGAAATTTGGC-TAGAC
194 GTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAGTTTGGCAT-GAC
* * * *
76750671 ATTTTGGAATGACTATCCATTTTATCCCAATTTAAACT-CTTATA-AAACTGTCCTCTTAATTTT
258 --------A-G----TCCATTTTGTCCCAATTTGAA-TGTTTATAGAAA-TGTCTTCTTAATTTT
* ** * * * *
76750734 GCATTCAATCAATTTTTGGTTGGGTAGTTTGGCTGGGTAGTTTGGCATGGCA-TCCCATTTCATT
308 GCATTCAATCAAATTTTGGCAGGGCAGTTTGGCT-GGTAGTTTGGCATGACAGT-CCATTTCGTC
76750798 CCAATTTGAATGCTTATAGA
371 CCAATTTGAATGCTTATAGA
* * * * * * * * *
76750818 AATATTCTCTTAATTTTACATTCAATC-AATTTTGGCAGGGCAATTTGGTTAGGTAATTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * ** * * * *
76750882 GACAGTCCATTTCGCCCCAATTTGAATACTTATAGAAATGTTTTGTTAAATTTGAATTCAATCCA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * * * *
76750947 ATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGCATGATAGTCCATCTT-TTCCAAATTTGAAT
131 ATTTTGGCAAGGCAGTTTGGC-TGGGTAGTTTGGCATGACAGTCCAT-TTCGTCCCAATTTGAAT
* * * *
76751011 GCTTATAGAAATTTCCTCTTAATTATG-ATTTCAATCAAATTTTGAAAGAGAAGGTTGACTGGGT
194 GTTTATAGAAATGTCCTCTTAATTTTGCA-TTCAATCAAATTTT----G-GCAGG--GA------
* * * *
76751075 AGTTTGGCTTGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGC
245 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCTTCTTAATTTTGC
* * * * * *
76751140 ATTCAATCCAATTTTGGCAAGGCAATCTGGCTGGGTAGTTTGGCATGACAGTACATTTCATCCCA
310 ATTCAATCAAATTTTGGCAGGGCAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCA
*
76751205 ATTTGAATGTTTATAGA
374 ATTTGAATGCTTATAGA
* * * * *
76751222 AATGTCCTCTTAATTTTGCATTTAATCAAATATTGGTAGGACAGATTGGCTGGGTAGTTTGACAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * * *
76751287 GACAATCCATTTCGTCCCAATTTAAATACATATAGAAA--T-ATCTTAATTTTGCATTCCATC-A
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * * * * *
76751348 ATTTTGGTAGGGCAGTTTCGCTGGGTAGATTGACATGACAGTCCATTTCGTCCTAATTTTAATGT
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
*
76751413 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTAGGCAGGGTAGTTTTGCTAGGTAGT
196 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCA--G--G----G--A---AGT
* * * * *
76751478 TTGGCATGATAGTCAATTTTGTCCCAATTTTAATGCTTATAGAAATGTCTTCTTAATTTTACATT
248 TTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCTTCTTAATTTTGCATT
* * * * * * * * *
76751543 CAATCTAATTTTGGTAGGCCAGTTTGGCCGGATAGTTTGCCATTACAGTACATTTCATCCCGATT
313 CAATCAAATTTTGGCAGGGCAGTTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCGTCCCAATT
76751608 TGAATGCTTATAGA
377 TGAATGCTTATAGA
* * * ** *** *
76751622 AATGTTCTCTTAATTTTACATTTAATCAAAT-TTTAACAACACAGTTTGGCTGGGTAGTTCGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGA-AGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * *
76751686 TGACAGTCCATTTCGTCCAAATTTGAGTGCCTATTGAAATGTCCTCTTAATTTTGCATTCAATCA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * *
76751751 AA-TTT------G-A---T--AT-GGAAGTTTGGCATGACAGTTCATTTCTTCCTAATTTGAATG
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
* * * *
76751802 TTTATAGAAATATTCTCTTAATTTTACATTCAATCAAATTTCGGCACAACAGTTTGGTTGGATAG
195 TTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGG-----CA-----G--GGA-AG
* * * * *
76751867 TTTGGCATGACAGTCTATTTTGTCCCAATTTGAATGCTGATAGAAATAT-TCTCTTAATGTTGCA
247 TTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCT-TCTTAATTTTGCA
* * ** * * *
76751931 TTCAGTCAAATATTGGCAGGGTTGTTTGGCCAGGTAGTTTGGCATGATAGTCCATTTCATCCCAA
311 TTCAATCAAATTTTGGCAGGGCAGTTTGG-CTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAA
*
76751996 TTTGAATGTTTATAGA
375 TTTGAATGCTTATAGA
* * * *
76752012 AATGTCCTCTTAATTTTGCATTCAATCAAATATTTGTAGGCCAGTTTGGCTAGGTAGTTTGGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * * * *
76752077 GATAGTCTATTTCATCCCAATTTTGACA--CTTACAAAAATTTCCTTTTAATTTTGCA-T--A-C
66 GACAGTCCATTTCGTCCCAA-TTTGA-ATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC
* * * *
76752136 -AA---T--CAA---ATTTTGGCTAGGTAGTTTGGCATGACATTCCATTTCATCCCAATTTGAAT
129 AAATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
* *
76752192 GTTTATAGAAATGTTCTCTTAATTTTGCATTCAATTAAATTTTGGCAGGGCAA-TTTGGCTTGAT
194 GTTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGG-AAGTTTGGC-----
* * *
76752256 AGTTTGGCATGCAGTCCATTTTGTCCC-ATTTGAATGCTTATATAAATATCCTT-TTAATTTTGC
253 A---T-G-A--CAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGT-CTTCTTAATTTTGC
* * * * * * * **
76752319 ATTCAATCAAATATTGGTAGGGCTGTTTGGCTAAGTAGTTTGGCATAATAGTCCATTTCATCTTA
310 ATTCAATCAAATTTTGGCAGGGCAGTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCA
*
76752384 ATTTGAATGTTTATAGA
374 ATTTGAATGCTTATAGA
** * * * * * * * * *
76752401 AATGAACTTTTAATATTGTATTCAATCAAATATTGGCACGACAGTTAGGCTGGGTAGTTTGACTT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * *
76752466 GATAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATC-G
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * *
76752530 ATTTT-----GGCA-----GCT---AAGTCTGGCATGACAGTCCATTTCTTCCCAATTT-AAAGT
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
* * *
76752581 TTATCGAAATGTCCTATTAATTTTGCATTCAATCAAATTTTGGCTGGGAAATTTGGCTGGGTAGT
196 TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC------A-------GGGAAGT
** * * * *
76752646 TTGGCATGACAGTCCATTTCATCCAAATTTGAACT-CTTATAGAAATGTCATCTTAATTTTTCAT
248 TTGGCATGACAGTCCATTTTGTCCCAATTTGAA-TGTTTATAGAAATGTCTTCTTAATTTTGCAT
* * * * * * * *
76752710 TTAATAAAATTTTGGCAAGG-ATATTTTGTTAGGTAGTTTGGCATAACAGTCCATTTTGTCCCAA
312 TCAATCAAATTTTGGCAGGGCA-GTTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAA
76752774 TTTGAATGCTTATAGA
375 TTTGAATGCTTATAGA
* * * **** * * *
76752790 TATGTCATCTTAATTTTGCATTCAATC-AATTTTTCCTGGGAAGTTTTGCTGGGTAGTTTTGCAT
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
* * * * ** *
76752854 GACAGTCAATTTCATCCCAATTTGAATGTTTATCGAAATACCCTCTTAATTTTGCATTTAATCAA
66 GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
* * * * * * * * * *
76752919 ATCTTGGCAGGGAAATTTGGCTGGGTATTTTAGCATGACTGTCCATTTCATCCCAGTTTAAACT-
131 ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TG
* * * *
76752983 TTTATAGAAATGTCAC-CTTAATTTTGCATTCAATCAAATTTTTTGCGGGGTTA-TTTGGCATGG
195 TTTATAGAAATGTC-CTCTTAATTTTGCATTCAATCAAA-TTTTGGCAGGG-AAGTTTGGCATGA
* ** * * * *
76753046 TA-TCCCATTTCATCCCAATTTGAATGCTTATAGACATGTCTTATTAATTTTGCATTTAATC-AA
257 CAGT-CCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCTTCTTAATTTTGCATTCAATCAAA
* * * * *
76753109 TATTGGCAGGGAAGTGTT-TCTAGGTAGTTTGGCATGACAGTCCGTTTAGTCCCAATTTGAATGC
321 TTTTGGCAGGGCAGT-TTGGCT-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGC
76753173 TTATAGA
384 TTATAGA
* * * * * * *
76753180 ATTGTCCTCTGAATTTTGTATT-AATC-AAT-TTTGCAGGGTAGTTTGGCTGGGTAGGCTT-GCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTA-GTTTGGCA
*
76753241 TGACAGTCCATTTCGTACCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * ** *
76753305 AATTGTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATTGTCCATTTCGTCCCATTTTGAATG
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
* *
76753370 CTTATAG-AATGTCCTTTTAATTTTGCATTCAATC-AATTTTGGCAGAGTAGTTTGGTTGGATAG
195 TTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGC-----A-----G--GGA-AG
** ** * * * * * *
76753433 TTTTCCATGACAGTCCACGTCGT-CTAAGTTAGAATGTTTATAGAAATATCATCTTAATTTTGAA
247 TTTGGCATGACAGTCCATTTTGTCCCAA-TTTGAATGTTTATAGAAATGTCTTCTTAATTTTGCA
* * * *
76753497 TTCAATCAAATTTTGGCCGGGCGGTTTGGCTGAGTAGTTTGGCATGACAATCCGTTTCGTCCCAA
311 TTCAATCAAATTTTGGCAGGGCAGTTTGGCTG-GTAGTTTGGCATGACAGTCCATTTCGTCCCAA
* * *
76753562 CTTGAATGTTTATAGT
375 TTTGAATGCTTATAGA
* * *
76753578 AATGTTCTCTTAATTTTGCATTCAATCAAATTTTGGCAA-GGAAG-TT---T-GGTA---T-G-A
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGG-AAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * * *
76753632 T---AGTCCATTTCGTCCCAATTTGAATGCTTTTAGAAATATCCTCTTAAATTTACACTCAATCA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * ** * *
76753694 AATTTTGGC-AGGACAATTTGGCT-GGTAGTTTTGCATGACAGTTTATTTCATCCCAATTTTAAT
130 AATTTTGGCAAGG-CAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAAT
*
76753757 -TCTTTTA-ATAATGTCCTCTTAATTTTGCATTCAATC-AATTTCAGTAGAGCAGTTTTGCCGAG
194 GT-TTATAGA-AATGTCCTCTTAATTTTGCATTCAATCAAATTT---T-G-GCAG----G--GA-
* * * * *
76753819 TAGTTTGGCATGACAGTCCATTTCGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATTTGG
245 -AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCTTCTTAATTTTG
* * * * * * *
76753884 AATTCAATAAAATTTTGG-A----AG---AGC----AGTTTGGCTTGACAATCAATTTTGTCCCA
309 CATTCAATCAAATTTTGGCAGGGCAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCA
76753937 ATTTGAATGCTTATAGA
374 ATTTGAATGCTTATAGA
* * * * * ** *
76753954 GATGTCTTCTTAATTTTGAATTCAACCAAATATTGGCAA-GGTAGTTTGGCTCCGTAATTTGGCA
1 AATGTCCTCTTAATTTTGCATTCAATCAAATATTGG-AAGGGCAGTTTGGCTGGGTAGTTTGGCA
* * * *
76754018 TGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATTATGCATTTAATCA
65 TGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCA
* * * * *
76754083 AA---T--------A--TTGGCAGGGTAATTTGGTATGATAGTCCATTTCGTCCTAATTTGAATG
130 AATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATG
* * * * * *
76754135 CTTATAGAAATGTTCTCTTAATTTTGCATTCAAT-TAGTCTTGGCAGGGAGGTTTGG
195 TTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAGTTTGG
76754191 TTGGGTAGTT
Statistics
Matches: 3698, Mismatches: 582, Indels: 519
0.77 0.12 0.11
Matches are distributed among these distances:
362 3 0.00
363 83 0.02
364 93 0.03
366 2 0.00
368 1 0.00
369 1 0.00
372 5 0.00
373 2 0.00
374 1 0.00
376 86 0.02
377 183 0.05
378 15 0.00
379 3 0.00
380 3 0.00
381 8 0.00
382 1 0.00
383 3 0.00
384 10 0.00
385 25 0.01
386 37 0.01
387 104 0.03
388 337 0.09
389 836 0.23
390 689 0.19
391 163 0.04
392 9 0.00
393 5 0.00
394 7 0.00
395 5 0.00
396 14 0.00
397 55 0.01
398 81 0.02
399 15 0.00
400 296 0.08
401 31 0.01
402 109 0.03
403 77 0.02
404 213 0.06
405 68 0.02
408 2 0.00
409 4 0.00
411 2 0.00
417 10 0.00
418 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (390 bp):
AATGTCCTCTTAATTTTGCATTCAATCAAATATTGGAAGGGCAGTTTGGCTGGGTAGTTTGGCAT
GACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
ATTTTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGT
TTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAGTTTGGCATGACAGT
CCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCTTCTTAATTTTGCATTCAATCAAATTTTG
GCAGGGCAGTTTGGCTGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
Found at i:76750343 original size:87 final size:87
Alignment explanation
Indices: 76750207--76750561 Score: 423
Period size: 88 Copynumber: 4.1 Consensus size: 87
76750197 TTGGTTGGGT
* * * * * **
76750207 AGTTTGGCTTGATAGTCCATTTCGTCCCAATTTGAATGCTTATTGAAATGTTTTCTTAATTTTGC
1 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAA-ACTTATAGAAATGTCCTCTTAATTTTGC
76750272 ATTCAATC-AATTTTGGCAGGAA
65 ATTCAATCAAATTTTGGCAGGAA
*
76750294 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTTTG
1 AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAAA-CTTA-TAGAAATGTCCTCTTAATTTTG
** **
76750358 CATTCAATCAAATTTTGGTTGGGT
64 CATTCAATCAAATTTTGGCAGGAA
* * **
76750382 AGTTTGGCATGACCGTCCATTTCT-TCCAAATTTGAAATCTTATAGAAATGTTATCTTAATTTTG
1 AGTTTGGCATGACAGTCCATTT-TGTCCCAATTTGAAA-CTTATAGAAATGTCCTCTTAATTTTG
* * *
76750446 CAGTCAGTCAAATTTTGGCA-AAA
64 CATTCAATCAAATTTTGGCAGGAA
*
76750469 CAGTTTGGCATGATAGTCCATTTTGTCCCAATTTGAATACTTATAGAAATGTCCTCTTAATTTTG
1 -AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAA-ACTTATAGAAATGTCCTCTTAATTTTG
*
76750534 CATTCAATC-AATTTTGGCAGGTA
64 CATTCAATCAAATTTTGGCAGGAA
76750557 AGTTT
1 AGTTT
76750562 TGCTGGGTAG
Statistics
Matches: 225, Mismatches: 34, Indels: 18
0.81 0.12 0.06
Matches are distributed among these distances:
87 80 0.36
88 143 0.64
89 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.41
Consensus pattern (87 bp):
AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAAACTTATAGAAATGTCCTCTTAATTTTGCA
TTCAATCAAATTTTGGCAGGAA
Found at i:76750389 original size:289 final size:290
Alignment explanation
Indices: 76750003--76754292 Score: 2526
Period size: 289 Copynumber: 14.7 Consensus size: 290
76749993 GTTTGGCTGG
* * * * *
76750003 ATAGTTTGCCATGACAGTTCATTTTGTCCCAATTTGAATGCTTATAAAAATATCCTCTTAATTTT
1 ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* * * * ** *
76750068 GCATTTAATCAAATATTGGAAGGGCTGTTTGGCTAGGTAGTTTGGCATGGTAGTCTATTTTGTCC
66 GCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTGTCC
* * * * *
76750133 CAATTTGAATGTTTATAGAAATGTCCTTTTAATATTACATTCTATCAAATATTGGCAAGGCAGTT
131 CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-ATCAAATTTTGGCAAGGCAGTT
* * * * **
76750198 TGGTTGGGTAGTTTGGCTTGATAGTCCATTTCGTCCCAATTTGAATGCTTATTGAAATGTTTTCT
195 TGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCT
76750263 TAATTTTGCATTCAATCAATTTTGGCAGG-A
260 TAATTTTGCATTCAATCAATTTTGGCAGGCA
*
76750293 A-AGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAAAGTTTATTA-AAATGTCCTCTTAATTT
1 ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTA-TAGAAATGTCCTCTTAATTT
*
76750356 TGCATTCAATCAAA-TTT--T---G--G-TT-G---GGTAGTTTGGCATGACCGTCCATTTCT-T
65 TGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTT-TGT
* ** *
76750407 CCAAATTTGAAAT-CTTATAGAAATGTTATCTTAATTTTGCAGTCAGTCAAATTTTGGCAA---A
129 CCCAATTTG-AATGCTTATAGAAATGTCCTCTTAATTTTGCATTCA-TCAAATTTTGGCAAGGCA
* * * *
76750468 -----AC-----AGTTTGGCATGATAGTCCATTTTGTCCCAATTTGAATACTTATAGAAATGTCC
192 GTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
*
76750523 TCTTAATTTTGCATTCAATCAATTTTGGCAGGTA
257 TCTTAATTTTGCATTCAATCAATTTTGGCAGGCA
** * * *
76750557 AGTTTTGCTGGGTAGTTTGGCATGACAGTTTATTTCGTCCCAATTTGAATGTTTATCGAAATATC
1 A-----------TAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTC
* * * * * ** * *
76750622 CTCTTAATTTTGCATTTAATCAAATTTTGGCAAGGAAATTTGGCTAGACATTTTGGAATGACTA-
55 CTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGAC-AG
* * *
76750686 TCCATTTTATCCCAATTTAAACT-CTTATA-AAACTGTCCTCTTAATTTTGCATTCAATCAATTT
119 TCCATTTTGTCCCAATTTGAA-TGCTTATAGAAA-TGTCCTCTTAATTTTGCATTC-ATCAAATT
*** * * * *
76750749 TTGGTTGGGTAGTTTGGCTGGGTAGTTTGGCATGGCA-TCCCATTTCATTCCAATTTGAATGCTT
181 TTGGCAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGT-CCATTTCGTCCCAATTTGAATGCTT
* * *
76750813 ATAGAAATATTCTCTTAATTTTACATTCAATCAATTTTGGCAGGGCA
245 ATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCA-GGCA
* * ** **
76750860 ATTTGGTTAGGTAATTTGGCATGACAGTCCATTTCGCCCCAATTTGAATACTTATAGAAATGTTT
1 A------TA-G---TTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCC
* * * * * * *
76750925 TGTTAAATTTGAATTCAATCCAATTTTGGTAGGGTAGTTTGGCTTGGGTAGTTTGGCATGATAGT
56 TCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGC-TAGGTAGTTTGGCATGACAGT
* * *
76750990 CCATCTTT-TCCAAATTTGAATGCTTATAGAAATTTCCTCTTAATTATG-ATTTCAATCAAATTT
120 CCAT-TTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCA-TTC-ATCAAATTT
* * * * *
76751053 T-GAAAGAGAAGGTTGACTGGGTAGTTTGGCTTGACAGTCCATTTCGTCCCAATTTGAATGCTTA
182 TGGCAAG-GCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTA
76751117 TAGAAATGTCCTCTTAATTTTGCATTCAATCCAATTTTGGCAAGGCA
246 TAGAAATGTCCTCTTAATTTTGCATTCAAT-CAATTTTGGC-AGGCA
* **
76751164 ATCTGGCTGGGTAGTTTGGCATGACAGTACATTTCATCCCAATTTGAATGTTTATAGAAATGTCC
1 A----------TAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCC
* * * * * * *
76751229 TCTTAATTTTGCATTTAATCAAATATTGGTAGGACAGATTGGCTGGGTAGTTTGACATGACAATC
56 TCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTC
* * * * *
76751294 CATTTCGTCCCAATTTAAATACATATAGAAA--T-ATCTTAATTTTGCATTCCATC-AATTTTGG
121 CATTTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATT-CATCAAATTTTGG
* * * * * * * *
76751355 TAGGGCAGTTTCGCTGGGTAGATTGACATGACAGTCCATTTCGTCCTAATTTTAATGTTTATAGA
185 CAAGGCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA
*
76751420 AATGTCCTCTTAATTTTGCATTCAATCAAATTTAGGCAGGGTAGTTTTGCTA
250 AATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGC-----AG----GC-A
* * * * * *
76751472 GGTAGTTTGGCATGATAGTCAATTTTGTCCCAATTTTAATGCTTATAGAAATGTCTTCTTAATTT
1 -ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTT
* * * * * * * **
76751537 TACATTCAATCTAATTTTGGTAGGCCAGTTTGGC-CGGATAGTTTGCCATTACAGTACATTTCAT
65 TGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGG-TAGTTTGGCATGACAGTCCATTTTGT
* * * * ** **
76751601 CCCGATTTGAATGCTTATAGAAATGTTCTCTTAATTTTACATTTAATCAAATTTTAACAACACAG
129 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCA-TTCATCAAATTTTGGCAAGGCAG
* * * * *
76751666 TTTGGCTGGGTAGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAGTGCCTATTGAAATGTCCT
193 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* **
76751731 CTTAATTTTGCATTCAATCAAATTTGATATGG--
258 CTTAATTTTGCATTCAATCAATTTTGGCA-GGCA
* * * *
76751763 A-AGTTTGGCATGACAGTTCATTTCT-TCCTAATTTGAATGTTTATAGAAATATTCTCTTAATTT
1 ATAGTTTGGCATGACAGTCCATTT-TGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTT
* * * *** * *
76751826 TACATTCAATCAAATTTCGGCACAACAGTTTGG-TTGGATAGTTTGGCATGACAGTCTATTTTGT
65 TGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGG-TAGTTTGGCATGACAGTCCATTTTGT
* * * * * * **
76751890 CCCAATTTGAATGCTGATAGAAATATTCTCTTAATGTTGCATTCAGTCAAATATTGGCAGGGTTG
129 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCA-TCAAATTTTGGCAAGGCAG
** * * *
76751955 TTTGGCCAGGTAGTTTGGCATGATAGTCCATTTCATCCCAATTTGAATGTTTATAGAAATGTCCT
193 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
76752020 CTTAATTTTGCATTCAATCAAATATTTGTAGGCCAGTTTGGCTA
258 CTTAATTTTGCATTCAATC--A-ATTT-T-GG-CA----GGC-A
* * * ** * * * * *
76752064 GGTAGTTTGGCATGATAGTCTATTTCATCCCAATTTTGACA--CTTACAAAAATTTCCTTTTAAT
1 -ATAGTTTGGCATGACAGTCCATTTTGTCCCAA-TTTGA-ATGTTTATAGAAATGTCCTCTTAAT
* * **
76752127 TTTGCATACAATCAAA------T-------TTTGGCTAGGTAGTTTGGCATGACATTCCATTTCA
63 TTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTG
* * * *
76752179 TCCCAATTTGAATGTTTATAGAAATGTTCTCTTAATTTTGCATTCAATTAAATTTTGGCAGGGCA
128 TCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-ATCAAATTTTGGCAAGGCA
* * * * * *
76752244 ATTTGGCTTGATAGTTTGGCATG-CAGTCCATTTTGTCCC-ATTTGAATGCTTATATAAATATCC
192 GTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
* *
76752307 TTTTAATTTTGCATTCAATCAAATATTGGTAGGGCTGTTTGGCTA
257 TCTTAATTTTGCATTCAATC-AAT-TT--T--GGC----AGGC-A
* * ** ** ** * *
76752352 AGTAGTTTGGCATAATAGTCCATTTCATCTTAATTTGAATGTTTATAGAAATGAACTTTTAATAT
1 A-TAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTT
* * * * * * * * * * *
76752417 TGTATTCAATCAAATATTGGCACGACAGTTAGGCTGGGTAGTTTGACTTGATAGTCCATTTCGTC
65 TGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTGTC
* *
76752482 CCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATC-GATTTT-----GGCA--
130 CCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-ATCAAATTTTGGCAAGGCAGT
* * * * * * *
76752539 ---GCT---AAGTCTGGCATGACAGTCCATTTCTTCCCAATTT-AAAGTTTATCGAAATGTCCTA
194 TTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTC
*
76752597 TTAATTTTGCATTCAATCAAATTTTGGCTGGGAAATTTGGCTGG
259 TTAATTTTGCATTCAATC-AATTTTGGC------A---GGC--A
* ** * * *
76752641 GTAGTTTGGCATGACAGTCCATTTCATCCAAATTTGAACT-CTTATAGAAATGTCATCTTAATTT
1 ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAA-TGTTTATAGAAATGTCCTCTTAATTT
* * * * * * * * *
76752705 TTCATTTAATAAAATTTTGGCAAGG-ATATTTTGTTAGGTAGTTTGGCATAACAGTCCATTTTGT
65 TGCATTCAATCAAATTTTGGTAGGGCA-GTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTGT
* * ** ** *
76752769 CCCAATTTGAATGCTTATAGATATGTCATCTTAATTTTGCATTCAATC-AATTTTTCCTGGGAAG
129 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-ATCAAATTTTGGCAAGGCAG
* * * * * * **
76752833 TTTTGCTGGGTAGTTTTGCATGACAGTCAATTTCATCCCAATTTGAATGTTTATCGAAATACCCT
193 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * *
76752898 CTTAATTTTGCATTTAATCAAATCTTGGCAGGGAA
258 CTTAATTTTGCATTCAATC-AATTTTGGCA-GGCA
* * * ** * *
76752933 ATTTGGCTGGGTATTTTAGCATGACTGTCCATTTCATCCCAGTTTAAACT-TTTATAGAAATGTC
1 A----------TAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAA-TGTTTATAGAAATGTC
* * **
76752997 AC-CTTAATTTTGCATTCAATCAAATTTT--T--TGC-G---GG---GTTA-TTTGGCATGGTA-
55 -CTCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAG
** * * * * *
76753048 TCCCATTTCATCCCAATTTGAATGCTTATAGACATGTCTTATTAATTTTGCATTTAATC-AATAT
119 T-CCATTTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCA-TTCATCAAATTT
* * * * * *
76753112 TGGCAGGGAAGTGTT-TCTAGGTAGTTTGGCATGACAGTCCGTTTAGTCCCAATTTGAATGCTTA
182 TGGCAAGGCAGT-TTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTA
* * * *
76753176 TAGAATTGTCCTCTGAATTTTGTATT-AATCAATTTT-GCAGGGTA
246 TAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCA-GGCA
* * * * * *
76753220 GTTTGGCTGGGTAGGCTTGCATGACAGTCCATTTCGTACCAATTTGAATGCTTATAGAAATGTCC
1 --ATAG-T---T----TGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCC
* * * * * * **
76753285 TCTTAATTTTGCATTCAATC-AATTGTAGCATGACAGTTTGGCTGGGTAGTTTGGCATGATTGTC
56 TCTTAATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTC
* * *
76753349 CATTTCGTCCCATTTTGAATGCTTATAG-AATGTCCTTTTAATTTTGCATTCAATC-AATTTTGG
121 CATTTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-ATCAAATTTTGG
* * * ** ** * * *
76753412 C-AGAGTAGTTTGGTTGGATAGTTTTCCATGACAGTCCACGTCGT-CTAAGTTAGAATGTTTATA
185 CAAG-GCAGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAA-TTTGAATGCTTATA
* * * *
76753475 GAAATATCATCTTAATTTTGAATTCAATCAAATTTTGGCCGGGCGGTTTGGCTGA
248 GAAATGTCCTCTTAATTTTGCATTCAATC-AATTTT-----GGC----AGGC--A
* * * * * * *
76753530 GTAGTTTGGCATGACAATCCGTTTCGTCCCAACTTGAATGTTTATAGTAATGTTCTCTTAATTTT
1 ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* * * *
76753595 GCATTCAATCAAA-TTT--T--GGCA--------AGGAAGTTTGGTATGATAGTCCATTTCGTCC
66 GCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTGTCC
* * * * * *
76753647 CAATTTGAATGCTTTTAGAAATATCCTCTTAAATTTACACTCAATCAAATTTTGGC-AGGACAAT
131 CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-ATCAAATTTTGGCAAGG-CAGT
* ** * * * *
76753711 TTGGCT-GGTAGTTTTGCATGACAGTTTATTTCATCCCAATTTTAATTCTTTTA-ATAATGTCCT
194 TTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGA-AATGTCCT
76753774 CTTAATTTTGCATTCAATCAATTTCAGTAGAGCAGTTTTGCCGA
258 CTTAATTTTGCATTCAATCAATTT---T-G-GCAG----G-C-A
* * * * * * *
76753818 GTAGTTTGGCATGACAGTCCATTTCGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATTTG
1 ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* * * * * *
76753883 GAATTCAATAAAATTTTGG-A----A-----G--A-GCAGTTTGGCTTGACAATCAATTTTGTCC
66 GCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTGTCC
* * * * * *
76753935 CAATTTGAATGCTTATAGAGATGTCTTCTTAATTTTGAATTCAACCAAATATTGGCAAGGTAGTT
131 CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTC-ATCAAATTTTGGCAAGGCAGTT
** * * *
76754000 TGGCTCCGTAATTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTTT
195 TGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCT
* * *
76754065 TAATTATGCATTTAATCAAATATTGGCAGG--
260 TAATTTTGCATTCAATC-AATTTTGGCAGGCA
* * * * * * * *
76754095 GTAATTTGGTATGATAGTCCATTTCGTCCTAATTTGAATGCTTATAGAAATGTTCTCTTAATTTT
1 ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* * * * * * * ** *
76754160 GCATTCAAT-TAGTCTTGGCAGGG-AGGTTTGGTTGGGTAGTTTGACATGACAGTCCATTTCATT
66 GCATTCAATCAAATTTTGGTAGGGCA-GTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTGTC
* *** * * * * * *
76754223 CTAATTTGAAAATTTATCA-AAATGTCCTTTTAATTTTGAATTTAATCAAATTTTGACTAGGTAG
130 CCAATTTGAATGCTTAT-AGAAATGTCCTCTTAATTTTGCA-TTCATCAAATTTTGGCAAGGCAG
76754287 TTTGGC
193 TTTGGC
76754293 ATGATTGTAC
Statistics
Matches: 3147, Mismatches: 596, Indels: 515
0.74 0.14 0.12
Matches are distributed among these distances:
263 79 0.03
264 2 0.00
273 1 0.00
275 2 0.00
276 140 0.04
277 70 0.02
279 2 0.00
280 4 0.00
281 2 0.00
282 1 0.00
283 5 0.00
284 1 0.00
285 8 0.00
286 13 0.00
287 89 0.03
288 517 0.16
289 595 0.19
290 269 0.09
291 14 0.00
292 4 0.00
293 4 0.00
294 7 0.00
295 5 0.00
296 12 0.00
297 90 0.03
298 57 0.02
299 222 0.07
300 86 0.03
301 111 0.04
302 287 0.09
303 323 0.10
304 106 0.03
305 4 0.00
307 4 0.00
308 10 0.00
310 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (290 bp):
ATAGTTTGGCATGACAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
GCATTCAATCAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAGTCCATTTTGTCC
CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCATCAAATTTTGGCAAGGCAGTTT
GGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTCTT
AATTTTGCATTCAATCAATTTTGGCAGGCA
Found at i:76750526 original size:176 final size:174
Alignment explanation
Indices: 76750196--76750766 Score: 535
Period size: 175 Copynumber: 3.1 Consensus size: 174
76750186 GGCAAGGCAG
* * * * *
76750196 TTTGGTTGGGTAGTTTGGCTTGATAGTCCATTTCGTCCCAATTTGAATGCTTATTGAAATGTTTT
1 TTTGGTTGGGTAGTTTGGCATGACAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAATGTTAT
* *
76750261 CTTAATTTTGCATTCAATCAATTTTGGCAGGAAAGTTTGGCATGACAGTCCATTTTGTCCCAATT
66 CTTAATTTTGCAGTCAATCAATTTTGGCAGAAAAGTTTGGCATGACAGTCCATTTTGTCCCAATT
*
76750326 TGAAAGTTTATTAAAATGTCCTCTTAATTTTGCATTCAATCAAAT
131 TGAAAGCTTATTAAAATGTCCTCTTAATTTTGCATTCAATC-AAT
* *
76750371 TTTGGTTGGGTAGTTTGGCATGACCGTCCATTTCTTCCAAATTTGAAAT-CTTATAGAAATGTTA
1 TTTGGTTGGGTAGTTTGGCATGACAGTCCATTTCGTCCAAATTTG-AATGCTTATAGAAATGTTA
* *
76750435 TCTTAATTTTGCAGTCAGTCAAATTTTGGCA-AAACAGTTTGGCATGATAGTCCATTTTGTCCCA
65 TCTTAATTTTGCAGTCAATC-AATTTTGGCAGAAA-AGTTTGGCATGACAGTCCATTTTGTCCCA
76750499 ATTTGAATA-CTTA-TAGAAATGTCCTCTTAATTTTGCATTCAATCAAT
128 ATTTGAA-AGCTTATTA-AAATGTCCTCTTAATTTTGCATTCAATCAAT
** * *
76750546 TTTGGCAGGTAAGTTTTGCTGGGTAGTTTGGCATGACAGTTTATTTCGTCCCAATTTGAATGTTT
1 TTT-----G---G---T--TGGGTAGTTTGGCATGACAGTCCATTTCGTCCAAATTTGAATGCTT
* * ** * *
76750611 ATCGAAATATCCTCTTAATTTTGCATTTAATCAAATTTTGGCAAGGAAATTTGGCTAGACATTTT
53 ATAGAAATGTTATCTTAATTTTGCAGTCAATC-AATTTTGGC-A-GAAA-------AG----TTT
* * *
76750676 GGAATGACTA-TCCATTTTATCCCAATTT-AAACTCTTA-TAAAACTGTCCTCTTAATTTTGCAT
104 GGCATGAC-AGTCCATTTTGTCCCAATTTGAAA-GCTTATTAAAA-TGTCCTCTTAATTTTGCAT
76750738 TCAATCAATT
166 TCAATCAA-T
76750748 TTTGGTTGGGTAGTTTGGC
1 TTTGGTTGGGTAGTTTGGC
76750767 TGGGTAGTTT
Statistics
Matches: 330, Mismatches: 29, Indels: 60
0.79 0.07 0.14
Matches are distributed among these distances:
175 81 0.25
176 79 0.24
177 1 0.00
180 1 0.00
183 1 0.00
186 1 0.00
187 3 0.01
188 71 0.22
189 14 0.04
191 4 0.01
194 1 0.00
197 3 0.01
199 1 0.00
200 5 0.02
201 59 0.18
202 5 0.02
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (174 bp):
TTTGGTTGGGTAGTTTGGCATGACAGTCCATTTCGTCCAAATTTGAATGCTTATAGAAATGTTAT
CTTAATTTTGCAGTCAATCAATTTTGGCAGAAAAGTTTGGCATGACAGTCCATTTTGTCCCAATT
TGAAAGCTTATTAAAATGTCCTCTTAATTTTGCATTCAATCAAT
Found at i:76750770 original size:13 final size:13
Alignment explanation
Indices: 76750748--76750779 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
76750738 TCAATCAATT
*
76750748 TTTGGTTGGGTAG
1 TTTGGCTGGGTAG
76750761 TTTGGCTGGGTAG
1 TTTGGCTGGGTAG
76750774 TTTGGC
1 TTTGGC
76750780 ATGGCATCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.06, G:0.44, T:0.44
Consensus pattern (13 bp):
TTTGGCTGGGTAG
Found at i:76751832 original size:87 final size:87
Alignment explanation
Indices: 76751677--76751842 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 87
76751667 TTGGCTGGGT
* * * *
76751677 AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAGTGCCTATTGAAATGTCCTCTTAATTTTGC
1 AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAATGCCTATAGAAATATCCTCTTAATTTTAC
76751742 ATTCAATCAAATTTGATATGGA
66 ATTCAATCAAATTTGATATGGA
* * * * ** *
76751764 AGTTTGGCATGACAGTTCATTTCTTCCTAATTTGAATGTTTATAGAAATATTCTCTTAATTTTAC
1 AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAATGCCTATAGAAATATCCTCTTAATTTTAC
76751829 ATTCAATCAAATTT
66 ATTCAATCAAATTT
76751843 CGGCACAACA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 68 1.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (87 bp):
AGTTCGGCATGACAGTCCATTTCGTCCAAATTTGAATGCCTATAGAAATATCCTCTTAATTTTAC
ATTCAATCAAATTTGATATGGA
Found at i:76752214 original size:88 final size:88
Alignment explanation
Indices: 76752056--76752237 Score: 235
Period size: 88 Copynumber: 2.1 Consensus size: 88
76752046 TGTAGGCCAG
* *
76752056 TTTGGCTAGGTAGTTTGGCATGATAGTCTATTTCATCCCAATTTTGACACTTACAAAAATTTCCT
1 TTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTTGACACTTACAAAAATTTCCT
*
76752121 TTTAATTTTGCATACAATCAAAT
66 CTTAATTTTGCATACAATCAAAT
* * * *
76752144 TTTGGCTAGGTAGTTTGGCATGACATTCCATTTCATCCCAA-TTTGA-ATGTTTATAGAAATGTT
1 TTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTTGACA--CTTACAAAAAT-TT
* *
76752207 -CTCTTAATTTTGCATTCAATTAAAT
63 CCTCTTAATTTTGCATACAATCAAAT
76752232 TTTGGC
1 TTTGGC
76752238 AGGGCAATTT
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
86 1 0.01
87 5 0.06
88 74 0.90
89 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.42
Consensus pattern (88 bp):
TTTGGCTAGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTTGACACTTACAAAAATTTCCT
CTTAATTTTGCATACAATCAAAT
Found at i:76753676 original size:88 final size:88
Alignment explanation
Indices: 76753532--76753703 Score: 229
Period size: 88 Copynumber: 2.0 Consensus size: 88
76753522 TTGGCTGAGT
* * * * * *
76753532 AGTTTGGCATGACAATCCGTTTCGTCCCAACTTGAATGTTTATAGTAATGTTCTCTTAATTTTGC
1 AGTTTGGCATGACAATCCATTTCGTCCCAACTTGAATGTTTATAGAAATATCCTCTTAAATTTAC
*
76753597 ATTCAATCAAATTTTGGCAAGGA
66 ACTCAATCAAATTTTGGCAAGGA
* * * *
76753620 AGTTTGGTATGATAGTCCATTTCGTCCCAATTTGAATGCTTT-TAGAAATATCCTCTTAAATTTA
1 AGTTTGGCATGACAATCCATTTCGTCCCAACTTGAATG-TTTATAGAAATATCCTCTTAAATTTA
76753684 CACTCAATCAAATTTTGGCA
65 CACTCAATCAAATTTTGGCA
76753704 GGACAATTTG
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
88 69 0.96
89 3 0.04
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (88 bp):
AGTTTGGCATGACAATCCATTTCGTCCCAACTTGAATGTTTATAGAAATATCCTCTTAAATTTAC
ACTCAATCAAATTTTGGCAAGGA
Found at i:76753828 original size:288 final size:289
Alignment explanation
Indices: 76753464--76754083 Score: 680
Period size: 288 Copynumber: 2.1 Consensus size: 289
76753454 GTCTAAGTTA
* * * * ** ** * * * *
76753464 GAATGTTTATAGAAATATCATCTTAATTTTGAATTCAATCAAATTTTGGCCGGGCGGTTTGGCTG
1 GAATGTTTATAGAAATGTCCTCTTAATTATGCATTCAATC-AATTTCAGTAGAGCAGTTTTGCCG
* * * *
76753529 AGTAGTTTGGCATGACAATCCGTTTCGTCCCAACTTGAATGTTTATAGTAATGT-TCTCTTAATT
65 AGTAGTTTGGCATGACAATCCATTTCGTACCAACTTAAATGTTTATAGAAATGTCT-TCTTAATT
* * * * * *
76753593 TTGCATTCAATCAAATTTTGGCAAG-GAAGTTTGG-TATGATAGTCCATTTCGTCCCAATTTGAA
129 TGGAATTCAATAAAATTTTGG-AAGAGAAGTTTGGCT-TGACAATCAATTTCGTCCCAATTTGAA
* * * *
76753656 TGCTTTTAGAAATATCCTCTTAAATTT-ACACTCAATCAAATTTTGGC-AGGACAATTTGGCT-G
192 TGCTTATAGAAATATCCTCTTAAATTTGA-ACTCAACCAAATATTGGCAAGG-CAATTTGGCTCC
* * **
76753718 GTAGTTTTGCATGACAGTTTATTTCATCCCAATTT
255 GTAATTTGGCATGACAGTCCATTTCATCCCAATTT
* * *
76753753 TAAT-TCTTTTA-ATAATGTCCTCTTAATTTTGCATTCAATCAATTTCAGTAGAGCAGTTTTGCC
1 GAATGT-TTATAGA-AATGTCCTCTTAATTATGCATTCAATCAATTTCAGTAGAGCAGTTTTGCC
* * *
76753816 GAGTAGTTTGGCATGACAGTCCATTTCGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATT
64 GAGTAGTTTGGCATGACAATCCATTTCGTACCAACTTAAATGTTTATAGAAATGTCTTCTTAATT
* *
76753881 TGGAATTCAATAAAATTTTGGAAGAGCAGTTTGGCTTGACAATCAATTTTGTCCCAATTTGAATG
129 TGGAATTCAATAAAATTTTGGAAGAGAAGTTTGGCTTGACAATCAATTTCGTCCCAATTTGAATG
* * * * * * *
76753946 CTTATAGAGATGTCTTCTTAATTTTGAATTCAACCAAATATTGGCAAGGTAGTTTGGCTCCGTAA
194 CTTATAGAAATATCCTCTTAAATTTGAACTCAACCAAATATTGGCAAGGCAATTTGGCTCCGTAA
*
76754011 TTTGGCATGACAGTCCATTTCGTCCCAATTT
259 TTTGGCATGACAGTCCATTTCATCCCAATTT
* *
76754042 GAATGTTTATAGAAATGTCCTTTTAATTATGCATTTAATCAA
1 GAATGTTTATAGAAATGTCCTCTTAATTATGCATTCAATCAA
76754084 ATATTGGCAG
Statistics
Matches: 272, Mismatches: 49, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
287 3 0.01
288 167 0.61
289 100 0.37
290 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (289 bp):
GAATGTTTATAGAAATGTCCTCTTAATTATGCATTCAATCAATTTCAGTAGAGCAGTTTTGCCGA
GTAGTTTGGCATGACAATCCATTTCGTACCAACTTAAATGTTTATAGAAATGTCTTCTTAATTTG
GAATTCAATAAAATTTTGGAAGAGAAGTTTGGCTTGACAATCAATTTCGTCCCAATTTGAATGCT
TATAGAAATATCCTCTTAAATTTGAACTCAACCAAATATTGGCAAGGCAATTTGGCTCCGTAATT
TGGCATGACAGTCCATTTCATCCCAATTT
Found at i:76753921 original size:88 final size:88
Alignment explanation
Indices: 76753820--76754004 Score: 228
Period size: 88 Copynumber: 2.1 Consensus size: 88
76753810 TTTGCCGAGT
* * * * *
76753820 AGTTTGGCATGACAGTCCATTTCGTACCGATTTAAATGTTTATAGAAATGTCTTCTTAATTTGGA
1 AGTTTGGCTTGACAATCAATTTCGTACCAATTTAAATGCTTATAGAAATGTCTTCTTAATTTGGA
* *
76753885 ATTCAATAAAATTTTGG-AAGAGC
66 ATTCAACAAAATATTGGCAAG-GC
* * * * *
76753908 AGTTTGGCTTGACAATCAATTTTGTCCCAATTTGAATGCTTATAGAGATGTCTTCTTAATTTTGA
1 AGTTTGGCTTGACAATCAATTTCGTACCAATTTAAATGCTTATAGAAATGTCTTCTTAATTTGGA
* *
76753973 ATTCAACCAAATATTGGCAAGGT
66 ATTCAACAAAATATTGGCAAGGC
76753996 AGTTTGGCT
1 AGTTTGGCT
76754005 CCGTAATTTG
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
88 79 0.96
89 3 0.04
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (88 bp):
AGTTTGGCTTGACAATCAATTTCGTACCAATTTAAATGCTTATAGAAATGTCTTCTTAATTTGGA
ATTCAACAAAATATTGGCAAGGC
Found at i:76754142 original size:189 final size:186
Alignment explanation
Indices: 76753822--76754371 Score: 520
Period size: 189 Copynumber: 2.9 Consensus size: 186
76753812 TGCCGAGTAG
* *
76753822 TTTGGCATGACAGTCCATTTCGTACCGATTTAAATGTTTATAGAAATGT-CTTCTTAATTTGGAA
1 TTTGGCATGACAGTCCATTTCGTACCAATTTGAATGTTTATAGAAATGTCCTT-TTAATTT-GAA
* * * * * * * * *
76753886 TTCAATAAAATTTTGGAAGAGCAGTTTGGCT-TGACAATCAATTTTGTCCCAATTTGAATGCTTA
64 TTTAATCAAATTTTGGCAGGGTAGTTTGG-TATGATAGTCCATTTCGT-CCAATTTGAATGCTTA
* *
76753950 TAGAGATG-TCTTCTTAATTTTGAATTCAACCAAATATTGGCAAGGTA-GTTTGGCTCCGTAA
127 TAGAAATGTTC-TCTTAATTTTGAATTCAA-CAAATATTGGC-AGGGAGGTTTGGCTCCGTAA
* *
76754011 TTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATTATGCAT
1 TTTGGCATGACAGTCCATTTCGTACCAATTTGAATGTTTATAGAAATGTCCTTTTAATT-TGAAT
* *
76754076 TTAATCAAATATTGGCAGGGTAATTTGGTATGATAGTCCATTTCGTCCTAATTTGAATGCTTATA
65 TTAATCAAATTTTGGCAGGGTAGTTTGGTATGATAGTCCATTTCGTCC-AATTTGAATGCTTATA
* ** * * * ** *
76754141 GAAATGTTCTCTTAATTTTGCATTCAATTAGTCTTGGCAGGGAGGTTTGGTTGGGTAG
129 GAAATGTTCTCTTAATTTTGAATTCAACAAATATTGGCAGGGAGGTTTGGCTCCGTAA
* * * * **
76754199 TTTGACATGACAGTCCATTTCATTCTAATTTGAAAATTTATCA-AAATGTCCTTTTAATTTTGAA
1 TTTGGCATGACAGTCCATTTCGTACCAATTTGAATGTTTAT-AGAAATGTCCTTTTAA-TTTGAA
* * * * *
76754263 TTTAATCAAATTTTGACTA-GGTAGTTTGGCATGATTGTACATTTCATCCATATTTGAACT-CTT
64 TTTAATCAAATTTTGGC-AGGGTAGTTTGGTATGATAGTCCATTTCGTCCA-ATTTGAA-TGCTT
** * * * * *
76754326 ATAGAAATGTAATATTAATTTTGCATTTAAACAAATTTTGGTAGGG
126 ATAGAAATGTTCTCTTAATTTTG-AATTCAACAAATATTGGCAGGG
76754372 CAGTTTCACT
Statistics
Matches: 298, Mismatches: 51, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
187 5 0.02
188 142 0.48
189 145 0.49
190 6 0.02
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.40
Consensus pattern (186 bp):
TTTGGCATGACAGTCCATTTCGTACCAATTTGAATGTTTATAGAAATGTCCTTTTAATTTGAATT
TAATCAAATTTTGGCAGGGTAGTTTGGTATGATAGTCCATTTCGTCCAATTTGAATGCTTATAGA
AATGTTCTCTTAATTTTGAATTCAACAAATATTGGCAGGGAGGTTTGGCTCCGTAA
Found at i:76754254 original size:188 final size:188
Alignment explanation
Indices: 76753934--76754366 Score: 473
Period size: 188 Copynumber: 2.3 Consensus size: 188
76753924 CAATTTTGTC
* * *
76753934 CCAATTTGAATGCTTATAGAGATG-TCTTCTTAATTTTGAATTCAACCAAATATTGGCAAGGTAG
1 CCAATTTGAATGCTTATAGAAATGTTC-TCTTAATTTTGCATTCAACCAAATATTGGCAAGGGAG
* * **
76753998 TTTGGCTCCGTAATTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCT
65 TTTGGCTCCGTAATTTGACATGACAGTCCATTTCATCCCAATTTGAAAATTTATAGAAATGTCCT
* * * *
76754063 TTTAATTATGCATTTAATCAAATATTGGC-AGGGTAATTTGGTATGATAGTCCATTTCGT
130 TTTAATTATGAATTTAATCAAATATTGACTA-GGTAATTTGGCATGATAGTACATTTCGT
** * *
76754122 CCTAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAA-TTAGTCTTGGC-AGGGAG
1 CC-AATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAACCAAATATTGGCAAGGGA-
* ** * * *
76754185 GTTTGGTTGGGTAGTTTGACATGACAGTCCATTTCATTCTAATTTGAAAATTTATCA-AAATGTC
64 GTTTGGCTCCGTAATTTGACATGACAGTCCATTTCATCCCAATTTGAAAATTTAT-AGAAATGTC
* * * * *
76754249 CTTTTAATTTTGAATTTAATCAAATTTTGACTAGGTAGTTTGGCATGATTGTACATTTCAT
128 CTTTTAATTATGAATTTAATCAAATATTGACTAGGTAATTTGGCATGATAGTACATTTCGT
** * * * *
76754310 CCATATTTGAACT-CTTATAGAAATGTAATATTAATTTTGCATTTAAACAAATTTTGG
1 CCA-ATTTGAA-TGCTTATAGAAATGTTCTCTTAATTTTGCATTCAACCAAATATTGG
76754367 TAGGGCAGTT
Statistics
Matches: 203, Mismatches: 34, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
187 5 0.02
188 149 0.73
189 47 0.23
190 2 0.01
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (188 bp):
CCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAACCAAATATTGGCAAGGGAGT
TTGGCTCCGTAATTTGACATGACAGTCCATTTCATCCCAATTTGAAAATTTATAGAAATGTCCTT
TTAATTATGAATTTAATCAAATATTGACTAGGTAATTTGGCATGATAGTACATTTCGT
Found at i:76755843 original size:40 final size:40
Alignment explanation
Indices: 76755785--76756057 Score: 184
Period size: 40 Copynumber: 6.8 Consensus size: 40
76755775 GGATATAGCG
* * * * *
76755785 ACTCGCTCGATTGTCTTCGGGACATT-GCCCAGTTATAGTG
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTT-TAGTA
*
76755825 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* * * *
76755865 ACTCGCACGAGTGCCTTCGGGAC-TTAACCCGGTTTTGGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCGG-TTTAGTA
* * * * *
76755905 ACTCGCACAAATGCCTTCGGGAC-TTAACCTGATTTTGGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCG-GTTTAGTA
* * * * *
76755945 ACTCGCACAAATGCCTTCGGGAC-TTAACCTGATTTTGGTA
1 ACTCGCACAATTGCCTTCGGGACATTAGCCCG-GTTTAGTA
* * *
76755985 ACTCGCACAAATGCCTTTGGGA-ATT-GACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATTAG-CCCGG-TTTAGTA
* **
76756025 ACTTAGCACAAAAGCCTTCGGGAC-TTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATTAGCCCGG
76756058 ACACCATTCG
Statistics
Matches: 198, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.02
40 168 0.85
41 26 0.13
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
ACTCGCACAATTGCCTTCGGGACATTAGCCCGGTTTAGTA
Found at i:76755911 original size:80 final size:80
Alignment explanation
Indices: 76755827--76756057 Score: 295
Period size: 80 Copynumber: 2.9 Consensus size: 80
76755817 TTATAGTGAT
* * *
76755827 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAGTGCCTTCGGGACTTAA
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
76755892 CCCGGTTTTGGTAAC
66 CCCGGTTTTGGTAAC
* * * *
76755907 TCGCACAAATGCCTTCGGGACTTA-ACCTGATTTTGGTAACTCGCACAAATGCCTTCGGGACTTA
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGA-TTTAGTAACTCGCACAAATGCCTTCGGGACTTA
* *
76755971 ACCTGATTTTGGTAAC
65 ACCCGGTTTTGGTAAC
* * * *
76755987 TCGCACAAATGCCTTTGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTT
1 TCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTT
*
76756051 AGCCCGG
64 AACCCGG
76756058 ACACCATTCG
Statistics
Matches: 127, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
79 4 0.03
80 94 0.74
81 29 0.23
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
CCCGGTTTTGGTAAC
Found at i:76755986 original size:120 final size:121
Alignment explanation
Indices: 76755827--76756051 Score: 292
Period size: 120 Copynumber: 1.9 Consensus size: 121
76755817 TTATAGTGAT
* * * * *
76755827 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAGTGCCTTCGGGACTTAA
1 TCGCACAAATGCCTTCGGGAATTAGACCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
* * * *
76755892 CCCGGTTTTGGTAAC-TCGCACAAATGCCTTCGGGACTTAACCTGATTTTGGTAAC
66 CCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTAACCTGATTTTGGTAAC
* * * * *
76755947 TCGCACAAATGCCTTCGGGACTTA-ACCTGATTTTGGTAACTCGCACAAATGCCTTTGGGAATTG
1 TCGCACAAATGCCTTCGGGAATTAGACCGGA-TTTAGTAACTCGCACAAATGCCTTCGGGAATTA
*
76756011 ACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTA
65 ACCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTA
76756052 GCCCGGACAC
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
119 4 0.05
120 62 0.70
121 22 0.25
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (121 bp):
TCGCACAAATGCCTTCGGGAATTAGACCGGATTTAGTAACTCGCACAAATGCCTTCGGGAATTAA
CCCGGATTTAGTAACTTAGCACAAAAGCCTTCGGGACTTAACCTGATTTTGGTAAC
Found at i:76756774 original size:2 final size:2
Alignment explanation
Indices: 76756767--76756792 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
76756757 ATGTGCAAAC
76756767 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
76756793 GCTAGAGCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76761878 original size:100 final size:100
Alignment explanation
Indices: 76761700--76762292 Score: 362
Period size: 100 Copynumber: 6.2 Consensus size: 100
76761690 AAATAAATTA
* * * *
76761700 TTAATTTTTCATTCAATTAAATATTGGCA--CTACTGTTTGGCTTGGA-AGCTTGGCATGACAGT
1 TTAATTTTGCATTCAATCAAAT-TTGGCAGGC-A-AGTTTGGC-TGGACAGTTTGGCATGACAGT
* * * *
76761762 CCATTTCG-ATCGAATTTGATTGCTTAAAG-AATGTCCTC
62 CCATTTTGTA-CCAATTTGAATGCTTATAGAAATGTCCTC
* **
76761800 TTAATTTTGCATTCAATCAAATGTTGGCAGAGCAA-TTTGGTTGGGTAGTTTGGCATGACAGTCC
1 TTAATTTTGCATTCAATCAAAT-TTGGCAG-GCAAGTTTGGCTGGACAGTTTGGCATGACAGTCC
76761864 ATTTTGTACCAATTTGAATGCTTATAGAAATGTCCTC
64 ATTTTGTACCAATTTGAATGCTTATAGAAATGTCCTC
* * * *
76761901 TTAATTTTGCATTCAATC-AATTTAGGAAGGGAAGTTTGGCTGGACAGTTTGACTTGACAGTCCA
1 TTAATTTTGCATTCAATCAAATTT-GGCAGGCAAGTTTGGCTGGACAGTTTGGCATGACAGTCCA
* * *
76761965 TTCAT-T-CCAATTTGAATGTTTATCGAAATGTCCTC
65 TT-TTGTACCAATTTGAATGCTTATAGAAATGTCCTC
* * ** *
76762000 TTAATTTTGCATTTAATAAAATTTTGGCAGGGTA-TTT---TTG-CA---TGGC-T---A-TCC-
1 TTAATTTTGCATTCAATCAAA-TTTGGCAGGCAAGTTTGGCTGGACAGTTTGGCATGACAGTCCA
* * * *
76762051 TTTTCGTCCCAATTTGAATGTTTTTTGAAATGTCCTC
65 TTTT-GTACCAATTTGAATGCTTATAGAAATGTCCTC
** * *
76762088 TTAATTTTGCATTCAATCAAA--T----------TTTGGCTGGGTAGTTTGACATTACAGTCCAT
1 TTAATTTTGCATTCAATCAAATTTGGCAGGCAAGTTTGGCTGGACAGTTTGGCATGACAGTCCAT
** * * * *
76762141 TTCATCCCAATTTAAATACTTTTAGAAATGTCCT-
66 TTTGTACCAATTTGAATGCTTATAGAAATGTCCTC
** * * ** * *
76762175 TTGAATTTTGTGTTTAATCAATTTTGGCAGGGTAGTTTGGCTAGGA-AGTTTTGTATGACAGTCC
1 TT-AATTTTGCATTCAATCAAATTTGGCAGGCAAGTTTGGCT-GGACAGTTTGGCATGACAGTCC
* *
76762239 ATTTTGT-CCTAATTGGAATGCTTATAGAAATGTCATC
64 ATTTTGTACC-AATTTGAATGCTTATAGAAATGTCCTC
*
76762276 TTAGTTTTGCATTCAAT
1 TTAATTTTGCATTCAAT
76762293 TAATTTTAGC
Statistics
Matches: 389, Mismatches: 61, Indels: 86
0.73 0.11 0.16
Matches are distributed among these distances:
76 3 0.01
79 2 0.01
80 1 0.00
83 3 0.01
84 1 0.00
85 2 0.01
86 2 0.01
87 7 0.02
88 91 0.23
89 3 0.01
90 1 0.00
91 1 0.00
92 3 0.01
95 2 0.01
96 2 0.01
99 56 0.14
100 171 0.44
101 36 0.09
102 1 0.00
103 1 0.00
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.41
Consensus pattern (100 bp):
TTAATTTTGCATTCAATCAAATTTGGCAGGCAAGTTTGGCTGGACAGTTTGGCATGACAGTCCAT
TTTGTACCAATTTGAATGCTTATAGAAATGTCCTC
Found at i:76762121 original size:88 final size:88
Alignment explanation
Indices: 76761946--76762213 Score: 312
Period size: 88 Copynumber: 3.1 Consensus size: 88
76761936 TTGGCTGGAC
* * * *
76761946 AGTTTGACTTGACAGTCCA-TTCATTCCAATTTGAATGTTTATCGAAATGTCCTCTTAATTTTGC
1 AGTTTGACATGACAGTCCATTTCATCCCAATTTGAATGTTTTTAGAAATGTCCTCTTAATTTTGC
*
76762010 ATTTAATAAAATTTTGGCAGGGT
66 ATTTAATCAAATTTTGGCAGGGT
* * * * *
76762033 ATTTTTG-CATGGCTA-TCCTTTTCGTCCCAATTTGAATGTTTTTTGAAATGTCCTCTTAATTTT
1 A-GTTTGACATGAC-AGTCCATTTCATCCCAATTTGAATGTTTTTAGAAATGTCCTCTTAATTTT
* *
76762096 GCATTCAATCAAATTTTGGCTGGGT
64 GCATTTAATCAAATTTTGGCAGGGT
* * **
76762121 AGTTTGACATTACAGTCCATTTCATCCCAATTTAAATACTTTTAGAAATGTCCT-TTGAATTTTG
1 AGTTTGACATGACAGTCCATTTCATCCCAATTTGAATGTTTTTAGAAATGTCCTCTT-AATTTTG
**
76762185 TGTTTAATC-AATTTTGGCAGGGT
65 CATTTAATCAAATTTTGGCAGGGT
76762208 AGTTTG
1 AGTTTG
76762214 GCTAGGAAGT
Statistics
Matches: 151, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
87 34 0.23
88 117 0.77
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.44
Consensus pattern (88 bp):
AGTTTGACATGACAGTCCATTTCATCCCAATTTGAATGTTTTTAGAAATGTCCTCTTAATTTTGC
ATTTAATCAAATTTTGGCAGGGT
Found at i:76762384 original size:100 final size:99
Alignment explanation
Indices: 76762110--76762389 Score: 287
Period size: 100 Copynumber: 2.8 Consensus size: 99
76762100 TCAATCAAAT
* * * * * *
76762110 TTTGGCTGGGTAGTTTGACATTACAGTCCATTTCATCCCAATTTAAATACTTTTAGAAATGTCCT
1 TTTGGCTAGGTAGTTTGACATGACAGTCCATTTCATCCTAATTTGAATGCTTATAGAAATGT-CT
* * * * *
76762175 TTGAATTTTGTGTTTAATCAATTTTGGCAGGGTAG
65 TTTAATTTTGTATTCAATCAATTTTAGCAGGATAG
* * ** *
76762210 TTTGGCTAGGAAGTTTTG-TATGACAGTCCATTTTGTCCTAATTGGAATGCTTATAGAAATGTCA
1 TTTGGCTAGGTAG-TTTGACATGACAGTCCATTTCATCCTAATTTGAATGCTTATAGAAATGTC-
* * * *
76762274 TCTTAGTTTTGCATTCAATTAATTTTAGC-GTGATAG
64 TTTTAATTTTGTATTCAATCAATTTTAGCAG-GATAG
* *
76762310 TTTGGCTAGGTAGTTTGACATGACCA-TTCATTTCATCCTAATTTGAATGCTTAAAGAAATGGTC
1 TTTGGCTAGGTAGTTTGACATGA-CAGTCCATTTCATCCTAATTTGAATGCTTATAGAAAT-GTC
76762374 TTTTAATTTTGTATTC
64 TTTTAATTTTGTATTC
76762390 TCCATTTCAT
Statistics
Matches: 144, Mismatches: 30, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
99 6 0.04
100 129 0.90
101 9 0.06
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (99 bp):
TTTGGCTAGGTAGTTTGACATGACAGTCCATTTCATCCTAATTTGAATGCTTATAGAAATGTCTT
TTAATTTTGTATTCAATCAATTTTAGCAGGATAG
Found at i:76762397 original size:54 final size:54
Alignment explanation
Indices: 76762338--76762443 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
76762328 CATGACCATT
76762338 CATTTCATC-CTAATTTGAATGCTTAAAGAAATGGTCTT-TTAATTTTGTATTCTC
1 CATTTCATCTC-AATTTGAATGCTTAAAGAAAT-GTCTTATTAATTTTGTATTCTC
* * **
76762392 CATTTCATCTCAATTTTAATGTTTATTGAAATGTCTTATTAATTTTGTATTC
1 CATTTCATCTCAATTTGAATGCTTAAAGAAATGTCTTATTAATTTTGTATTC
76762444 AATCAAATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
53 5 0.11
54 40 0.87
55 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.09, T:0.50
Consensus pattern (54 bp):
CATTTCATCTCAATTTGAATGCTTAAAGAAATGTCTTATTAATTTTGTATTCTC
Found at i:76762567 original size:101 final size:102
Alignment explanation
Indices: 76762390--76765615 Score: 2703
Period size: 101 Copynumber: 32.6 Consensus size: 102
76762380 TTTTGTATTC
* * * * * * *
76762390 TCCATTTCATCTCAATTTTAATGT-TTATTGAAATGTCTTATTAATTTTGTATTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * *
76762454 TAGCAAGGCAGTTTGGCTAGGTAGTTTGGCATGATAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
76762491 TACATTTCGTCCCAATTTGAGTGTC-TATTGAACTGTCCTCTTAATTTTGCATTCAATCAAATTC
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * *
76762555 TGGCAGGGCAGTTTGG-TAAGGTAGTTTTGCAAGACAA
66 TGGCAGGGCAGTTTGGCT-GGGTAGTTTGGCATGATAG
* * *
76762592 TCCATTTTGTCCCAATCTGAATG-CTTATAGAAATGTCTTCTTAATTTTGCATTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* *
76762656 TGGTAGGGCAGTTTGGCTGGATAGTTTGGCATGATAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
76762693 TCCATTTCGTCCCAATTTTAAT-TCTTACAAAAATGTCCTCTTAATTTTGCATTCAATC-TATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* *
76762756 TTGCAGGGCAGTTTGGCTGGGTAGTTTAGCAATG-TAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGC-ATGATAG
* * * *
76762793 TCCATTTCTTCCCAATTTTAATG-CTTATAAAAATGTGCTCTTAATTTTGCATTCAAT--AATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* *** * * *
76762855 TAGCATACCAGTTTTGCTGAGTAGTTTGACATGATAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
76762892 TCGATTTCGTACCAATTTGAATGT-TTATAGAAATGTCATTTTAATTATGCATTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* *
76762956 TGGTA-GG-A------C-----AGTTTGGCATGACAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* ** * ** * *
76762980 TCAATTTTATCTCAATTTGAATG-CTTATAGTTATGTCCTCTTAATTTTGCATTCAGTCAAATAT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * * * *
76763044 TGGCAGGGTAGTTTAGCTTGGAACTTTGGCATGACAA
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * ** * * * * * *
76763081 TCTATTTCATCTGAATTTGATTG-CTTAAAGAAATATCCTCTTAATTTTACATTAAATCAAATAT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* *
76763145 TGGCAGGGCAATTTGGCTGGGTAGTTTGACATGACT-G
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGA-TAG
** * * * *
76763182 TCCATTTCGTATCAAATTGAATG-CCTATAGAAATGTCCTCTTGATTTTGCATTCAAT-TAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * *
76763245 TGGAAAGGAAGTTTGGCTGGATAGTTTGGCATGACAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * *
76763282 TCCATTTCGTTCCAATTTGAATGT-TTATAGAAATGTCCTCTTAATTTTGTATTAAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * * *
76763346 CT-ACATGGAAATTTAGCTGGGTATTTTGGCATGACT-G
66 -TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGA-TAG
* * * *
76763383 TCCATTTTGTCCCAATTTTAATGT-TTATTGAAATGTCCACTTAATTTTGCATTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
*
76763447 T--------AG--T---TGGGTAGTTTGTCATGATA-
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * * * *
76763470 ACCATTTAGTTCCAATCTGAATG-CTT-TCAGAAATGTCCTCTGAATTTTGCGTTCGATC-AATT
1 TCCATTTCGTCCCAATTTGAATGTCTTAT-AGAAATGTCCTCTTAATTTTGCATTCAATCAAATT
* * * **
76763532 TTGCCAAGGTAGTTTGGCTGGGTAGTTTTTCATGATAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* ** * *
76763570 TCCATTTTC-TCCCAATTGGAATG-CTTATAGAAATGTTGTCTTCATTTTGCATTCAAT-TAATT
1 TCCA-TTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATT
* * ** * * * *
76763632 TTAGCATGATAGTTTAGCTGGATAGTTTGACATGATCG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* *
76763670 TCCATTTCGTCCCAATTTGAATG-CTTAAAGAAATGACCTCTTAATTTTGCATTCAATC-AATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* ** * ** *
76763733 TGGCCA-GGTAGTTTCACTGGGTAATTTTCCATGACAG
66 TGG-CAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * *
76763770 TCCATTTCGTCCCAATTTGAATGT-TTACAAAAATGTCCTCTTAATTTTGCATTTAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * * *
76763834 TGGCAAGACAGTTTGGTTGGATAGTTTGGCGTGACAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
76763871 TCTATTTCATCCCAATTTTAATG-CTTATAAAAATGTCCTCTTAATTTTACATTCAATC-AATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* *
76763934 TGGCAGAGCAGTTTGGCTGGGTAGTTTGGTATGATAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * ** * *
76763971 TTCATTTCATATCAATTTAAATGT-TTATAGAAATGTCCTCTTAATTTTGCGTTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * *
76764035 TGGTAGGGTAGTTTGGC------G--TGACA--AT--
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
** * * *
76764060 T-CATTTTATCCCATTTTGAATG-CTTATAGAAATGTCCTCTTAATTTTGTATTCAATCAAATAT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
** * * * * *
76764123 TGGCAGGTTAGTTTGGCTTGGTAGTTTGACATTACAA
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
76764160 TCCATTTCGTCCCAATTTGAATGT-TTATAGAAATATCCTCTTACTTGTGCATTCAATCAAAATA
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AAATT
* * ** * *
76764224 TTGACAGGGTAGTTTGGCTGCATAGTTTGGCCTTATAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
76764262 TTCATTTCATCCCAATTTGAATG-CTTATAGAAATGTTCTCTTAATTTTGCAGTCAATC-AATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
** * *
76764325 TGGCAGGTAAGTTTGGCTGGATAGTTTGACATGATAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* *
76764362 TTCATTTCGTCCCAATTTGAAAGT-TTA-ATGAAATGTCCT-TTCAATTTTGCATTCAATCAAAT
1 TCCATTTCGTCCCAATTTGAATGTCTTATA-GAAATGTCCTCTT-AATTTTGCATTCAATCAAAT
** * * * * * * * * *
76764424 TTTGGTTGGGAAATCTGGCAT-GGAAATCTGGCATCACAT
64 TTTGGCAGGGCAGTTTGGC-TGGGTAGTTTGGCATGATAG
* *
76764463 TCCATTTTGTCCCAATTTGAATG-CTTATAGAAATGTTCTCTTAATTTTGCATTCAATC-AATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
76764526 TGGCAGGG-AGGTTTGGCTGGGTAGTTTGGCATGATAG
66 TGGCAGGGCA-GTTTGGCTGGGTAGTTTGGCATGATAG
*
76764563 TCCATTTCGTCCCAATTTGAAAGT-TTATAGAAATGTCCT-TTCAATTTTGCATTCAATCAAATT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTT-AATTTTGCATTCAATCAAATT
* * * * * *
76764626 TTGGCTGGGAAATTTGGTTAGGTAGTGTGGCATGATAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * ** *
76764664 TCTATTTCGTCCAAATTTGAA-CTCTTATATAAATGTAATCTTAATTTTGCATTTAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * *
76764728 TAGTAGGGCAGTTTCGCTTGGTAGTTCT-GCATGATAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTT-TGGCATGATAG
* * * *
76764765 TCCATTTTGTCCCAATTTGAATGT-TTATAGAAATGTCCTTTTAATTTTGCGTTCGATC-AATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * *
76764828 TTGCAGGGTAGTTTGGCTGGGTAGTTTGTCATGACAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
76764865 TCCATTCCGTCCAAATTTGAATG-CTTAAAGAAATG-CCTTCTTAATTTTGTATTCAATC-AATT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCC-TCTTAATTTTGCATTCAATCAAATT
** * * * * *
76764927 TTTTCAGGGAAGTTTGGTTGGGTAGTTTGACATTACAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * ** * *
76764965 TCCATTGCTTCAAAATTTGAATGT-TTGTCGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * * **
76765029 TGGCAAGGAAATTTTGTTGGGTAGTTTGGCATGGCAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * *
76765066 TTCATTTCGTACTAATTTGAACG-CTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
* * * * *
76765130 TGCCTGGGAAATTTGGCTGGGTAGTTTTGCATGATAG
66 TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
76765167 TCCATTTCAT-CCATATTTGAA-CTCTTATAGAAATGTCATTTTAATTCTGCATTCAATCAAATT
1 TCCATTTCGTCCCA-ATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATT
* *
76765230 TTGGTA-GG-A------C-----AGTTTGGCTTGATAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
** *
76765255 TCCATTTCG-CATAAATTTGAATG-CTTATAGAAATGTCCTCTTAATTTTTCATTCAATC-AATT
1 TCCATTTCGTC-CCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATT
* ** * *
76765317 TTGGAAGGAAAATTTGGCTGGGTAGTTTGGCATGACAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
** * *
76765355 TCCATTTCGTCCCAATTTGAATG-CTTATAGAAATGTATTCTTAATCTTT-CTTTCAATCAAATA
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAAT-TTTGCATTCAATCAAATT
* * * *
76765418 TTGGTAGGGCTGTTTGGC-AGGTAGTTTGGCATGACAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * *
76765455 TCTATTTTGTCCCAATTTGAATG-CTTATAGAAATGACTTCTTAATTTTGCATTTAATCAAATAT
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAAT-T
** * * * *
76765519 TT-GCAGGGTTGTTTAGCTGGATAGTTTGTCATGACAG
65 TTGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
* * * * * *
76765556 TCTATTTCGTCCCAATTTAAATG-CTTATAAAAATATCTTTTTAATTTTGCATTCAATCAA
1 TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA
76765616 TATTGGCTAT
Statistics
Matches: 2544, Mismatches: 455, Indels: 252
0.78 0.14 0.08
Matches are distributed among these distances:
86 7 0.00
87 55 0.02
88 211 0.08
89 5 0.00
90 1 0.00
91 3 0.00
93 6 0.00
94 3 0.00
95 2 0.00
96 7 0.00
98 4 0.00
99 113 0.04
100 929 0.37
101 1103 0.43
102 95 0.04
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (102 bp):
TCCATTTCGTCCCAATTTGAATGTCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTT
TGGCAGGGCAGTTTGGCTGGGTAGTTTGGCATGATAG
Found at i:76763342 original size:201 final size:201
Alignment explanation
Indices: 76762965--76765615 Score: 2266
Period size: 201 Copynumber: 13.4 Consensus size: 201
76762955 TTGGTAGGAC
* * * ** * * **
76762965 AGTTTGGCATGACAGTCAATTTTATCTCAATTTGAATGCTTATAGTTATGTCCTCTTAATTTTGC
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * * * **
76763030 ATTCAGTCAAATATTGGCAGGGTAGTTTAGCTTGGA-ACTTTGGCATGACAATCTATTTCATCTG
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGC-TGGATAGTTTGGCATGACAGTCCATTTCGTCCC
* * * * * * * *
76763094 AATTTGATTGCTTAAAGAAATATCCTCTTAATTTTACATTAAATCAAATATTGGCAGGGCAATTT
130 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTT
76763159 GGCTGGGT
194 GGCTGGGT
** * ** *
76763167 AGTTTGACATGACTGTCCATTTCGTATCAAATTGAATGCCTATAGAAATGTCCTCTTGATTTTGC
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * *
76763232 ATTCAAT-TAATTTTGGAAAGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTTCCA
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCA
* * * * * * *
76763296 ATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGTATTAAATCAAATTTCT-ACATGGAAATTT
131 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTT-TGGCAGGGTAGTTT
*
76763360 AGCTGGGT
194 GGCTGGGT
* * * * * *
76763368 ATTTTGGCATGACTGTCCATTTTGTCCCAATTTTAATGTTTATTGAAATGTCCACTTAATTTTGC
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * *
76763433 ATTCAATCAAATTTT--------AG-TT-G--GG-TAGTTTGTCATGATA-ACCATTTAGTTCCA
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCA
* * * * * *
76763484 ATCTGAATGCTT-TCAGAAATGTCCTCTGAATTTTGCGTTCGATCAATTTTGCCAAGGTAGTTTG
131 ATTTGAATGCTTAT-AGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTG
76763548 GCTGGGT
195 GCTGGGT
** * * ** *
76763555 AGTTTTTCATGA-TAGTCCATTTTC-TCCCAATTGGAATGCTTATAGAAATGTTGTCTTCATTTT
1 AGTTTGACATGACT-GTCCA-TTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* * * * *
76763618 GCATTCAAT-TAATTTTAGCA-TGATAGTTTAGCTGGATAGTTTGACATGATC-GTCCATTTCGT
64 GCATTCAATCAAATTTTGGCAGGGA-AGTTTGGCTGGATAGTTTGGCATGA-CAGTCCATTTCGT
* *
76763680 CCCAATTTGAATGCTTAAAGAAATGACCTCTTAATTTTGCATTCAATCAATTTTGGCCA-GGTAG
127 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGG-CAGGGTAG
**
76763744 TTTCACTGGGT
191 TTTGGCTGGGT
* ** * * *
76763755 AATTTTCCATGACAGTCCATTTCGTCCCAATTTGAATGTTTACAAAAATGTCCTCTTAATTTTGC
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * *
76763820 ATTTAATCAAATTTTGGCA-AGACAGTTTGGTTGGATAGTTTGGCGTGACAGTCTATTTCATCCC
66 ATTCAATCAAATTTTGGCAGGGA-AGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCC
* * * * *
76763884 AATTTTAATGCTTATAAAAATGTCCTCTTAATTTTACATTCAATCAATTTTGGCAGAGCAGTTTG
130 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTG
76763949 GCTGGGT
195 GCTGGGT
** * * ** *
76763956 AGTTTGGTATGA-TAGTTCATTTCATATCAATTTAAATGTTTATAGAAATGTCCTCTTAATTTTG
1 AGTTTGACATGACT-GTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTG
* * * * * **
76764020 CGTTCAATCAAATTTT------G--G--TAG--GG-TAGTTTGGCGTGACAATTCATTTTATCCC
65 CATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCC
* * * *
76764072 ATTTTGAATGCTTATAGAAATGTCCTCTTAATTTTGTATTCAATCAAATATTGGCAGGTTAGTTT
130 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTT
*
76764137 GGCTTGGT
194 GGCTGGGT
* ** * * *
76764145 AGTTTGACATTACAATCCATTTCGTCCCAATTTGAATGTTTATAGAAATATCCTCTTACTTGTGC
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * * * *
76764210 ATTCAATCAAAATATTGACAGGGTAGTTTGGCTGCATAGTTTGGCCTTATAGTTCATTTCATCCC
66 ATTCAATC-AAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCC
* *
76764275 AATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCAGTCAATCAATTTTGGCA-GGTAAGTTT
130 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGT-AGTTT
*
76764339 GGCTGGAT
194 GGCTGGGT
* *
76764347 AGTTTGACATGA-TAGTTCATTTCGTCCCAATTTGAAAGTTTA-ATGAAATGTCCT-TTCAATTT
1 AGTTTGACATGACT-GTCCATTTCGTCCCAATTTGAATGTTTATA-GAAATGTCCTCTT-AATTT
** * * * * * * *
76764409 TGCATTCAATCAAATTTTGGTTGGGAAATCTGGCATGGA-AATCTGGCATCACATTCCATTTTGT
63 TGCATTCAATCAAATTTTGGCAGGGAAGTTTGGC-TGGATAGTTTGGCATGACAGTCCATTTCGT
*
76764473 CCCAATTTGAATGCTTATAGAAATGTTCTCTTAATTTTGCATTCAATCAATTTTGGCAGGG-AGG
127 CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTA-G
76764537 TTTGGCTGGGT
191 TTTGGCTGGGT
* *
76764548 AGTTTGGCATGA-TAGTCCATTTCGTCCCAATTTGAAAGTTTATAGAAATGTCCT-TTCAATTTT
1 AGTTTGACATGACT-GTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTT-AATTTT
* * * * * *
76764611 GCATTCAATCAAATTTTGGCTGGGAAATTTGGTTAGG-TAGTGTGGCATGATAGTCTATTTCGTC
64 GCATTCAATCAAATTTTGGCAGGGAAGTTTGGCT-GGATAGTTTGGCATGACAGTCCATTTCGTC
* * ** * * * *
76764675 CAAATTTGAACT-CTTATATAAATGTAATCTTAATTTTGCATTTAATCAAATTTTAGTAGGGCAG
128 CCAATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAG
* *
76764739 TTTCGCTTGGT
191 TTTGGCTGGGT
* *
76764750 AGTTCTG-CATGA-TAGTCCATTTTGTCCCAATTTGAATGTTTATAGAAATGTCCTTTTAATTTT
1 AGTT-TGACATGACT-GTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTT
* * * * * * *
76764813 GCGTTCGATC-AATTTTTGCAGGGTAGTTTGGCTGGGTAGTTTGTCATGACAGTCCATTCCGTCC
64 GCATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCC
* * * ** *
76764877 AAATTTGAATGCTTAAAGAAATG-CCTTCTTAATTTTGTATTCAATCAATTTTTTCAGGGAAGTT
129 CAATTTGAATGCTTATAGAAATGTCC-TCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTT
*
76764941 TGGTTGGGT
193 TGGCTGGGT
* * * * ** * *
76764950 AGTTTGACATTACAGTCCATTGCTTCAAAATTTGAATGTTTGTCGAAATGTCCTCTTAATTTTGC
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
* * * * * * * * *
76765015 ATTCAATCAAATTTTGGCAAGGAAATTTTGTTGGGTAGTTTGGCATGGCAGTTCATTTCGTACTA
66 ATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCA
* * * * *
76765080 ATTTGAACGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGCCTGGGAAATTTG
131 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTGGCAGGGTAGTTTG
76765145 GCTGGGT
195 GCTGGGT
* * * *
76765152 AGTTTTG-CATGA-TAGTCCATTTCAT-CCATATTTGAACT-CTTATAGAAATGTCATTTTAATT
1 AG-TTTGACATGACT-GTCCATTTCGTCCCA-ATTTGAA-TGTTTATAGAAATGTCCTCTTAATT
* *
76765213 CTGCATTCAATCAAATTTTGGTA-GGACAGTTTGGC--------TT-G-AT---AGTCCATTTCG
62 TTGCATTCAATCAAATTTTGGCAGGGA-AGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCG
** * * **
76765264 -CATAAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTTCATTCAATCAATTTTGGAAGGAAA
126 TC-CCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTA
*
76765328 ATTTGGCTGGGT
190 GTTTGGCTGGGT
* * * **
76765340 AGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTATTCTTAATCTTT-
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAAT-TTTG
* * * ** * * *
76765404 CTTTCAATCAAATATTGGTAGGGCTGTTTGGCAGG-TAGTTTGGCATGACAGTCTATTTTGTCCC
65 CATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCC
* * * *
76765468 AATTTGAATGCTTATAGAAATGACTTCTTAATTTTGCATTTAATCAAATATTT-GCAGGGTTGTT
130 AATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AAT-TTTGGCAGGGTAGTT
* *
76765532 TAGCTGGAT
193 TGGCTGGGT
* * * * * * * * *
76765541 AGTTTGTCATGACAGTCTATTTCGTCCCAATTTAAATGCTTATAAAAATATCTTTTTAATTTTGC
1 AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
76765606 ATTCAATCAA
66 ATTCAATCAA
76765616 TATTGGCTAT
Statistics
Matches: 2005, Mismatches: 347, Indels: 195
0.79 0.14 0.08
Matches are distributed among these distances:
186 8 0.00
187 80 0.04
188 206 0.10
189 155 0.08
190 8 0.00
191 2 0.00
192 3 0.00
193 4 0.00
194 6 0.00
195 4 0.00
196 4 0.00
197 2 0.00
198 3 0.00
199 18 0.01
200 268 0.13
201 828 0.41
202 331 0.17
203 75 0.04
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (201 bp):
AGTTTGACATGACTGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTGC
ATTCAATCAAATTTTGGCAGGGAAGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCA
ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTGGCAGGGTAGTTTGG
CTGGGT
Found at i:76763485 original size:87 final size:87
Alignment explanation
Indices: 76763357--76763533 Score: 189
Period size: 87 Copynumber: 2.0 Consensus size: 87
76763347 TACATGGAAA
* ** * * *
76763357 TTTAGCTGGGTATTTTGGCATGACTGTCCATTTTGTCCCAATTTTAATG-TTT-ATTGAAATGTC
1 TTTAGCTGGGTAGTTTGGCATGACTAACCATTTAGTCCCAATCTGAATGCTTTCA--GAAATGTC
*
76763420 CACTTAATTTTGCATTCAATCAAAT
64 CACTGAATTTTGCATTCAATC-AAT
* * * *
76763445 TTTAGTTGGGTAGTTTGTCATGA-TAACCATTTAGTTCCAATCTGAATGCTTTCAGAAATGTCCT
1 TTTAGCTGGGTAGTTTGGCATGACTAACCATTTAGTCCCAATCTGAATGCTTTCAGAAATGTCCA
* *
76763509 CTGAATTTTGCGTTCGATCAAT
66 CTGAATTTTGCATTCAATCAAT
76763531 TTT
1 TTT
76763534 GCCAAGGTAG
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
86 6 0.08
87 44 0.59
88 23 0.31
89 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (87 bp):
TTTAGCTGGGTAGTTTGGCATGACTAACCATTTAGTCCCAATCTGAATGCTTTCAGAAATGTCCA
CTGAATTTTGCATTCAATCAAT
Found at i:76764050 original size:88 final size:88
Alignment explanation
Indices: 76763946--76764139 Score: 244
Period size: 88 Copynumber: 2.2 Consensus size: 88
76763936 GCAGAGCAGT
* * * * * *
76763946 TTGGCTGGGTAGTTTGGTATGATAGTTCATTTCATATCAATTTAAATGTTTATAGAAATGTCCTC
1 TTGGCAGGGTAGTTTGGCATGACAATTCATTTCATACCAATTTAAATGCTTATAGAAATGTCCTC
* *
76764011 TTAATTTTGCGTTCAATCAAATT
66 TTAATTTTGCATTCAATCAAATA
* * * * * *
76764034 TTGGTAGGGTAGTTTGGCGTGACAATTCATTTTATCCCATTTTGAATGCTTATAGAAATGTCCTC
1 TTGGCAGGGTAGTTTGGCATGACAATTCATTTCATACCAATTTAAATGCTTATAGAAATGTCCTC
*
76764099 TTAATTTTGTATTCAATCAAATA
66 TTAATTTTGCATTCAATCAAATA
*
76764122 TTGGCAGGTTAGTTTGGC
1 TTGGCAGGGTAGTTTGGC
76764140 TTGGTAGTTT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (88 bp):
TTGGCAGGGTAGTTTGGCATGACAATTCATTTCATACCAATTTAAATGCTTATAGAAATGTCCTC
TTAATTTTGCATTCAATCAAATA
Found at i:76764450 original size:13 final size:13
Alignment explanation
Indices: 76764432--76764457 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76764422 ATTTTGGTTG
76764432 GGAAATCTGGCAT
1 GGAAATCTGGCAT
76764445 GGAAATCTGGCAT
1 GGAAATCTGGCAT
76764458 CACATTCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
GGAAATCTGGCAT
Found at i:76765254 original size:88 final size:86
Alignment explanation
Indices: 76765152--76765335 Score: 219
Period size: 88 Copynumber: 2.1 Consensus size: 86
76765142 TTGGCTGGGT
* * * *
76765152 AGTTTTGCATGATAGTCCATTT-CATCCATATTTGAACT-CTTATAGAAATGTCATTTTAATTCT
1 AGTTTGGCTTGATAGTCCATTTCCAT--AAATTTGAA-TGCTTATAGAAATGTCATCTTAATTCT
* *
76765215 GCATTCAATCAAATTTTGGTAGGAC
63 GCATTCAATC-AATTTTGGAAGGAA
* * *
76765240 AGTTTGGCTTGATAGTCCATTTCGCATAAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTTC
1 AGTTTGGCTTGATAGTCCATTTC-CATAAATTTGAATGCTTATAGAAATGTCATCTTAATTCTGC
76765305 ATTCAATCAATTTTGGAAGGAA
65 ATTCAATCAATTTTGGAAGGAA
*
76765327 AATTTGGCT
1 AGTTTGGCT
76765336 GGGTAGTTTG
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
87 21 0.25
88 59 0.71
90 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (86 bp):
AGTTTGGCTTGATAGTCCATTTCCATAAATTTGAATGCTTATAGAAATGTCATCTTAATTCTGCA
TTCAATCAATTTTGGAAGGAA
Found at i:76765784 original size:3 final size:3
Alignment explanation
Indices: 76765776--76765826 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
76765766 AAGGGCCCAA
* * * *
76765776 ATT ATT ATT ATC ATT ACT ACT ATT ATT ATT ATT ATT AAAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
76765822 ATT AT
1 ATT AT
76765827 CTTTTTCATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 39 0.95
4 2 0.05
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:76769586 original size:50 final size:50
Alignment explanation
Indices: 76769511--76769684 Score: 240
Period size: 50 Copynumber: 3.5 Consensus size: 50
76769501 TGGCAACTAG
* *
76769511 TGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGAAAA
1 TGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAA
* ** *
76769561 TGATAAGTAATAGCTAAGGCTACACTTATCTGATCAAGGACAAGTGAAAG
1 TGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAA
* * *
76769611 TGATAAGTGATAGCTTCCGCTACACTTATCTGATCAAGGACAAATGACAAG
1 TGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA-AAA
* *
76769662 TGAAAAGTGGTAGCTTCGGCTAC
1 TGATAAGTGATAGCTTCGGCTAC
76769685 CTAATCAGTG
Statistics
Matches: 109, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 86 0.79
51 23 0.21
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (50 bp):
TGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAA
Found at i:76769698 original size:31 final size:31
Alignment explanation
Indices: 76769660--76769839 Score: 236
Period size: 31 Copynumber: 5.8 Consensus size: 31
76769650 ACAAATGACA
*
76769660 AGTGAAAAGTGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
76769691 AGTGAAAAGTGATAGCTTTGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
76769722 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
76769753 AATGAATAA-TGGTAGCTTTGGCTATCTGATC
1 AGTGAA-AAGTGGTAGCTTCGGCTACCTGATC
* *
76769784 AGTGAAAAGTGGTAGCTCCGTCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
76769815 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
76769840 AAGTGACAAG
Statistics
Matches: 126, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
30 2 0.02
31 122 0.97
32 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:76770010 original size:49 final size:48
Alignment explanation
Indices: 76769939--76770064 Score: 174
Period size: 49 Copynumber: 2.7 Consensus size: 48
76769929 GCATCAGTGA
* *
76769939 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATAGCATTGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATAGCATCGATATAT
*
76769987 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATAGCATCGATATAT
76770036 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTAT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTAT
76770065 GACATCATTA
Statistics
Matches: 74, Mismatches: 3, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
42 23 0.31
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.16
49 36 0.49
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATAGCATCGATATAT
Found at i:76770046 original size:42 final size:42
Alignment explanation
Indices: 76770000--76770111 Score: 154
Period size: 42 Copynumber: 2.7 Consensus size: 42
76769990 ATGTGATTAC
*
76770000 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATATGAAGAT
* *
76770042 GTGTAAGACCATAGCTGGGCTATGACATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCATTATATGAAGAT
* **
76770084 GTGTAAGACCATAGTTGAACTATGGCAT
1 GTGTAAGACCATAGCTGGGCTATGGCAT
76770112 TGAGAAAACG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 1 0.02
42 61 0.98
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCATTATATGAAGAT
Found at i:76771285 original size:100 final size:100
Alignment explanation
Indices: 76771147--76774211 Score: 2552
Period size: 101 Copynumber: 30.9 Consensus size: 100
76771137 TTGGCAAGAT
* *
76771147 AGTTTGGCTGGGTAGTTTCGCATGACAGTCCATTTCGTACCAATTTGAATGCTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* *
76771212 CTCTTAATTTTGTATTTAATCAATTTTTGCAGGGA
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* *
76771247 AGTTTGGCTGGGTAGTTTCGCATGACAGTCCATTTCGTACCAATTTGAATGCTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
** *
76771312 CTCTTAATTTTTTATTTAATCAATTTTTGCAGGGA
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* ** * *
76771347 AGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTATTCCCAATTTGAATGGTTATTGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* *
76771412 CTCTTAATTTTACATTCAATCAATTTTTGTAGGGA
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * * * *
76771447 AGTTTGGC-GAGGTAGTTTGGAATGACAGTCCATTTCTTCTCAATTTGAATGTTTATCGAAATGT
1 AGTTTGGCTG-GGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGT
* * **
76771511 CCTCTTAATTTTGCATTCAATTAAATTTTGGCAGATA
65 CCTCTTAATTTTGCATTCAA-TCAATTTTTGCAGGGA
* * * * * * * *
76771548 AATTTGGATGGG-AATTCTAGAATGACTGTCCATTTTGTGCCAATTTGAACT-CTTATAGAAATG
1 AGTTTGGCTGGGTAGTT-TGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATG
*
76771611 TCCTCTTAATTTTACATTCAAT--A-------A---A
64 TCCTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * *
76771636 ATTTTGGCTTGGTAGATTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * * * * **
76771701 TTCTTACTTTTGTATCCAATCAATTTTAG-AATGA
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * *
76771735 CAGTTTGGCTGGGTAGTTTGACATGACCA-TCCATTTCGTCCCAATTTTAATGCTTATCGAAATG
1 -AGTTTGGCTGGGTAGTTTGGCATGA-CAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATG
* * *
76771799 TCCTCTTAATTTTGCATTTAATCAATTTTGGCAGGGT
64 TCCTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * *
76771836 AGTTTGGCTGGGTAGTTTGCCATGACAGTCCATTTCATCCCAATTTTAATGCTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * * *
76771901 CTCTTAATTTTACATTTAATCAATTTTGGCAGGGT
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * * * * *
76771936 AGTTTGGCTAGGTAGTTTGCCATGACAGTCTATTTCATCCCAATTTGAATGGTTATAGAAATATC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* *
76772001 CTCTTAATTTTGCATTCAATCAAATTTTGGC-GAGGT
66 CTCTTAATTTTGCATTCAATC-AATTTTTGCAG-GGA
* *
76772037 AGTTTGGCTGGGTAGTTTGGCATGATAGCCCATTTCGTCCCAATTTGAACT-CTTATAGAAATGT
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGT
* * ** *
76772101 CCTCTTAATTTTGCATTCAATAAAATTTTGACAAAGT
65 CCTCTTAATTTTGCATTCAATCAATTTTTG-CAGGGA
* * * * * * *
76772138 AGTTTGGCTGGGTAGTTTGGTATGACGGTCTATTTCATCCTAATTTGAATGCTTATAAAAAAGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * * *
76772203 TTATTAATTTTGCATTCAATCAATTTTGGCA-GAA
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * ** * * *
76772237 CAGTTTGCCTGGATAG-TT----T-----T-CATTTCGTCTTAATTTGAATGTTTATAAAAATAT
1 -AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGT
* * * *
76772291 CCTCTTAATTTTGTATTGAATCAAATTATT-CTAGAGCA
65 CCTCTTAATTTTGCATTCAATC-AATTTTTGC-AG-GGA
* * * * *
76772329 A-TTTGGATGGGTAGATTGGCATAACAATCCATTTCATCCCAATTTGAACT-CTTATAGAAATGT
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGT
* * * * * *
76772392 CTTTTTAATTTTGCATTCAATAAAATTTTGTCAAGGC
65 CCTCTTAATTTTGCATTCAATCAATTTTTG-CAGGGA
* * * * * * * *
76772429 AGTTTGGCTTGATAATTTGGCATGATAGTCTATTTTGTCCCAATTTGAATGCCTATAGAATTGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* *
76772494 TTCTTAATTTTGCATTCAATAAATTTTTGC----A
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* ** * * *
76772525 A---------GGTAGTTTGGCATTACAAACCATTTCGTTCTAATTTGAATGTTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
*
76772581 CTCTTAATTTTTCATTC-A-C------T-CA---A
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * * * ** * *
76772604 ATTTTAGCAGGGTAGTTTGGCATGACAGTTCATTTTATCCCATTTTGAATGCTTATAGAAATGTT
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * * ** *
76772669 CGCTTAATTTTGCATTCAATCAAATCTTGGCAACGT
66 CTCTTAATTTTGCATTCAATC-AATTTTTGCAGGGA
* * *
76772705 AGTTTGGCTTGGTAGCTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGTTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * * * *
76772770 CTCTTAATTGTGCACTT-AATCAAATATTGGCAAGGC
66 CTCTTAATTTTGCA-TTCAATC-AATTTTTGCAGGGA
* * ** * * *
76772806 AGTTTGGCTGTGTAGTTTGGCATCACTTTTCATTTCATTCCC-ATTTGATTGCTTATAGAAATGT
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTC-GTCCCAATTTGAATGCTTATAGAAATGT
** * * * * *
76772870 TGTCTTAATTTTGCATTCAATCTATTTTGGTAAGTA
65 CCTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * * * * * *
76772906 GGTTTGGCTGGGTAGTTTGACAAGATAGTCCATTTTGTCCCAATTTGAAAGTTTATCA-AAATGT
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTAT-AGAAATGT
*
76772970 CCT-TTCAATTTTGCATTCAATCAAATTTTGGCTA-GGA
65 CCTCTT-AATTTTGCATTCAATC-AATTTTTGC-AGGGA
* * * * *
76773007 AATTTGGCAT-GGAAGTTTGGCATCATAGTCCATTTTGTCCCAATTTGAATGCTTATAGAAATGT
1 AGTTTGGC-TGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGT
** * * *
76773071 TATCTTAATTTTGCATTTAATCAATTTTGGTAGGGA
65 CCTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * * * * *
76773107 GGTTTTGGCTGGGTAGTTTGGCATGATAGTCCATTTTGTCCCAATTTGAAAGTTTATTGAAATGT
1 AG-TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGT
* ** **
76773172 CCT-TTCAATTTTGCATTCAATCAAATTTTGGTTGAAA
65 CCTCTT-AATTTTGCATTCAATC-AATTTTTGCAGGGA
* * * * *
76773209 AATTTGGTTGGTTAGTTTGGCATGATAGTCCATTTCAT-CCATATTTGAACT-CTTATAGAAATG
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCA-ATTTGAA-TGCTTATAGAAATG
** * * * * *
76773272 TAATCTTAATTTTACATTTAATCAAATTTTGGTAGGGC
64 TCCTCTTAATTTTGCATTCAATC-AATTTTTGCAGGGA
* * * * * * *
76773310 AGTTTCGCTTGGTAGTTAT-GCATGATATTCCATTTTGTCCCAATTTGAATGTTTATAAAAATGT
1 AGTTTGGCTGGGTAGTT-TGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGT
* * * * *
76773374 CCTTTTAATTTTGCGTTCGATCAATTTTTGTAGGGT
65 CCTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * ** * * * * *
76773410 AGTTTTGTTGAATAGTTTGTCATTACAGTCCATTTCGTCCAAATTTGAATGTTTAAAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* *
76773475 CTCTTAATTTTGTATTCAATCAATTTTTACAGGGA
66 CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
* * ** * **
76773510 AGTTTGGCTGGGTAGTTTGACATGACAGTCCATTTCTTCAAAATTTGAATGTTTATCTAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* *
76773575 CTCTTAATTTTGCATTCAATCAAATTTTGGCAGGCA
66 CTCTTAATTTTGCATTCAATC-AATTTTTGCAGGGA
* * * * * * * * *
76773611 AATTTTGTTGGCTAGTTTGGCATGACAGTTCATTTCATACCAATTTGAACGTTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * *
76773676 CTCTTAATTTTGCATTCAATCAAATTTTGCTTGAGA
66 CTCTTAATTTTGCATTCAATCAATTTTTGC-AGGGA
* * * * *
76773712 AATTTGGCTGGGTAGTTTTGCATGATAGTCCATTTCAT-CCAGATTTTAACT-CTTATAGAAATG
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCA-ATTTGAA-TGCTTATAGAAATG
* * * * * *
76773775 TCATTTTAGTTCTGCATTCAATCAAATTTTGGTA-GGA
64 TCCTCTTAATTTTGCATTCAATC-AATTTTTGCAGGGA
* * * * *** *
76773812 CAGTTTGGCTTGGTAGTTTGGCTTGATAGTCCATTTTGTATAAATTTGAATGCTTATAAAAATGT
1 -AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGT
* * *
76773877 CCTCTTAATTTTTCGTAATTTTTCGTTCAATCAATTTTGGCA-AGA
65 CCTCTTAA-TTTT-G--------CATTCAATCAATTTTTGCAGGGA
* * * *
76773922 CAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGCAATGA
1 -AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGT
* * ** * *
76773987 CTTCTTAATTTTTCATTCAATCAAACATTAGCAGGGC
65 CCTCTTAATTTTGCATTCAATC-AATTTTTGCAGGGA
* * * *
76774024 TGTTTGGCT-GGTATTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGAC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * * *
76774088 TTCTTAATTTTGCAGTCAATCAAATATTTGCAGGGT
66 CTCTTAATTTTGCATTCAATC-AATTTTTGCAGGGA
* * *
76774124 TGTTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCAATTTAAATGCTTATAGAAATGTC
1 AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
* * *
76774189 TTTTTAATTTTACATTCAATCAA
66 CTCTTAATTTTGCATTCAATCAA
76774212 ATATTGGCTG
Statistics
Matches: 2422, Mismatches: 427, Indels: 232
0.79 0.14 0.08
Matches are distributed among these distances:
78 1 0.00
79 3 0.00
86 1 0.00
87 58 0.02
88 125 0.05
89 50 0.02
90 19 0.01
91 4 0.00
92 2 0.00
95 2 0.00
96 2 0.00
98 3 0.00
99 14 0.01
100 921 0.38
101 1090 0.45
102 43 0.02
103 1 0.00
109 4 0.00
110 71 0.03
111 8 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.41
Consensus pattern (100 bp):
AGTTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTC
CTCTTAATTTTGCATTCAATCAATTTTTGCAGGGA
Found at i:76771843 original size:13 final size:13
Alignment explanation
Indices: 76771825--76771854 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
76771815 TTTAATCAAT
76771825 TTTGGCAGGGTAG
1 TTTGGCAGGGTAG
*
76771838 TTTGGCTGGGTAG
1 TTTGGCAGGGTAG
76771851 TTTG
1 TTTG
76771855 CCATGACAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.07, G:0.43, T:0.40
Consensus pattern (13 bp):
TTTGGCAGGGTAG
Found at i:76772653 original size:88 final size:87
Alignment explanation
Indices: 76772444--76772712 Score: 306
Period size: 88 Copynumber: 3.1 Consensus size: 87
76772434 GGCTTGATAA
* * * *
76772444 TTTGGCATGATAGTCTATTTTGTCCCAATTTGAATGCCTATAGAATTGTCTTCTTAATTTTGCAT
1 TTTGGCATGACAGTC-ATTTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCAT
*
76772509 TCAAT-AAATTTTTGCAAGGTAG
65 TCAATCAAATTTTAGCAAGGTAG
* ** * * * * *
76772531 TTTGGCATTACAAACCATTTCGTTCTAATTTGAATGTTTATAGAAATGTCCTCTTAATTTTTCAT
1 TTTGGCATGAC-AGTCATTTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCAT
* *
76772596 TCACTCAAATTTTAGCAGGGTAG
65 TCAATCAAATTTTAGCAAGGTAG
* * * *
76772619 TTTGGCATGACAGTTCATTTTATCCCATTTTGAATGCTTATAGAAATGTTCGCTTAATTTTGCAT
1 TTTGGCATGACAG-TCATTTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCAT
* * *
76772684 TCAATCAAATCTTGGCAACGTAG
65 TCAATCAAATTTTAGCAAGGTAG
76772707 TTTGGC
1 TTTGGC
76772713 TTGGTAGCTT
Statistics
Matches: 147, Mismatches: 32, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
87 55 0.37
88 92 0.63
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.42
Consensus pattern (87 bp):
TTTGGCATGACAGTCATTTTGTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATT
CAATCAAATTTTAGCAAGGTAG
Found at i:76773929 original size:110 final size:111
Alignment explanation
Indices: 76773791--76774098 Score: 289
Period size: 110 Copynumber: 2.9 Consensus size: 111
76773781 TAGTTCTGCA
* * * * * * ** *
76773791 TTCAATCAAATTTTGGTAGGACAGTTTGGCTTGGTAGTTTGGCTTGATAGTCCATTTTGTATAAA
1 TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACAAA
*
76773856 TTTGAATGCTTATAAAAATGTCCTCTTAATTTTTCGTAATTTTTCG
66 TTTGAATGCTTATAAAAATGACCTCTTAATTTTTCGTAATTTTTCG
* *
76773902 TTCAATC-AATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATCCCAA
1 TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACAAA
** *
76773966 TTTGAATGCTTATAGCAATGACTTCTTAATTTTTC---A-------
66 TTTGAATGCTTATAAAAATGACCTCTTAATTTTTCGTAATTTTTCG
** * * * ** * * *
76774002 TTCAATCAAACATTAGCAGGGCTGTTTGGCT-GGTATTTTGGCATGACAGTCCATTTCATCCCAA
1 TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACAAA
* *
76774066 TTTGAATGCTTATAGAAATGACTTCTTAATTTT
66 TTTGAATGCTTATAAAAATGACCTCTTAATTTT
76774099 GCAGTCAATC
Statistics
Matches: 172, Mismatches: 24, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
100 71 0.41
101 16 0.09
107 1 0.01
110 77 0.45
111 7 0.04
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.41
Consensus pattern (111 bp):
TTCAATCAAATTTTGGCAAGACAATTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATACAAA
TTTGAATGCTTATAAAAATGACCTCTTAATTTTTCGTAATTTTTCG
Found at i:76774214 original size:101 final size:100
Alignment explanation
Indices: 76773925--76774216 Score: 458
Period size: 100 Copynumber: 2.9 Consensus size: 100
76773915 GGCAAGACAA
*
76773925 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGCAATGACTT
1 TTTGGCT-GGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGACTT
* *
76773990 CTTAATTTTTCATTCAATCAAACATTAGCAGGGCTG
65 CTTAATTTTACATTCAATCAAATATTAGCAGGGCTG
*
76774026 TTTGGCTGGTATTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGACTTC
1 TTTGGCTGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGACTTC
* * * *
76774091 TTAATTTTGCAGTCAATCAAATATTTGCAGGGTTG
66 TTAATTTTACATTCAATCAAATATTAGCAGGGCTG
* * *
76774126 TTTGGCTGGATAGTTTGGCATGACAGTCCATTTCGTCCCAATTTAAATGCTTATAGAAATGTCTT
1 TTTGGCTGG-TAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGACTT
*
76774191 TTTAATTTTACATTCAATCAAATATT
65 CTTAATTTTACATTCAATCAAATATT
76774217 GGCTGTAGAC
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
100 95 0.54
101 81 0.46
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (100 bp):
TTTGGCTGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGACTTC
TTAATTTTACATTCAATCAAATATTAGCAGGGCTG
Found at i:76774565 original size:21 final size:22
Alignment explanation
Indices: 76774541--76774582 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
76774531 ACAACAAGCA
* *
76774541 TTCTAT-TTTTTTTTTCTTTTC
1 TTCTATCTTTCTTTTTATTTTC
76774562 TTCTATCTTTCTTTTTATTTT
1 TTCTATCTTTCTTTTTATTTT
76774583 TATTTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (22 bp):
TTCTATCTTTCTTTTTATTTTC
Found at i:76774960 original size:155 final size:153
Alignment explanation
Indices: 76774776--76775076 Score: 430
Period size: 155 Copynumber: 2.0 Consensus size: 153
76774766 TTTAAAAGAG
*
76774776 AGTTTAGATTTTAAAAATAAAAATCTGTTTTTTAGTCATTTTAAAGG-AAAGTTTAAAA-TTTTA
1 AGTTTAGATTTTAAAAATAAAAATATG-TTTTTAGTCATTTTAAAGGAAAAG-TTAAAATTTTTA
* * * * *
76774839 AAAT-AAGTTTTGATTTTTTTCAACTATTTTGAAATAAAAACTTTGATCTTTAAGAAAAGTAGTG
64 AAATAAAATTTTGATCTTTATCAACTATTTCGAAAT-AAAACTTTGATCTTTAAGAAAAATAGTG
*
76774903 ATTTTTTTTAAAAGAAAAAAAAATGAA
128 ATTTTTCTTAAAA-AAAAAAAAATGAA
*
76774930 AGTTTAGATTTTTAAGAAA-AAAAATATGTTTTTAGTCGTTTTAAAGGAAAAGTTAAAATTTTTA
1 AGTTTAGA-TTTTAA-AAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAAGTTAAAATTTTTA
**
76774994 AAATAAAATTTTGATCTTTATCAACTATTTCGAAATAAAGTTTTGATCTTTAAGAAAAATAGTGA
64 AAATAAAATTTTGATCTTTATCAACTATTTCGAAATAAAACTTTGATCTTTAAGAAAAATAGTGA
76775059 TTTTTCTTAAAAAAAAAA
129 TTTTTCTTAAAAAAAAAA
76775077 GCTTTGATTT
Statistics
Matches: 132, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
154 38 0.29
155 64 0.48
156 30 0.23
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (153 bp):
AGTTTAGATTTTAAAAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAAGTTAAAATTTTTAAA
ATAAAATTTTGATCTTTATCAACTATTTCGAAATAAAACTTTGATCTTTAAGAAAAATAGTGATT
TTTCTTAAAAAAAAAAAAATGAA
Found at i:76776441 original size:100 final size:99
Alignment explanation
Indices: 76776299--76778685 Score: 1796
Period size: 100 Copynumber: 24.4 Consensus size: 99
76776289 GGCAGGACAA
* * * *
76776299 TTTGGCTGGGTAGTTTGGCATGAGAATCCATTTCGTACCAATTTGAATGTTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
76776364 CTTAATTTTGCATTCAATCAATTTCTGTAGGGAAG
66 CTTAATTTTGCATTCAATCAATTT-TGTAGGGAAG
* * * * * *
76776399 TTTGGCTGGGTAGTTTAGCATGACAGTCAATTTCTTCCCAATTTGAATGTTTATTGAAGTGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * *
76776464 CATAATTTTGCATTCAATCAAATTTTGGCAGGGAAA
66 CTTAATTTTGCATTCAATC-AATTTT-GTAGGGAAG
* * * * * *
76776500 TTTTG-TTGGTAGTTTGGCATGACAGTCAATATT-GTACCAATTCGAATGCTTATAGAAATGTCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCAT-TTCGTCCCAATTTGAATGCTTATAGAAATGTCC
** * *
76776563 TCTTAATTTCACATTCGATCAATTTTTGCAGGGAAG
65 TCTTAATTTTGCATTCAATCAA-TTTTGTAGGGAAG
* * * * * * *
76776599 TTTGGCTAGGTAGTTTGGAATGACAGTTCATTTCTTCCCAATTTGAATGTTTATCAAAAAT-T-T
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTAT-AGAAATGTCC
* *
76776662 TCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAA
65 TCTTAATTTTGCATTCAATC-AATTTT-GTAGGGAAG
* * * * * *
76776699 TTTGGCTGGGAATTTTGGCATAACTGTCCATTTTGTCCCAATTTGAACT-CTTATAGAAATGTTC
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTCC
* * * *
76776763 TCTTAGTTTTACATTTAATCAAATTT-T---G-A-
65 TCTTAATTTTGCATTCAATCAATTTTGTAGGGAAG
* * * *
76776792 -----CTTGGTAGTTTGGCATGGCAGTCTATTTCGTCCTAATTTGAATGCTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * * * *
76776852 CTAAATTTTACGTTCAATCAAATTTGGCAAGGCAA-
66 CTTAATTTTGCATTCAATC-AATTTTG-TAGGGAAG
* * *
76776887 TTTGGCTGGGTAGTTTTGCATGACAGTTCATTTCGTCCCGATTTGAATGCTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * *
76776952 CTTAATTTTGCATTCAATCAATTTTAGAAAGGCAG
66 CTTAATTTTGCATTCAATCAATTTT-GTAGGGAAG
76776987 TTTGGCTGGGTAGTTTGGCATGACCA-TCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
1 TTTGGCTGGGTAGTTTGGCATGA-CAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
* **
76777051 TTTTAATTTTGCATT---T-AA----CCA---AA-
65 TCTTAATTTTGCATTCAATCAATTTTGTAGGGAAG
* * * * * * *
76777074 TTTGGTTGAGAAGTTTGCCATGACAGTCTATTTCGTCCCAATTTGAATGCTTATGGAAATGTCAT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * *
76777139 CTTAATTTTGCATTCAATAAAAATTTGGAAGGGTAG
66 CTTAATTTTGCATTCAAT--CAATTTTGTAGGGAAG
* * * *
76777175 TTTGGCTAGGTAGTTTGGCATGATAGCCCAATTCG-CCTCAATTTGAACT-CTTATAGAAATG-C
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCC-CAATTTGAA-TGCTTATAGAAATGTC
* * * * * ** *
76777237 TCTATTAATTTTGCATTTAATAAAATCTTGGCAAAGTAG
64 -CTCTTAATTTTGCATTCAAT-CAAT-TTTGTAGGGAAG
* * ** * * *
76777276 TTTGGTTGGGTAGTTTGGGATGACAGTTTATTTCGTCCTAATTTGAATGCTTATAAAAATGTCTT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
76777341 CTAAATTTTGCATTCAATCAATTTTGGCA-GGATAG
66 CTTAATTTTGCATTCAATCAATTTT-GTAGGGA-AG
** * * * *
76777376 TTTGATTGGGTAGTTTGACATGACAGTCCATTTCATCCCAA--TG--T--TTATAAAAATTTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * *
76777435 CTTATTTTTGCATTCAATCAAATTCTTCTAGAGCAA-
66 CTTAATTTTGCATTCAATC-AATT-TTGTAG-GGAAG
* * * * * *
76777471 TTTGGCAGAGTAGTTTGGCATAACAGTCTATTTCGTCCCAATTTGAACT-CTTATAAAAATGTTC
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAA-TGCTTATAGAAATGTCC
* * * * *
76777535 TCTTAATTTTGCTTTTAATAAAAATTTGTCAGGGCAG
65 TCTTAATTTTGCATTCAAT-CAATTTTGT-AGGGAAG
* * * * * *
76777572 TTTGGCTTGGTAGTTTGGCATGACAGTCTATTTCATCTCAATTTGAATGCCTATTGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
76777637 CTTAATTTTGCATTCAATCAATTTT-T------G
66 CTTAATTTTGCATTCAATCAATTTTGTAGGGAAG
* * * * *
76777664 --T---AGGGTAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCTTATAGAAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * *
76777724 CTTGATTTTTCATTCAATAAAATTTTGGTAGGGCCA-
66 CTTAATTTTGCATTCAAT-CAATTTT-GTAGGG-AAG
* * ** ** *
76777760 TTTGGTTGTGTAGTTTGGCATGACAACCCATTTTTTTTTCCCAATTTGAATGCTTATAGAAATAT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCA---TTTCGTCCCAATTTGAATGCTTATAGAAATGT
* * *
76777825 CCTTTTATTTTTGCATTTAATCAATTTTGGTAGGGCAA-
63 CCTCTTAATTTTGCATTCAATCAATTTT-GTAGGG-AAG
* * * *
76777863 TTT-GCTAGGGTAGTTTGGAATGACAGTCCATTTCATCCTAATTTGAATGCTTATATAAATGTCC
1 TTTGGCT-GGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCC
**
76777927 TCTTAA-AGTGCATTCAATCAAATTTTGGTAGGGCAA-
65 TCTTAATTTTGCATTCAATC-AATTTT-GTAGGG-AAG
* * * * *
76777963 TTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCTCAATTTGAATGCTTATAGAAATTTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
76778028 CTTAATTTTGCATTCAATCAA-TTT-T-----A-
66 CTTAATTTTGCATTCAATCAATTTTGTAGGGAAG
* * * * ** * * * * **
76778054 ----GCAGGGTAGTTTAGCCTAACAGTTAATTGCCTTCCAATTTGAATGCTTAAAGAAATGTATT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
76778115 CTTAATTTTGCATTCAATCTAATTTTGGTA-GGACAG
66 CTTAATTTTGCATTCAATC-AATTTT-GTAGGGA-AG
* * *
76778151 TTTGGCTGGGTAGTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCGT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
76778216 CTTAATTTTTCATTCAATCAAATTT-TAGCGG-A-
66 CTTAATTTTGCATTCAATCAATTTTGTAG-GGAAG
* * * *
76778248 ----G-T---T-GTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * **
76778304 CTTAATTTTGCATTTAAGCAAATATTTGCAGGGTGG
66 CTTAATTTTGCATTCAATC-AAT-TTTGTAGGGAAG
* * * * * * * * *
76778340 TTTGGCAGAGTAGTTTGACATGACAATCTACTTCATCCCAAATTGAATGCTTATAGTAATGTCCT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* *
76778405 CTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAG
66 CTTAATTTTGCATTCAATC-AATTTT-GTAGGGAAG
* * ** * * * * *
76778441 TTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAATGTCAT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
* * * *
76778506 CTTATTTTTGCTTTCAATCAATTTTGTCAGAGTAG
66 CTTAATTTTGCATTCAATCAATTTTGT-AGGGAAG
* * * * *
76778541 TTTAGCTGGGTAGTTTGGCTTGATAGTCCATTTTGTTCCAATTTGAATGCTTATA-AAATTGTCC
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAA-TGTCC
* * *
76778605 TCTT-ATATTTGCATTCAACCAAATTTTGGCAGGGCAG
65 TCTTAAT-TTTGCATTCAATC-AATTTT-GTAGGGAAG
* * * *
76778642 TTTGGCTGGTTAGTTTGGCATGATAATCGATTTCGTCCCAATTT
1 TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTT
76778686 AGCACTTACA
Statistics
Matches: 1824, Mismatches: 339, Indels: 247
0.76 0.14 0.10
Matches are distributed among these distances:
86 2 0.00
87 201 0.11
88 134 0.07
89 10 0.01
90 8 0.00
91 5 0.00
92 2 0.00
93 3 0.00
94 31 0.02
95 40 0.02
96 8 0.00
97 7 0.00
98 6 0.00
99 74 0.04
100 640 0.35
101 566 0.31
102 7 0.00
103 37 0.02
104 43 0.02
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (99 bp):
TTTGGCTGGGTAGTTTGGCATGACAGTCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCT
CTTAATTTTGCATTCAATCAATTTTGTAGGGAAG
Found at i:76776933 original size:188 final size:187
Alignment explanation
Indices: 76776607--76776976 Score: 453
Period size: 188 Copynumber: 2.0 Consensus size: 187
76776597 AGTTTGGCTA
* * * *
76776607 GGTAGTTTGGAATGACAGTTCATTTCTTCCCAATTTGAATGTTTATCAAAAATTTTCTTAATTTT
1 GGTAGTTTGGAATGACAGTTCATTTCGTCCCAATTTGAATGCTTATCAAAAATTCTCTAAATTTT
* * * *
76776672 GCATTCAATCAAATTTTGGCAGGGAAATTTGGCTGGGAATTTTGGCATAACTGTCCATTTTGTCC
66 ACATTCAATCAAATTTTGGCAAGGAAATTTGGCTGGGAATTTTGGCATAACAGTCCATTTCGTCC
* * *
76776737 CAATTTGAACT-CTTATAGAAATGTTCTCTTAGTTTTACATTTAATCAAATTTTGACTT
131 CAATTTGAA-TGCTTATAGAAATGTCCTCTTAATTTTACATTCAATC-AATTTTGACTT
* * * *
76776795 GGTAGTTTGGCATGGCAG-TCTATTTCGTCCTAATTTGAATGCTTAT-AGAAATGTCCTCTAAAT
1 GGTAGTTTGGAATGACAGTTC-ATTTCGTCCCAATTTGAATGCTTATCAAAAAT-T-CTCTAAAT
* * * * *
76776858 TTTACGTTCAATCAAA-TTTGGCAAGGCAATTTGGCTGGGTAGTTTT-GCATGACAGTTCATTTC
63 TTTACATTCAATCAAATTTTGGCAAGGAAATTTGGCTGGG-AATTTTGGCATAACAGTCCATTTC
* *
76776921 GTCCCGATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTT
127 GTCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTACATTCAATCAATTTT
76776977 AGAAAGGCAG
Statistics
Matches: 155, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
187 14 0.09
188 116 0.75
189 25 0.16
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (187 bp):
GGTAGTTTGGAATGACAGTTCATTTCGTCCCAATTTGAATGCTTATCAAAAATTCTCTAAATTTT
ACATTCAATCAAATTTTGGCAAGGAAATTTGGCTGGGAATTTTGGCATAACAGTCCATTTCGTCC
CAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTACATTCAATCAATTTTGACTT
Found at i:76777249 original size:101 final size:99
Alignment explanation
Indices: 76777085--76778664 Score: 750
Period size: 101 Copynumber: 16.1 Consensus size: 99
76777075 TTGGTTGAGA
* **
76777085 AGTTTGCCATGACAGTCTATTTCGTCC-CAATTTGAATGCTTATGGAAATGTCATCTTAATTTTG
1 AGTTTGGCATGACAGTCTATTTCG-CCTCAATTTGAATGCTTATAAAAATGTC-TCTTAATTTTG
76777149 CATTCAATAAAAATTTGGAAGGGTAGTTTGGCTAGGT
64 CATTCAAT-AAAATTTGGAAGGGTAGTTTGGCTAGGT
* * * * * *
76777186 AGTTTGGCATGATAGCCCAATTCGCCTCAATTTGAACT-CTTATAGAAATGCTCTATTAATTTTG
1 AGTTTGGCATGACAGTCTATTTCGCCTCAATTTGAA-TGCTTATAAAAATG-TCTCTTAATTTTG
* * * *
76777250 CATTTAATAAAATCTTGGCAA-AGTAGTTTGGTTGGGT
64 CATTCAATAAAAT-TTGG-AAGGGTAGTTTGGCTAGGT
* * *
76777287 AGTTTGGGATGACAGTTTATTTCGTCCT-AATTTGAATGCTTATAAAAATGTCTTCTAAATTTTG
1 AGTTTGGCATGACAGTCTATTTCG-CCTCAATTTGAATGCTTATAAAAATGTC-TCTTAATTTTG
* * * * ** *
76777351 CATTCAATCAATTTTGGCAGGATAGTTTGATTGGGT
64 CATTCAATAAAATTTGGAAGGGTAGTTTGGCTAGGT
* * * * *
76777387 AGTTTGACATGACAGTCCATTTCATCC-CAA--TG--T--TTATAAAAATTTCCTCTTATTTTTG
1 AGTTTGGCATGACAGTCTATTTC-GCCTCAATTTGAATGCTTATAAAAATGT-CTCTTAATTTTG
* *** * * *
76777445 CATTCAATCAAATTCTTCTAGAGCAATTTGGC-AGAGT
64 CATTCAATAAAATT-TGGAAGGGTAGTTTGGCTAG-GT
*
76777482 AGTTTGGCATAACAGTCTATTTCGTCC-CAATTTGAACT-CTTATAAAAATGTTCTCTTAATTTT
1 AGTTTGGCATGACAGTCTATTTCG-CCTCAATTTGAA-TGCTTATAAAAATG-TCTCTTAATTTT
* * ** * *
76777545 GCTTTTAATAAAAATTTGTCAGGGCAGTTTGGCTTGGT
63 GCATTCAAT-AAAATTTGGAAGGGTAGTTTGGCTAGGT
** * **
76777583 AGTTTGGCATGACAGTCTATTTCATCTCAATTTGAATGCCTATTGAAATGTCCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCTATTTCGCCTCAATTTGAATGCTTATAAAAATGT-CTCTTAATTTTGC
*
76777648 ATTCAAT-CAA--T-------T--TTT-G-TAGGGT
65 ATTCAATAAAATTTGGAAGGGTAGTTTGGCTA-GGT
* * * * * *
76777670 AGTTTGGCATGACAGTCTACTTCATCC-CAAATTGAATGCTTATAGAAATGTCCTCTTGATTTTT
1 AGTTTGGCATGACAGTCTATTTC-GCCTCAATTTGAATGCTTATAAAAATGT-CTCTTAATTTTG
* * *
76777734 CATTCAATAAAATTTTGGTAGGGCCA-TTTGG-TTGTGT
64 CATTCAATAAAA-TTTGGAAGGG-TAGTTTGGCTAG-GT
* * * ** * * * *
76777771 AGTTTGGCATGACAACCCATTTTTTTTTCC-CAATTTGAATGCTTATAGAAATATCCTTTTATTT
1 AGTTTGGCATGAC-A---GTCTATTTCGCCTCAATTTGAATGCTTATAAAAATGT-CTCTTAATT
* * * * * *
76777835 TTGCATTTAATCAATTTTGGTAGGGCAATTT-GCTAGGGT
61 TTGCATTCAATAAAATTTGGAAGGGTAGTTTGGCTA-GGT
* * * * **
76777874 AGTTTGGAATGACAGTCCATTTCATCCT-AATTTGAATGCTTATATAAATGTCCTCTTAA-AGTG
1 AGTTTGGCATGACAGTCTATTTC-GCCTCAATTTGAATGCTTATAAAAATGT-CTCTTAATTTTG
* * * *
76777937 CATTCAATCAAATTTTGGTAGGGCAATTTGGCTAGGT
64 CATTCAAT-AAAATTTGGAAGGGTAGTTTGGCTAGGT
* * ** * *
76777974 AGTTTGGCATGACAATCCATTTCATCTCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGC
1 AGTTTGGCATGACAGTCTATTTCGCCTCAATTTGAATGCTTATAAAAATGT-CTCTTAATTTTGC
*
76778039 ATTCAAT-CAATTT-------TA-----GC-AGGGT
65 ATTCAATAAAATTTGGAAGGGTAGTTTGGCTA-GGT
* * * * * *
76778061 AGTTTAGCCTAACAGT-TAATTGC-CTTCCAATTTGAATGCTTA-AAGAAATGTATTCTTAATTT
1 AGTTTGGCATGACAGTCT-ATTTCGCCT-CAATTTGAATGCTTATAA-AAATGT-CTCTTAATTT
* * * ** *
76778123 TGCATTCAATCTAATTTTGGTAGGACAGTTTGGCTGGGT
62 TGCATTCAAT-AAAATTTGGAAGGGTAGTTTGGCTAGGT
* * * * *
76778162 AGTTTGGCATTACAGTCCATTTCGTCC-CAATTTGAATGCTTACAGAAATGTCGTCTTAATTTTT
1 AGTTTGGCATGACAGTCTATTTCG-CCTCAATTTGAATGCTTATAAAAATGTC-TCTTAATTTTG
* *
76778226 CATTCAATCAAATTT-------TAG--CGG--A-GT
64 CATTCAATAAAATTTGGAAGGGTAGTTTGGCTAGGT
* * * * * *
76778250 TGTTTGGCATGACAATCCATTTCGTCC-CAATTTAAATGCTAATAGAAATGTTCTCTTAATTTTG
1 AGTTTGGCATGACAGTCTATTTCG-CCTCAATTTGAATGCTTATAAAAATG-TCTCTTAATTTTG
* * * *
76778314 CATTTAAGCAAATATTT-GCAGGGTGGTTTGGC-AGAGT
64 CATTCAA-TAAA-ATTTGGAAGGGTAGTTTGGCTAG-GT
* * * * * **
76778351 AGTTTGACATGACAATCTACTTCATCC-CAAATTGAATGCTTATAGTAATGTCCTCTTAATTTTG
1 AGTTTGGCATGACAGTCTATTTC-GCCTCAATTTGAATGCTTATAAAAATGT-CTCTTAATTTTG
* * * *
76778415 CATTCAATCAAATTTTGGCAGGGCAGTTTGG-TTGTGT
64 CATTCAAT-AAAATTTGGAAGGGTAGTTTGGCTAG-GT
* * * * * * *
76778452 AGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAATGTCATCTTATTTTTGC
1 AGTTTGGCATGACAGTCTATTTCGCCTCAATTTGAATGCTTATAAAAATGTC-TCTTAATTTTGC
* * * ** * * *
76778517 TTTCAATCAATTTTGTCAGAGTAGTTTAGCTGGGT
65 ATTCAATAAAATTTGGAAGGGTAGTTTGGCTAGGT
* * * * * *
76778552 AGTTTGGCTTGATAGTCCATTTTG-TTCCAATTTGAATGCTTATAAAATTGTCCTCTT-ATATTT
1 AGTTTGGCATGACAGTCTATTTCGCCT-CAATTTGAATGCTTATAAAAATGT-CTCTTAAT-TTT
* * * *
76778615 GCATTCAACCAAATTTTGGCAGGGCAGTTTGGCT-GGTT
63 GCATTCAA-TAAAATTTGGAAGGGTAGTTTGGCTAGG-T
76778653 AGTTTGGCATGA
1 AGTTTGGCATGA
76778665 TAATCGATTT
Statistics
Matches: 1153, Mismatches: 218, Indels: 216
0.73 0.14 0.14
Matches are distributed among these distances:
86 4 0.00
87 126 0.11
88 68 0.06
89 8 0.01
90 4 0.00
91 3 0.00
92 1 0.00
93 2 0.00
94 34 0.03
95 36 0.03
96 4 0.00
97 3 0.00
98 4 0.00
99 24 0.02
100 247 0.21
101 487 0.42
102 21 0.02
103 29 0.03
104 44 0.04
105 4 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (99 bp):
AGTTTGGCATGACAGTCTATTTCGCCTCAATTTGAATGCTTATAAAAATGTCTCTTAATTTTGCA
TTCAATAAAATTTGGAAGGGTAGTTTGGCTAGGT
Found at i:76777726 original size:87 final size:88
Alignment explanation
Indices: 76777580--76777756 Score: 266
Period size: 87 Copynumber: 2.0 Consensus size: 88
76777570 AGTTTGGCTT
* * * *
76777580 GGTAGTTTGGCATGACAGTCTATTTCATCTCAATTTGAATGCCTATTGAAATGTCCTCTTAATTT
1 GGTAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCCTATAGAAATGTCCTCTTAATTT
* *
76777645 TGCATTCAAT-CAATTTTTGTAG
66 TGCATTCAATAAAATTTTGGTAG
* *
76777667 GGTAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCTTATAGAAATGTCCTCTTGATTT
1 GGTAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCCTATAGAAATGTCCTCTTAATTT
*
76777732 TTCATTCAATAAAATTTTGGTAG
66 TGCATTCAATAAAATTTTGGTAG
76777755 GG
1 GG
76777757 CCATTTGGTT
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
87 68 0.85
88 12 0.15
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (88 bp):
GGTAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCCTATAGAAATGTCCTCTTAATTT
TGCATTCAATAAAATTTTGGTAG
Found at i:76777745 original size:188 final size:188
Alignment explanation
Indices: 76777475--76778647 Score: 968
Period size: 188 Copynumber: 6.1 Consensus size: 188
76777465 GAGCAATTTG
* * * * *
76777475 GCAGAGTAGTTTGGCATAACAGTCTATTTCGTCCCAATTTGAACT-CTTATAAAAATGTTCTCTT
1 GCAGGGTAGTTTGGCATGACAGTCTATTTCATCCCAATTTGAA-TGCTTATAGAAATGTCCTCTT
* * * * *
76777539 AATTTTGCTTTTAATAAAAATTT-GTCAGGGCAGTTTGGCTTGGTAGTTTGGCATGACAGTCTAT
65 AATTTTGCATTCAATAAAATTTTGGT-AGGGCAGTTTGGCTAGGTAGTTTGGCATGACAATCTAT
* * * *
76777603 TTCATCTCAATTTGAATGCCTATTGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTT
129 TTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTA
* * * *
76777663 GTAGGGTAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCTTATAGAAATGTCCTCTTG
1 GCAGGGTAGTTTGGCATGACAGTCTATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTA
* * *
76777728 ATTTTTCATTCAATAAAATTTTGGTAGGGCCA-TTTGG-TTGTGTAGTTTGGCATGACAACCCAT
66 ATTTTGCATTCAATAAAATTTTGGTAGGG-CAGTTTGGCTAG-GTAGTTTGGCATGACAA-TC--
* ** * * * *
76777791 TTTTTTTTCCCAATTTGAATGCTTATAGAAATATCCTTTTATTTTTGCATTTAATCAATTTTGGT
126 TATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAA-TTT--T
76777856 AGGGCAA
188 ------A
* * * *
76777863 TTTGCTAGGGTAGTTTGGAATGACAGTCCATTTCATCCTAATTTGAATGCTTATATAAATGTCCT
1 ---GC-AGGGTAGTTTGGCATGACAGTCTATTTCATCCCAATTTGAATGCTTATAGAAATGTCCT
** * * *
76777928 CTTAA-AGTGCATTCAATCAAATTTTGGTAGGGCAATTTGGCTAGGTAGTTTGGCATGACAATCC
62 CTTAATTTTGCATTCAATAAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAATCT
* *
76777992 ATTTCATCTCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATCAATTTTA
127 ATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTA
* * * * * * * **
76778054 GCAGGGTAGTTTAGCCTAACAGT-TAATTGCCTTCCAATTTGAATGCTTAAAGAAATGTATTCTT
1 GCAGGGTAGTTTGGCATGACAGTCT-ATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTT
** * * * * *
76778118 AATTTTGCATTCAATCTAATTTTGGTAGGACAGTTTGGCTGGGTAGTTTGGCATTACAGTCCATT
65 AATTTTGCATTCAATAAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAATCTATT
* * * *
76778183 TCGTCCCAATTTGAATGCTTACAGAAATGTCGTCTTAATTTTTCATTCAATCAAATTTTA
130 TCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTTA
* * * * * * *
76778243 GC-GGAGTTGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTCTCTT
1 GCAGG-GTAGTTTGGCATGACAGTCTATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTT
* ** * ** *
76778307 AATTTTGCATTTAAGCAAATATTT-GCAGGGTGGTTTGGC-AGAGTAGTTTGACATGACAATCTA
65 AATTTTGCATTCAATAAAAT-TTTGGTAGGGCAGTTTGGCTAG-GTAGTTTGGCATGACAATCTA
* * *
76778370 CTTCATCCCAAATTGAATGCTTATAGTAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCA
128 TTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATC-AATTTT---A
* ** * * *
76778435 GGGCAGTTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAA
1 --GCA-----G--G-GTAGTTTGGCATGACAGTCTATTTCATCCCAATTTGAATGCTTATAGAAA
* * * * * * * * *
76778500 TGTCATCTTATTTTTGCTTTCAAT-CAATTTT-GTCAGAGTAGTTTAGCTGGGTAGTTTGGCTTG
56 TGTCCTCTTAATTTTGCATTCAATAAAATTTTGGT-AGGGCAGTTTGGCTAGGTAGTTTGGCATG
* * * ** * *
76778563 ATAGTCCATTTTGTTCCAATTTGAATGCTTATA-AAATTGTCCTCTT-ATATTTGCATTCAACCA
120 ACAATCTATTTCATCCCAATTTGAATGCTTATAGAAA-TGTCCTCTTAAT-TTTGCATTCAATC-
*
76778626 AATTTTG
182 AATTTTA
*
76778633 GCAGGGCAGTTTGGC
1 GCAGGGTAGTTTGGC
76778648 TGGTTAGTTT
Statistics
Matches: 793, Mismatches: 146, Indels: 92
0.77 0.14 0.09
Matches are distributed among these distances:
187 54 0.07
188 211 0.27
189 158 0.20
190 3 0.00
191 50 0.06
192 4 0.01
194 3 0.00
196 3 0.00
197 1 0.00
199 3 0.00
200 58 0.07
201 77 0.10
202 63 0.08
203 46 0.06
204 59 0.07
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (188 bp):
GCAGGGTAGTTTGGCATGACAGTCTATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTA
ATTTTGCATTCAATAAAATTTTGGTAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAATCTATTT
CATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAATTTTA
Found at i:76777986 original size:976 final size:967
Alignment explanation
Indices: 76776826--76778647 Score: 2149
Period size: 976 Copynumber: 1.9 Consensus size: 967
76776816 ATTTCGTCCT
* *
76776826 AATTTGAATGCTTATAGAAATGTCCTCTAAATTTTACGTTCAATCAAATTTGGCAAGGCAATTTG
1 AATTTGAATGCTTATAGAAATATCCTCTAAATTTTACATTCAATCAAATTTGGCAAGGCAATTTG
* * * * *
76776891 GCTGGGTAGTTTTGCATGACAGTTCATTTCGTCCCGATTTGAATGCTTATAGAAATGTCCTCTTA
66 GCTGGGTAGTTTGGAATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTA
** * * *
76776956 ATTTTGCATTCAATCAATTTTAGAAAGGCAGTTTGGCTGGGTAGTTTGGCATGACCATCCATTTC
131 ATAGTGCATTCAATCAATTTTAGAAAGGCAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTC
* * * * **
76777021 GTCCCAATTTGAATGCTTATAGAAATGTCCTTTTAATTTTGCATTTAACCAAATTTGGTTGAGAA
196 ATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAACCAAATTTAGCAGAGAA
* * * **
76777086 GTTT-GCCATGACAGTCT-ATTTCGTCCCAATTTGAATGCTTATGGAAATGTCA-TCTTAATTTT
261 GTTTAGCC-TAACAGT-TAATTGCCTCCCAATTTGAATGCTTAAAGAAATGT-ATTCTTAATTTT
** *
76777148 GCATTCAATAAAAATTTGGAAGGGTAGTTTGGCTAGGTAGTTTGGCATGATAGCCCAATTCG-CC
323 GCATTCAATAAAAATTTGGAAGGACAGTTTGGCTAGGTAGTTTGGCATGACAGCCCAATTCGTCC
* *
76777212 TCAATTTGAACT-CTTATAGAAATGCTC-TATTAATTTTGCATTTAATAAAATCTTGGCAAAGTA
388 -CAATTTGAA-TGCTTACAGAAATG-TCGTATTAATTTTGCATTCAATAAAAT-TT-------TA
* * * * ** * * *
76777275 GTTTGGTTGGGTAGTTTGGGATGACAGTTTATTTCGTCCTAATTTGAATGCTTATAAAAATG-TC
442 G---CG--GAGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAAAAATGTTC
* ** * *
76777339 TTCTAAATTTTGCATTCAATC-AAT-TTTGGCAGGATAGTTTGATTGGGTAGTTTGACATGACAG
502 -TCTAAATTTTGCATTCAAGCAAATATTT-GCAGGATAGTTTGACAGAGTAGTTTGACATGACAA
* * *
76777402 TCCATTTCATCCC-AA-TG-T-TTATAAAAATTTCCTCTTATTTTTGCATTCAATCAAATTCTT-
565 TCCACTTCATCCCAAATTGATCTTATAAAAATGTCCTCTTAATTTTGCATTCAATCAAATT-TTG
76777462 CTAGAGCAATTTGGCAGAGTAGTTTGGCATAACAGTCTATTTCGTCCCAATTTGAA-CTCTTATA
629 C-AGAGCAATTTGGCAGAGTAGTTTGGCATAACAGTCTATTTCGTCCCAATTTGAATC-CTTATA
* * * *
76777526 AAAATGTTC-TCTTAATTTTGCTTTTAATAAAAATTTGTCAGGGCAGTTTGGCTTGGTAGTTTGG
692 AAAATG-TCATCTTAATTTTGCTTTCAAT-AAAATTTGTCAGAGCAGTTTAGCTGGGTAGTTTGG
* *
76777590 CATGACAGTCTATTTCA-TCTCAATTTGAATGCCTATTGAAA-TGTCCTCTTA-ATTTTGCATTC
755 CATGACAGTCCATTTCATTC-CAATTTGAATGCCTA-TAAAATTGTCCTCTTATA-TTTGCATTC
* * * *
76777652 AATC-AATTTTTGTAGGGTAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCTTATAGA
817 AACCAAATTTTGGCAGGGCAGTTTGGCATGACAGTCTACTTCATCCCAAATTGAATGCTTATAGA
76777716 AATGTCCTCTTGATTTTTCATTCAATAAAATTTTGGTAGGGCCATTTGGTTGTGTAGTTTGGCAT
882 AATGTCCTCTTGATTTTTCATTCAATAAAATTTTGGTAGGGCCATTTGGTTGTGTAGTTTGGCAT
76777781 GACAACCCATTTTTTTTTCCC
947 GACAACCCATTTTTTTTTCCC
* * * * * * * *
76777802 AATTTGAATGCTTATAGAAATATCCTTTTATTTTTGCATTTAATCAATTTTGGTAGGGCAATTT-
1 AATTTGAATGCTTATAGAAATATCCTCTAAATTTTACATTCAATCAAATTTGGCAAGGCAATTTG
* *
76777866 GCTAGGGTAGTTTGGAATGACAGTCCATTTCATCCTAATTTGAATGCTTATATAAATGTCCTCTT
66 GCT-GGGTAGTTTGGAATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTT
* * *
76777931 AA-AGTGCATTCAATCAAATTTTGGTAGGGCAATTTGGCTAGGTAGTTTGGCATGACAATCCATT
130 AATAGTGCATTCAATC-AATTTTAGAAAGGCAATTTGGCTAGGTAGTTTGGCATGACAATCCATT
* * * * *
76777995 TCATCTCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATCAATTTTAGCAGGG
194 TCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAACCAAATTTAGCAGAG
* *
76778060 TAGTTTAGCCTAACAGTTAATTGCCTTCCAATTTGAATGCTTAAAGAAATGTATTCTTAATTTTG
259 AAGTTTAGCCTAACAGTTAATTGCCTCCCAATTTGAATGCTTAAAGAAATGTATTCTTAATTTTG
** * * * * * *
76778125 CATTCAATCTAATTTTGGTAGGACAGTTTGGCTGGGTAGTTTGGCATTACAGTCCATTTCGTCCC
324 CATTCAATAAAAATTTGGAAGGACAGTTTGGCTAGGTAGTTTGGCATGACAGCCCAATTCGTCCC
* * * *
76778190 AATTTGAATGCTTACAGAAATGTCGTCTTAATTTTTCATTCAATCAAATTTTAGCGGAGTTGTTT
389 AATTTGAATGCTTACAGAAATGTCGTATTAATTTTGCATTCAATAAAATTTTAGCGGAGTAGTTT
* * *
76778255 GGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTCTCTTAATTTTGCATTTA
454 GGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAAAAATGTTCTCTAAATTTTGCATTCA
* * * *
76778320 AGCAAATATTTGCAGGGTGGTTTGGCAGAGTAGTTTGACATGACAATCTACTTCATCCCAAATTG
519 AGCAAATATTTGCAGGATAGTTTGACAGAGTAGTTTGACATGACAATCCACTTCATCCCAAATTG
** * * ** *
76778385 AATGCTTATAGTAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGGTTGT
584 -AT-CTTATAAAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT-GCAGAGCAATTTGGCAGA
* * * * * *
76778450 GTAGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAATGTCATCTTATTTTT
646 GTAGTTTGGCATAACAGTCTATTTCGTCCCAATTTGAATCCTTATAAAAATGTCATCTTAATTTT
* * * * * **
76778515 GCTTTCAATCAATTTTGTCAGAGTAGTTTAGCTGGGTAGTTTGGCTTGATAGTCCATTTTGTTCC
711 GCTTTCAATAAAATTTGTCAGAGCAGTTTAGCTGGGTAGTTTGGCATGACAGTCCATTTCATTCC
*
76778580 AATTTGAATGCTTATAAAATTGTCCTCTTATATTTGCATTCAACCAAATTTTGGCAGGGCAGTTT
776 AATTTGAATGCCTATAAAATTGTCCTCTTATATTTGCATTCAACCAAATTTTGGCAGGGCAGTTT
76778645 GGC
841 GGC
76778648 TGGTTAGTTT
Statistics
Matches: 706, Mismatches: 115, Indels: 56
0.81 0.13 0.06
Matches are distributed among these distances:
963 61 0.09
964 44 0.06
965 6 0.01
966 2 0.00
968 8 0.01
969 81 0.11
970 130 0.18
971 2 0.00
975 21 0.03
976 346 0.49
977 5 0.01
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (967 bp):
AATTTGAATGCTTATAGAAATATCCTCTAAATTTTACATTCAATCAAATTTGGCAAGGCAATTTG
GCTGGGTAGTTTGGAATGACAGTCCATTTCATCCCAATTTGAATGCTTATAGAAATGTCCTCTTA
ATAGTGCATTCAATCAATTTTAGAAAGGCAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTC
ATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAACCAAATTTAGCAGAGAA
GTTTAGCCTAACAGTTAATTGCCTCCCAATTTGAATGCTTAAAGAAATGTATTCTTAATTTTGCA
TTCAATAAAAATTTGGAAGGACAGTTTGGCTAGGTAGTTTGGCATGACAGCCCAATTCGTCCCAA
TTTGAATGCTTACAGAAATGTCGTATTAATTTTGCATTCAATAAAATTTTAGCGGAGTAGTTTGG
CATGACAATCCATTTCGTCCCAATTTAAATGCTAATAAAAATGTTCTCTAAATTTTGCATTCAAG
CAAATATTTGCAGGATAGTTTGACAGAGTAGTTTGACATGACAATCCACTTCATCCCAAATTGAT
CTTATAAAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGCAGAGCAATTTGGCAGAGTAGT
TTGGCATAACAGTCTATTTCGTCCCAATTTGAATCCTTATAAAAATGTCATCTTAATTTTGCTTT
CAATAAAATTTGTCAGAGCAGTTTAGCTGGGTAGTTTGGCATGACAGTCCATTTCATTCCAATTT
GAATGCCTATAAAATTGTCCTCTTATATTTGCATTCAACCAAATTTTGGCAGGGCAGTTTGGCAT
GACAGTCTACTTCATCCCAAATTGAATGCTTATAGAAATGTCCTCTTGATTTTTCATTCAATAAA
ATTTTGGTAGGGCCATTTGGTTGTGTAGTTTGGCATGACAACCCATTTTTTTTTCCC
Found at i:76778030 original size:391 final size:385
Alignment explanation
Indices: 76776538--76778445 Score: 1346
Period size: 391 Copynumber: 4.9 Consensus size: 385
76776528 ATATTGTACC
* ** * * * *
76776538 AATTCGAATGCTTATAGAAATGT-CTTCTTAATTTCACATTCGAT-CAATTTTTGCAGGGA-AGT
1 AATT-GAATGCTTAAAGAAATGTAC-TCTTAATTTTGCATTCAATAAAATTTTGGTA-GGACAGT
* * *** * * *
76776600 TTGGCTAGGTAGTTTGGAATGACAGTTCATTTCTTCCCAATTTGAATGTTTATCA-AAA-AT-TT
63 TTGGCTGGGTAGTTTGGCATGACAACCCATTTCGTCCCAATTTGAATGCTTAT-AGAAATATCCT
* * * * * * * *
76776662 TCTTAATTTTGCATTCAATCAAATTTTGGCAGGGAAATTTGGCTGGGAATTTTGGCATAACTGTC
127 T-TTATTTTTGCATTCAATC-AATTTT--TAGGGCAATTT-GCTAGGTAGTTTGGCATGACAGTC
* * * *
76776727 CATTTTGTCCCAATTTGAACT-CTTATAGAAATGTTCTCTTAGTTTTACATTTAATCAAATTTTG
187 CATTTCGTCCCAATTTGAA-TGCTTATAAAAATGTTCTCTTAATTTTGCATTTAATCAAATTTTG
* * *
76776791 -A---C----T---T-GGTAGTTTGGCATGGCAGTCTATTTCGTC-CTAATTTGAATGCTTATAG
251 TAGGGCAGTTTGGCTAGGTAGTTTGGCATGACAATCTATTTCATCTC-AATTTGAATGCTTATAG
* * * * *
76776843 AAATGTCCTCTAAATTTTACGTTCAATCAAATTTGGCAAGGCAATTTGGCTGGGTAGTTTTGCAT
315 AAATGTCCTCTTAATTTTGCATTCAATC-AATTT---TA-GC-A-------GGGTAGTTTGGCAT
* * * * *
76776908 GACAGTTCATTTCGTCCCG
367 AACAGTTAATTGCATCCCA
* * * * **
76776927 ATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAAT-CAATTTTAGAAAGG-CAGTTT
1 AATTGAATGCTTAAAGAAATGTACTCTTAATTTTGCATTCAATAAAATTTT-GGTAGGACAGTTT
* * *
76776990 GGCTGGGTAGTTTGGCATGACCATCCATTTCGTCCCAATTTGAATGCTTATAGAAATGTCCTTTT
65 GGCTGGGTAGTTTGGCATGACAACCCATTTCGTCCCAATTTGAATGCTTATAGAAATATCCTTTT
* * * * * * *
76777055 AATTTTGCATTTAACCAA-ATTT--GG----TTG--A-GAAGTTTGCCATGACAGTCTATTTCGT
130 ATTTTTGCATTCAATCAATTTTTAGGGCAATTTGCTAGGTAGTTTGGCATGACAGTCCATTTCGT
** * * * * *
76777110 CCCAATTTGAATGCTTATGGAAATG-TCATCTTAATTTTGCATTCAATAAAAATTTGGAAGGGTA
195 CCCAATTTGAATGCTTATAAAAATGTTC-TCTTAATTTTGCATTTAAT-CAAATTTTGTAGGGCA
* ** * * **
76777174 GTTTGGCTAGGTAGTTTGGCATGATAGCCCAATTCGCCTCAATTTGAACT-CTTATAGAAATG-C
258 GTTTGGCTAGGTAGTTTGGCATGACAATCTATTTCATCTCAATTTGAA-TGCTTATAGAAATGTC
* * * ** * *
76777237 TCTATTAATTTTGCATTTAATAAAATCTTGGCAAAGTAGTTTGGTTGGGTAGTTTGGGATGACAG
322 -CTCTTAATTTTGCA--T--T-CAA---T--C-AA-T--TTTAGCAGGGTAGTTTGGCATAACAG
* * * *
76777302 TTTATTTCGTCCTA
372 TTAATTGCATCCCA
* * * * *
76777316 ATTTGAATGCTTATAA-AAATGT-CTTCTAAATTTTGCATTCAAT-CAATTTTGGCAGGATAGTT
1 AATTGAATGCTTA-AAGAAATGTAC-TCTTAATTTTGCATTCAATAAAATTTTGGTAGGACAGTT
** * ** * * * *
76777378 TGATTGGGTAGTTTGACATGACAGTCCATTTCATCCCAA--TG--T--TTATAAAAATTTCCTCT
64 TGGCTGGGTAGTTTGGCATGACAACCCATTTCGTCCCAATTTGAATGCTTATAGAAATATCCTTT
* * *
76777437 TATTTTTGCATTCAATCAAATTCTTCTAGAGCAATTTGGC-AGAGTAGTTTGGCATAACAGTCTA
129 TATTTTTGCATTCAATC-AATT-TT-TAGGGCAATTT-GCTAG-GTAGTTTGGCATGACAGTCCA
* * *
76777501 TTTCGTCCCAATTTGAACT-CTTATAAAAATGTTCTCTTAATTTTGCTTTTAATAAAAATTTGTC
189 TTTCGTCCCAATTTGAA-TGCTTATAAAAATGTTCTCTTAATTTTGCATTTAATCAAATTTTGT-
* * * *
76777565 AGGGCAGTTTGGCTTGGTAGTTTGGCATGACAGTCTATTTCATCTCAATTTGAATGCCTATTGAA
252 AGGGCAGTTTGGCTAGGTAGTTTGGCATGACAATCTATTTCATCTCAATTTGAATGCTTATAGAA
* * * *
76777630 ATGTCCTCTTAATTTTGCATTCAATCAATTTTTGTAGGGTAGTTTGGCATGACAGTCTACTT-CA
317 ATGTCCTCTTAATTTTGCATTCAATCAATTTTAGCAGGGTAGTTTGGCATAACAGT-TAATTGCA
76777694 TCCCA
381 TCCCA
* * * * *
76777699 AATTGAATGCTTATAGAAATGTCCTCTTGATTTTTCATTCAATAAAATTTTGGTAGGGCCA-TTT
1 AATTGAATGCTTAAAGAAATGTACTCTTAATTTTGCATTCAATAAAATTTTGGTA-GGACAGTTT
* * **
76777763 GGTTGTGTAGTTTGGCATGACAACCCATTTTTTTTTCCCAATTTGAATGCTTATAGAAATATCCT
65 GGCTGGGTAGTTTGGCATGACAACCCA---TTTCGTCCCAATTTGAATGCTTATAGAAATATCCT
* *
76777828 TTTATTTTTGCATTTAATCAATTTTGGTAGGGCAATTTGCTAGGGTAGTTTGGAATGACAGTCCA
127 TTTATTTTTGCATTCAATCAATTTT--TAGGGCAATTTGCTA-GGTAGTTTGGCATGACAGTCCA
* * * * ** *
76777893 TTTCATCCTAATTTGAATGCTTATATAAATGTCCTCTTAA-AGTGCATTCAATCAAATTTTGGTA
189 TTTCGTCCCAATTTGAATGCTTATAAAAATGTTCTCTTAATTTTGCATTTAATCAAATTTT-GTA
* *
76777957 GGGCAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCATCTCAATTTGAATGCTTATAGAAA
253 GGGCAGTTTGGCTAGGTAGTTTGGCATGACAATCTATTTCATCTCAATTTGAATGCTTATAGAAA
* * * * *
76778022 TTTCCTCTTAATTTTGCATTCAATCAATTTTAGCAGGGTAGTTTAGCCTAACAGTTAATTGCCTT
318 TGTCCTCTTAATTTTGCATTCAATCAATTTTAGCAGGGTAGTTTGGCATAACAGTTAATTGCATC
76778087 CCA
383 CCA
* * **
76778090 ATTTGAATGCTTAAAGAAATGTATTCTTAATTTTGCATTCAATCTAATTTTGGTAGGACAGTTTG
1 AATTGAATGCTTAAAGAAATGTACTCTTAATTTTGCATTCAATAAAATTTTGGTAGGACAGTTTG
* ** * * * *
76778155 GCTGGGTAGTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCGTCTTA
66 GCTGGGTAGTTTGGCATGACAACCCATTTCGTCCCAATTTGAATGCTTATAGAAATATCCT-TTT
* *
76778220 ATTTTT-CATTCAATCAAATTTTAGCGG--A---G-T---T-GTTTGGCATGACAATCCATTTCG
130 ATTTTTGCATTCAATCAATTTTTAG-GGCAATTTGCTAGGTAGTTTGGCATGACAGTCCATTTCG
* * * * * **
76778274 TCCCAATTTAAATGCTAATAGAAATGTTCTCTTAATTTTGCATTTAAGCAAATATTTGCAGGGTG
194 TCCCAATTTGAATGCTTATAAAAATGTTCTCTTAATTTTGCATTTAATCAAAT-TTTGTAGGGCA
* * * * *
76778339 GTTTGGC-AGAGTAGTTTGACATGACAATCTACTTCATCCCAAATTGAATGCTTATAGTAATGTC
258 GTTTGGCTAG-GTAGTTTGGCATGACAATCTATTTCATCTCAATTTGAATGCTTATAGAAATGTC
* *
76778403 CTCTTAATTTTGCATTCAATCAAATTTTGGCAGGGCAGTTTGG
322 CTCTTAATTTTGCATTCAATC-AATTTTAGCAGGGTAGTTTGG
76778446 TTGTGTAGTT
Statistics
Matches: 1233, Mismatches: 200, Indels: 183
0.76 0.12 0.11
Matches are distributed among these distances:
374 3 0.00
375 59 0.05
376 59 0.05
377 94 0.08
378 22 0.02
379 2 0.00
381 1 0.00
382 2 0.00
383 93 0.08
384 41 0.03
385 6 0.00
386 7 0.01
387 20 0.02
388 198 0.16
389 145 0.12
390 12 0.01
391 206 0.17
392 72 0.06
393 36 0.03
394 1 0.00
395 2 0.00
396 9 0.01
397 132 0.11
398 8 0.01
399 1 0.00
401 2 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (385 bp):
AATTGAATGCTTAAAGAAATGTACTCTTAATTTTGCATTCAATAAAATTTTGGTAGGACAGTTTG
GCTGGGTAGTTTGGCATGACAACCCATTTCGTCCCAATTTGAATGCTTATAGAAATATCCTTTTA
TTTTTGCATTCAATCAATTTTTAGGGCAATTTGCTAGGTAGTTTGGCATGACAGTCCATTTCGTC
CCAATTTGAATGCTTATAAAAATGTTCTCTTAATTTTGCATTTAATCAAATTTTGTAGGGCAGTT
TGGCTAGGTAGTTTGGCATGACAATCTATTTCATCTCAATTTGAATGCTTATAGAAATGTCCTCT
TAATTTTGCATTCAATCAATTTTAGCAGGGTAGTTTGGCATAACAGTTAATTGCATCCCA
Found at i:76778312 original size:88 final size:88
Alignment explanation
Indices: 76778163--76778326 Score: 240
Period size: 88 Copynumber: 1.9 Consensus size: 88
76778153 TGGCTGGGTA
* * * * *
76778163 GTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCGTCTTAATTTTTCA
1 GTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATGTCGTCTTAATTTTGCA
*
76778228 TTCAATCAAATTTTAGCGGAGTT
66 TTCAAGCAAATTTTAGCGGAGTT
*
76778251 GTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTC-TCTTAATTTTGC
1 GTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATG-TCGTCTTAATTTTGC
*
76778315 ATTTAAGCAAAT
65 ATTCAAGCAAAT
76778327 ATTTGCAGGG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
88 65 0.97
89 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (88 bp):
GTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATGTCGTCTTAATTTTGCA
TTCAAGCAAATTTTAGCGGAGTT
Found at i:76778343 original size:88 final size:87
Alignment explanation
Indices: 76778158--76778346 Score: 238
Period size: 88 Copynumber: 2.1 Consensus size: 87
76778148 CAGTTTGGCT
* * * *
76778158 GGGTAGTTTGGCATTACAGTCCATTTCGTCCCAATTTGAATGCTTACAGAAATGTCGTCTTAATT
1 GGGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATGTCGTCTTAATT
* *
76778223 TTTCATTCAATCAAATTTTAGC
66 TTGCATTCAAGCAAATTTTAGC
* *
76778245 GGAGTTGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTC-TCTTAA
1 GG-GTAGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATG-TCGTCTTAA
*
76778309 TTTTGCATTTAAGCAAATATTT-GC
64 TTTTGCATTCAAGCAAAT-TTTAGC
*
76778333 AGGGTGGTTTGGCA
1 -GGGTAGTTTGGCA
76778347 GAGTAGTTTG
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
87 2 0.02
88 79 0.90
89 7 0.08
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (87 bp):
GGGTAGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAACAGAAATGTCGTCTTAATT
TTGCATTCAAGCAAATTTTAGC
Found at i:76778388 original size:189 final size:188
Alignment explanation
Indices: 76777869--76778647 Score: 680
Period size: 189 Copynumber: 4.1 Consensus size: 188
76777859 GCAATTTGCT
* * * * *
76777869 AGGGTAGTTTGGAATGACAGTCCATTTCATCCTAATTTGAATGCTTATATAAATGTCCTCTTAA-
1 AGGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTAATAGAAATGTTCTCTTAAT
** *
76777933 AGTGCATTCAATCAAATTTTGGTAGGGCAATTTGGCTAGGTAGTTTGGCATGACAATCCATTTCA
66 TTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGC-AGGTAGTTTGGCATGACAATCCATTTCA
* *
76777998 TCTCAATTTGAATGCTTATAGAAATTTCCTCTTAATTTTGCATTCAATC-AATTTTAGC
130 TCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTAGC
* * * ** * * *
76778056 AGGGTAGTTTAGCCTAACAGTTAATTGCCTTCCAATTTGAATGCTTAA-AGAAATGTAT-TCTTA
1 AGGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGC-TAATAGAAATGT-TCTCTTA
* * * * *
76778119 ATTTTGCATTCAATCTAATTTTGGTAGGACAGTTTGGCTGGGTAGTTTGGCATTACAGTCCATTT
64 ATTTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGC-AGGTAGTTTGGCATGACAATCCATTT
* * * *
76778184 CGTCCCAATTTGAATGCTTACAGAAATGTCGTCTTAATTTTTCATTCAATCAAATTTTAGC
128 CATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTAGC
* * * *
76778245 -GGAGTTGTTTGGCATGACAATCCATTTCGTCCCAATTTAAATGCTAATAGAAATGTTCTCTTAA
1 AGG-GTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTAATAGAAATGTTCTCTTAA
* * * ** * * *
76778309 TTTTGCATTTAAGCAAATATTT-GCAGGGTGGTTTGGCAGAGTAGTTTGACATGACAATCTACTT
65 TTTTGCATTCAATCAAAT-TTTGGTAGGGCAGTTTGGCAG-GTAGTTTGGCATGACAATCCATTT
* *
76778373 CATCCCAAATTGAATGCTTATAGTAATGTCCTCTTAATTTTGCATTCAATCAAATTTTGGCAGGG
128 CATCCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTT---A--G
76778438 C
188 C
** ** * * * *
76778439 AGTTTGGTTGTGTAGTTTGGCATGACAGTTTATTTTGTCGCAATTTGAATCCTTATATAAATG-T
1 A-----G--G-GTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTAATAGAAATGTT
* * * * * * * *
76778503 CATCTTATTTTTGCTTTCAATC-AATTTT-GTCAGAGTAGTTTAGCTGGGTAGTTTGGCTTGATA
58 C-TCTTAATTTTGCATTCAATCAAATTTTGGT-AGGGCAGTTTGGC-AGGTAGTTTGGCATGACA
* ** * *
76778566 GTCCATTTTGTTCCAATTTGAATGCTTATA-AAATTGTCCTCTT-ATATTTGCATTCAACCAAAT
120 ATCCATTTCATCCCAATTTGAATGCTTATAGAAA-TGTCCTCTTAAT-TTTGCATTCAATCAAAT
*
76778629 TTTGGC
183 TTTAGC
*
76778635 AGGGCAGTTTGGC
1 AGGGTAGTTTGGC
76778648 TGGTTAGTTT
Statistics
Matches: 474, Mismatches: 91, Indels: 53
0.77 0.15 0.09
Matches are distributed among these distances:
187 47 0.10
188 118 0.25
189 151 0.32
190 3 0.01
191 1 0.00
192 1 0.00
194 2 0.00
196 3 0.01
200 9 0.02
201 79 0.17
202 60 0.13
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (188 bp):
AGGGTAGTTTGGCATGACAGTCCATTTCATCCCAATTTGAATGCTAATAGAAATGTTCTCTTAAT
TTTGCATTCAATCAAATTTTGGTAGGGCAGTTTGGCAGGTAGTTTGGCATGACAATCCATTTCAT
CCCAATTTGAATGCTTATAGAAATGTCCTCTTAATTTTGCATTCAATCAAATTTTAGC
Found at i:76793561 original size:46 final size:46
Alignment explanation
Indices: 76793494--76793666 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
76793484 TAACCCGCCT
* **
76793494 ATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCC
* *
76793540 ATAAGCAAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCC
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCC
* * * * *
76793586 ATAAGTGAACTCGGACTTAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCATCC
*
76793635 -TCA-CGAACTCGGACTCAACTCAACGAGCTCGG
1 ATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
76793667 AACTCAAATA
Statistics
Matches: 105, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
46 69 0.66
47 25 0.24
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
ATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCC
Found at i:76794013 original size:19 final size:20
Alignment explanation
Indices: 76793976--76794020 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
76793966 CGAGCCTATT
76793976 CCTCGTAAACTTTATTTTTC
1 CCTCGTAAACTTTATTTTTC
76793996 CCTCGTAAACTTTATTTTTC
1 CCTCGTAAACTTTATTTTTC
*
76794016 TCTCG
1 CCTCG
76794021 ATCACGACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.18, C:0.27, G:0.07, T:0.49
Consensus pattern (20 bp):
CCTCGTAAACTTTATTTTTC
Found at i:76798020 original size:6 final size:6
Alignment explanation
Indices: 76798009--76798073 Score: 57
Period size: 6 Copynumber: 10.8 Consensus size: 6
76797999 AGGCAACCTA
*
76798009 ATTTTT ATTTTT ATTTTT ATTTATT -TTATTT -TTCTTA ATTTTT A-TTTT
1 ATTTTT ATTTTT ATTTTT ATTT-TT ATT-TTT ATT-TTT ATTTTT ATTTTT
76798057 ATTATTT A-TTTT ATTTT
1 ATT-TTT ATTTTT ATTTT
76798074 ATTATTACTT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
5 9 0.18
6 32 0.64
7 9 0.18
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (6 bp):
ATTTTT
Done.