Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 268 of 427
Found at i:77076326 original size:95 final size:94
Alignment explanation
Indices: 77076087--77076391 Score: 279
Period size: 94 Copynumber: 3.3 Consensus size: 94
77076077 ATATGTATGC
* * *
77076087 TAGTGTAAGACATGTCTAGAACATGCATCGGCCACATTATA-AGAGCCAGTGTAAGACCATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATC-GCAACATTA-AGAGAGCCAGTGTAAGACCATGTCT
* * * *
77076151 GGGACA-TGGCGTCGGTATTGAGACGAGAGC
64 GGGACATTAGCATCGGCATTGAGACGAGAGA
* * * *
77076181 TAGTGTATGACATGTCTGGGACATGCATCGGCTACATTATGAGAGGCAGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATC-GCAACATTAAGAGAGCCAGTGTAAGACCATGTCTG
**
77076246 GGACATTATTATCGGCATTGAGACGAGAGA
65 GGACATTAGCATCGGCATTGAGACGAGAGA
* ** *
77076276 TAGTGTAAGACATGTCTGGGACATGCA-C-CAACCTTAAGATGTAAGCCAGTGTATCA-CATGTA
1 TAGTGTAAGACATGTCTGGGACATGCATCGCAACATTAAGA-G--AGCCAGTGTAAGACCATGTC
* * **
77076338 TGGGACA-T-GCATCGGC-TATGAGATGTGTCA
63 TGGGACATTAGCATCGGCAT-TGAGACGAGAGA
77076368 -A-TGTAAGACCATGTCTGGGACATG
1 TAGTGTAAGA-CATGTCTGGGACATG
77076392 GCACCGGCAC
Statistics
Matches: 178, Mismatches: 26, Indels: 17
0.81 0.12 0.08
Matches are distributed among these distances:
90 7 0.04
91 17 0.10
92 22 0.12
93 2 0.01
94 76 0.43
95 54 0.30
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGCAACATTAAGAGAGCCAGTGTAAGACCATGTCTGG
GACATTAGCATCGGCATTGAGACGAGAGA
Found at i:77082817 original size:71 final size:71
Alignment explanation
Indices: 77082733--77082896 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77082723 CGATTTGTCT
77082733 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77082798 CTTTCA
66 CTTTCA
77082804 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77082869 CTTTCA
66 CTTTCA
77082875 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77082897 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77082934 original size:71 final size:70
Alignment explanation
Indices: 77082733--77082930 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77082723 CGATTTGTCT
* * * *
77082733 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77082798 CTTTCA
65 CTTTCA
* * * *
77082804 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77082869 CTTTCA
65 CTTTCA
* *
77082875 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77082931 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77090393 original size:71 final size:71
Alignment explanation
Indices: 77090309--77090472 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
77090299 CGATTTGTCT
77090309 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77090374 CTTTCA
66 CTTTCA
77090380 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
77090445 CTTTCA
66 CTTTCA
77090451 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
77090473 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:77090510 original size:71 final size:70
Alignment explanation
Indices: 77090309--77090506 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
77090299 CGATTTGTCT
* * * *
77090309 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77090374 CTTTCA
65 CTTTCA
* * * *
77090380 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
77090445 CTTTCA
65 CTTTCA
* *
77090451 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
77090507 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:77097331 original size:21 final size:20
Alignment explanation
Indices: 77097307--77097346 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
77097297 GTTATAATGA
77097307 CCACACGGGGGTGTTGCCCTT
1 CCACACGGGGGTG-TGCCCTT
*
77097328 CCACACGGGTGTGTGCCCT
1 CCACACGGGGGTGTGCCCT
77097347 GTTTCAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.35, G:0.33, T:0.23
Consensus pattern (20 bp):
CCACACGGGGGTGTGCCCTT
Found at i:77103995 original size:27 final size:28
Alignment explanation
Indices: 77103939--77104008 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
77103929 AAATTTGTAC
77103939 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
77103967 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
77103994 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77104009 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:77104019 original size:27 final size:27
Alignment explanation
Indices: 77103939--77104020 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77103929 AAATTTGTAC
* *
77103939 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
77103967 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
77103994 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
77104021 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:77111792 original size:27 final size:28
Alignment explanation
Indices: 77111736--77111805 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
77111726 AAATTTGTAC
77111736 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
77111764 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
77111791 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77111806 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:77111816 original size:27 final size:27
Alignment explanation
Indices: 77111736--77111817 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77111726 AAATTTGTAC
* *
77111736 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
77111764 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
77111791 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
77111818 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:77113667 original size:38 final size:38
Alignment explanation
Indices: 77113606--77113725 Score: 147
Period size: 38 Copynumber: 3.1 Consensus size: 38
77113596 ATTTGATGTG
* *
77113606 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTATGTGCTGGAATTA
77113646 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTAT-GTGCTGG-AATTA
*
77113684 TATCCGGGTTAAATCCCGCAGGCCTA-GTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGG-CTATGTGCTGGAATTA
77113722 TATC
1 TATC
77113726 TGAGTTTAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
37 2 0.03
38 53 0.74
39 9 0.12
40 8 0.11
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTATGTGCTGGAATTA
Found at i:77113705 original size:76 final size:80
Alignment explanation
Indices: 77113606--77113754 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 80
77113596 ATTTGATGTG
77113606 TATCCGGGCTTAAAGACCCGCAGG-CTATATGCTGGAATTATATCCG-GGTTAAA-TCCCGCAGG
1 TATCCGGGCTTAAAGACCCGCAGGCCTA-ATGCTGGAATTATATCCGAGGTTAAAGTCCCGCAGG
77113668 CTTCGTGCTGGTAATA
65 CTTCGTGCTGGTAATA
* * * * * *
77113684 TATCCGGG-TTAAA-TCCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCCCGTAGGC
1 TATCCGGGCTTAAAGACCCGCAGGCCTAATGCTGGAATTATATCCGAGGTTAAAGTCCCGCAGGC
77113747 TTCGTGCT
66 TTCGTGCT
77113755 AGTGTTATGT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
76 23 0.37
77 14 0.23
78 25 0.40
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.30
Consensus pattern (80 bp):
TATCCGGGCTTAAAGACCCGCAGGCCTAATGCTGGAATTATATCCGAGGTTAAAGTCCCGCAGGC
TTCGTGCTGGTAATA
Found at i:77115374 original size:43 final size:43
Alignment explanation
Indices: 77115326--77115590 Score: 350
Period size: 43 Copynumber: 6.2 Consensus size: 43
77115316 GCATGAAACT
* * *
77115326 CGGTGATGTGTATTCAGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGC
* * * *
77115369 CGGTGATGAGTATTTGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGC
* *
77115412 CGGTGATGTGTATTCTGGCCTTTGTGCCTAGCAGGCTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGC
* ** *
77115455 CGGTGATGAGTATTCGGGCCTTCGTGCCTATTAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGC
* * **
77115498 CAGTGATGTGTATTCTGGCCTTCGTGCCTATTAGGCTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGC
* * *
77115541 CAGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGC
77115584 CGGTGAT
1 CGGTGAT
77115591 TCGAGCAAGG
Statistics
Matches: 199, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 199 1.00
ACGTcount: A:0.13, C:0.22, G:0.31, T:0.34
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGC
Found at i:77115474 original size:86 final size:86
Alignment explanation
Indices: 77115326--77115590 Score: 395
Period size: 86 Copynumber: 3.1 Consensus size: 86
77115316 GCATGAAACT
* * *
77115326 CGGTGATGTGTATTCAGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGAGTATTTGGGCCTT
1 CGGTGATGTGTATTCTGGCCTTTGTGCCTAGCAGGCTTCATGCCGGTGATGAGTATTCGGGCCTT
*
77115391 TGTGCCTAGCAGGCTTCGTGC
66 CGTGCCTAGCAGGCTTCGTGC
77115412 CGGTGATGTGTATTCTGGCCTTTGTGCCTAGCAGGCTTCATGCCGGTGATGAGTATTCGGGCCTT
1 CGGTGATGTGTATTCTGGCCTTTGTGCCTAGCAGGCTTCATGCCGGTGATGAGTATTCGGGCCTT
**
77115477 CGTGCCTATTAGGCTTCGTGC
66 CGTGCCTAGCAGGCTTCGTGC
* * ** * * *
77115498 CAGTGATGTGTATTCTGGCCTTCGTGCCTATTAGGCTTCATGCCAGTGATGTGTATTCGGGTCTT
1 CGGTGATGTGTATTCTGGCCTTTGTGCCTAGCAGGCTTCATGCCGGTGATGAGTATTCGGGCCTT
**
77115563 CGTGCCTAGCAGGCTTAATGC
66 CGTGCCTAGCAGGCTTCGTGC
77115584 CGGTGAT
1 CGGTGAT
77115591 TCGAGCAAGG
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 161 1.00
ACGTcount: A:0.13, C:0.22, G:0.31, T:0.34
Consensus pattern (86 bp):
CGGTGATGTGTATTCTGGCCTTTGTGCCTAGCAGGCTTCATGCCGGTGATGAGTATTCGGGCCTT
CGTGCCTAGCAGGCTTCGTGC
Found at i:77115815 original size:58 final size:58
Alignment explanation
Indices: 77115744--77115909 Score: 271
Period size: 58 Copynumber: 2.9 Consensus size: 58
77115734 CGAATGATTA
* *
77115744 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAGTT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
*
77115802 GAGGCACTTTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* * *
77115860 GAGGCACTGTGTGTGCGAGTT-CTTCAATCGAGCACTATGTGTGCGAGATC
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATC
77115910 AGTCAGTGGA
Statistics
Matches: 101, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
57 27 0.27
58 74 0.73
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:77115847 original size:29 final size:28
Alignment explanation
Indices: 77115747--77115905 Score: 115
Period size: 29 Copynumber: 5.5 Consensus size: 28
77115737 ATGATTAGAG
* * *
77115747 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAATCGA
** * *
77115776 GCACTATGTGTGCGAGA-TCGGTAGTTGA
1 GCACTATGTGTGCGA-ATTCTTTAATCGA
* *
77115804 GGCACTTTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAATCGA
** *
77115834 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAATCGA
* * *
77115862 GGCACTGTGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAATTCTTTAATCGA
77115891 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
77115906 GATCAGTCAG
Statistics
Matches: 98, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
28 26 0.27
29 65 0.66
30 7 0.07
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAATCGA
Found at i:77115923 original size:28 final size:27
Alignment explanation
Indices: 77115835--77115930 Score: 77
Period size: 28 Copynumber: 3.4 Consensus size: 27
77115825 TTTAACCGAG
*
77115835 CACTATGTGTGCGAGATCGGT-AATTGAGG
1 CACTATGTGTGCGAGATC-GTCAA-TG-GA
* * * *
77115864 CACTGTGTGTGCGAGTTCTTCAATCGA
1 CACTATGTGTGCGAGATCGTCAATGGA
*
77115891 GCACTATGTGTGCGAGATCAGTCAGTGGA
1 -CACTATGTGTGCGAGATC-GTCAATGGA
*
77115920 CACTAAGTGTG
1 CACTATGTGTG
77115931 TGAAATGAGA
Statistics
Matches: 53, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
27 1 0.02
28 28 0.53
29 24 0.45
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (27 bp):
CACTATGTGTGCGAGATCGTCAATGGA
Found at i:77119591 original size:39 final size:39
Alignment explanation
Indices: 77119495--77119682 Score: 166
Period size: 40 Copynumber: 4.7 Consensus size: 39
77119485 ATGATGTCCA
* * * *
77119495 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AACCG
* * *
77119535 GACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAATCCG
1 GGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA-CCG
* *
77119575 GGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAACCCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA-CCG
* *
77119614 GGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAACCG
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AACCG
** * *
77119654 GGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTCGTGCGAGT
77119683 CGTTATATCC
Statistics
Matches: 120, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 9 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAACCG
Found at i:77119627 original size:79 final size:81
Alignment explanation
Indices: 77119495--77119675 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
77119485 ATGATGTCCA
* * *
77119495 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTCGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGTG
*
77119559 CGAGTTAATA-AATCCG
66 CGAGTCAATATAA-CCG
* **
77119575 GGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTCGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTCGT
*
77119637 GCGAGTCACTATAACCG
65 GCGAGTCAATATAACCG
**
77119654 GGCTTCGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
77119676 AGCGAGTCGT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGTG
CGAGTCAATATAACCG
Found at i:77119706 original size:79 final size:79
Alignment explanation
Indices: 77119543--77119708 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
77119533 CGGACTAGGA
* * *
77119543 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
77119608 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
77119622 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
77119686 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
77119701 TCCGAAGG
1 TCCGAAGG
77119709 TATGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:77121333 original size:48 final size:48
Alignment explanation
Indices: 77121192--77121337 Score: 202
Period size: 48 Copynumber: 3.0 Consensus size: 48
77121182 ATATATACAC
* * **
77121192 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCAAATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** ** *
77121240 GGCTCATACATATTTCACATTTTCCATTCAGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
77121288 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
77121336 AT
1 AT
77121338 ATATATATCT
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:77123712 original size:23 final size:23
Alignment explanation
Indices: 77123680--77123723 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
77123670 AAAATTTCAC
* *
77123680 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
77123703 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
77123724 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:77127323 original size:40 final size:38
Alignment explanation
Indices: 77127191--77127331 Score: 160
Period size: 38 Copynumber: 3.7 Consensus size: 38
77127181 GGCTTAAAGA
* * *
77127191 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTATTATATCCGAGTTAAAT
*
77127229 CCCGCAGGCTTCGTGCTGGTAATATATCCGAGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAAT
* * *
77127267 CCCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGAG-TTAAA-T
*
77127307 CCCGTC-GGCTTCGTGCTGGTGTTAT
1 CCCG-CAGGCTTCGTGCTGGTATTAT
77127332 GTTTGGGTTT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.01
38 60 0.68
39 5 0.06
40 21 0.24
41 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.31
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAAT
Found at i:77144728 original size:28 final size:28
Alignment explanation
Indices: 77144667--77144764 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
77144657 TCACAAATTG
** * *
77144667 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
77144696 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
77144724 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
77144752 GCACTAAGTGTGC
1 GCACTAAGTGTGC
77144765 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:77152382 original size:28 final size:28
Alignment explanation
Indices: 77152321--77152418 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
77152311 TCACAAATTG
** * *
77152321 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
77152350 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
77152378 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
77152406 GCACTAAGTGTGC
1 GCACTAAGTGTGC
77152419 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:77158256 original size:40 final size:40
Alignment explanation
Indices: 77158148--77158317 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
77158138 CGGGATTTAA
* * * * *
77158148 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77158188 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77158228 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77158268 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77158308 CCGGATATAT
1 CCGGATATAT
77158318 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77166351 original size:40 final size:40
Alignment explanation
Indices: 77166243--77166452 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
77166233 CGGGATTTAA
* * * * *
77166243 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77166283 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77166323 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77166363 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77166403 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77166443 CCGGATATAT
1 CCGGATATAT
77166453 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77168674 original size:42 final size:42
Alignment explanation
Indices: 77168591--77168750 Score: 137
Period size: 42 Copynumber: 3.8 Consensus size: 42
77168581 AGTAAGATGC
* * *
77168591 CAATGCCATATCCCAGATATGGTCTTACATG-GGATCACATAT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATAT
** * * *
77168633 -TGTGCCAATAGCCCAGCTATGGTCTTACACGATGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATAT
* *
77168675 CAATGCCATATCCCAGATATGGTCTTATACGAAGTCTCATTTT
1 CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCA-TAT
* * **
77168718 CGAA-GCCATGTCCAAGACGTGGTCTTACACGAA
1 C-AATGCCATATCCCAGATATGGTCTTACACGAA
77168751 ATCCCATGCT
Statistics
Matches: 94, Mismatches: 19, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
41 4 0.04
42 56 0.60
43 32 0.34
44 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAT
Found at i:77172909 original size:13 final size:13
Alignment explanation
Indices: 77172891--77172915 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77172881 TAATGGTATA
77172891 TTGAATCCATGAT
1 TTGAATCCATGAT
77172904 TTGAATCCATGA
1 TTGAATCCATGA
77172916 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:77174478 original size:48 final size:48
Alignment explanation
Indices: 77174419--77174640 Score: 408
Period size: 48 Copynumber: 4.6 Consensus size: 48
77174409 AAAGTGTAAT
77174419 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
77174467 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
77174515 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
77174563 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
77174611 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
77174641 TGTTGTAACA
Statistics
Matches: 168, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 168 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:77174735 original size:37 final size:37
Alignment explanation
Indices: 77174685--77174770 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
77174675 GGAAATATAT
*
77174685 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
77174722 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
77174759 TCCGGGTAAGAC
1 TCCGGGTAAGAC
77174771 TTCATAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
Found at i:77176744 original size:40 final size:39
Alignment explanation
Indices: 77176687--77177143 Score: 288
Period size: 40 Copynumber: 11.5 Consensus size: 39
77176677 TGAATGATAC
* *
77176687 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-ATATAT
* ** * *
77176727 CCGGGCTAAGACTCGAAGGCATTTGTGGGAGTTGTTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATATAT
* * * *
77176767 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GATATAT
** * *
77176807 CC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGACCCGAAG-GCATTTGTGCTAGTGATATAT
* ** * * *
77176846 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGACCCGAAG-GCATTTGTGCTAGTGATATAT
* ** * *
77176886 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGACCCGAAG-GCATTTGTGCTAGTGATATAT
* ** * *
77176926 CCGGACTAAGTTCC-AAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGACCCGAA-G-GCATTTGTGCTAGTGATATAT
* ** * *
77176966 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGACCCGAAG-GCATTTGTGCTAGTGATATAT
* ** * * *
77177006 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGACCCGAAG-GCATTTGTGCTAGTGATATAT
* ** * * *
77177046 CCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGACCCGAAG-GCATTTGTGCTAGTGATATAT
* ** * **
77177086 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGACCCGAAG-GCATTTGTGCTAGTGATATAT
* *
77177126 CCGGGCTAGGTCCCGAAG
1 CCGGGCTAAGACCCGAAG
77177144 AGCAATCATG
Statistics
Matches: 378, Mismatches: 33, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
39 22 0.06
40 352 0.93
41 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATATAT
Found at i:77177144 original size:40 final size:40
Alignment explanation
Indices: 77176804--77177147 Score: 602
Period size: 40 Copynumber: 8.6 Consensus size: 40
77176794 CTTGTGGTTA
77176804 TATCCGG-CTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
77176843 TATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
77176883 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
77176923 TATCCGGACTAAGTTCC-AAGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAA-GAGCATTCGTGCTAGTGATG
77176963 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
77177003 TATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
77177043 TATCCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
77177083 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * *
77177123 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
77177148 ATCATGCTGG
Statistics
Matches: 292, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
39 9 0.03
40 281 0.96
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:77179305 original size:13 final size:13
Alignment explanation
Indices: 77179287--77179311 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77179277 TAATGGTATA
77179287 TTGAATCCATGAT
1 TTGAATCCATGAT
77179300 TTGAATCCATGA
1 TTGAATCCATGA
77179312 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:77180876 original size:48 final size:48
Alignment explanation
Indices: 77180817--77181038 Score: 408
Period size: 48 Copynumber: 4.6 Consensus size: 48
77180807 AAAGTGTAAT
77180817 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
*
77180865 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGTTATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
77180913 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* * *
77180961 TATGTGGTAAAGCAGAATGGCTAATGTGAAATATATGTGTGATATGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
77181009 TATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAA
77181039 TGTTGTAACA
Statistics
Matches: 168, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 168 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:77181133 original size:37 final size:37
Alignment explanation
Indices: 77181083--77181168 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
77181073 GGAAATATAT
*
77181083 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
77181120 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
77181157 TCCGGGTAAGAC
1 TCCGGGTAAGAC
77181169 TTCATAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
Found at i:77183133 original size:29 final size:28
Alignment explanation
Indices: 77183034--77183126 Score: 116
Period size: 29 Copynumber: 3.2 Consensus size: 28
77183024 TACCTGTGTC
* * *
77183034 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCA-ATTTATA
*
77183062 TGGCCCATTAGGCCCAAATCAACTGTATA
1 TGGCCCATTAGGCCCAAATCAA-TTTATA
77183091 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCA-ATTTATA
77183120 TGGCCCA
1 TGGCCCA
77183127 ACGGGCCTAG
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
28 14 0.25
29 42 0.74
30 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCAATTTATA
Found at i:77183384 original size:16 final size:16
Alignment explanation
Indices: 77183363--77183405 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
77183353 CCAAACTTTC
* *
77183363 GGCTTTTCGGTATTTT
1 GGCTTTTCGGCATTTA
*
77183379 GGCTTTTTGGCATTTA
1 GGCTTTTCGGCATTTA
*
77183395 GGCATTTCGGC
1 GGCTTTTCGGC
77183406 TTTTGCTAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.09, C:0.16, G:0.28, T:0.47
Consensus pattern (16 bp):
GGCTTTTCGGCATTTA
Found at i:77188093 original size:12 final size:13
Alignment explanation
Indices: 77188076--77188107 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
77188066 ATAGCACATT
77188076 TCAAAAC-ATGCA
1 TCAAAACTATGCA
77188088 TCAAAACTATGCA
1 TCAAAACTATGCA
77188101 -CAAAACT
1 TCAAAACT
77188108 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:77202581 original size:15 final size:15
Alignment explanation
Indices: 77202561--77202592 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
77202551 ACTTTCAAGC
77202561 TTCATAGTAAGTGAT
1 TTCATAGTAAGTGAT
77202576 TTCATAGTAAGTGAT
1 TTCATAGTAAGTGAT
77202591 TT
1 TT
77202593 TTATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (15 bp):
TTCATAGTAAGTGAT
Found at i:77202936 original size:16 final size:16
Alignment explanation
Indices: 77202915--77202966 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
77202905 GAGCCTAGGG
77202915 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
*
77202931 GCAAAA--GT--TTAG
1 GCAAAAGTGTAATTAT
77202943 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
*
77202959 GCCAAAGT
1 GCAAAAGT
77202967 TCATATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
12 9 0.31
14 4 0.14
16 16 0.55
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:77202949 original size:28 final size:28
Alignment explanation
Indices: 77202914--77202967 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
77202904 CGAGCCTAGG
77202914 GGCAAAAGTGTAATTATGCAAAAGTTTA
1 GGCAAAAGTGTAATTATGCAAAAGTTTA
*
77202942 GGCAAAAGTGTAATTATGCCAAAGTT
1 GGCAAAAGTGTAATTATGCAAAAGTT
77202968 CATATTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (28 bp):
GGCAAAAGTGTAATTATGCAAAAGTTTA
Found at i:77203786 original size:331 final size:331
Alignment explanation
Indices: 77203183--77203845 Score: 1218
Period size: 331 Copynumber: 2.0 Consensus size: 331
77203173 ATATGATATG
77203183 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
1 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
*
77203248 ATCACTTGATGAGTATGAACTATCACCGAGTATCGGTTCCGATATTCCATGGAAGACGGCAAAGA
66 ATCACTTGATGAGTATGAACTATCACCGAGTATCAGTTCCGATATTCCATGGAAGACGGCAAAGA
*
77203313 TGTGAGGTCGAGGAAAAAGCCCGTTTGAACCTTAAGAATAGATTAGAATACAAGTGACATGTCAC
131 TGTGAGATCGAGGAAAAAGCCCGTTTGAACCTTAAGAATAGATTAGAATACAAGTGACATGTCAC
77203378 TAGGATATTTGAGTTCTGAACTCATTGAGTTGAGTCCGAGTTCGTGAGTTGTAACTAGGCATCCG
196 TAGGATATTTGAGTTCTGAACTCATTGAGTTGAGTCCGAGTTCGTGAGTTGTAACTAGGCATCCG
77203443 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACACCCGAGCTCGTTGAGTTGAGTCC
261 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACACCCGAGCTCGTTGAGTTGAGTCC
77203508 AAGTTC
326 AAGTTC
77203514 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
1 ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
* *
77203579 ATTACTTGATGAGTATGAACTATCACCGAGTATCAGTTCCGATATTCCGTGGAAGACGGCAAAGA
66 ATCACTTGATGAGTATGAACTATCACCGAGTATCAGTTCCGATATTCCATGGAAGACGGCAAAGA
*
77203644 TGTGAGATCGAGGAAAAAGCCCGTTTGAACCTTAGGAATAGATTAGAATACAAGTGACATGTCAC
131 TGTGAGATCGAGGAAAAAGCCCGTTTGAACCTTAAGAATAGATTAGAATACAAGTGACATGTCAC
* *
77203709 TAGGATATTTGAGTTCTGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGTTGTAACTAGGCATCCG
196 TAGGATATTTGAGTTCTGAACTCATTGAGTTGAGTCCGAGTTCGTGAGTTGTAACTAGGCATCCG
* * * *
77203774 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGATTCC
261 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACACCCGAGCTCGTTGAGTTGAGTCC
*
77203839 GAGTTC
326 AAGTTC
77203845 A
1 A
77203846 CTTATGGGCG
Statistics
Matches: 320, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
331 320 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (331 bp):
ATGCTTAATATTATCATGAAATGTTATGTTTTGTGGTTATTGTTAAATAATATGTAATTATGTGA
ATCACTTGATGAGTATGAACTATCACCGAGTATCAGTTCCGATATTCCATGGAAGACGGCAAAGA
TGTGAGATCGAGGAAAAAGCCCGTTTGAACCTTAAGAATAGATTAGAATACAAGTGACATGTCAC
TAGGATATTTGAGTTCTGAACTCATTGAGTTGAGTCCGAGTTCGTGAGTTGTAACTAGGCATCCG
AACTCATTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACACCCGAGCTCGTTGAGTTGAGTCC
AAGTTC
Found at i:77205790 original size:12 final size:13
Alignment explanation
Indices: 77205773--77205804 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
77205763 ATAGCACATT
77205773 TCAAAAC-ATGCA
1 TCAAAACTATGCA
77205785 TCAAAACTATGCA
1 TCAAAACTATGCA
77205798 -CAAAACT
1 TCAAAACT
77205805 TAACATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:77206408 original size:86 final size:85
Alignment explanation
Indices: 77206254--77206413 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 85
77206244 GACAAGTACA
* * *
77206254 ATGCCGACGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTATCCCAGACAGGGT
1 ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAGAATCGATGCCTCTATCCCAGACACGGT
*
77206319 CTTATACGAAAAAAGATGCG
66 CTTACACGAAAAAAGATGCG
* * *
77206339 ATGCCGATGTCCCAGACATGGTCTTACACT-TAAATTTCA-AATCGATGCCTGTGTCCCAGACAC
1 ATGCCGACGTCCCAGACATGGTCTTACA-TGT-AA-TTCAGAATCGATGCCTCTATCCCAGACAC
77206402 GGTCTTACACGA
63 GGTCTTACACGA
77206414 TAATTCAGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
85 27 0.42
86 34 0.52
87 4 0.06
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAGAATCGATGCCTCTATCCCAGACACGGT
CTTACACGAAAAAAGATGCG
Found at i:77206757 original size:29 final size:29
Alignment explanation
Indices: 77206715--77206812 Score: 144
Period size: 29 Copynumber: 3.4 Consensus size: 29
77206705 CTTACATTTT
* * *
77206715 TCACACTTATATGGCTCGTTAGGCCCAAA
1 TCACATTTATATGGCCCATTAGGCCCAAA
77206744 TCACATTTATATGGCCCATTAGGCCCAAA
1 TCACATTTATATGGCCCATTAGGCCCAAA
*
77206773 TCACATTTATATGGCCCATTAGGCCC-AG
1 TCACATTTATATGGCCCATTAGGCCCAAA
*
77206801 TCACATTCATAT
1 TCACATTTATAT
77206813 TCATGCTCAC
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 12 0.19
29 52 0.81
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
TCACATTTATATGGCCCATTAGGCCCAAA
Found at i:77212477 original size:19 final size:20
Alignment explanation
Indices: 77212449--77212488 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
77212439 GCATGTGACC
77212449 TTTTAAAAG-TTGAAACTTT
1 TTTTAAAAGTTTGAAACTTT
*
77212468 TTTTATAAGTTTTGAAACTTT
1 TTTTAAAAG-TTTGAAACTTT
77212489 CATATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTTTAAAAGTTTGAAACTTT
Found at i:77216668 original size:30 final size:30
Alignment explanation
Indices: 77216613--77216772 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
77216603 ATAGTGAATC
77216613 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77216642 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77216672 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
77216701 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
77216729 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77216759 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77216773 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:77216705 original size:59 final size:57
Alignment explanation
Indices: 77216613--77216772 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
77216603 ATAGTGAATC
*
77216613 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
77216672 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
77216729 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
77216773 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:77224721 original size:30 final size:30
Alignment explanation
Indices: 77224666--77224825 Score: 204
Period size: 29 Copynumber: 5.5 Consensus size: 30
77224656 ATAGTGAATC
77224666 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77224695 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
77224725 CGTACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
77224754 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
77224782 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
77224812 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77224826 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 46 0.39
30 46 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:77233706 original size:27 final size:27
Alignment explanation
Indices: 77233659--77233786 Score: 116
Period size: 27 Copynumber: 4.7 Consensus size: 27
77233649 CTTTAGAGTA
*
77233659 CGCCACAAAAGGATTCC-TTTCATAGAT
1 CGCCAC-AAAGGTTTCCTTTTCATAGAT
* *
77233686 TGCCACAAAGGTTTCCTTTTCTTAGAT
1 CGCCACAAAGGTTTCCTTTTCATAGAT
* * * *
77233713 CGCTAC-AACGTCTTCATTTTCATAAAT
1 CGCCACAAAGGT-TTCCTTTTCATAGAT
* * * *
77233740 CACCGCAAAGGATTCATTTTCATAGAT
1 CGCCACAAAGGTTTCCTTTTCATAGAT
*
77233767 CACCACAAAGGTTTCCTTTT
1 CGCCACAAAGGTTTCCTTTT
77233787 TTGGGCGTGT
Statistics
Matches: 80, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
26 13 0.16
27 64 0.80
28 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (27 bp):
CGCCACAAAGGTTTCCTTTTCATAGAT
Found at i:77240706 original size:53 final size:53
Alignment explanation
Indices: 77240625--77240731 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
77240615 GCTGAGATTG
77240625 GGGCTTGATTTATTTAAGATACTATTTGTATTATCAGTTCAGGGAGTAATGAT
1 GGGCTTGATTTATTTAAGATACTATTTGTATTATCAGTTCAGGGAGTAATGAT
* * *
77240678 GGGCTTGATTTATTTAAGATATTGTTTGTATTATCAGTTTAGGGAGTAATGAT
1 GGGCTTGATTTATTTAAGATACTATTTGTATTATCAGTTCAGGGAGTAATGAT
77240731 G
1 G
77240732 CAAAGATGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (53 bp):
GGGCTTGATTTATTTAAGATACTATTTGTATTATCAGTTCAGGGAGTAATGAT
Found at i:77240793 original size:31 final size:31
Alignment explanation
Indices: 77240753--77240861 Score: 98
Period size: 31 Copynumber: 3.5 Consensus size: 31
77240743 GACTAAAATG
* *
77240753 CAAATTTGTAAACTTACTAATAGTTCAATGGG
1 CAAA-TTGTAAACTTACTAATAGTTGAATGGA
* * *
77240785 CAATTTGT-AACTTGCTAA-AATTGAAT-GA
1 CAAATTGTAAACTTACTAATAGTTGAATGGA
* * *
77240813 CAAAATTGTAAATTTACTAATAGTTGAGTGGC
1 C-AAATTGTAAACTTACTAATAGTTGAATGGA
*
77240845 CAAATTGTAAATTTACT
1 CAAATTGTAAACTTACT
77240862 CATCCCTAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
28 2 0.03
29 12 0.19
30 17 0.27
31 26 0.42
32 5 0.08
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.36
Consensus pattern (31 bp):
CAAATTGTAAACTTACTAATAGTTGAATGGA
Found at i:77242359 original size:14 final size:13
Alignment explanation
Indices: 77242334--77242370 Score: 56
Period size: 13 Copynumber: 2.7 Consensus size: 13
77242324 TTATATCATA
77242334 AAATTCTAAATCCTT
1 AAATT-TAAATCC-T
77242349 AAATTTAAATCCT
1 AAATTTAAATCCT
77242362 AAATTTAAA
1 AAATTTAAA
77242371 AAAAAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 10 0.45
14 7 0.32
15 5 0.23
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATTTAAATCCT
Found at i:77242581 original size:21 final size:21
Alignment explanation
Indices: 77242565--77242606 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
77242555 GGATTTATAT
77242565 TTTAAAATTTAATATTTAAAG
1 TTTAAAATTTAATATTTAAAG
*
77242586 TTTAACATTTAGA-ATTTAAAG
1 TTTAAAATTTA-ATATTTAAAG
77242607 GTTATAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (21 bp):
TTTAAAATTTAATATTTAAAG
Found at i:77242582 original size:14 final size:14
Alignment explanation
Indices: 77242565--77242604 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
77242555 GGATTTATAT
*
77242565 TTTAAAATTTAATA
1 TTTAAAATTTAACA
*
77242579 TTTAAAGTTTAACA
1 TTTAAAATTTAACA
*
77242593 TTTAGAATTTAA
1 TTTAAAATTTAA
77242605 AGGTTATAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (14 bp):
TTTAAAATTTAACA
Found at i:77247604 original size:2 final size:2
Alignment explanation
Indices: 77247587--77247620 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
77247577 ATCAATCTAC
* *
77247587 AT AT AT GT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77247621 GGTAAAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:77262793 original size:14 final size:13
Alignment explanation
Indices: 77262774--77262897 Score: 51
Period size: 14 Copynumber: 9.2 Consensus size: 13
77262764 CATAATTTGT
77262774 AATAAAAATATATA
1 AATAAAAATA-ATA
77262788 AATAAATAATAATA
1 AATAAA-AATAATA
*
77262802 GATAAAAAATAATCA
1 AAT-AAAAATAAT-A
*
77262817 AAGT-AGAAT-ATA
1 AA-TAAAAATAATA
*
77262829 AATAAAATTAA-A
1 AATAAAAATAATA
** * **
77262841 ACCACAAATTGT-
1 AATAAAAATAATA
77262853 AATAAAACATATATA
1 AATAAAA-ATA-ATA
77262868 AATAAATAATAATA
1 AATAAA-AATAATA
*
77262882 GATAAAAGATAA-A
1 AATAAAA-ATAATA
77262895 AAT
1 AAT
77262898 GAAATAATTC
Statistics
Matches: 80, Mismatches: 18, Indels: 25
0.65 0.15 0.20
Matches are distributed among these distances:
11 1 0.01
12 16 0.20
13 9 0.11
14 34 0.43
15 18 0.22
16 2 0.03
ACGTcount: A:0.66, C:0.04, G:0.05, T:0.25
Consensus pattern (13 bp):
AATAAAAATAATA
Found at i:77262795 original size:18 final size:17
Alignment explanation
Indices: 77262774--77262813 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
77262764 CATAATTTGT
*
77262774 AATAAAAATATATAAATA
1 AATAAAAATAGATAAA-A
*
77262792 AATAATAATAGATAAAA
1 AATAAAAATAGATAAAA
77262809 AATAA
1 AATAA
77262814 TCAAAGTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
AATAAAAATAGATAAAA
Found at i:77262806 original size:28 final size:27
Alignment explanation
Indices: 77262773--77262905 Score: 70
Period size: 28 Copynumber: 4.9 Consensus size: 27
77262763 CCATAATTTG
77262773 TAATAAAAATATATAAATAAATAATAA
1 TAATAAAAATATATAAATAAATAATAA
77262800 TAGATAAAAA-ATAATCAAAGTAGAAT-AT-A
1 TA-ATAAAAATAT-AT-AAA-TA-AATAATAA
* * **
77262829 -AAT-AAAAT-TA-AAACCACA-AATTG
1 TAATAAAAATATATAAA-TAAATAATAA
77262852 TAATAAAACATATATAAATAAATAATAA
1 TAATAAAA-ATATATAAATAAATAATAA
77262880 TAGATAAAAGATA-A-AAATGAAATAAT
1 TA-ATAAAA-ATATATAAAT-AAATAAT
77262906 TCAGGTTTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 31
0.67 0.07 0.26
Matches are distributed among these distances:
22 3 0.04
23 4 0.05
24 3 0.04
25 4 0.05
26 7 0.09
27 14 0.17
28 26 0.32
29 13 0.16
30 4 0.05
31 3 0.04
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (27 bp):
TAATAAAAATATATAAATAAATAATAA
Found at i:77262819 original size:79 final size:80
Alignment explanation
Indices: 77262733--77262893 Score: 279
Period size: 79 Copynumber: 2.0 Consensus size: 80
77262723 TAAAATAAAG
* * *
77262733 AATCAAAGTAGAATATAAATAAAATTAAAGCCATAATTTGTAATAAAA-ATATATAAATAAATAA
1 AATCAAAGTAGAATATAAATAAAATTAAAACCACAAATTGTAATAAAACATATATAAATAAATAA
77262797 TAATAGATAAAAAAT
66 TAATAGATAAAAAAT
77262812 AATCAAAGTAGAATATAAATAAAATTAAAACCACAAATTGTAATAAAACATATATAAATAAATAA
1 AATCAAAGTAGAATATAAATAAAATTAAAACCACAAATTGTAATAAAACATATATAAATAAATAA
*
77262877 TAATAGATAAAAGAT
66 TAATAGATAAAAAAT
77262892 AA
1 AA
77262894 AAATGAAATA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 45 0.58
80 32 0.42
ACGTcount: A:0.63, C:0.05, G:0.06, T:0.26
Consensus pattern (80 bp):
AATCAAAGTAGAATATAAATAAAATTAAAACCACAAATTGTAATAAAACATATATAAATAAATAA
TAATAGATAAAAAAT
Found at i:77268508 original size:23 final size:22
Alignment explanation
Indices: 77268478--77268523 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
77268468 TCGGTTATAA
*
77268478 TTATTTTTAGTCT-AGATTTTTC
1 TTATTTTTAGACTCA-ATTTTTC
77268500 TTATCTTTTAGACTCAATTTTTC
1 TTAT-TTTTAGACTCAATTTTTC
77268523 T
1 T
77268524 GATACGGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 16 0.76
24 1 0.05
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.61
Consensus pattern (22 bp):
TTATTTTTAGACTCAATTTTTC
Found at i:77272751 original size:214 final size:214
Alignment explanation
Indices: 77272382--77272809 Score: 856
Period size: 214 Copynumber: 2.0 Consensus size: 214
77272372 TATATATATA
77272382 TATACAATTCACAACACAACATTTAATTCAAGCATATAGACATACGCAATTTAGTTACACAAACT
1 TATACAATTCACAACACAACATTTAATTCAAGCATATAGACATACGCAATTTAGTTACACAAACT
77272447 TACATTGACAAATGTTCGTGTACGTAAAATCTACTAATCTGACATTTTCCTCTTTTCCTCGTTCT
66 TACATTGACAAATGTTCGTGTACGTAAAATCTACTAATCTGACATTTTCCTCTTTTCCTCGTTCT
77272512 AGTTCCGAATTTGGTCTATCCAGATCTATATGAGTAAATTTAACATCAATTTATCATATTTCATA
131 AGTTCCGAATTTGGTCTATCCAGATCTATATGAGTAAATTTAACATCAATTTATCATATTTCATA
77272577 TTCAAGGGGACTCAATTTT
196 TTCAAGGGGACTCAATTTT
77272596 TATACAATTCACAACACAACATTTAATTCAAGCATATAGACATACGCAATTTAGTTACACAAACT
1 TATACAATTCACAACACAACATTTAATTCAAGCATATAGACATACGCAATTTAGTTACACAAACT
77272661 TACATTGACAAATGTTCGTGTACGTAAAATCTACTAATCTGACATTTTCCTCTTTTCCTCGTTCT
66 TACATTGACAAATGTTCGTGTACGTAAAATCTACTAATCTGACATTTTCCTCTTTTCCTCGTTCT
77272726 AGTTCCGAATTTGGTCTATCCAGATCTATATGAGTAAATTTAACATCAATTTATCATATTTCATA
131 AGTTCCGAATTTGGTCTATCCAGATCTATATGAGTAAATTTAACATCAATTTATCATATTTCATA
77272791 TTCAAGGGGACTCAATTTT
196 TTCAAGGGGACTCAATTTT
77272810 CATCCTAGGC
Statistics
Matches: 214, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
214 214 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (214 bp):
TATACAATTCACAACACAACATTTAATTCAAGCATATAGACATACGCAATTTAGTTACACAAACT
TACATTGACAAATGTTCGTGTACGTAAAATCTACTAATCTGACATTTTCCTCTTTTCCTCGTTCT
AGTTCCGAATTTGGTCTATCCAGATCTATATGAGTAAATTTAACATCAATTTATCATATTTCATA
TTCAAGGGGACTCAATTTT
Found at i:77274126 original size:42 final size:42
Alignment explanation
Indices: 77274067--77274146 Score: 160
Period size: 42 Copynumber: 1.9 Consensus size: 42
77274057 AATCCATAAA
77274067 TAGACATAGCCTATACTCCTCTTGTATCATTCGAATTCTAAT
1 TAGACATAGCCTATACTCCTCTTGTATCATTCGAATTCTAAT
77274109 TAGACATAGCCTATACTCCTCTTGTATCATTCGAATTC
1 TAGACATAGCCTATACTCCTCTTGTATCATTCGAATTC
77274147 GACATAGTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.38
Consensus pattern (42 bp):
TAGACATAGCCTATACTCCTCTTGTATCATTCGAATTCTAAT
Found at i:77276669 original size:28 final size:28
Alignment explanation
Indices: 77276604--77276675 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
77276594 ATAGTGAATC
* *
77276604 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
77276633 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
77276661 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
77276676 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:77287603 original size:35 final size:37
Alignment explanation
Indices: 77287526--77287603 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 37
77287516 TTATAGATTT
* *
77287526 ATTATATTCATATTATTTTTTATGCATTTTATTTCAA
1 ATTATATTCATATTACTTTTTATGCATTTTACTTCAA
* **
77287563 TTTATATT-ATATTACTTTTTAT-TTTTTTACTTCAA
1 ATTATATTCATATTACTTTTTATGCATTTTACTTCAA
77287598 ATTATA
1 ATTATA
77287604 AAAATATTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 15 0.43
36 13 0.37
37 7 0.20
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.62
Consensus pattern (37 bp):
ATTATATTCATATTACTTTTTATGCATTTTACTTCAA
Found at i:77288309 original size:6 final size:6
Alignment explanation
Indices: 77288280--77288327 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
77288270 AAATTACCTC
* *
77288280 TTAAAA GTAAAA TAAAAAA TTTAAAA TTAAAA TTAAAA TTAAAA TTAA
1 TTAAAA TTAAAA T-TAAAA -TTAAAA TTAAAA TTAAAA TTAAAA TTAA
77288328 TTAAAGTACC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 27 0.75
7 8 0.22
8 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (6 bp):
TTAAAA
Found at i:77291515 original size:28 final size:28
Alignment explanation
Indices: 77291483--77291537 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
77291473 ATTAATTTTT
77291483 AAAATTA-AAAAAATAAATTTTTAATATA
1 AAAATTATAAAAAAT-AATTTTTAATATA
* *
77291511 AAAATTATAAAACATATTTTTTAATAT
1 AAAATTATAAAAAATAATTTTTAATAT
77291538 TTTTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (28 bp):
AAAATTATAAAAAATAATTTTTAATATA
Found at i:77296582 original size:23 final size:24
Alignment explanation
Indices: 77296536--77296584 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
77296526 TCAAAATAAC
*
77296536 TTTTTTTATTTTAGTTATATAATT
1 TTTTTTTATTTTAGTTATAAAATT
77296560 TTTTTTTATGTTT-GTT-TAAAATT
1 TTTTTTTAT-TTTAGTTATAAAATT
77296583 TT
1 TT
77296585 GATGTTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 8 0.35
24 12 0.52
25 3 0.13
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.71
Consensus pattern (24 bp):
TTTTTTTATTTTAGTTATAAAATT
Found at i:77298437 original size:47 final size:45
Alignment explanation
Indices: 77298365--77298581 Score: 197
Period size: 47 Copynumber: 4.7 Consensus size: 45
77298355 GATTTCTTGT
* **
77298365 GTGCCAGTGTAAGACATATCTGGGACATGCATCGGCCACGTTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-GAGATGA
* * *
77298411 GTGCCAGTATTAGACTATGTCTGGGACATGCATCGGCGTAGAGATGA
1 GTGCCAGTGTAAGAC-ATGTCTGGGACATGCATCGGC-CAGAGATGA
* *
77298458 GTGCCAGTGTAAGACATGTCTGGGACATACATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-AGA-GATGA
** * * * * * *
77298505 -TAGCTTGTGTAAGACGTGTCTGAGACACGTATCGGCTA-AGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAGAGATG-A
*
77298549 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
77298582 AGCACGTATA
Statistics
Matches: 138, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
43 1 0.01
44 28 0.20
45 2 0.01
46 36 0.26
47 70 0.51
48 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAGAGATGA
Found at i:77298525 original size:93 final size:91
Alignment explanation
Indices: 77298365--77298581 Score: 242
Period size: 93 Copynumber: 2.4 Consensus size: 91
77298355 GATTTCTTGT
* * *
77298365 GTGCCAGTGTAAGACATATCTGGGACATGCATCGGCCACGTTATGAGTGCCAGTATTAGACTATG
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGTGATGAGTGCCAGTATAAGACTATG
* *
77298430 TCTGGGACATGCATCGGCGT-AGAGATGA
66 TCTGAGACACGCATCGGC-TAAGAG-T-A
* * ** * *
77298458 GTGCCAGTGTAAGACATGTCTGGGACATACATCGGCCTCGATGATGA-TAGCTTGTGTAAGAC-G
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACG-TGATGAGT-GCCAGTATAAGACTA
* *
77298521 TGTCTGAGACACGTATCGGCTAAGAGTT
64 TGTCTGAGACACGCATCGGCTAAGAGTA
*
77298549 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
77298582 AGCACGTATA
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
91 31 0.29
92 2 0.02
93 59 0.56
94 14 0.13
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (91 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGTGATGAGTGCCAGTATAAGACTATG
TCTGAGACACGCATCGGCTAAGAGTA
Found at i:77301795 original size:40 final size:40
Alignment explanation
Indices: 77301667--77301883 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
77301657 AAACCAAGTA
* *
77301667 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77301706 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77301745 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77301785 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
77301825 CCTTCGGGGCTTAGCCCGGA-ATTATTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77301865 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77301884 TTATCATCCG
Statistics
Matches: 163, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 52 0.32
40 111 0.68
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77305824 original size:18 final size:18
Alignment explanation
Indices: 77305801--77305841 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
77305791 GGCCACATAT
77305801 AGAGGTGATTATCATGGC
1 AGAGGTGATTATCATGGC
* * *
77305819 AGAGGTGGTTATCGTGGT
1 AGAGGTGATTATCATGGC
77305837 AGAGG
1 AGAGG
77305842 AGGTCGAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (18 bp):
AGAGGTGATTATCATGGC
Found at i:77307937 original size:10 final size:10
Alignment explanation
Indices: 77307922--77307955 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
77307912 AGCGTATTAG
*
77307922 TATATATGCA
1 TATATATGTA
*
77307932 TATATATATA
1 TATATATGTA
77307942 TATATATGTA
1 TATATATGTA
77307952 TATA
1 TATA
77307956 AATTCAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (10 bp):
TATATATGTA
Found at i:77318969 original size:41 final size:40
Alignment explanation
Indices: 77318912--77319012 Score: 98
Period size: 41 Copynumber: 2.5 Consensus size: 40
77318902 TAGTAAGAGC
*
77318912 CTTTGCAATTTCAACATGGTGA-A-AAGAGGATATATTCCAAA
1 CTTTGC-ATATCAACATGGTGATATAAGA-G-TATATTCCAAA
* * *
77318953 CTTTGCAGTATCAACATGATGATATAAGAGTCTATTCTAAA
1 CTTTGCA-TATCAACATGGTGATATAAGAGTATATTCCAAA
*
77318994 GTTTGCATCATCAACATGG
1 CTTTGCAT-ATCAACATGG
77319013 CGAGAAGACC
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
40 2 0.04
41 42 0.84
42 2 0.04
43 4 0.08
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (40 bp):
CTTTGCATATCAACATGGTGATATAAGAGTATATTCCAAA
Found at i:77319060 original size:41 final size:38
Alignment explanation
Indices: 77318986--77319058 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
77318976 ATAAGAGTCT
* *
77318986 ATTCTAAAGTTTGCATCATCAACATGGCGAGAAGACCC
1 ATTCTAAACTTTGCACCATCAACATGGCGAGAAGACCC
* *
77319024 ATTCTGAACTTTGCACCATCAACATGGCGGGAAGA
1 ATTCTAAACTTTGCACCATCAACATGGCGAGAAGA
77319059 AGTTTTTCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (38 bp):
ATTCTAAACTTTGCACCATCAACATGGCGAGAAGACCC
Found at i:77322348 original size:29 final size:29
Alignment explanation
Indices: 77322273--77322388 Score: 103
Period size: 29 Copynumber: 4.1 Consensus size: 29
77322263 TGAATATAAG
* ** * * *
77322273 GTGATTTGGGCCTAACAGACCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATGAAT
*
77322302 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
*
77322331 GTGAATTGGGCCTTATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATGAAT
** *
77322360 AAG-A-TGGGCC-AAGTGGGCCATATGCAT
1 GTGAATTGGGCCTAA-TGGGCCATATGAAT
77322387 GT
1 GT
77322389 ATGTAGGGGT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 19 0.26
28 1 0.01
29 52 0.71
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATGAAT
Found at i:77326558 original size:8 final size:8
Alignment explanation
Indices: 77326545--77326579 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
77326535 GTAGATCGGC
77326545 AAAAGCCG
1 AAAAGCCG
77326553 AAAAGCCG
1 AAAAGCCG
*
77326561 AAATGCCG
1 AAAAGCCG
*
77326569 AAAAGCTG
1 AAAAGCCG
77326577 AAA
1 AAA
77326580 GTTTGGCTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.51, C:0.20, G:0.23, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:77326820 original size:28 final size:29
Alignment explanation
Indices: 77326789--77326849 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
77326779 GTGAACATGA
77326789 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
* *
77326817 ATATAAAGGTGATTTGGGCCTGATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
77326846 ATAT
1 ATAT
77326850 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:77326862 original size:29 final size:29
Alignment explanation
Indices: 77326801--77326882 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
77326791 ATAAGGTGAT
* * * ** *
77326801 TTGGGCCTAACGGGCCATATAAAGGTGAT
1 TTGGGCCTGATGGGCCATATGAATATGAA
77326830 TTGGGCCTGATGGGCCATATGAATATGAA
1 TTGGGCCTGATGGGCCATATGAATATGAA
77326859 TTGGGCCCTG-TGGGCCATATGAAT
1 TTGGG-CCTGATGGGCCATATGAAT
77326883 GAGATGGGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 42 0.91
30 4 0.09
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATATGAATATGAA
Found at i:77326892 original size:27 final size:29
Alignment explanation
Indices: 77326812--77326906 Score: 90
Period size: 29 Copynumber: 3.3 Consensus size: 29
77326802 TGGGCCTAAC
* ** *
77326812 GGGCCATATAAAGGTGATTTGGG-CCTGAT
1 GGGCCATATGAATATGAATTGGGCCCTG-T
77326841 GGGCCATATGAATATGAATTGGGCCCTGT
1 GGGCCATATGAATATGAATTGGGCCCTGT
**
77326870 GGGCCATATG-A-ATGAGA-TGGGCCAAGT
1 GGGCCATATGAATATGA-ATTGGGCCCTGT
77326897 GGGCCATATG
1 GGGCCATATG
77326907 CATGTATGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
27 22 0.38
28 2 0.03
29 30 0.52
30 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (29 bp):
GGGCCATATGAATATGAATTGGGCCCTGT
Found at i:77332947 original size:29 final size:29
Alignment explanation
Indices: 77332913--77332968 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
77332903 TCTTAGAGAT
77332913 TAAATCAATAACTTACTCAAAATCTTTCA
1 TAAATCAATAACTTACTCAAAATCTTTCA
*
77332942 TAAATCAATAACTTACTCGAAATCTTT
1 TAAATCAATAACTTACTCAAAATCTTT
77332969 GATCATTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.36
Consensus pattern (29 bp):
TAAATCAATAACTTACTCAAAATCTTTCA
Found at i:77334817 original size:49 final size:48
Alignment explanation
Indices: 77334714--77334880 Score: 226
Period size: 48 Copynumber: 3.5 Consensus size: 48
77334704 GTCTCAATCG
* ** *
77334714 ATGCCATGTCCCAGACATGGTTTTACATGAAATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
77334762 ATGCCATGTCCCACATATGGTCTTAGATGGGGATCACATATCGATGTCA
1 ATGCCATGTCCCAGACATGGTCTTACAT-GGGATCACATATCGATGCCA
* *
77334811 ATGCCATGTTCCAGACATGGTCTTACATAGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
77334859 ATGCCATGTCCTAGACATGGTC
1 ATGCCATGTCCCAGACATGGTC
77334881 AATTCCATGT
Statistics
Matches: 102, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 62 0.61
49 40 0.39
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:77334888 original size:23 final size:23
Alignment explanation
Indices: 77334857--77334903 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
77334847 ATATCGATGC
77334857 CAATGCCATGTCCTAGACATGGT
1 CAATGCCATGTCCTAGACATGGT
* *
77334880 CAATTCCATGTCCTAGATATGGT
1 CAATGCCATGTCCTAGACATGGT
77334903 C
1 C
77334904 TTACATGGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (23 bp):
CAATGCCATGTCCTAGACATGGT
Found at i:77334902 original size:71 final size:71
Alignment explanation
Indices: 77334807--77334951 Score: 229
Period size: 71 Copynumber: 2.0 Consensus size: 71
77334797 ACATATCGAT
*
77334807 GTCAATGCCATGTTCCAGACATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCTA
1 GTCAATGCCATGTTCCAGACATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCA
77334872 GACATG
66 GACATG
* * * *
77334878 GTCAATTCCATG-TCCTAGATATGGTCTTACATGGGATCACATATCGATGCCAATGCCTTGTCCC
1 GTCAATGCCATGTTCC-AGACATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCC
77334942 AGACATG
65 AGACATG
77334949 GTC
1 GTC
77334952 TTACATGGGA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
70 3 0.04
71 65 0.96
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (71 bp):
GTCAATGCCATGTTCCAGACATGGTCTTACATAGGATCACATATCGATGCCAATGCCATGTCCCA
GACATG
Found at i:77334980 original size:37 final size:37
Alignment explanation
Indices: 77334946--77335030 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
77334936 TGTCCCAGAC
* *
77334946 ATGGTCTTACATGGGATCACAATGTCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
* * *
77334983 ATGGTCTTACATGTCATTACGATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
*
77335020 ATGGTTTTACA
1 ATGGTCTTACA
77335031 CGTACTCACA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (37 bp):
ATGGTCTTACATGGCATCACAATGCCATAGCCCAGCT
Found at i:77338540 original size:21 final size:21
Alignment explanation
Indices: 77338514--77338563 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
77338504 ATTAAAACAC
77338514 ACTTTTACTACATATTTTATA
1 ACTTTTACTACATATTTTATA
77338535 ACTTTTACTACATATTTTATA
1 ACTTTTACTACATATTTTATA
77338556 ACTTTTAC
1 ACTTTTAC
77338564 AATTTAATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (21 bp):
ACTTTTACTACATATTTTATA
Found at i:77340177 original size:43 final size:43
Alignment explanation
Indices: 77340129--77340210 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
77340119 AACATAATGG
77340129 CTTCAGTTTATTCT-ATGATGAACTATGTGTGCTAGTATACATT
1 CTTCAGTTTA-TCTGATGATGAACTATGTGTGCTAGTATACATT
* *
77340172 CTTCAGTTTATCTGATGATGCACTATGTGTGTTAGTATA
1 CTTCAGTTTATCTGATGATGAACTATGTGTGCTAGTATA
77340211 TTTCCTTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.44
Consensus pattern (43 bp):
CTTCAGTTTATCTGATGATGAACTATGTGTGCTAGTATACATT
Found at i:77340237 original size:43 final size:43
Alignment explanation
Indices: 77340129--77340238 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 43
77340119 AACATAATGG
* * * *
77340129 CTTCAGTTTATTCTATGATGAACTATGTGTGCTAGTATACATT
1 CTTCAATTTATCCAATGATGCACTATGTGTGCTAGTATACATT
* ** * *
77340172 CTTCAGTTTATCTGATGATGCACTATGTGTGTTAGTATA-TTT
1 CTTCAATTTATCCAATGATGCACTATGTGTGCTAGTATACATT
*
77340214 CCTTCAATTTATCCAATGTTGCACT
1 -CTTCAATTTATCCAATGATGCACT
77340239 GTAGTGCCAT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.04
43 54 0.96
ACGTcount: A:0.24, C:0.16, G:0.15, T:0.45
Consensus pattern (43 bp):
CTTCAATTTATCCAATGATGCACTATGTGTGCTAGTATACATT
Found at i:77342324 original size:48 final size:49
Alignment explanation
Indices: 77342191--77342324 Score: 193
Period size: 48 Copynumber: 2.8 Consensus size: 49
77342181 TGGTAGGATG
* * * *
77342191 CCAATGCCATATCCCGGATATGGTCTTACATGGGATC-ACGTATCGGTA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGACGTATCGATA
*
77342239 CCAATGTCATGTCCCAGACATGGTCTTACATGGGATCGTA-G-ATCGATA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCG-ACGTATCGATA
77342287 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCG
77342325 CACATAATCC
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
48 76 0.97
49 1 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (49 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGACGTATCGATA
Found at i:77345005 original size:40 final size:40
Alignment explanation
Indices: 77344877--77345007 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
77344867 TATGCTGGAA
* * * *
77344877 ATTATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
77344917 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
77344957 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
77344997 ATTATATCCGG
1 ATTATATCCGG
77345008 TTATATTCCG
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:77348830 original size:40 final size:40
Alignment explanation
Indices: 77348754--77348935 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
77348744 AACCCAAGTA
* * *
77348754 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
77348793 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
77348833 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
** *
77348873 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
77348913 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77348936 CATCGAATAA
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.09
40 118 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:77356889 original size:40 final size:40
Alignment explanation
Indices: 77356822--77357086 Score: 383
Period size: 40 Copynumber: 6.6 Consensus size: 40
77356812 AACCCAAGTA
*
77356822 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
*
77356861 CCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
77356901 CCTTTGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
*
77356941 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATG
* *
77356984 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
*
77357024 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
77357064 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77357087 CATGAATAAT
Statistics
Matches: 204, Mismatches: 14, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
39 13 0.06
40 154 0.75
41 1 0.00
43 35 0.17
44 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:77357022 original size:123 final size:120
Alignment explanation
Indices: 77356822--77357086 Score: 390
Period size: 123 Copynumber: 2.2 Consensus size: 120
77356812 AACCCAAGTA
* *
77356822 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* * * **
77356886 CAACTCGCACAAATGCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
66 CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATG
* *
77356941 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
*
77357006 TAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
63 TAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATG
77357064 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77357087 CATGAATAAT
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
119 13 0.10
120 10 0.08
121 1 0.01
123 105 0.81
124 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGGAACTAGCACAAATG
Found at i:77360534 original size:27 final size:27
Alignment explanation
Indices: 77360487--77360586 Score: 87
Period size: 27 Copynumber: 3.7 Consensus size: 27
77360477 CTGCATAATA
* *
77360487 TGAGTTATCTCCACAAGTGGTGAAGTG
1 TGAGTTGTCTCTACAAGTGGTGAAGTG
77360514 TGAGTTGTCTCTACACA-TGGTGAAGTG
1 TGAGTTGTCTCTACA-AGTGGTGAAGTG
** * * * *
77360541 TGAAATGTCTCTACATGTTGTGAACTA
1 TGAGTTGTCTCTACAAGTGGTGAAGTG
*
77360568 TGA-TATGTATCTACAAGTG
1 TGAGT-TGTCTCTACAAGTG
77360587 ATGAGCTACC
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (27 bp):
TGAGTTGTCTCTACAAGTGGTGAAGTG
Found at i:77360656 original size:27 final size:27
Alignment explanation
Indices: 77360616--77360689 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
77360606 CACAGGTGGC
* * * *
77360616 AAGTGCGAGCTGACCTACTAATTGTCA
1 AAGTGCTAGCTGACCTACGAACTATCA
* *
77360643 AAGTGCTAGTTGACCTACGAACTATGA
1 AAGTGCTAGCTGACCTACGAACTATCA
*
77360670 AAGTGCTAGCTGACCCACGA
1 AAGTGCTAGCTGACCTACGA
77360690 GCATGCGAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (27 bp):
AAGTGCTAGCTGACCTACGAACTATCA
Found at i:77369713 original size:37 final size:36
Alignment explanation
Indices: 77369660--77369749 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 36
77369650 TATAAAAGAA
77369660 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
*
77369697 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
*
77369733 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
77369750 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
36 11 0.22
37 38 0.78
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCG
Found at i:77369900 original size:49 final size:49
Alignment explanation
Indices: 77369845--77370010 Score: 287
Period size: 49 Copynumber: 3.4 Consensus size: 49
77369835 TTTTACATTA
*
77369845 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
77369894 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* *
77369943 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
*
77369992 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
77370011 CATATATGTA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
Found at i:77376148 original size:43 final size:41
Alignment explanation
Indices: 77376077--77376158 Score: 96
Period size: 43 Copynumber: 2.0 Consensus size: 41
77376067 TGACTCTGAT
*
77376077 ATATGTGTACAAGTAAGACCCTGTCTGGGACAG-TGGCATCG
1 ATATGTGTACAAGTAAGACCCTGCCTGGGAC-GTTGGCATCG
*
77376118 ATATGTGGTTACAATTAAGACCAC-GCCTGGGACGTTGGCAT
1 ATATGT-G-TACAAGTAAGACC-CTGCCTGGGACGTTGGCAT
77376159 TGTACGATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
41 6 0.17
42 2 0.06
43 26 0.74
44 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATGTGTACAAGTAAGACCCTGCCTGGGACGTTGGCATCG
Found at i:77383832 original size:49 final size:49
Alignment explanation
Indices: 77383716--77384130 Score: 667
Period size: 47 Copynumber: 8.7 Consensus size: 49
77383706 AAGATTTTAA
77383716 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
77383764 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
77383813 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
77383862 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
77383909 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
77383958 GTGATGAATGTGAAAGTG--TATATA-GTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * *
77384004 GTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * *
77384051 GTGATGAATGTGAAAGTG--TATATATGTGATAGGGCC-AAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA-TGGCCGAT
*
77384098 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
77384131 TCCCGAAGGG
Statistics
Matches: 350, Mismatches: 6, Indels: 23
0.92 0.02 0.06
Matches are distributed among these distances:
44 1 0.00
45 3 0.01
46 42 0.12
47 135 0.39
48 48 0.14
49 121 0.35
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:77383839 original size:142 final size:142
Alignment explanation
Indices: 77383716--77384119 Score: 606
Period size: 142 Copynumber: 2.8 Consensus size: 142
77383706 AAGATTTTAA
77383716 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
77383780 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
65 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT-T-AT
77383845 AAGGCCTAATGGCCGAT
128 AA--CCTAATGGCCGAT
77383862 GTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
77383926 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGATAAG
66 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATTATAA-
77383990 GCCTAATGGCCGAT
130 -CCTAATGGCCGAT
* * *
77384004 GTGATGAATGTGAAGGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 GTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * *
77384068 G--TATATATGTGATAGGGCC-AAGTGGCCAACGTGATGGATGTGAAAGTGTATA
66 GTATATATATGTGATAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTGTATA
77384120 AATGTGATAA
Statistics
Matches: 247, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
139 2 0.01
140 44 0.18
142 81 0.33
144 25 0.10
145 77 0.31
146 18 0.07
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (142 bp):
GTGATGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATTATAAC
CTAATGGCCGAT
Found at i:77383924 original size:96 final size:96
Alignment explanation
Indices: 77383716--77384130 Score: 691
Period size: 96 Copynumber: 4.4 Consensus size: 96
77383706 AAGATTTTAA
77383716 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
77383780 TGTATATATATGTGATAAGGCCTAATGGCCGAT
66 TG--TATATATGTGATAAGGCCTAATGGCCGAT
77383813 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
77383878 TGTATATATGTGATAAGGCCTAATGGCCGAT
66 TGTATATATGTGATAAGGCCTAATGGCCGAT
77383909 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
77383974 TGTATATA-GTGATAAGGCCTAATGGCCGAT
66 TGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
77384004 GTGATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
77384067 TGTATATATGTGATAGGGCC-AAGTGGCCAAC
66 TGTATATATGTGATAAGGCCTAA-TGGCCGAT
*
77384098 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATATGTGATAAG
77384131 TCCCGAAGGG
Statistics
Matches: 305, Mismatches: 8, Indels: 13
0.94 0.02 0.04
Matches are distributed among these distances:
93 55 0.18
94 40 0.13
95 38 0.12
96 106 0.35
97 44 0.14
98 22 0.07
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:77386292 original size:40 final size:40
Alignment explanation
Indices: 77386248--77386479 Score: 419
Period size: 40 Copynumber: 5.8 Consensus size: 40
77386238 GAGAATTGAG
*
77386248 AGTGATGTATCCGGACTAAGTTCCGAAGATCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
77386288 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
77386328 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
77386368 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
77386408 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
77386448 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
77386480 ATCATGCTGG
Statistics
Matches: 188, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 188 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:77390175 original size:49 final size:49
Alignment explanation
Indices: 77390122--77390392 Score: 439
Period size: 49 Copynumber: 5.7 Consensus size: 49
77390112 GATTTTACGC
*
77390122 GATGAATGTGAATGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
77390171 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
77390220 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
77390269 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
* * * *
77390316 GATGAATGTGAAAGTG--TATATATGTGAT-AGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
*
77390362 GATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GATGAATGTGAAAGTGTATATATATGTGATAAG
77390393 TCCCGAAGGG
Statistics
Matches: 213, Mismatches: 6, Indels: 8
0.94 0.03 0.04
Matches are distributed among these distances:
46 36 0.17
47 62 0.29
48 2 0.01
49 113 0.53
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:77392860 original size:28 final size:28
Alignment explanation
Indices: 77392799--77392896 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
77392789 TCACAAATTG
** * *
77392799 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
77392828 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
77392856 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
77392884 GCACTAAGTGTGC
1 GCACTAAGTGTGC
77392897 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:77397489 original size:28 final size:28
Alignment explanation
Indices: 77397428--77397525 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
77397418 TCACAAATTG
** * *
77397428 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
77397457 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
77397485 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
77397513 GCACTAAGTGTGC
1 GCACTAAGTGTGC
77397526 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:77405156 original size:28 final size:28
Alignment explanation
Indices: 77405095--77405192 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
77405085 TCACAAATTG
** * *
77405095 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
77405124 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
77405152 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
77405180 GCACTAAGTGTGC
1 GCACTAAGTGTGC
77405193 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:77410741 original size:27 final size:27
Alignment explanation
Indices: 77410710--77410953 Score: 281
Period size: 27 Copynumber: 9.0 Consensus size: 27
77410700 TAGAATACTT
** *
77410710 TAGTTTACCAAATTAACAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * *
77410737 TAGTTTGTAAAATTACTAGAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
*
77410764 TGGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77410791 TGGTTTACAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * * *
77410818 TGGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77410845 TTGTTTATAAAATCACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
77410872 TGGTTTGTAAAATTGCCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77410899 TAGTTTGTAAAATTATCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77410926 TAGTTTGTAAAATTACCAAAATATCCC
1 TAGTTTATAAAATTACCAAAATACCCC
77410953 T
1 T
77410954 GATTTGTGAA
Statistics
Matches: 186, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 186 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:77410784 original size:54 final size:54
Alignment explanation
Indices: 77410719--77410967 Score: 320
Period size: 54 Copynumber: 4.6 Consensus size: 54
77410709 TTAGTTTACC
* * * * *
77410719 AAATTAACAAAATACCCCTAGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* **
77410773 AAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* * * * *
77410827 AAATTACTAAAATACCCTTTGTTTATAAAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* * *
77410881 AAATTGCCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
* *
77410935 AAATTACCAAAATATCCCT-GATTTGTGAAATTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTA
77410968 TTGAAATACC
Statistics
Matches: 170, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.01
54 169 0.99
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
Found at i:77410959 original size:27 final size:27
Alignment explanation
Indices: 77410719--77411039 Score: 276
Period size: 27 Copynumber: 11.9 Consensus size: 27
77410709 TTAGTTTACC
*
77410719 AAATTAACAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * * * *
77410746 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
* **
77410773 AAATTACCAAAATACCCCTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
77410800 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
77410827 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
* *
77410854 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
77410881 AAATTGCCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
77410908 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
77410935 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*** **
77410962 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
77410989 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
77411016 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
77411040 ACAGAATTAT
Statistics
Matches: 247, Mismatches: 40, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
26 6 0.02
27 235 0.95
28 6 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:77410960 original size:81 final size:81
Alignment explanation
Indices: 77410719--77410967 Score: 356
Period size: 81 Copynumber: 3.1 Consensus size: 81
77410709 TTAGTTTACC
* * *
77410719 AAATTAACAAAATACCCCTAGTTTGTAAAATTACTAGAATACCCTTGGTTTATAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTTTATAAAATTACCAAA
**
77410784 ATACCCCTGGTTTACA
66 ATACCCCTGGTTTGTA
* * *
77410800 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTTTATAAAATTACCAAA
77410865 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * *
77410881 AAATTGCCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCTTAGTTTATAAAATTACCAA
* * *
77410945 AATATCCCTGATTTGTG
65 AATACCCCTGGTTTGTA
77410962 AAATTA
1 AAATTA
77410968 TTGAAATACC
Statistics
Matches: 150, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 1 0.01
81 149 0.99
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTAGTTTATAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:77411108 original size:27 final size:27
Alignment explanation
Indices: 77411071--77411375 Score: 423
Period size: 27 Copynumber: 11.3 Consensus size: 27
77411061 CGATTTACAA
*
77411071 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
77411098 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77411125 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
77411152 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
77411178 AATTATCGCAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
77411205 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77411232 AATTACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
77411259 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
77411286 AAGTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
77411313 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
77411340 AATTACTAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
77411367 AATTACCGA
1 AATTACCGA
77411376 GACACCTTGT
Statistics
Matches: 245, Mismatches: 32, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 25 0.10
27 220 0.90
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:77412129 original size:27 final size:28
Alignment explanation
Indices: 77412072--77412147 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 28
77412062 ATTATCTGTT
* *
77412072 TCTGGTGGCTATGCCACAA-ATATATGT
1 TCTGGTGGCTCTGCCACAATATATATGA
*
77412099 TCTGGTGGCTCTGCCACAATATTTAT-A
1 TCTGGTGGCTCTGCCACAATATATATGA
* *
77412126 TCTGGTGACTCTGTCACAATAT
1 TCTGGTGGCTCTGCCACAATAT
77412148 CTGATAACTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 38 0.88
28 5 0.12
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAATATATATGA
Found at i:77412326 original size:6 final size:6
Alignment explanation
Indices: 77412287--77412412 Score: 91
Period size: 6 Copynumber: 20.3 Consensus size: 6
77412277 TTGCATTCAC
* * *
77412287 ATTCTG ATTTTAG ATTCTG -TTACTTG ATAT-TG ATTCTG ATTTTG ATTTTG
1 ATTCTG ATTCT-G ATTCTG ATT-C-TG AT-TCTG ATTCTG ATTCTG ATTCTG
* *
77412337 -TTACCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
77412387 ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
77412413 AATGTTTCTT
Statistics
Matches: 98, Mismatches: 8, Indels: 28
0.73 0.06 0.21
Matches are distributed among these distances:
5 7 0.07
6 74 0.76
7 12 0.12
8 4 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:77412352 original size:31 final size:31
Alignment explanation
Indices: 77412287--77412367 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
77412277 TTGCATTCAC
*
77412287 ATTCTGATTTTAGATTCTGTTACTTGATATTG
1 ATTCTGATTTT-GATTCTGTTACCTGATATTG
*
77412319 ATTCTGATTTTGATTTTGTTACCTGAT-TCTG
1 ATTCTGATTTTGATTCTGTTACCTGATAT-TG
*
77412350 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTG
77412368 ATTCTGTCAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
30 1 0.02
31 32 0.73
32 11 0.25
ACGTcount: A:0.19, C:0.12, G:0.16, T:0.53
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATATTG
Found at i:77412410 original size:37 final size:37
Alignment explanation
Indices: 77412317--77412403 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 37
77412307 TACTTGATAT
* * * *
77412317 TGATTCTGATTTTGATTTTGTTACCTGATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTC
77412354 TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTC
77412391 TGATTCTGATTCT
1 TGATTCTGATTCT
77412404 AGTTCTGATA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTAATTCTGATTC
Found at i:77418208 original size:2 final size:2
Alignment explanation
Indices: 77418201--77418228 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
77418191 TGTGGTAAGA
77418201 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77418229 GAAGAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77418767 original size:9 final size:10
Alignment explanation
Indices: 77418739--77418767 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
77418729 CAAAGCTATG
77418739 GTATAATTGA
1 GTATAATTGA
77418749 GTATAATTGA
1 GTATAATTGA
77418759 GTA-AATTGA
1 GTATAATTGA
77418768 AAGTAGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (10 bp):
GTATAATTGA
Found at i:77423833 original size:41 final size:42
Alignment explanation
Indices: 77423757--77423843 Score: 140
Period size: 41 Copynumber: 2.0 Consensus size: 42
77423747 ATTTTGATGA
*
77423757 GATTGATAGTAGGAATGAGGAGTATAAACTCCTCAAACCACCAT
1 GATTGATAGCAGGAAT--GGAGTATAAACTCCTCAAACCACCAT
77423801 GATTGATAGCAGGAAT-GAGTATAAACTCCTCAAACCACCAT
1 GATTGATAGCAGGAATGGAGTATAAACTCCTCAAACCACCAT
77423842 GA
1 GA
77423844 CCATTCACTG
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
41 27 0.64
44 15 0.36
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (42 bp):
GATTGATAGCAGGAATGGAGTATAAACTCCTCAAACCACCAT
Found at i:77431702 original size:50 final size:47
Alignment explanation
Indices: 77431637--77431763 Score: 143
Period size: 47 Copynumber: 2.6 Consensus size: 47
77431627 CGAGATGTGT
* *
77431637 TAGTATAAGACCATGTCTGGGACATGGCATTGGCACGGAT-ATGTGA-GAG
1 TAGTGTAAGACCATGTCTGGGACATGGCATTCG-AC--ATGATG-GATGAG
* *
77431686 CTAGTGTAAGACCATGTCTAGGACATGGCA-TCGACTTGATGGATGAG
1 -TAGTGTAAGACCATGTCTGGGACATGGCATTCGACATGATGGATGAG
77431733 TCAGTGTAAGACCATGTCTGGGACATGGCAT
1 T-AGTGTAAGACCATGTCTGGGACATGGCAT
77431764 CGGTATTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
46 4 0.06
47 33 0.49
48 2 0.03
49 2 0.03
50 27 0.40
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATTCGACATGATGGATGAG
Done.