Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 269 of 427
Found at i:77433750 original size:27 final size:27
Alignment explanation
Indices: 77433720--77433810 Score: 146
Period size: 27 Copynumber: 3.4 Consensus size: 27
77433710 GGGGCAAAAT
* *
77433720 GGTAATTTTACCCCACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77433747 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77433774 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77433801 GATAATTCTA
1 GGTAATTCTA
77433811 TAACTTATCC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77440096 original size:29 final size:29
Alignment explanation
Indices: 77440064--77440205 Score: 97
Period size: 29 Copynumber: 4.9 Consensus size: 29
77440054 ATTTAAGCCC
*
77440064 GCACACACAGTGCCATATCCTTCGAGCTT
1 GCACACACAGTGCCATATCCTTCCAGCTT
* * **
77440093 GCACACCCAGTGCCGTATTTTTCCAGCTT
1 GCACACACAGTGCCATATCCTTCCAGCTT
* * * *
77440122 GCACACATAGTGTCATAT-TTTCCAGCAT
1 GCACACACAGTGCCATATCCTTCCAGCTT
** * ** **
77440150 GCACACTTAGTGCCTTATATTTCCAGCAC
1 GCACACACAGTGCCATATCCTTCCAGCTT
** **
77440179 GCACACTTAGTGCCATATATTTCCAGC
1 GCACACACAGTGCCATATCCTTCCAGC
77440206 ACGCACACTT
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 24 0.25
29 73 0.75
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACACAGTGCCATATCCTTCCAGCTT
Found at i:77440173 original size:57 final size:58
Alignment explanation
Indices: 77440063--77440221 Score: 185
Period size: 57 Copynumber: 2.8 Consensus size: 58
77440053 AATTTAAGCC
* ** * * ** * *
77440063 CGCACACACAGTGCCATATCCTTCGAGCTTGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCATGCACACTTAGTGCCGTATATTTCCAGCA
* * *
77440121 TGCACACATAGTGTCATAT-TTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCATGCACACTTAGTGCCGTATATTTCCAGCA
* *
77440178 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCATGCACACTTAGTGCC
77440222 AATCTCGTCA
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
57 46 0.54
58 39 0.46
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCATGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:77440206 original size:29 final size:29
Alignment explanation
Indices: 77440101--77440222 Score: 165
Period size: 29 Copynumber: 4.2 Consensus size: 29
77440091 TTGCACACCC
* * ** *
77440101 AGTGCCGTATTTTTCCAGCTTGCACACAT
1 AGTGCCATATATTTCCAGCACGCACACTT
* *
77440130 AGTGTCATAT-TTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
*
77440158 AGTGCCTTATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
77440187 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
77440216 AGTGCCA
1 AGTGCCA
77440223 ATCTCGTCAC
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
28 24 0.29
29 60 0.71
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCACGCACACTT
Found at i:77443566 original size:27 final size:26
Alignment explanation
Indices: 77443519--77443569 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
77443509 TGAGGCTGCC
*
77443519 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
77443545 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
77443570 TTCAGTGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:77444251 original size:27 final size:27
Alignment explanation
Indices: 77444221--77444337 Score: 171
Period size: 27 Copynumber: 4.3 Consensus size: 27
77444211 GGCAAAATGG
* * * *
77444221 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
77444248 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
77444275 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
77444302 TAATTCTACCATACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
77444329 TAATTCTAC
1 TAATTCTAC
77444338 AACTTATCCA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:77444266 original size:54 final size:54
Alignment explanation
Indices: 77444208--77444320 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
77444198 TTAACACCCT
* * * *
77444208 AGGGGCAAAAT-GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
1 AGGGG-AAAATCGATAATTCTACCCCACAAGGGTATCTCAATAATTCTACCATAC
* ** * * *
77444262 AGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAATAATTCTACCATAC
1 AGGGGAAAATCGATAATTCTACCCCACAAGGGTATCTCAATAATTCTACCATAC
77444316 AGGGG
1 AGGGG
77444321 TATTTCGGTA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.04
54 46 0.96
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (54 bp):
AGGGGAAAATCGATAATTCTACCCCACAAGGGTATCTCAATAATTCTACCATAC
Found at i:77448686 original size:37 final size:37
Alignment explanation
Indices: 77448635--77448710 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
77448625 ATGACCGATG
*
77448635 TTGTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCC--ATGAGATGTGGCTTATAATGAT
77448672 TTGTTGT-ATGTAGCCATGAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCATGAGATGTGGCTTATAATGAT
77448709 TT
1 TT
77448711 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 3 0.09
36 4 0.11
37 28 0.80
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (37 bp):
TTGTTGTGATTAGCCATGAGATGTGGCTTATAATGAT
Found at i:77450897 original size:5 final size:5
Alignment explanation
Indices: 77450889--77450917 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
77450879 GTAATATGTT
77450889 ATATG ATATG ATATG ATATG ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATAT
77450918 ATCATTGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:77452223 original size:42 final size:43
Alignment explanation
Indices: 77452171--77452293 Score: 126
Period size: 42 Copynumber: 2.9 Consensus size: 43
77452161 GGACTACCGA
* *
77452171 GATTCCGTATAAGACCATATCTGGGATATGGCATCGGTAT-AT
1 GATTTCGTATAAGACCATATCTGGGATATGGCATCGATATGAT
* * *
77452213 GATTTCGTATAACACCATGT-TAGGGACATGGCATCGATATGAT
1 GATTTCGTATAAGACCATATCT-GGGATATGGCATCGATATGAT
* * * * *
77452256 -ATTTCATGTAAGACCATATCTAGGATATGACATTGATA
1 GATTTCGTATAAGACCATATCTGGGATATGGCATCGATA
77452294 CGGAACTAAG
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
41 1 0.02
42 61 0.94
43 3 0.05
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (43 bp):
GATTTCGTATAAGACCATATCTGGGATATGGCATCGATATGAT
Found at i:77453956 original size:32 final size:33
Alignment explanation
Indices: 77453902--77454002 Score: 89
Period size: 33 Copynumber: 3.1 Consensus size: 33
77453892 TTTCTAATGG
* * * * *
77453902 ACCATTCCTTTTCC-AGTTGTACACTTAAGGTGT
1 ACCATTCC-TTTCCAAATGGTACACGTAAAGTAT
77453935 A-CATTCCTTTCCAAATGGTACACGTAAAGTAT
1 ACCATTCCTTTCCAAATGGTACACGTAAAGTAT
* * * **
77453967 ACCTTTCCTTTTCATATGGTACACACAAAGTAT
1 ACCATTCCTTTCCAAATGGTACACGTAAAGTAT
77454000 ACC
1 ACC
77454003 TAACCTTTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
31 5 0.09
32 21 0.38
33 30 0.54
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.35
Consensus pattern (33 bp):
ACCATTCCTTTCCAAATGGTACACGTAAAGTAT
Found at i:77454010 original size:33 final size:33
Alignment explanation
Indices: 77453940--77454047 Score: 103
Period size: 33 Copynumber: 3.3 Consensus size: 33
77453930 GGTGTACATT
* ** **
77453940 CCTTTCCAAATGGTACACGTAAAGTATACCTTT
1 CCTTTTCAAATGGTACACACAAAGTATACCTAA
*
77453973 CCTTTTCATATGGTACACACAAAGTATACCTAA
1 CCTTTTCAAATGGTACACACAAAGTATACCTAA
** * * *
77454006 CC-TTTCAGGT-GTACACACAAGGTGTACATAA
1 CCTTTTCAAATGGTACACACAAAGTATACCTAA
77454037 CCTTTTCAAAT
1 CCTTTTCAAAT
77454048 TAAACCATTT
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
31 20 0.33
32 12 0.20
33 29 0.48
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (33 bp):
CCTTTTCAAATGGTACACACAAAGTATACCTAA
Found at i:77455706 original size:44 final size:43
Alignment explanation
Indices: 77455574--77455732 Score: 130
Period size: 42 Copynumber: 3.7 Consensus size: 43
77455564 CAATGCCGAC
* * * * *
77455574 GTCCCAGACGTGGTCTTACATGT-AATTCAGTATTGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCA-AATCGATGCCTGT
* * * *
77455617 GTCCCACACAAGGTCTTATACG-AAA-TCAGATACGATGCC-GAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCTG-T
77455659 GTCCCAGACATGGTCTTACACGTAAATTTCAAATCGATGCCTGT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCCTGT
* * *
77455703 GTCCCAAACACGATCTTACAC-TATAATTCA
1 GTCCCAGACATGGTCTTACACGTA-AATTCA
77455733 GTTCAATACC
Statistics
Matches: 93, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 28 0.30
44 28 0.30
45 6 0.06
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCTGT
Found at i:77461232 original size:79 final size:81
Alignment explanation
Indices: 77461131--77461315 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
77461121 ACGACTCGCT
** * *
77461131 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
77461194 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
77461211 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
77461275 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
77461291 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77461316 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:77461315 original size:40 final size:39
Alignment explanation
Indices: 77461124--77461315 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
77461114 GGATATAACG
* ** * *
77461124 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
77461164 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
77461204 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
77461243 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
77461283 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
77461316 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:77469230 original size:79 final size:81
Alignment explanation
Indices: 77469129--77469313 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
77469119 ACGACTCGCT
** * *
77469129 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
77469192 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
77469209 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
77469273 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
77469289 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77469314 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:77469313 original size:40 final size:39
Alignment explanation
Indices: 77469122--77469313 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
77469112 GGATATAACG
* ** * *
77469122 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
77469162 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
77469202 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
77469241 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
77469281 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
77469314 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:77479501 original size:40 final size:41
Alignment explanation
Indices: 77479456--77479622 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
77479446 CGGAATATAA
*
77479456 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
77479496 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77479536 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77479576 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
77479615 CCGGATAT
1 CCGGATAT
77479623 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77480471 original size:17 final size:19
Alignment explanation
Indices: 77480448--77480493 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
77480438 AAGAAGCATG
77480448 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
77480466 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
77480484 AATCATGCTC
1 AATCATGCTC
77480494 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:77484951 original size:28 final size:29
Alignment explanation
Indices: 77484868--77485026 Score: 171
Period size: 29 Copynumber: 5.5 Consensus size: 29
77484858 GTGACGAGAT
77484868 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77484897 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77484926 TGGCACTAAGTGT-CATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
77484954 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
77484983 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
77485012 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
77485027 GAAATCGAGT
Statistics
Matches: 109, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
28 27 0.25
29 81 0.74
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:77484985 original size:57 final size:58
Alignment explanation
Indices: 77484864--77484997 Score: 166
Period size: 57 Copynumber: 2.3 Consensus size: 58
77484854 TACGGTGACG
* *
77484864 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
77484921 ATATATGGCACTAAGTGT-CATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
77484978 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
77484998 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
57 50 0.77
58 15 0.23
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:77491911 original size:34 final size:35
Alignment explanation
Indices: 77491868--77491934 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
77491858 AGACTATGAG
*
77491868 TAAGACCATATTTGGGATA-TGGCATCAATACGTA
1 TAAGACCATATCTGGGATATTGGCATCAATACGTA
*
77491902 TAAGACCATATCTGGGATATTGGCATCGATACG
1 TAAGACCATATCTGGGATATTGGCATCAATACG
77491935 AGATTACATG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 18 0.60
35 12 0.40
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (35 bp):
TAAGACCATATCTGGGATATTGGCATCAATACGTA
Found at i:77497394 original size:27 final size:28
Alignment explanation
Indices: 77497356--77497426 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 28
77497346 AAAATTGTAC
* * *
77497356 AGCACTAAGTGTGCGAGTTG-ATTCTAT
1 AGCACTAAGTGTGCGAGCTGAAATATAT
77497383 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTG-AAATATAT
77497412 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77497427 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 19 0.49
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTGAAATATAT
Found at i:77497422 original size:29 final size:29
Alignment explanation
Indices: 77497327--77497426 Score: 114
Period size: 27 Copynumber: 3.5 Consensus size: 29
77497317 GACAAGATTG
* * * *
77497327 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTGAAAA-TATATA
* *
77497357 GCACTAAGTGTGCGAGTTG--ATTCTATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
*
77497384 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTGAAAATATATA
77497413 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77497427 GATTCACTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
27 22 0.37
28 1 0.02
29 20 0.33
30 17 0.28
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTGAAAATATATA
Found at i:77499091 original size:32 final size:32
Alignment explanation
Indices: 77499055--77499118 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
77499045 TTTGGTTGCC
77499055 TAAGTATACCATTGTTTATGCCATTGAATTTG
1 TAAGTATACCATTGTTTATGCCATTGAATTTG
77499087 TAAGTATACCATTGTTTATGCCATTGAATTTG
1 TAAGTATACCATTGTTTATGCCATTGAATTTG
77499119 CGTATGTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (32 bp):
TAAGTATACCATTGTTTATGCCATTGAATTTG
Found at i:77500675 original size:40 final size:41
Alignment explanation
Indices: 77500620--77500717 Score: 144
Period size: 41 Copynumber: 2.4 Consensus size: 41
77500610 TTTCCAGCTT
* *
77500620 AATAATTCACCTATTTTACCT-ACTGGCAGCCTAACATGTG
1 AATAATTCACCTATTTTACATAACTGGCAGCCTAACATGCG
* * *
77500660 AATAATTCACCTATTTTAGATAACTGGCGGCCTAACTTGCG
1 AATAATTCACCTATTTTACATAACTGGCAGCCTAACATGCG
77500701 AATAATTCACCTATTTT
1 AATAATTCACCTATTTT
77500718 GAGTGTTAGG
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
40 19 0.37
41 33 0.63
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (41 bp):
AATAATTCACCTATTTTACATAACTGGCAGCCTAACATGCG
Found at i:77505804 original size:43 final size:43
Alignment explanation
Indices: 77505718--77505805 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 43
77505708 CTAGGGTAAA
* * *
77505718 TTCAACAACCCATGTTTATCTTCTCCTTTTTTTAAATTCTTTT
1 TTCAACAACCCAAGATTATCTTCTCCTTTTTTCAAATTCTTTT
* * *
77505761 TTCAACAACCCAAGATTATCTTCTTCTTTTTTCAATTTTTTTT
1 TTCAACAACCCAAGATTATCTTCTCCTTTTTTCAAATTCTTTT
77505804 TT
1 TT
77505806 GGGATAAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.55
Consensus pattern (43 bp):
TTCAACAACCCAAGATTATCTTCTCCTTTTTTCAAATTCTTTT
Found at i:77511180 original size:18 final size:18
Alignment explanation
Indices: 77511150--77511204 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
77511140 TTTTGGTTAC
*
77511150 TTAT-TTTTGGGTTTTAA
1 TTATATTTTAGGTTTTAA
77511167 TTATATTTTAGGTTTTAA
1 TTATATTTTAGGTTTTAA
77511185 TTATATTTTA-GTTTCTAA
1 TTATATTTTAGGTTT-TAA
77511203 TT
1 TT
77511205 TGAACATCCC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
17 8 0.23
18 27 0.77
ACGTcount: A:0.24, C:0.02, G:0.11, T:0.64
Consensus pattern (18 bp):
TTATATTTTAGGTTTTAA
Found at i:77517829 original size:2 final size:2
Alignment explanation
Indices: 77517822--77517852 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
77517812 TCATGACATG
77517822 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77517853 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77534376 original size:40 final size:38
Alignment explanation
Indices: 77534327--77534434 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
77534317 ATCACGATTT
*
77534327 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
77534367 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
77534407 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
77534435 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:77542112 original size:70 final size:70
Alignment explanation
Indices: 77542018--77542178 Score: 288
Period size: 70 Copynumber: 2.3 Consensus size: 70
77542008 CGATTTGTCT
77542018 CGTAGCTC-CTTGTCTACATGGTGTCCATCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACAT-GTGTCCATCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
77542082 CTTTCA
65 CTTTCA
* *
77542088 CGTAGCTCTCTTGTCTACATGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATC
1 CGTAGCTCTCTTGTCTACATGTGTCCATCACTTGGAATCACGCATGCGACCCAGCTACATTTATC
77542153 TTTCA
66 TTTCA
77542158 CGTAGCTCTCTTGTCTACATG
1 CGTAGCTCTCTTGTCTACATG
77542179 GGATACATCT
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
70 77 0.88
71 11 0.12
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGTGTCCATCACTTGGAATCACGCATGCGACCCAGCTACATTTATC
TTTCA
Found at i:77545731 original size:40 final size:39
Alignment explanation
Indices: 77545686--77545814 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
77545676 CGGAATACAA
77545686 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
77545726 CCGGATAGAACGACTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
* * * *
77545765 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
77545805 CCGGATATAA
1 CCGGATATAA
77545815 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.48
40 40 0.52
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:77553782 original size:40 final size:39
Alignment explanation
Indices: 77553737--77553866 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
77553727 CGGAATACAA
77553737 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
77553777 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
77553817 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
77553857 CCGGATATAA
1 CCGGATATAA
77553867 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:77560703 original size:65 final size:65
Alignment explanation
Indices: 77560622--77560771 Score: 174
Period size: 65 Copynumber: 2.3 Consensus size: 65
77560612 GCCATATCAA
* * * * * * * *
77560622 GACACTCACAAAGAGCTTCTTTTGTGTCTACAACATATGCAAGATCACAATCTATTATAAAATAG
1 GACACTCACAAAGAGCTGCGTTTGTGTCCACAACATATGCAAGACCACAACCGATCATAAAACAG
* * * *
77560687 GACACTCACAAAGAGCTGCGTTTGTGTCCGCAATATATGCAGGACCACAACCGATCATATAACAG
1 GACACTCACAAAGAGCTGCGTTTGTGTCCACAACATATGCAAGACCACAACCGATCATAAAACAG
* *
77560752 GACGCTCACAAAGAGTTGCG
1 GACACTCACAAAGAGCTGCG
77560772 GTAGTCTACA
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 71 1.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (65 bp):
GACACTCACAAAGAGCTGCGTTTGTGTCCACAACATATGCAAGACCACAACCGATCATAAAACAG
Found at i:77570904 original size:22 final size:22
Alignment explanation
Indices: 77570879--77570921 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
77570869 GGCTATGCGA
77570879 TCTGAGCTCATGAGTTATGTGG
1 TCTGAGCTCATGAGTTATGTGG
77570901 TCTGAGCTCATGAGTTATGTG
1 TCTGAGCTCATGAGTTATGTG
77570922 ACACATGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.30, T:0.37
Consensus pattern (22 bp):
TCTGAGCTCATGAGTTATGTGG
Found at i:77574368 original size:46 final size:46
Alignment explanation
Indices: 77574224--77574404 Score: 172
Period size: 46 Copynumber: 3.9 Consensus size: 46
77574214 GGGTAAGGTG
* * * * *
77574224 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACCTCGTA
1 CCGATG-CATGTCCCAAACATGGTCTTACACTGGCTCTCATCTCATA
* * **
77574271 GCCGATGCATGTCCCAAACAT-GTCTTACACTGGCT-TACGTCCCGAGG
1 -CCGATGCATGTCCCAAACATGGTCTTACACTGGCTCT-CATCTC-ATA
77574318 CCGATGCATGTCCCAAACAT-GTCTTACACTGGCTCTCATCTCAATA
1 CCGATGCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTC-ATA
* *
77574364 CCGATCTCATGT-CCAGGACATGGTCTTACACTGGCTCTCAT
1 CCGAT-GCATGTCCCA-AACATGGTCTTACACTGGCTCTCAT
77574405 ATTGTGGTCG
Statistics
Matches: 112, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
45 1 0.01
46 63 0.56
47 23 0.21
48 25 0.22
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTCATA
Found at i:77579025 original size:23 final size:22
Alignment explanation
Indices: 77578986--77579033 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
77578976 TACTCTACAA
77578986 AAATATATAAAGAATTTATTCTC
1 AAATATATAAAGAATTT-TTCTC
* *
77579009 AAATAT-TAAATATATTTTTTTC
1 AAATATATAAAGA-ATTTTTCTC
77579031 AAA
1 AAA
77579034 ATAATAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (22 bp):
AAATATATAAAGAATTTTTCTC
Found at i:77582075 original size:36 final size:36
Alignment explanation
Indices: 77581999--77582116 Score: 141
Period size: 36 Copynumber: 3.3 Consensus size: 36
77581989 CTCTCTGTTT
*
77581999 TGGTGTGTTTCGGTTGGATTAGCTCTT-TGGAGCCA-C
1 TGGTGTGTTTCGGATGGATTAGCTCTTAT-GAG-CATC
*
77582035 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATT
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
* * * *
77582071 TGGTGTGTTTCAGACGGACTAGCTTTTATGAGCATC
1 TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
*
77582107 TAGTGTGTTT
1 TGGTGTGTTT
77582117 TGGTGGGATT
Statistics
Matches: 72, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
35 2 0.03
36 69 0.96
37 1 0.01
ACGTcount: A:0.15, C:0.14, G:0.31, T:0.41
Consensus pattern (36 bp):
TGGTGTGTTTCGGATGGATTAGCTCTTATGAGCATC
Found at i:77585436 original size:30 final size:30
Alignment explanation
Indices: 77585381--77585511 Score: 180
Period size: 30 Copynumber: 4.5 Consensus size: 30
77585371 ATAGTGAATC
*
77585381 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
77585410 CGCACACTTAGTGCTATATAATTTTCAACT
1 CGCACACTTAGTGCTATATAATTTTCAACT
77585440 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
77585468 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
77585498 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77585512 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.25
29 19 0.21
30 47 0.51
31 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:77585491 original size:58 final size:58
Alignment explanation
Indices: 77585380--77585511 Score: 185
Period size: 58 Copynumber: 2.3 Consensus size: 58
77585370 TATAGTGAAT
* * * *
77585380 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAAC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
77585439 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
77585497 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77585512 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 43 0.66
59 20 0.31
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:77588904 original size:23 final size:21
Alignment explanation
Indices: 77588843--77588898 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
77588833 TTCCTATGGT
*
77588843 CACACGGGCGTGTGCCCTGAC
1 CACACGGACGTGTGCCCTGAC
*
77588864 CACATGGACGTGTGCCCTGAC
1 CACACGGACGTGTGCCCTGAC
77588885 CACACGGACGTGTG
1 CACACGGACGTGTG
77588899 TGCCCTTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (21 bp):
CACACGGACGTGTGCCCTGAC
Found at i:77592302 original size:40 final size:40
Alignment explanation
Indices: 77592124--77592302 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
77592114 GAATCACGTA
* * **
77592124 CCTTCGGAATTTAA-CCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATG
* * *
77592163 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
*
77592203 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
* *
77592243 CCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAA-G
1 CCTTCGGGACTTAACCCGGATATAGTAAC-TCGCACAAATG
*
77592283 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
77592303 CATCATTCGA
Statistics
Matches: 122, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
39 11 0.09
40 103 0.84
41 8 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:77605391 original size:15 final size:15
Alignment explanation
Indices: 77605371--77605399 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77605361 TTCTTTCGTT
77605371 TCTGGTCAATAAACC
1 TCTGGTCAATAAACC
77605386 TCTGGTCAATAAAC
1 TCTGGTCAATAAAC
77605400 TGCGATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (15 bp):
TCTGGTCAATAAACC
Found at i:77609588 original size:39 final size:39
Alignment explanation
Indices: 77609527--77609801 Score: 417
Period size: 39 Copynumber: 7.1 Consensus size: 39
77609517 GAAATGTGTA
* *
77609527 TGGAAATATATCCGGGCTAAAGACCTGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * * *
77609566 TAGAAATATATCCGGGCCAAAGACACGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
77609605 TGGAAATGTATCCGGGCTAAATACCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
77609644 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
* * * *
77609683 TGGAAATATATCCGAGCCAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
77609722 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
77609761 TGGAAATGTATCCGGGCTAAAG-TCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
77609799 TGG
1 TGG
77609802 TAATAAAATT
Statistics
Matches: 213, Mismatches: 23, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
38 18 0.08
39 195 0.92
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:77609733 original size:117 final size:117
Alignment explanation
Indices: 77609527--77609806 Score: 481
Period size: 117 Copynumber: 2.4 Consensus size: 117
77609517 GAAATGTGTA
* * * * *
77609527 TGGAAATATATCCGGGCTAAAGACCTGCAGGCTTTGTGCTAGAAATATATCCGGGCCAAAGACAC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGAGCCAAAGACAC
*
77609592 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAATACCCGCAGGCTTTGTGC
66 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
77609644 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGAGCCAAAGACCC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGAGCCAAAGACAC
77609709 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
66 GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
*
77609761 TGGAAATGTATCCGGGCTAAAGT-CCGCAGGCTTTGTGCTGGTAATA
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATA
77609807 AAATTTCGGG
Statistics
Matches: 155, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
116 22 0.14
117 133 0.86
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.24
Consensus pattern (117 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGAAATATATCCGAGCCAAAGACAC
GCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTTGTGC
Found at i:77612758 original size:40 final size:40
Alignment explanation
Indices: 77612650--77612819 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
77612640 CGGGATTTAA
* * * * *
77612650 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
77612690 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77612730 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77612770 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
77612810 CCGGATATAT
1 CCGGATATAT
77612820 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:77620799 original size:40 final size:40
Alignment explanation
Indices: 77620754--77620920 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
77620744 CGGAATATAA
77620754 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
77620794 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
77620834 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
77620874 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
77620913 CCGGATAT
1 CCGGATAT
77620921 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:77620904 original size:80 final size:79
Alignment explanation
Indices: 77620754--77620920 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
77620744 CGGAATATAA
* *
77620754 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
77620819 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
77620834 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
77620896 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
77620913 CCGGATAT
1 CCGGATAT
77620921 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:77621768 original size:17 final size:19
Alignment explanation
Indices: 77621745--77621790 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
77621735 AAGAAGCATG
77621745 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
77621763 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
77621781 AATCATGCTC
1 AATCATGCTC
77621791 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:77625830 original size:45 final size:45
Alignment explanation
Indices: 77625780--77625867 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
77625770 CCAAAACATG
77625780 TGTCACATACAGCATGAACTCAGACCACAACTCAATGAGTTCAAA
1 TGTCACATACAGCATGAACTCAGACCACAACTCAATGAGTTCAAA
* * * * *
77625825 TGTCACATATATCTTGAACTCAGACCATAACTTAATGAGTTCA
1 TGTCACATACAGCATGAACTCAGACCACAACTCAATGAGTTCA
77625868 GGTCACATAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (45 bp):
TGTCACATACAGCATGAACTCAGACCACAACTCAATGAGTTCAAA
Found at i:77627469 original size:30 final size:30
Alignment explanation
Indices: 77627425--77627485 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 30
77627415 TTCAGGAATG
77627425 AACACGGGTCGGTTTGAATCAAAAATAAAA
1 AACACGGGTCGGTTTGAATCAAAAATAAAA
77627455 AACA-GGGATCGGTTTGAATCAAAAATAAAA
1 AACACGGG-TCGGTTTGAATCAAAAATAAAA
77627485 A
1 A
77627486 GTTTGGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 3 0.10
30 27 0.90
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (30 bp):
AACACGGGTCGGTTTGAATCAAAAATAAAA
Found at i:77631116 original size:18 final size:20
Alignment explanation
Indices: 77631093--77631129 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
77631083 CGGGTCGCAC
77631093 GCCCATGTA-AC-AACCTGT
1 GCCCATGTAGACAAACCTGT
77631111 GCCCATGTAGACAAACCTG
1 GCCCATGTAGACAAACCTG
77631130 CACCAAAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.19
Consensus pattern (20 bp):
GCCCATGTAGACAAACCTGT
Found at i:77636546 original size:1 final size:1
Alignment explanation
Indices: 77636542--77636567 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
77636532 GTTTTTGCTG
77636542 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
77636568 CTCCTTTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:77638391 original size:1 final size:1
Alignment explanation
Indices: 77638385--77638410 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
77638375 CTGATTCTGG
77638385 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
77638411 GCATAAACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:77642427 original size:22 final size:23
Alignment explanation
Indices: 77642380--77642428 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
77642370 TCTCGAGTCG
* *
77642380 TTTCAAGTTATTTTTTATGCTCA
1 TTTCAAGTTATTTTTTATGATAA
*
77642403 TTTCAAGTTTTTTTTTAT-ATAA
1 TTTCAAGTTATTTTTTATGATAA
77642425 TTTC
1 TTTC
77642429 GGGTTCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.61
Consensus pattern (23 bp):
TTTCAAGTTATTTTTTATGATAA
Found at i:77660163 original size:53 final size:53
Alignment explanation
Indices: 77660078--77660183 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
77660068 TGCTCCGTAG
77660078 ATATCGGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
1 ATATCGGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
* *
77660131 ATATTGGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCTAGATTAAGC
1 ATATCGGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
77660184 CCAATATGAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (53 bp):
ATATCGGTCTGATCCTTCACATGTGATTAGATCATCTAAGATCGAGATTAAGC
Found at i:77664393 original size:44 final size:44
Alignment explanation
Indices: 77664326--77664876 Score: 250
Period size: 44 Copynumber: 12.0 Consensus size: 44
77664316 TCTGGCGAAT
* *
77664326 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * * *
77664370 CTTATCTCCCTAAAGTTGTAGTGGAGTAG-GTAGAAGCTAGCAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTA-AAGCTA-CAAAC
* * * *
77664415 CTTATTTCCCTAAGGTTACAGTGGAACAGATTAAAGTTGTCAAAGTACAAAC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA---G-C----TACAAAC
* * * *
77664467 CTTATCTCCCTAAAGTTGCAGTGGAGTAGATCGAAGTTAGGCTACCAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGAT-TAA---A-GCTACAAAC
* * * * * * *
77664516 CTTATCTTCCTGAAGTTGTAGTGGATCAAATTAAAGCCACTAATC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTAC-AAAC
* * *
77664561 C-TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGCGACAAATC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAA-C
* * * * *
77664605 C-TATAC-CTCTGAAGTTGCAGTAGGTCAGATTAAATCTACCATAACTACAAAC
1 CTTAT-CTCCCTAAAGTTGCAGT-GG--AG--CAGAT-TA--A-AGCTACAAAC
* * * * * * * *
77664657 CTTATCTCCTTGAAGTTGC-GATAGGAGCAGGTTGAAGTTATAGAT
1 CTTATCTCCCTAAAGTTGCAG-T-GGAGCAGATTAAAGCTACAAAC
* * * * * * *
77664702 CTTATCTCCCTGAAGTTGCAATGAAGTAGATCAAAGATAGCAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAAC
* * * * *
77664747 CTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAA-C
* * * * * **
77664792 C-TATTTCCTTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
* * *
77664835 CTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCGACAA
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAA
77664877 GTTGCAAATC
Statistics
Matches: 379, Mismatches: 94, Indels: 68
0.70 0.17 0.13
Matches are distributed among these distances:
43 5 0.01
44 166 0.44
45 94 0.25
46 3 0.01
47 2 0.01
48 4 0.01
49 35 0.09
50 2 0.01
51 2 0.01
52 35 0.09
53 29 0.08
54 1 0.00
56 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAAC
Found at i:77664656 original size:190 final size:190
Alignment explanation
Indices: 77664323--77664675 Score: 416
Period size: 190 Copynumber: 1.9 Consensus size: 190
77664313 TGTTCTGGCG
*
77664323 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAACCTTATCTCCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCACAAACCTTATCTCCCTAAAGTTG
* * * *
77664388 TAGTGGAGTAGGTAGAAGCTAGCAAATCTTATTTCCCTAAGGTTACAGTGGAACAGATTAAAGTT
66 CAGTGGAGTAGGTAGAAGCGAGCAAATCCTATTACCCTAAGGTTACAGTGGAACAGATTAAAGTT
** *
77664453 GTCAAAGTACAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGATCGAAGTTAGGCTACC
131 ACCAAACTACAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGATCGAAGTTAGGCTACC
* * * * *
77664513 AATCTTATCTTCCTGAAGTTGTAGTGGATCAAATTAAAGCCACTAATCC-TATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCAC-AAACCTTATCTCCCTAAAGTT
* * *
77664577 GCAGTGGAG-CGGATTA-AAGCGA-CAAATCCTA-TACCTCTGAA-GTTGCAGTAGG-TCAGATT
65 GCAGTGGAGTAGG--TAGAAGCGAGCAAATCCTATTACC-CT-AAGGTTACAGT-GGAACAGATT
* *
77664636 AAA-TCTACCATAACTACAAACCTTATCTCCTTGAAGTTGC
125 AAAGT-TACCA-AACTACAAACCTTATCTCCCTAAAGTTGC
77664676 GATAGGAGCA
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
188 4 0.03
189 31 0.23
190 96 0.70
191 6 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (190 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCACAAACCTTATCTCCCTAAAGTTG
CAGTGGAGTAGGTAGAAGCGAGCAAATCCTATTACCCTAAGGTTACAGTGGAACAGATTAAAGTT
ACCAAACTACAAACCTTATCTCCCTAAAGTTGCAGTGGAGTAGATCGAAGTTAGGCTACC
Found at i:77664900 original size:51 final size:51
Alignment explanation
Indices: 77664824--77664920 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
77664814 GAGCAGATTG
*
77664824 AAGTTACAAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCGAC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCGAC
* * * *
77664875 AAGTTGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAA
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAA
77664921 ACAATAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (51 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCGAC
Found at i:77664928 original size:139 final size:134
Alignment explanation
Indices: 77664663--77664930 Score: 362
Period size: 133 Copynumber: 2.0 Consensus size: 134
77664653 AAACCTTATC
* *
77664663 TCCTTGAAGTTGCGATAGGAGCAGGTTGAAGTTATAGATCTTATCTCCCTGAAGTTGCAATGAAG
1 TCCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGAAG
* *
77664728 TAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATCC
66 CAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACAATAAATCC
77664793 TATT
131 TATT
*
77664797 TCCTTGAAGTTGC-AGT-GGAGCAGATTGAAGTTACAAG-TCTTATCTCCCTGAAGTTGCAATGG
1 TCCTTGAAGTTGCGA-TAGGAGCAGATTGAAGTTA-AAGATCTTATCTCCCTGAAGTTGCAATGA
* * * *
77664859 AGCAGATTAAAGCGACAAGTTGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACA
64 AGCAGATCAAA--G---A-TAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACA
77664924 ATAAATC
123 ATAAATC
77664931 TTATACCTTT
Statistics
Matches: 117, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
133 50 0.43
134 16 0.14
135 1 0.01
138 1 0.01
139 49 0.42
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (134 bp):
TCCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGAAG
CAGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACAATAAATCC
TATT
Found at i:77664943 original size:139 final size:134
Alignment explanation
Indices: 77664664--77664946 Score: 358
Period size: 139 Copynumber: 2.1 Consensus size: 134
77664654 AACCTTATCT
* * *
77664664 CCTTGAAGTTGCGATAGGAGCAGGTTGAAGTTATAGATCTTATCTCCCTGAAGTTGCAATGAAGT
1 CCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGAAGC
*
77664729 AGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATCCT
66 AGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACAATAAATCCT
*
77664794 ATTT
131 ATTA
*
77664798 CCTTGAAGTTGC-AGT-GGAGCAGATTGAAGTTACAAG-TCTTATCTCCCTGAAGTTGCAATGGA
1 CCTTGAAGTTGCGA-TAGGAGCAGATTGAAGTTA-AAGATCTTATCTCCCTGAAGTTGCAATGAA
* * * *
77664860 GCAGATTAAAGCGACAAGTTGCAAATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACAA
64 GCAGATCAAA--G---A-TAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACAA
*
77664925 TAAATCTTA-TA
123 TAAATCCTATTA
77664936 CCTTTGAAGTT
1 CC-TTGAAGTT
77664947 ACAAGTAGGT
Statistics
Matches: 129, Mismatches: 11, Indels: 13
0.84 0.07 0.08
Matches are distributed among these distances:
133 50 0.39
134 15 0.12
135 1 0.01
138 4 0.03
139 59 0.46
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (134 bp):
CCTTGAAGTTGCGATAGGAGCAGATTGAAGTTAAAGATCTTATCTCCCTGAAGTTGCAATGAAGC
AGATCAAAGATAGCAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAACAATAAATCCT
ATTA
Found at i:77672910 original size:65 final size:65
Alignment explanation
Indices: 77672831--77672961 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
77672821 TCTTTTCGCA
77672831 TGCTTCTTCCTCTTCCAAATTATAAAAGCTATAATTTTCCCAGCTATCAGAACACCCACAGGAAC
1 TGCTTCTTCCTCTTCCAAATTATAAAAGCTATAATTTTCCCAGCTATCAGAACACCCACAGGAAC
77672896 TGCTTCTTCCTCTTCCAAATTATAAAAGCTATAATTTTCCCAGCTATCAGAACACCCACAGGAAC
1 TGCTTCTTCCTCTTCCAAATTATAAAAGCTATAATTTTCCCAGCTATCAGAACACCCACAGGAAC
77672961 T
1 T
77672962 ACAATACCCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.30
Consensus pattern (65 bp):
TGCTTCTTCCTCTTCCAAATTATAAAAGCTATAATTTTCCCAGCTATCAGAACACCCACAGGAAC
Found at i:77676051 original size:28 final size:28
Alignment explanation
Indices: 77676007--77676101 Score: 93
Period size: 29 Copynumber: 3.3 Consensus size: 28
77675997 ACATACATGC
* *
77676007 ATATGGCCCA-CTTGGCCCAATCTCATTT
1 ATATGGCCCATC-AGGCCCAATCACATTT
* *
77676035 ATATGGCCCATCAGGCCGAATTCACATTC
1 ATATGGCCCATCAGGCCCAA-TCACATTT
* * *
77676064 ATATGGCCTATCAAGCCCAAATCACCTTT
1 ATATGGCCCATCAGGCCC-AATCACATTT
77676093 ATATGGCCC
1 ATATGGCCC
77676102 GTTAGGCCTA
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
28 16 0.30
29 36 0.67
30 2 0.04
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAATCACATTT
Found at i:77676114 original size:29 final size:29
Alignment explanation
Indices: 77676064--77676124 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
77676054 ATTCACATTC
* *
77676064 ATATGGCCTATCAAGCCCAAATCACCTTT
1 ATATGGCCCATCAGGCCCAAATCACCTTT
* * *
77676093 ATATGGCCCGTTAGGCCTAAATCACC-TT
1 ATATGGCCCATCAGGCCCAAATCACCTTT
77676121 ATAT
1 ATAT
77676125 TCATGCTCAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAAATCACCTTT
Found at i:77678363 original size:37 final size:37
Alignment explanation
Indices: 77678317--77678391 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
77678307 CAATAATAAA
77678317 AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
1 AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
77678354 AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
1 AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
77678391 A
1 A
77678392 CATGATGATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (37 bp):
AAAGAAAACTTAAATAAATGAAATAAATAAGACATTG
Found at i:77678401 original size:3 final size:3
Alignment explanation
Indices: 77678393--77678448 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
77678383 AGACATTGAC
77678393 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
77678441 ATG ATG AT
1 ATG ATG AT
77678449 AACAATAATA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:77679174 original size:21 final size:20
Alignment explanation
Indices: 77679125--77679185 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
77679115 TCGAATTTTT
*
77679125 TTTTTTTTACAAAATCAAAA
1 TTTTTTTTAAAAAATCAAAA
* *
77679145 TTTTCTTTTAAAAAATCACTAC
1 TTTT-TTTTAAAAAATCA-AAA
*
77679167 TTTTTTTT-ATAAATCAAAA
1 TTTTTTTTAAAAAATCAAAA
77679186 CTTTATATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
19 1 0.03
20 11 0.33
21 16 0.48
22 5 0.15
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTTTTTTAAAAAATCAAAA
Found at i:77679188 original size:20 final size:20
Alignment explanation
Indices: 77679125--77679189 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 20
77679115 TCGAATTTTT
77679125 TTTTTTTTACAAAATCAAAA-
1 TTTTTTTTA-AAAATCAAAAC
**
77679145 TTTTCTTTTAAAAAATCACTAC
1 TTTT-TTTT-AAAAATCAAAAC
*
77679167 TTTTTTTTATAAATCAAAAC
1 TTTTTTTTAAAAATCAAAAC
77679187 TTT
1 TTT
77679190 ATATCAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
20 16 0.43
21 16 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTTTTTAAAAATCAAAAC
Found at i:77679429 original size:21 final size:22
Alignment explanation
Indices: 77679397--77679447 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
77679387 TTTAATATGA
77679397 TTAAAAAATAAA-TTT-T-TATT
1 TTAAAAAATAAACTTTCTCT-TT
*
77679417 TTAAAAATCTAAACTTTCTCTTT
1 TTAAAAA-ATAAACTTTCTCTTT
77679440 TTAAAAAA
1 TTAAAAAA
77679448 AATCAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 7 0.28
21 4 0.16
22 3 0.12
23 10 0.40
24 1 0.04
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (22 bp):
TTAAAAAATAAACTTTCTCTTT
Found at i:77679621 original size:6 final size:6
Alignment explanation
Indices: 77679612--77679648 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
77679602 TATATGGCAA
*
77679612 AAAAAG AAAAAG AAAAAA AAAAAG -AAAA- AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
77679649 TTAGAATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 8 0.30
6 19 0.70
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:77679633 original size:12 final size:12
Alignment explanation
Indices: 77679611--77679644 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
77679601 GTATATGGCA
77679611 AAAAAAGAAAAAG
1 AAAAAA-AAAAAG
77679624 AAAAAAAAAAAG
1 AAAAAAAAAAAG
77679636 AAAAAAAAA
1 AAAAAAAAA
77679645 GAAATTAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:77679633 original size:18 final size:17
Alignment explanation
Indices: 77679610--77679644 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
77679600 TGTATATGGC
77679610 AAAAAAAGAAAAAGAAAA
1 AAAAAAAGAAAAA-AAAA
77679628 AAAAAAAGAAAAAAAAA
1 AAAAAAAGAAAAAAAAA
77679645 GAAATTAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAAAAAAAAA
Found at i:77679639 original size:10 final size:10
Alignment explanation
Indices: 77679610--77679648 Score: 55
Period size: 9 Copynumber: 4.1 Consensus size: 10
77679600 TGTATATGGC
77679610 AAAAAAAG-A
1 AAAAAAAGAA
*
77679619 AAAAGAA-AA
1 AAAAAAAGAA
77679628 AAAAAAAGAA
1 AAAAAAAGAA
77679638 AAAAAAAGAA
1 AAAAAAAGAA
77679648 A
1 A
77679649 TTAGAATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 13 0.50
10 13 0.50
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:77679812 original size:25 final size:25
Alignment explanation
Indices: 77679763--77679812 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
77679753 TAATCTTATT
*
77679763 TATTTATAAAAAAAGATAATAATAA
1 TATTTATAAAAAAAAATAATAATAA
77679788 TATTT-TAAAAAAATAATAATAATAA
1 TATTTATAAAAAAA-AATAATAATAA
77679813 AATAATTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (25 bp):
TATTTATAAAAAAAAATAATAATAA
Found at i:77683266 original size:196 final size:196
Alignment explanation
Indices: 77682932--77683518 Score: 1138
Period size: 196 Copynumber: 3.0 Consensus size: 196
77682922 AGCAATGAGT
77682932 AGCCTATCCGCAGTTGTTCAAATAAATCCGAGGTAAGTCTTTGAGTAATGGAACTTAGCTTATGA
1 AGCCTATCCGCAGTTGTTCAAATAAATCCGAGGTAAGTCTTTGAGTAATGGAACTTAGCTTATGA
*
77682997 TTTGATTAAACAATGTTATATATTTATATATATAGCACAATAAATAAATTGTGACCTAATGGTTT
66 TTTGATTAAACAATGTTATATATTTATATATATAGCACAATAAATAAATTGTGACCTGATGGTTT
77683062 CTCTTGATTTACATATTGAAATAAATGGGTAGTGCATCGGCTTGTAGTCGAATGGTTATAGAAAA
131 CTCTTGATTTACATATTGAAATAAATGGGTAGTGCATCGGCTTGTAGTCGAATGGTTATAGAAAA
77683127 G
196 G
77683128 AGCCTATCCGCAGTTGTTCAAATAAATCCGAGGTAAGTCTTTGAGTAATGGAACTTAGCTTATGA
1 AGCCTATCCGCAGTTGTTCAAATAAATCCGAGGTAAGTCTTTGAGTAATGGAACTTAGCTTATGA
77683193 TTTGATTAAACAATGTTATATATTTATATATATAGCACAATAAATAAATTGTGACCTGATGGTTT
66 TTTGATTAAACAATGTTATATATTTATATATATAGCACAATAAATAAATTGTGACCTGATGGTTT
77683258 CTCTTGATTTACATATTGAAATAAATGGGTAGTGCATCGGCTTGTAGTCGAATGGTTATAGAAAA
131 CTCTTGATTTACATATTGAAATAAATGGGTAGTGCATCGGCTTGTAGTCGAATGGTTATAGAAAA
77683323 G
196 G
* *
77683324 AGCCTATCCGCAGTTGTTCAAATAAATCCAAGGTAAGTCTTTGAGTAATGGAACGTAGCTTATGA
1 AGCCTATCCGCAGTTGTTCAAATAAATCCGAGGTAAGTCTTTGAGTAATGGAACTTAGCTTATGA
77683389 TTTGATTAAACAATGTTATATATTTATATATATAGCACAATAAATAAATTGTGACCTGATGGTTT
66 TTTGATTAAACAATGTTATATATTTATATATATAGCACAATAAATAAATTGTGACCTGATGGTTT
*
77683454 CTCTTGATTTACATATTGAAATAAATGGGTAGTGCATCGGCTTGTAGTCGAATGGTTATAAAAAA
131 CTCTTGATTTACATATTGAAATAAATGGGTAGTGCATCGGCTTGTAGTCGAATGGTTATAGAAAA
77683519 TCATGTAGAG
Statistics
Matches: 387, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
196 387 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (196 bp):
AGCCTATCCGCAGTTGTTCAAATAAATCCGAGGTAAGTCTTTGAGTAATGGAACTTAGCTTATGA
TTTGATTAAACAATGTTATATATTTATATATATAGCACAATAAATAAATTGTGACCTGATGGTTT
CTCTTGATTTACATATTGAAATAAATGGGTAGTGCATCGGCTTGTAGTCGAATGGTTATAGAAAA
G
Found at i:77683737 original size:40 final size:40
Alignment explanation
Indices: 77683682--77683898 Score: 335
Period size: 40 Copynumber: 5.4 Consensus size: 40
77683672 GATTATATCT
*
77683682 GGGTTAAGTCCCGAAGGCATTCATGCTGGTTGTTATTTCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
*
77683722 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTCCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
77683762 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
* * *
77683802 GGGTTAAGTCCCGAAGGCATTCATGATGGTTGCTATTTCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
* * **
77683842 GAGTTAAGTCCCGAAGGCATTTGTGCTGGTTGTTACATCC
1 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
* *
77683882 GGGCTAAATCCCGAAGG
1 GGGTTAAGTCCCGAAGG
77683899 TAATTGGGTT
Statistics
Matches: 161, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 161 1.00
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATTTCC
Found at i:77685536 original size:14 final size:15
Alignment explanation
Indices: 77685517--77685549 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
77685507 ATACAAGAAA
77685517 AAAAATCAAATA-AT
1 AAAAATCAAATATAT
77685531 AAAAATCAAATATAT
1 AAAAATCAAATATAT
77685546 AAAA
1 AAAA
77685550 TAATAATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAATCAAATATAT
Found at i:77686762 original size:15 final size:15
Alignment explanation
Indices: 77686742--77686773 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
77686732 TTTGAAAAGG
77686742 TACCGATATTATTTT
1 TACCGATATTATTTT
77686757 TACCGATATTATTTT
1 TACCGATATTATTTT
77686772 TA
1 TA
77686774 ACTTTGATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.06, T:0.53
Consensus pattern (15 bp):
TACCGATATTATTTT
Found at i:77688578 original size:29 final size:29
Alignment explanation
Indices: 77688503--77688581 Score: 113
Period size: 29 Copynumber: 2.7 Consensus size: 29
77688493 GTATCAACGC
*
77688503 CCATCGAATATGAAAAGAGATGGTGAAGA
1 CCATCGAATATGAAAAGGGATGGTGAAGA
* *
77688532 CCATGGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGAAGA
* *
77688561 CCATTGAATTTGAAAAGGGAT
1 CCATCGAATATGAAAAGGGAT
77688582 AGTTTCGACC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.41, C:0.10, G:0.29, T:0.20
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGAAGA
Found at i:77688590 original size:29 final size:29
Alignment explanation
Indices: 77688503--77688593 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
77688493 GTATCAACGC
* * * *
77688503 CCATCGAATATGAAAAGAGATGGTGAAGA
1 CCATGGAATATGAAAAGGGATAGTGACGA
*
77688532 CCATGGAATATGAAAAGGGATGGTGACGA
1 CCATGGAATATGAAAAGGGATAGTGACGA
* * **
77688561 CCATTGAATTTGAAAAGGGATAGTTTCGA
1 CCATGGAATATGAAAAGGGATAGTGACGA
77688590 CCAT
1 CCAT
77688594 CGTTTAGTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.22
Consensus pattern (29 bp):
CCATGGAATATGAAAAGGGATAGTGACGA
Found at i:77692897 original size:2 final size:2
Alignment explanation
Indices: 77692892--77692924 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
77692882 TATACACCAT
*
77692892 TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77692925 TTGATAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:77693019 original size:2 final size:2
Alignment explanation
Indices: 77693007--77693050 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
77692997 AATTATTCAC
*
77693007 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77693049 AT
1 AT
77693051 TTGTTGTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:77693658 original size:2 final size:2
Alignment explanation
Indices: 77693651--77693699 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
77693641 TAAATTTTTC
77693651 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77693693 TA TA TA T
1 TA TA TA T
77693700 TACGTACATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77694436 original size:131 final size:130
Alignment explanation
Indices: 77694213--77694456 Score: 391
Period size: 131 Copynumber: 1.9 Consensus size: 130
77694203 AAAATTCTCT
*
77694213 AAAACGAAGGCAATACTCAATGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGCGAT
1 AAAACGAAGGCAATACTAAATGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGCGAT
* *
77694278 TTCCCGTTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCGCTCATATCTTTAAAAACCCTTC
66 TTCCCGTTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCATATCTTTAAAAACCCTTC
* *
77694343 AAAACGAAGGTAATAC-AAGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCG
1 AAAACGAAGGCAATACTAA-ATGTTTGGCAATTC-GAGAATCGTGCCCTATCGTGCTGGGTTGCG
* * *
77694407 ATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
64 ATTTCCCGTTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCAT
77694457 GATTCTCTAA
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
129 1 0.01
130 29 0.28
131 74 0.71
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (130 bp):
AAAACGAAGGCAATACTAAATGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGCGAT
TTCCCGTTTGTTCAAAACAATCAAATATTCCTTTAGAATTTCACTCATATCTTTAAAAACCCTTC
Found at i:77702085 original size:20 final size:23
Alignment explanation
Indices: 77702037--77702091 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
77702027 ATGATGTTAG
* *
77702037 ATGTTAGAATTGGCTTAGTTATA
1 ATGTTTGAATTGGCTTAGGTATA
77702060 ATGTTTGAATTGGC-T-GGTAT-
1 ATGTTTGAATTGGCTTAGGTATA
77702080 ATGTTTGCAATT
1 ATGTTTG-AATT
77702092 ATTGGTATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 7 0.24
21 8 0.28
22 1 0.03
23 13 0.45
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.45
Consensus pattern (23 bp):
ATGTTTGAATTGGCTTAGGTATA
Found at i:77704982 original size:206 final size:206
Alignment explanation
Indices: 77704624--77706052 Score: 1754
Period size: 206 Copynumber: 7.0 Consensus size: 206
77704614 ATCTTGCATA
* * *
77704624 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGTCGGTTGTTTGTGAACTTCCTG
1 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
* * *
77704689 ATGTATTTCCGGAAGAATTACCTGGTTTACCACCAGCTAGAAAAGTGGAGTTCTCTATAGACCTT
66 ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
* * ** *
77704754 GTTCCGAGGACAACACTGATATCCATAGCACCCTACAAAATGAATCCTTTCGAATTGAAAGAATT
131 GTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCTTCCGAATTGAAAGAATT
*
77704819 GAAAACATAGT
196 GAAAGCATAGT
* * * * *
77704830 TGTTTTGGATACTAAAGTATCTAAGTCTAAGATTCAGTCAGTGCCGATTATTTGTGAATTTCTTA
1 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
*
77704895 ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAAACCTT
66 ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
** * * * * * *
77704960 GTTCCGAGGACAACATTGATATCCATAACACCTTATAGACTGGCTTCTACCGAATTGAAAGAATT
131 GTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCTTCCGAATTGAAAGAATT
**
77705025 GAAAGCACGGT
196 GAAAGCATAGT
* *
77705036 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTTAGTCAGTGCTGGTTGTTTGTGAATTTCCTA
1 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
* * * * * *
77705101 ATGTATTT-CTGAAAAAATTATCTAGTTTACCACCAGTTAGAGAAGTGAAGTTTTCTATAGACCT
66 ATGTATTTCCAG-AAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCT
* * * * * * *
77705165 TGTTCCGGGGACAACACTGATGTCTATAGCAACCTACAGAATGGCTCCTCCCGAATTGAAATAAT
130 TGTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCTTCCGAATTGAAAGAAT
*
77705230 TGAAAGCACAGT
195 TGAAAGCATAGT
* * * *
77705242 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCACTGCCGGTTGTTTGTAAATTTCCTG
1 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
** * * * *
77705307 ATGTATTTCTGGAAGAATTACTTGATTTGCCACTAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
66 ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
** * * *
77705372 GTTTTGAGGACAACATCGATA-CCTATAGCACCCTACAGAATGGAC-CCTACAGAATTGAAAGAA
131 GTTCCGAGGACAACACCGATATCC-ATAGCACCCTACAGAATGG-CTCCTTCCGAATTGAAAGAA
*
77705435 TTGGAAGCATAGT
194 TTGAAAGCATAGT
* * * * *
77705448 TGTTTTGGATACTAAAGTATCTGAGTCAAAAATTCAGTCAGTGCCAGTTGTTTGTGAATTTCTTG
1 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
* * * *
77705513 ATGTATTTCCGGAAGAATTACCTGGTTTGCCACCAGTTAGAGAAGTAGAGTTCTCTACAGACCTT
66 ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
* * * * *
77705578 ATTCCGGGGACAACACCGATATCCATAGCACCGTACAAAATGGCT-CTT----A-T--CAG-ATT
131 GTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCTTCCGAATTGAAAGAATT
* *
77705634 GAAAGAACAGT
196 GAAAGCATAGT
* * ** * *
77705645 TGTTTTGGATACTAAAGTATCTGAGTTGAAGTTTCAGTCAGCACAGATTGTTTGTGAATTTCCTA
1 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
* * * *
77705710 ATGTACTTCCAGAAGAATTAGCTAGTTTACCCCCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
66 ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
* * * * *
77705775 GTTCC-AGGGACAACATCGATATCCATAGCACCCTATAGAATGGTTCCTACTGAATTGAAAGAAT
131 GTTCCGA-GGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCTTCCGAATTGAAAGAAT
77705839 TGAAAGCATAGT
195 TGAAAGCATAGT
* * *
77705851 TGTTTTGGATACTAAAGTATCTAAGTCGAAGATTCAGTCAGTACTGGTTGTTTGTGAATTTCCTA
1 TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
* * ** ** * *
77705916 ATGTATTTTCAGAAAAATTTTCTGGCCTACTACCAGTTAGAGAAGTAGAGTTCTCTATAGACCTT
66 ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
* *
77705981 GTTCC-AGGGACAACACCGATATCTATAGCTA-CCTACAGAATGGCTCCTACCGAATTGAAAGAA
131 GTTCCGA-GGACAACACCGATATCCATAGC-ACCCTACAGAATGGCTCCTTCCGAATTGAAAGAA
*
77706044 CTGAAAGCA
194 TTGAAAGCA
77706053 CAATTGCAAG
Statistics
Matches: 1045, Mismatches: 161, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
197 159 0.15
198 4 0.00
200 1 0.00
201 1 0.00
202 1 0.00
203 1 0.00
205 8 0.01
206 865 0.83
207 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (206 bp):
TGTTTTGGATACTAAAGTATCTGAGTCGAAGATTCAGTCAGTGCCGGTTGTTTGTGAATTTCCTA
ATGTATTTCCAGAAGAATTACCTGGTTTACCACCAGTTAGAGAAGTGGAGTTCTCTATAGACCTT
GTTCCGAGGACAACACCGATATCCATAGCACCCTACAGAATGGCTCCTTCCGAATTGAAAGAATT
GAAAGCATAGT
Found at i:77712097 original size:26 final size:26
Alignment explanation
Indices: 77712061--77712170 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
77712051 TGATACAAAT
77712061 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
77712087 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
77712113 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
77712139 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
77712165 TGATAA
1 TGATAA
77712171 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:77713640 original size:28 final size:26
Alignment explanation
Indices: 77713598--77713672 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
77713588 AAAAGTAGCT
* *
77713598 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTCTTATACCCCTA-G-ATGGA
* *
77713626 AAATTACTCTTATACCCCTAGGTGTA
1 AAATTACTCTTATACCCCTAGATGGA
77713652 AAATTAC-CGTTATACCCCTAG
1 AAATTACTC-TTATACCCCTAG
77713673 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.02
26 22 0.52
27 1 0.02
28 18 0.43
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTCTTATACCCCTAGATGGA
Found at i:77713817 original size:27 final size:27
Alignment explanation
Indices: 77713776--77713902 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
77713766 GAGGAAGTGT
*
77713776 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
77713803 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
77713830 TCTGGTGGCTCTGCTACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
77713857 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* *
77713885 TCTGGTGACTCTGTCACA
1 TCTGGTGGCTCTGCCACA
77713903 TTATTTGTTC
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
27 72 0.83
28 15 0.17
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:77717686 original size:46 final size:48
Alignment explanation
Indices: 77717619--77717739 Score: 156
Period size: 48 Copynumber: 2.6 Consensus size: 48
77717609 GGACAGGACA
* * *
77717619 AGACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATCATATATATATGGCATTGG
* *
77717665 AGACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATCATATATATATGGCATTGG
* **
77717713 AGACAGGAATAATTCATGTAAGTCCAT
1 AGACAGGAATGAGCCATGTAAGTCCAT
77717740 GTCGAAGACA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 28 0.44
47 1 0.02
48 35 0.55
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (48 bp):
AGACAGGAATGAGCCATGTAAGTCCATATCATATATATATGGCATTGG
Found at i:77722659 original size:13 final size:13
Alignment explanation
Indices: 77722641--77722695 Score: 85
Period size: 13 Copynumber: 4.2 Consensus size: 13
77722631 TTTAATAATA
77722641 AAATAAAGAAATG
1 AAATAAAGAAATG
77722654 AAATAAAGAAAT-
1 AAATAAAGAAATG
*
77722666 AAATAAATAAATG
1 AAATAAAGAAATG
77722679 AAATAAAAGAAATG
1 AAAT-AAAGAAATG
77722693 AAA
1 AAA
77722696 AAGAAAAACA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
12 11 0.29
13 16 0.42
14 11 0.29
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:77722671 original size:4 final size:4
Alignment explanation
Indices: 77722641--77722685 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
77722631 TTTAATAATA
* *
77722641 AAAT AAAG AAAT GAAAT AAAG AAAT AAAT AAAT AAAT GAAAT AAA
1 AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA
77722686 AGAAATGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
4 27 0.77
5 8 0.23
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (4 bp):
AAAT
Found at i:77722671 original size:25 final size:26
Alignment explanation
Indices: 77722641--77722701 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
77722631 TTTAATAATA
77722641 AAATAAAGAAATGAAAT-AAAGAAAT
1 AAATAAAGAAATGAAATAAAAGAAAT
*
77722666 AAATAAATAAATGAAATAAAAGAAAT
1 AAATAAAGAAATGAAATAAAAGAAAT
*
77722692 GAA-AAAGAAA
1 AAATAAAGAAA
77722702 AACAAAGCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 22 0.69
26 10 0.31
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (26 bp):
AAATAAAGAAATGAAATAAAAGAAAT
Found at i:77726746 original size:13 final size:13
Alignment explanation
Indices: 77726728--77726752 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77726718 TTTAATAATA
77726728 AAATAAAGAAATG
1 AAATAAAGAAATG
77726741 AAATAAAGAAAT
1 AAATAAAGAAAT
77726753 AAAAGAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:77743922 original size:19 final size:19
Alignment explanation
Indices: 77743898--77743937 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
77743888 GCACTACTCG
77743898 AAATTGCCTCAACAATTCT
1 AAATTGCCTCAACAATTCT
77743917 AAATTGCCTCAACAATTCT
1 AAATTGCCTCAACAATTCT
77743936 AA
1 AA
77743938 TATTATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (19 bp):
AAATTGCCTCAACAATTCT
Found at i:77746773 original size:26 final size:25
Alignment explanation
Indices: 77746729--77746789 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
77746719 TTATTTCATT
* * *
77746729 AAATAAAAAAATTTAAAAAATATAA
1 AAATAAATATATTTAAAAAACATAA
77746754 TAAATCAAATATATTT-AAAAACATAA
1 -AAAT-AAATATATTTAAAAAACATAA
77746780 AAATAAATAT
1 AAATAAATAT
77746790 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 6 0.19
25 4 0.13
26 13 0.42
27 8 0.26
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (25 bp):
AAATAAATATATTTAAAAAACATAA
Found at i:77746801 original size:22 final size:22
Alignment explanation
Indices: 77746760--77746818 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
77746750 ATAATAAATC
* *
77746760 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
77746780 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
77746802 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
77746819 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:77752509 original size:21 final size:19
Alignment explanation
Indices: 77752469--77752514 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 19
77752459 ATCTATAAAC
77752469 TTTAGATTTAATTTTTATAT
1 TTTA-ATTTAATTTTTATAT
77752489 TTTAATTTAATATTTTAATAT
1 TTTAATTTAAT-TTTT-ATAT
77752510 TTTAA
1 TTTAA
77752515 GAGTAATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTAATTTAATTTTTATAT
Found at i:77753855 original size:17 final size:18
Alignment explanation
Indices: 77753822--77753855 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77753812 TATACAGTGT
77753822 TTTATTATAATAATTAAA
1 TTTATTATAATAATTAAA
*
77753840 TTTATTGTAA-AATTAA
1 TTTATTATAATAATTAA
77753856 TTTTTTATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTATTATAATAATTAAA
Found at i:77767632 original size:27 final size:27
Alignment explanation
Indices: 77767592--77767646 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
77767582 TGTCATGTGA
* *
77767592 AATTGAATGGTAAATTATTGTTACATG
1 AATTGAATGGTAAATTACTATTACATG
*
77767619 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGTAAATTACTATTACATG
77767646 A
1 A
77767647 GTTGTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (27 bp):
AATTGAATGGTAAATTACTATTACATG
Found at i:77767942 original size:12 final size:12
Alignment explanation
Indices: 77767925--77767949 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
77767915 GGCTACTACG
77767925 TGTACCGAATAA
1 TGTACCGAATAA
77767937 TGTACCGAATAA
1 TGTACCGAATAA
77767949 T
1 T
77767950 TGGTCGCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TGTACCGAATAA
Found at i:77772486 original size:47 final size:44
Alignment explanation
Indices: 77772382--77772547 Score: 192
Period size: 47 Copynumber: 3.6 Consensus size: 44
77772372 TACACGTGCT
* * *
77772382 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAGCC
** *
77772426 GATGTGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT--A-GCC
77772473 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTAGCC
77772519 GATGCCATGTCCCAGACATGTCTTACACT
1 GATG-CATGTCCCAGACATGTCTTACACT
77772548 AGCGCACAAA
Statistics
Matches: 105, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
43 5 0.05
44 28 0.27
46 8 0.08
47 54 0.51
49 2 0.02
50 8 0.08
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAGCC
Found at i:77777940 original size:18 final size:18
Alignment explanation
Indices: 77777888--77777941 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
77777878 AGATTAAGAG
*
77777888 AGAAAAATAAATAAATAG
1 AGAAAAATAAATAAATAA
* **
77777906 CG-AAAGGAAATAAATAA
1 AGAAAAATAAATAAATAA
*
77777923 AGAAAAATAAATTAATAA
1 AGAAAAATAAATAAATAA
77777941 A
1 A
77777942 TCAATCAAGA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.17
Consensus pattern (18 bp):
AGAAAAATAAATAAATAA
Found at i:77784860 original size:46 final size:46
Alignment explanation
Indices: 77784790--77785104 Score: 196
Period size: 46 Copynumber: 6.7 Consensus size: 46
77784780 TGATATGTGT
* *
77784790 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATCATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATAAGA
* *
77784836 GCCAGTGTAAGACATGTCTAGGACATGCATCGG-CA-TTGAGATAAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACAT--GATAAGA
* * * * *
77784882 GATAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATA-A-GA
* * * * * *
77784930 GCTAGTGTAAGACTTGTCTAGGACATGGCATCAG---CTTGTTATGT
1 GCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCACATGATAAGA
* * * *
77784974 G-TCAGTGTAAGACCTGTCTCGGACATGGCATC-GACACCGATAGATGAGA
1 GCT-AGTGTAAGACATGTCTAGGACAT-GCATCGGCCA-C-AT-GATAAGA
* * * * * * *
77785023 GCTAGTGTAAGACCTATCTGGGACATGGCATCAGCCTCATTATATAAAA
1 GCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCACA-T-GATAAGA
*
77785072 G-TCAGTGTAAGACCTGTCTAGGACATGGCATCG
1 GCT-AGTGTAAGACATGTCTAGGACAT-GCATCG
77785105 ACTTGATGTG
Statistics
Matches: 213, Mismatches: 38, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 29 0.14
45 2 0.01
46 75 0.35
47 3 0.01
48 27 0.13
49 72 0.34
50 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATAAGA
Found at i:77784981 original size:92 final size:91
Alignment explanation
Indices: 77784781--77785153 Score: 281
Period size: 92 Copynumber: 4.0 Consensus size: 91
77784771 GACATTGGGT
** *
77784781 GATATGTGTGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATCATGAGAGCCAGTGTAA
1 GATATGTGT-C-AGTGTAAGACATGTCTAGGACATGCATCGGCC-CAAGATGAGAGCTAGTGTAA
*
77784846 GACATGTCTAGGACAT-GCATCGGCATTGA
63 GACATGTCTAGGACATGGCATCAGCATT-A
* * * * *
77784875 GATAAGAGAT-AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATATACAAGCTAGTGTA
1 GATATGTG-TCAGTGTAAGACATGTCTAGGACATGCATCGGCC-CAAGAT-GA-GAGCTAGTGTA
*
77784939 AGACTTGTCTAGGACATGGCATCAGC-TT-
62 AGACATGTCTAGGACATGGCATCAGCATTA
* * * *
77784967 GTTATGTGTCAGTGTAAGACCTGTCTCGGACATGGCATCGACACCGATAGATGAGAGCTAGTGTA
1 GATATGTGTCAGTGTAAGACATGTCTAGGACAT-GCATCGGC-CC-A-AGATGAGAGCTAGTGTA
* * *
77785032 AGACCTATCTGGGACATGGCATCAGCCTCATTA
62 AGACATGTCTAGGACATGGCATCAG---CATTA
* *** * * ** *
77785065 TATAAAAGTCAGTGTAAGACCTGTCTAGGACATGGCATC-G-ACTTGATGTGCTAGCTAGTGTAA
1 GATATGTGTCAGTGTAAGACATGTCTAGGACAT-GCATCGGCCCAAGATGAG--AGCTAGTGTAA
* *
77785128 GACCATGTCTGGGACATGGTATCAGC
63 GA-CATGTCTAGGACATGGCATCAGC
77785154 GTCTTATCCC
Statistics
Matches: 226, Mismatches: 36, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
91 1 0.00
92 61 0.27
93 47 0.21
94 36 0.16
95 26 0.12
96 20 0.09
97 2 0.01
98 33 0.15
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (91 bp):
GATATGTGTCAGTGTAAGACATGTCTAGGACATGCATCGGCCCAAGATGAGAGCTAGTGTAAGAC
ATGTCTAGGACATGGCATCAGCATTA
Found at i:77785037 original size:49 final size:48
Alignment explanation
Indices: 77784790--77785146 Score: 164
Period size: 46 Copynumber: 7.6 Consensus size: 48
77784780 TGATATGTGT
* * * * *
77784790 GCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCAC-AT-CATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAA
* * * *
77784836 GCCAGTGTAAGACATGTCTAGGACAT-GCATCG--GC-ATTGAGAT-AAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCCGA-T-AGATGAA-A
* * * *
77784882 GATAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTC-A-AGATATACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGAT-GA-AA
* * ** * *
77784930 GCTAGTGTAAGACTTGTCTAGGACATGGCATC-AGCTTG-T-TATG--T
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCCGATAGATGAAA
* *
77784974 G-TCAGTGTAAGACCTGTCTCGGACATGGCATCGACACCGATAGATGAGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAA
* * *
77785023 GCTAGTGTAAGACCTATCTGGGACATGGCATC-AGCCTC-ATTATATAAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-CC-CGA-TAGATGAAA
* ** **
77785072 G-TCAGTGTAAGACCTGTCTAGGACATGGCATCGACTTGAT-G-TGCTA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAA
77785118 GCTAGTGTAAGACCATGTCTGGGACATGG
1 GCTAGTGTAAGACC-TGTCTGGGACATGG
77785147 TATCAGCGTC
Statistics
Matches: 244, Mismatches: 37, Indels: 59
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.01
44 30 0.12
45 3 0.01
46 82 0.34
47 17 0.07
48 32 0.13
49 75 0.31
50 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAA
Found at i:77785090 original size:142 final size:139
Alignment explanation
Indices: 77784838--77785146 Score: 358
Period size: 142 Copynumber: 2.2 Consensus size: 139
77784828 TCATGAGAGC
* * ** *
77784838 CAGTGTAAGACATGTCTAGGACAT-GCATCGGCATTGAGATAAGAGATAGTGTAAGACATGTCTG
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACACCGAGATAAGAGATAGTGTAAGACATATCTG
* * *
77784902 GGACATGCATCGGCCTCAAGATATACAAGCTAGTGTAAGACTTGTCTAGGACATGGCATC-AGCT
66 GGACATGCATCAGCCTCAAGATATAAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGA-CT
77784966 TGTTATGTG-T-
130 TG--ATGTGCTA
* * * *
77784976 CAGTGTAAGACCTGTCTCGGACATGGCATCGACACCGATAGATGAGAGCTAGTGTAAGACCTATC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACACCG--AGATAAGAGATAGTGTAAGACATATC
**
77785041 TGGGACATGGCATCAGCCTCATTATATAAAAG-TCAGTGTAAGACCTGTCTAGGACATGGCATCG
64 TGGGACAT-GCATCAGCCTCAAGATATAAAAGCT-AGTGTAAGACCTGTCTAGGACATGGCATCG
77785105 ACTTGATGTGCTA
127 ACTTGATGTGCTA
*
77785118 GCTAGTGTAAGACCATGTCTGGGACATGG
1 -C-AGTGTAAGACC-TGTCTAGGACATGG
77785147 TATCAGCGTC
Statistics
Matches: 145, Mismatches: 15, Indels: 15
0.83 0.09 0.09
Matches are distributed among these distances:
138 22 0.15
139 9 0.06
140 5 0.03
141 32 0.22
142 51 0.35
143 2 0.01
144 11 0.08
145 13 0.09
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (139 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACACCGAGATAAGAGATAGTGTAAGACATATCTG
GGACATGCATCAGCCTCAAGATATAAAAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGACTT
GATGTGCTA
Found at i:77785101 original size:98 final size:91
Alignment explanation
Indices: 77784929--77785153 Score: 263
Period size: 98 Copynumber: 2.4 Consensus size: 91
77784919 AAGATATACA
* * ** *
77784929 AGCTAGTGTAAGACTTGTCTAGGACATGGCATCAG-CTTGTTATGTGTCAGTGTAAGACCTGTCT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCATTATATGTCAGTGTAAGACCTGTCT
*
77784993 CGGACATGGCATCGACACCGATAGATGAG
66 AGGACATGGCATCGAC-CCGAT-G-TGAG
*
77785022 AGCTAGTGTAAGACCTATCTGGGACATGGCATCAGCCTCATTATATAAAAGTCAGTGTAAGACCT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCATTATAT----GTCAGTGTAAGACCT
** **
77785087 GTCTAGGACATGGCATCGACTTGATGTGCT
62 GTCTAGGACATGGCATCGACCCGATGTGAG
*
77785117 AGCTAGTGTAAGACCATGTCTGGGACATGGTATCAGC
1 AGCTAGTGTAAGACC-TGTCTGGGACATGGCATCAGC
77785154 GTCTTATCCC
Statistics
Matches: 113, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
93 32 0.28
94 7 0.06
95 17 0.15
96 20 0.18
97 3 0.03
98 34 0.30
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (91 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCATTATATGTCAGTGTAAGACCTGTCT
AGGACATGGCATCGACCCGATGTGAG
Found at i:77789528 original size:50 final size:50
Alignment explanation
Indices: 77789453--77789695 Score: 346
Period size: 50 Copynumber: 4.9 Consensus size: 50
77789443 ACGGGTGGGA
* * * *
77789453 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATATCAG
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATATCGG
*
77789503 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATATTGG
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATATCGG
* * *
77789553 TGTCAATGCCATGTTCCAGACATGGTCTTACACCGGCTCTCATATATCGG
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATATCGG
* * *
77789603 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TA-CGA
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATATCGG
* * *
77789651 TGCCGATGCCATGTTCCAAACATGGTCTTGCACTGGCTCACATAT
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAT
77789696 TACCCTAGTA
Statistics
Matches: 172, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
48 40 0.23
49 3 0.02
50 129 0.75
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (50 bp):
TGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATATCGG
Found at i:77797283 original size:106 final size:106
Alignment explanation
Indices: 77797098--77797301 Score: 372
Period size: 106 Copynumber: 1.9 Consensus size: 106
77797088 GAATAAGTCG
* *
77797098 ATTACATATTCAGAATAATCTTCAGAAAAATTTGATATATCTTTTAATACTGTCTTTACTTACTA
1 ATTACATATTCAGAATAATCTTCAAAAAAATCTGATATATCTTTTAATACTGTCTTTACTTACTA
*
77797163 ACCCATTCTCAACTCTGACTGCATTCTTAATTAACGGTAAC
66 ACCCATCCTCAACTCTGACTGCATTCTTAATTAACGGTAAC
*
77797204 ATTACATATTCAGAATAATCTTCAAAAAAATCTGATATATCTTTTAATATTGTCTTTACTTACTA
1 ATTACATATTCAGAATAATCTTCAAAAAAATCTGATATATCTTTTAATACTGTCTTTACTTACTA
77797269 ACCCATCCTCAACTCTGACTGCATTCTTAATTA
66 ACCCATCCTCAACTCTGACTGCATTCTTAATTA
77797302 TTCAACCACT
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 94 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.39
Consensus pattern (106 bp):
ATTACATATTCAGAATAATCTTCAAAAAAATCTGATATATCTTTTAATACTGTCTTTACTTACTA
ACCCATCCTCAACTCTGACTGCATTCTTAATTAACGGTAAC
Found at i:77799600 original size:23 final size:24
Alignment explanation
Indices: 77799571--77799615 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
77799561 GGAGTCCAAG
*
77799571 AGAGCC-ATATTAGGAAGCTCATA
1 AGAGCCAATATCAGGAAGCTCATA
*
77799594 AGAGCCAATATCAGGATGCTCA
1 AGAGCCAATATCAGGAAGCTCA
77799616 CATAGAGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (24 bp):
AGAGCCAATATCAGGAAGCTCATA
Found at i:77802187 original size:46 final size:44
Alignment explanation
Indices: 77802093--77802258 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 44
77802083 ACATCGACAC
*
77802093 CATGTCCCAGACATGGTCTTACACT-GACACATCTCGTAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAG-CACGTCTCG-AGCCGATG
* *
77802138 CATGTCCCAGACGT-GTCTTACACTAGCTTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTAGC--ACGTCTCGA-GCCGATG
* *
77802184 CATGTCTCAGACAT-GTCTTACACTAGCACTTGTCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCAC--GTCTCGA-GCCGATG
77802230 CCATGTCCCAGACATGGTCTTACACTAGC
1 -CATGTCCCAGACATGGTCTTACACTAGC
77802259 TCTCATAATG
Statistics
Matches: 104, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
44 13 0.12
45 15 0.14
46 50 0.48
47 13 0.12
48 13 0.12
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGGTCTTACACTAGCACGTCTCGAGCCGATG
Found at i:77802282 original size:94 final size:92
Alignment explanation
Indices: 77802131--77802304 Score: 219
Period size: 94 Copynumber: 1.9 Consensus size: 92
77802121 ACATCTCGTA
* * * *
77802131 GCCGATGCATGTCCCAGACGTGTCTTACACTAGCTTACGTCTCGAGGCCAATGCATGTCTC-AGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCCAATACATGTC-CAAGA
77802195 CATGTCTTACACTAGCACTTGTCTCAAT
65 CATGTCTTACACTAGCACTTGTCTCAAT
* *
77802223 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCCGATACATGTCCA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-ATCGAGGCCAATACATGTCCA
*
77802286 ATACATGTCTTACACTAGC
62 AGACATGTCTTACACTAGC
77802305 TTACACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
92 7 0.10
93 14 0.20
94 47 0.67
95 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCCAATACATGTCCAAGAC
ATGTCTTACACTAGCACTTGTCTCAAT
Found at i:77804220 original size:89 final size:88
Alignment explanation
Indices: 77804073--77804248 Score: 291
Period size: 89 Copynumber: 2.0 Consensus size: 88
77804063 AAATTGAATA
* *
77804073 AGAAAGCTTTTTGGATTTTGATTGGAGTATCGTGACATTTAAAATTATTTTATAAAAAAAAACTA
1 AGAAAGCTTTTTGGATTTTGATTGGAGTACCATGACATTTAAAATTATTTTATAAAAAAAAACTA
77804138 AATGTAAAAGAA-AAGAGGAAAGG
66 AATGTAAAA-AAGAAGAGGAAAGG
*
77804161 AGAAAGCTTTTTGGATTTTGATTTGGAGTACCATGACATTTAAAATTATTTTATAAAAAAATACT
1 AGAAAGCTTTTTGGATTTTGA-TTGGAGTACCATGACATTTAAAATTATTTTATAAAAAAAAACT
*
77804226 AAATGTAAAAAAGAAGGGGAAAG
65 AAATGTAAAAAAGAAGAGGAAAG
77804249 AGAGCTTTTG
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
88 23 0.28
89 59 0.72
ACGTcount: A:0.45, C:0.05, G:0.19, T:0.31
Consensus pattern (88 bp):
AGAAAGCTTTTTGGATTTTGATTGGAGTACCATGACATTTAAAATTATTTTATAAAAAAAAACTA
AATGTAAAAAAGAAGAGGAAAGG
Found at i:77811121 original size:29 final size:28
Alignment explanation
Indices: 77811080--77811135 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
77811070 TTTAAATTTA
77811080 AAAAATAAAAAGACTAAATTCTTAAAAAT
1 AAAAATAAAAAGACTAAATTC-TAAAAAT
** *
77811109 AAAAATATGAAGATTAAATTCTAAAAA
1 AAAAATAAAAAGACTAAATTCTAAAAA
77811136 GGCAAAGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (28 bp):
AAAAATAAAAAGACTAAATTCTAAAAAT
Found at i:77819403 original size:47 final size:47
Alignment explanation
Indices: 77819334--77819428 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
77819324 TGTGAGTTAT
*
77819334 GTGCAGATGATCACTTTGATGCCTCGATAGATCGCATGGATTATAAC
1 GTGCAGATGATCACTTTGATGCCTCGATAGATAGCATGGATTATAAC
*
77819381 GTGCAGATGATCACTTTGATGCCTGGATAGATAGCATGGATTATAAC
1 GTGCAGATGATCACTTTGATGCCTCGATAGATAGCATGGATTATAAC
77819428 G
1 G
77819429 GATCTAAATC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (47 bp):
GTGCAGATGATCACTTTGATGCCTCGATAGATAGCATGGATTATAAC
Found at i:77824849 original size:36 final size:36
Alignment explanation
Indices: 77824795--77824871 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 36
77824785 TATTAATGCA
* *
77824795 TTAT-TAGTTTGTATTGTAACTGTGTTTGTCTGTTC
1 TTATCTAGTTTGTACTGTAACTATGTTTGTCTGTTC
*
77824830 TTATCTAGTTTGTACTGTAACTATGTTTGTCTTTTC
1 TTATCTAGTTTGTACTGTAACTATGTTTGTCTGTTC
77824866 TTATCT
1 TTATCT
77824872 TCTTTGCCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 4 0.11
36 34 0.89
ACGTcount: A:0.16, C:0.12, G:0.16, T:0.57
Consensus pattern (36 bp):
TTATCTAGTTTGTACTGTAACTATGTTTGTCTGTTC
Found at i:77831448 original size:19 final size:19
Alignment explanation
Indices: 77831412--77831450 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
77831402 CCAATATCTC
* * *
77831412 AAATATATATAAATCTCAT
1 AAATAAATAAAAAACTCAT
77831431 AAATAAATAAAAAACTCAT
1 AAATAAATAAAAAACTCAT
77831450 A
1 A
77831451 TATTAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (19 bp):
AAATAAATAAAAAACTCAT
Found at i:77832125 original size:36 final size:36
Alignment explanation
Indices: 77832085--77832168 Score: 159
Period size: 36 Copynumber: 2.3 Consensus size: 36
77832075 AAGAGGAGAA
77832085 AGATCTGGAGCGAGAACGAGAGCTAGACGGGGAAGC
1 AGATCTGGAGCGAGAACGAGAGCTAGACGGGGAAGC
*
77832121 AGATCTGGAGCGAGAACGAGAGCTAGCCGGGGAAGC
1 AGATCTGGAGCGAGAACGAGAGCTAGACGGGGAAGC
77832157 AGATCTGGAGCG
1 AGATCTGGAGCG
77832169 GGACACAAAG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.31, C:0.18, G:0.42, T:0.10
Consensus pattern (36 bp):
AGATCTGGAGCGAGAACGAGAGCTAGACGGGGAAGC
Found at i:77839203 original size:25 final size:25
Alignment explanation
Indices: 77839172--77839222 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
77839162 AGTAATAACA
77839172 TTTTTTGAA-ATAATATGTTGACTTT
1 TTTTTTGAACA-AATATGTTGACTTT
*
77839197 TTTTTTGAACGAAATATGTTGGCTTT
1 TTTTTTGAAC-AAATATGTTGACTTT
77839223 ATTAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 9 0.39
26 13 0.57
27 1 0.04
ACGTcount: A:0.25, C:0.06, G:0.16, T:0.53
Consensus pattern (25 bp):
TTTTTTGAACAAATATGTTGACTTT
Done.