Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 27 of 427
Found at i:7155936 original size:11 final size:11
Alignment explanation
Indices: 7155920--7155958 Score: 51
Period size: 11 Copynumber: 3.3 Consensus size: 11
7155910 TTACAAACTA
7155920 TTTTTTTTTTG
1 TTTTTTTTTTG
7155931 TTTTTTTTTTG
1 TTTTTTTTTTG
7155942 TCTTTTTCTATTTG
1 T-TTTTT-T-TTTG
7155956 TTT
1 TTT
7155959 CTACTACTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 12 0.48
12 5 0.20
13 3 0.12
14 5 0.20
ACGTcount: A:0.03, C:0.05, G:0.08, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:7156768 original size:30 final size:27
Alignment explanation
Indices: 7156724--7156786 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 27
7156714 AAGGAATGAA
7156724 ATATATACATAATAGATTTGAAAAGAAAT
1 ATATATACATAATAGATTT-AAAA-AAAT
* *
7156753 ATATATACCTAAATAGATTTAAAAATAT
1 ATATATACAT-AATAGATTTAAAAAAAT
7156781 ATATAT
1 ATATAT
7156787 TTATATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 9 0.29
29 13 0.42
30 9 0.29
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (27 bp):
ATATATACATAATAGATTTAAAAAAAT
Found at i:7174324 original size:27 final size:27
Alignment explanation
Indices: 7174288--7174340 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
7174278 CATAACTCAT
* * **
7174288 AACCTTGAACCTTGAACTTTAAACTTG
1 AACCTCGAACCTCGAACCCTAAACTTG
7174315 AACCTCGAACCTCGAACCCTAAACTT
1 AACCTCGAACCTCGAACCCTAAACTT
7174341 TAAATCTCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.30, G:0.09, T:0.26
Consensus pattern (27 bp):
AACCTCGAACCTCGAACCCTAAACTTG
Found at i:7174616 original size:17 final size:18
Alignment explanation
Indices: 7174594--7174627 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7174584 TTGTTTATAA
7174594 TTTAAA-AAATTAATTAT
1 TTTAAATAAATTAATTAT
*
7174611 TTTAAATAATTTAATTA
1 TTTAAATAAATTAATTA
7174628 AAGTTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAATAAATTAATTAT
Found at i:7176431 original size:38 final size:37
Alignment explanation
Indices: 7176317--7176443 Score: 141
Period size: 37 Copynumber: 3.4 Consensus size: 37
7176307 GCAACATTAA
* *
7176317 TCATCAATAGAATGAGAATACAAGCAAGAAAGGTATGT
1 TCAT-AATAGAATGAGAATACAAGCAAGAAAGATATAT
*
7176355 TCGA-AATAGAAGGAGAATACTAA-CAAGAAAGATATAT
1 TC-ATAATAGAATGAGAATAC-AAGCAAGAAAGATATAT
* * *
7176392 TCATAATCGAATGAGAATACAAGCAAAAAAAAATATAT
1 TCATAATAGAATGAGAATACAAGC-AAGAAAGATATAT
*
7176430 TCATAATCGAATGA
1 TCATAATAGAATGA
7176444 AAATTATTGC
Statistics
Matches: 77, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
36 3 0.04
37 44 0.57
38 29 0.38
39 1 0.01
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (37 bp):
TCATAATAGAATGAGAATACAAGCAAGAAAGATATAT
Found at i:7177126 original size:19 final size:20
Alignment explanation
Indices: 7177099--7177140 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7177089 AAAATGGTCA
*
7177099 TTAAATTATT-ATTAATTTT
1 TTAAATTATTCATTAAGTTT
*
7177118 TTAATTTATTCATTAAGTTT
1 TTAAATTATTCATTAAGTTT
7177138 TTA
1 TTA
7177141 GAAATTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TTAAATTATTCATTAAGTTT
Found at i:7177489 original size:14 final size:14
Alignment explanation
Indices: 7177470--7177518 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
7177460 TCAATATTAC
7177470 ATAATTATTAAAAT
1 ATAATTATTAAAAT
*
7177484 ATAATTAATT-TAAT
1 ATAATT-ATTAAAAT
* *
7177498 ATTATTATCAAAAT
1 ATAATTATTAAAAT
7177512 ATAATTA
1 ATAATTA
7177519 ATTTTTATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
13 2 0.07
14 23 0.82
15 3 0.11
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
ATAATTATTAAAAT
Found at i:7178085 original size:11 final size:11
Alignment explanation
Indices: 7178069--7178099 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
7178059 AGTCGTAAAT
7178069 TTTGTTTCTAA
1 TTTGTTTCTAA
7178080 TTTGTTTCTAA
1 TTTGTTTCTAA
7178091 TTTGTTTCT
1 TTTGTTTCT
7178100 TGGAGTGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.13, C:0.10, G:0.10, T:0.68
Consensus pattern (11 bp):
TTTGTTTCTAA
Found at i:7179260 original size:25 final size:26
Alignment explanation
Indices: 7179212--7179261 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
7179202 TATCAAACTT
*
7179212 TCAATACGCACCGTTTTCATTAAACA
1 TCAAAACGCACCGTTTTCATTAAACA
* *
7179238 TCAAAACGTACCG-TTTCGTTAAAC
1 TCAAAACGCACCGTTTTCATTAAAC
7179262 TCTCAGCCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (26 bp):
TCAAAACGCACCGTTTTCATTAAACA
Found at i:7179998 original size:157 final size:162
Alignment explanation
Indices: 7179723--7180197 Score: 507
Period size: 170 Copynumber: 2.9 Consensus size: 162
7179713 CAAGAAAAGT
* * * *
7179723 GAATATAAACACATATATGTAGTATGGTTTCTTGAACTTGAATTAAATGAAG-ATCTAAAAAATA
1 GAATATAAACATATATATTTAGTATGGTTTCTTGAACTTGAATTAAATGAAGAATTTTAAAAATA
* ** *** *
7179787 ACAAAGAAACAAGAAAATCATTTAAAAAAAGAGAAAATTTTATGCCTTTGTTTATGGTTTCAGCT
66 ACAAAGAAACAAGAAAACCATTTAAAAAGGGAGAAAAAAGTATGCCTTTGTTTATGGTTTCGGCT
*
7179852 TGCTTGTGTAGCAAAAAAAA-A-AAA-A-A-C
131 TGCTTGTGTAGCAAAAAAAATATAAACATATA
* * *
7179879 GAATATAAACATATATATTTAGTATGGTTTCTTTAACTTGAATTTAATGAAGAATTTTAAAAACA
1 GAATATAAACATATATATTTAGTATGGTTTCTTGAACTTGAATTAAATGAAGAATTTTAAAAATA
* * *
7179944 ACAAAGAATCAAGAAAACCATTTAAAAAGGGAGAAAAAGGTATGCCTTTGTTTATGGTTTTGGCT
66 ACAAAGAAACAAGAAAACCATTTAAAAAGGGAGAAAAAAGTATGCCTTTGTTTATGGTTTCGGCT
* *
7180009 TGCTAGTGTTGCAAGAAAAGTGAATATAAACATATA
131 TGCTTGTGTAGCAA-AAAA---AATATAAACATATA
* * * *
7180045 TATATATATATATATATATATGTTAGTATGGTTTCTTGAATTTGAATTAAATTAAGAA-TTTAAA
1 GA-ATATA-A-ACATATATAT-TTAGTATGGTTTCTTGAACTTGAATTAAATGAAGAATTTTAAA
*** * **
7180109 AAGTGGGAAAGAAACAAGAAAACCATTTAAAAAAGGCA-AAAAAAGTATTTCTTTGTTTATGGTT
62 AA-TAACAAAGAAACAAGAAAACCATTT-AAAAAGGGAGAAAAAAGTATGCCTTTGTTTATGGTT
* * *
7180173 TCGGATTGCTTGTGTAACAAGAAAA
125 TCGGCTTGCTTGTGTAGCAAAAAAA
7180198 GTGAATATAA
Statistics
Matches: 263, Mismatches: 40, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
156 48 0.18
157 77 0.29
158 4 0.02
161 2 0.01
162 1 0.00
163 3 0.01
164 1 0.00
165 1 0.00
166 2 0.01
167 5 0.02
168 1 0.00
169 20 0.08
170 90 0.34
171 8 0.03
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (162 bp):
GAATATAAACATATATATTTAGTATGGTTTCTTGAACTTGAATTAAATGAAGAATTTTAAAAATA
ACAAAGAAACAAGAAAACCATTTAAAAAGGGAGAAAAAAGTATGCCTTTGTTTATGGTTTCGGCT
TGCTTGTGTAGCAAAAAAAATATAAACATATA
Found at i:7180047 original size:2 final size:2
Alignment explanation
Indices: 7180040--7180065 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7180030 GAATATAAAC
7180040 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7180066 GTTAGTATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7186054 original size:39 final size:39
Alignment explanation
Indices: 7185998--7186154 Score: 278
Period size: 39 Copynumber: 4.0 Consensus size: 39
7185988 CAAGACACTA
7185998 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
7186037 GGAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
7186076 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGTTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
7186115 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
7186154 G
1 G
7186155 TAATATAATT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.24
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:7189274 original size:32 final size:32
Alignment explanation
Indices: 7189233--7189296 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
7189223 GTAGCAAGAA
7189233 AAGTGAATATAAACAATATAGGTGATTCCTCC
1 AAGTGAATATAAACAATATAGGTGATTCCTCC
* *
7189265 AAGTGAATATAAACTATATATGTGATTCCTCC
1 AAGTGAATATAAACAATATAGGTGATTCCTCC
7189297 GTTGTTAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (32 bp):
AAGTGAATATAAACAATATAGGTGATTCCTCC
Found at i:7189695 original size:23 final size:23
Alignment explanation
Indices: 7189669--7189725 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
7189659 AAATTTTTTA
*
7189669 ATTTTTATAAATTTTCTTTATAT
1 ATTTTTATAAATTTTCTTTAGAT
*
7189692 ATTTTT-TAGAATTTTTTTTAGAT
1 ATTTTTATA-AATTTTCTTTAGAT
*
7189715 -TTTTTAAAAAT
1 ATTTTTATAAAT
7189726 ATATATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 10 0.34
23 19 0.66
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (23 bp):
ATTTTTATAAATTTTCTTTAGAT
Found at i:7193523 original size:20 final size:21
Alignment explanation
Indices: 7193495--7193533 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7193485 ATAATCTTCT
7193495 GAAAAATGA-CTTAGATAGAG
1 GAAAAATGATCTTAGATAGAG
*
7193515 GAAACATGATCTTAGATAG
1 GAAAAATGATCTTAGATAG
7193534 GGAGGCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.23
Consensus pattern (21 bp):
GAAAAATGATCTTAGATAGAG
Found at i:7196949 original size:46 final size:46
Alignment explanation
Indices: 7196899--7197074 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
7196889 TGGTTGAGCA
7196899 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7196945 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7196990 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7197038 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7197075 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7197055 original size:93 final size:93
Alignment explanation
Indices: 7196896--7197067 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7196886 GGATGGTTGA
* *
7196896 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7196961 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
7196989 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7197054 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
7197068 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7204529 original size:46 final size:46
Alignment explanation
Indices: 7204479--7204654 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
7204469 TGGTTGAGCA
7204479 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7204525 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7204570 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7204618 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7204655 GTGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7204635 original size:93 final size:93
Alignment explanation
Indices: 7204476--7204647 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7204466 GGATGGTTGA
* *
7204476 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7204541 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
7204569 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7204634 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
7204648 CTTATGGGTG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7218791 original size:20 final size:20
Alignment explanation
Indices: 7218766--7218811 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
7218756 CAGAAAATAA
7218766 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7218786 TTTCT-GAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7218805 TTTCTGG
1 TTTCTGG
7218812 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7219458 original size:20 final size:20
Alignment explanation
Indices: 7219426--7219463 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7219416 TGTTTCACAT
7219426 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
7219446 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
7219464 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:7219973 original size:18 final size:18
Alignment explanation
Indices: 7219950--7219989 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7219940 TACTTTTCTC
7219950 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
7219968 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
7219986 TTTC
1 TTTC
7219990 CTTTTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:7225878 original size:15 final size:14
Alignment explanation
Indices: 7225811--7225887 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 14
7225801 ATTATTATTA
7225811 TTTATTAT-TAT-T
1 TTTATTATATATGT
*
7225823 ATTATTAT-TAT-T
1 TTTATTATATATGT
*
7225835 ATTATTAT-TAT-T
1 TTTATTATATATGT
*
7225847 ATTATTAT-TAT-T
1 TTTATTATATATGT
*
7225859 ATTATTAGTATATGT
1 TTTATTA-TATATGT
7225874 TTTATTATATATGT
1 TTTATTATATATGT
7225888 ATATATCTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
12 42 0.70
13 1 0.02
14 10 0.17
15 7 0.12
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (14 bp):
TTTATTATATATGT
Found at i:7225881 original size:3 final size:3
Alignment explanation
Indices: 7225800--7225865 Score: 123
Period size: 3 Copynumber: 21.7 Consensus size: 3
7225790 TTACTACTAC
7225800 TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7225846 TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TA
7225866 GTATATGTTT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 59 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7226035 original size:11 final size:11
Alignment explanation
Indices: 7226019--7226103 Score: 76
Period size: 11 Copynumber: 8.1 Consensus size: 11
7226009 CATACTATTC
7226019 TATGTATATAT
1 TATGTATATAT
7226030 TATGTATATATTT
1 TATGTATATA--T
*
7226043 TATGTATATGT
1 TATGTATATAT
7226054 TATGTATATA-
1 TATGTATATAT
*
7226064 TAT-TTTAATAT
1 TATGTAT-ATAT
7226075 TAT-T-TATA-
1 TATGTATATAT
7226083 TA--TATATAT
1 TATGTATATAT
7226092 TATGTATATAT
1 TATGTATATAT
7226103 T
1 T
7226104 TTTAAATATC
Statistics
Matches: 63, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
7 1 0.02
8 6 0.10
9 7 0.11
10 7 0.11
11 32 0.51
13 10 0.16
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (11 bp):
TATGTATATAT
Found at i:7226039 original size:13 final size:13
Alignment explanation
Indices: 7226023--7226102 Score: 80
Period size: 13 Copynumber: 6.4 Consensus size: 13
7226013 CTATTCTATG
7226023 TATATATTATGTA
1 TATATATTATGTA
*
7226036 TATATTTTATG--
1 TATATATTATGTA
*
7226047 TATATGTTATGTA
1 TATATATTATGTA
7226060 TATATATT-T-TA
1 TATATATTATGTA
*
7226071 -ATATTATTTATATA
1 TATA-TA-TTATGTA
7226085 TATATATTATGTA
1 TATATATTATGTA
7226098 TATAT
1 TATAT
7226103 TTTTAAATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
10 3 0.05
11 14 0.25
12 3 0.05
13 29 0.52
14 4 0.07
15 3 0.05
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.57
Consensus pattern (13 bp):
TATATATTATGTA
Found at i:7226098 original size:38 final size:36
Alignment explanation
Indices: 7226019--7226108 Score: 112
Period size: 38 Copynumber: 2.5 Consensus size: 36
7226009 CATACTATTC
* * *
7226019 TATGTATATATTATGT-ATA-TATTTTATGTATATGT
1 TATGTATATATT-TTTAATATTATTTTATATATATAT
7226054 TATGTATATATATTTTAATATTATTTATATATATATAT
1 TATGTATATAT-TTTTAATATTATTT-TATATATATAT
7226092 TATGTATATATTTTTAA
1 TATGTATATATTTTTAA
7226109 ATATCATACT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
35 13 0.27
36 4 0.08
37 11 0.23
38 20 0.42
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (36 bp):
TATGTATATATTTTTAATATTATTTTATATATATAT
Found at i:7226257 original size:21 final size:21
Alignment explanation
Indices: 7226227--7226278 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
7226217 ATCCTTATTA
*
7226227 TTATTA-ATAT-TAGTATATGT
1 TTATTATATATGTA-TATATCT
7226247 TTATTATATATGTATATATCT
1 TTATTATATATGTATATATCT
*
7226268 TTAATATATAT
1 TTATTATATAT
7226279 CTTTAATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 6 0.21
21 20 0.71
22 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (21 bp):
TTATTATATATGTATATATCT
Found at i:7226292 original size:15 final size:13
Alignment explanation
Indices: 7226259--7226291 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
7226249 ATTATATATG
7226259 TATATATCTTTAA
1 TATATATCTTTAA
7226272 TATATATCTTTAA
1 TATATATCTTTAA
7226285 TATATAT
1 TATATAT
7226292 AGGTATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (13 bp):
TATATATCTTTAA
Found at i:7226366 original size:11 final size:11
Alignment explanation
Indices: 7226350--7226418 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
7226340 TTATTTCTAA
7226350 TATGTATATAT
1 TATGTATATAT
*
7226361 TATGTAGATAT
1 TATGTATATAT
* *
7226372 TTTAATATTATAT
1 TAT-GTA-TATAT
7226385 TATGTATATGCAT
1 TATGTATAT--AT
*
7226398 T-TTTATATAT
1 TATGTATATAT
*
7226408 TACGTATATAT
1 TATGTATATAT
7226419 ATACCTTTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
10 3 0.07
11 22 0.50
12 10 0.23
13 9 0.20
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.54
Consensus pattern (11 bp):
TATGTATATAT
Found at i:7226542 original size:25 final size:25
Alignment explanation
Indices: 7226520--7226633 Score: 76
Period size: 27 Copynumber: 4.6 Consensus size: 25
7226510 TTAATAACTA
* *
7226520 TATATTATGTATGTATTTTTAACAT
1 TATACTATGTATATATTTTTAACAT
7226545 TATACTATGTATATA-TTTT----T
1 TATACTATGTATATATTTTTAACAT
* *
7226565 TATACTATGTATATACTTTGTAATAT
1 TATACTATGTATATA-TTTTTAACAT
* * * *
7226591 TATTATTATGTTTATATTTTAAATAT
1 TA-TACTATGTATATATTTTTAACAT
*
7226617 ATATACGTATGTGTATA
1 -TATAC-TATGTATATA
7226634 GGTAACATTA
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
20 16 0.23
22 3 0.04
24 4 0.06
25 13 0.18
26 13 0.18
27 22 0.31
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.54
Consensus pattern (25 bp):
TATACTATGTATATATTTTTAACAT
Found at i:7226574 original size:45 final size:47
Alignment explanation
Indices: 7226520--7226610 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 47
7226510 TTAATAACTA
* * *
7226520 TATATTATGTATGTA-TTTTTAACATTA-TACTATGTATATATTTTT
1 TATACTATGTATATACTTTGTAACATTATTACTATGTATATATTTTT
* * *
7226565 TATACTATGTATATACTTTGTAATATTATTATTATGTTTATATTTT
1 TATACTATGTATATACTTTGTAACATTATTACTATGTATATATTTT
7226611 AAATATATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 13 0.34
46 10 0.26
47 15 0.39
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (47 bp):
TATACTATGTATATACTTTGTAACATTATTACTATGTATATATTTTT
Found at i:7230417 original size:111 final size:111
Alignment explanation
Indices: 7230223--7230445 Score: 394
Period size: 111 Copynumber: 2.0 Consensus size: 111
7230213 ATAAGACAGT
* * *
7230223 TATAAACAGAGTTTTCCACAGGCCAGCCACCCTAGCAATTCGTCAAGACAAACAGAAGTTCATAC
1 TATAAACAGAGTTTTCCACAAGCCAGCCACCCTAACAATTCATCAAGACAAACAGAAGTTCATAC
*
7230288 GAGGGCATTTTCAGGGAAGTAGAATACAAGCAATGGAAAAATCAAC
66 GAGGGCATATTCAGGGAAGTAGAATACAAGCAATGGAAAAATCAAC
7230334 TATAAACAGAGTTTTCCACAAGCCAGCCACCC-AACAATTCATCAAGACAAACAGAAGTTCATAC
1 TATAAACAGAGTTTTCCACAAGCCAGCCACCCTAACAATTCATCAAGACAAACAGAAGTTCATAC
7230398 GAGGGGCATATTCAGGGAAGTAGAATACAAGCAATGGAAAAATCAAC
66 GA-GGGCATATTCAGGGAAGTAGAATACAAGCAATGGAAAAATCAAC
7230445 T
1 T
7230446 TGCCTATTAT
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
110 32 0.30
111 75 0.70
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.18
Consensus pattern (111 bp):
TATAAACAGAGTTTTCCACAAGCCAGCCACCCTAACAATTCATCAAGACAAACAGAAGTTCATAC
GAGGGCATATTCAGGGAAGTAGAATACAAGCAATGGAAAAATCAAC
Found at i:7230919 original size:27 final size:27
Alignment explanation
Indices: 7230888--7230954 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
7230878 ATTATTATAA
*
7230888 AATTGCAAATTCTCAACTGTATAATAC
1 AATTGCAAATTCCCAACTGTATAATAC
7230915 AATTGCAAATTCCCAACTGTATAATAC
1 AATTGCAAATTCCCAACTGTATAATAC
7230942 AATTGCAAATTCC
1 AATTGCAAATTCC
7230955 AAGTCTTTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTGCAAATTCCCAACTGTATAATAC
Found at i:7233211 original size:3 final size:3
Alignment explanation
Indices: 7233197--7233332 Score: 109
Period size: 3 Copynumber: 45.3 Consensus size: 3
7233187 AACAAAATTG
* *
7233197 ATA ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CCT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* * * * * *
7233242 ATG ATA CTA ATA ATA GTA ATA ATA AGA A-A ATTA ATA TTA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
* * *
7233287 ATA ATA ATGGA A-A ATA ATA ATA ACA ATG ATA AT- ATA GTA ATA ATA
1 ATA ATA AT--A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7233332 A
1 A
7233333 AAGTGAAATT
Statistics
Matches: 105, Mismatches: 20, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
2 7 0.07
3 93 0.89
4 3 0.03
5 2 0.02
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7233433 original size:24 final size:23
Alignment explanation
Indices: 7233406--7233452 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
7233396 GATAGGAAAT
*
7233406 AATAATATGGTAAAAGAAAATAAC
1 AATAATATGATAAAA-AAAATAAC
*
7233430 AATAATATGATAATAAAAATAAC
1 AATAATATGATAAAAAAAATAAC
7233453 GGTGGTAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.23
Consensus pattern (23 bp):
AATAATATGATAAAAAAAATAAC
Found at i:7233750 original size:12 final size:12
Alignment explanation
Indices: 7233731--7233778 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
7233721 TATAGATTAG
7233731 AATA-TAATAAT
1 AATAGTAATAAT
7233742 AATAGTAATAAT
1 AATAGTAATAAT
**
7233754 AATAG-ATATAGC
1 AATAGTA-ATAAT
7233766 AATAGTAATAAT
1 AATAGTAATAAT
7233778 A
1 A
7233779 GTAATGGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 5 0.17
12 24 0.80
13 1 0.03
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.31
Consensus pattern (12 bp):
AATAGTAATAAT
Found at i:7233927 original size:21 final size:20
Alignment explanation
Indices: 7233898--7233951 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
7233888 TAATACTTCA
*
7233898 TAAATATATACATATATATAT
1 TAAACATATACATATATA-AT
*
7233919 TAAAGATATATACATATATAAT
1 T-AA-ACATATACATATATAAT
*
7233941 AAAACATATAC
1 TAAACATATAC
7233952 TAATATTAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 7 0.24
21 3 0.10
22 4 0.14
23 15 0.52
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (20 bp):
TAAACATATACATATATAAT
Found at i:7234019 original size:22 final size:22
Alignment explanation
Indices: 7233994--7234038 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7233984 ATAGATATAA
*
7233994 TAATAGGTATATAACATGGTAT
1 TAATAGGTATATAACATAGTAT
* * *
7234016 TAATATGTGTATAATATAGTAT
1 TAATAGGTATATAACATAGTAT
7234038 T
1 T
7234039 TAAATGTGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.16, T:0.42
Consensus pattern (22 bp):
TAATAGGTATATAACATAGTAT
Found at i:7236957 original size:11 final size:11
Alignment explanation
Indices: 7236941--7236966 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7236931 AAAGTTTTCC
7236941 TTTTTTTATTT
1 TTTTTTTATTT
7236952 TTTTTTTATTT
1 TTTTTTTATTT
7236963 TTTT
1 TTTT
7236967 ATATACATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:7241992 original size:262 final size:263
Alignment explanation
Indices: 7241436--7242081 Score: 902
Period size: 262 Copynumber: 2.5 Consensus size: 263
7241426 GGAAGAACAT
* * * * *
7241436 AGCAACAACAACTGGCAAAAAAAGATTAGAATAAGATTTATAATGATAAATGTGAAGGCACATAT
1 AGCAAGAACAACTGGCAAAAAAAGATTAGAAGAAGATTTGTAATGATCAACGTGAAGGCACATA-
* *
7241501 GTCTCGGACTATAAATCATGCTTGCACAACATTTGATGTCAAGAAGTTATCAATACTTACTTTCA
65 GTCTCGGACTATAAATCATGCTTGCACAACATTTGATCTCAACAAGTTATCAATACTTACTTTCA
* * *
7241566 CATGTGTAAGTACATTATTCTTCCCTCAAGCTTTGGTTGTACGTGTAAAAAGCAAAAGGAGGTTC
130 CATGTGTAAGTACATTATTCTTCCCTCAAGCTTTGGTTGAACGCGTAAAAAGCAAAAGGAGGTCC
* *
7241631 CTCAATATTCTGTAAAAGGCAAACACGTAAATACACCGTATAAAGTATGAGGAATCATTACCCTT
195 CTCAATATTCTATAAAAGGCAAACACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTT
*
7241696 CTGA
260 CTAA
* * * * * *
7241700 AGCAAGAATAGCTGGCAAAAAAAGATTAGAAGAAGATTTGTAATGGTCAACGAGAAGGCCCGTA-
1 AGCAAGAACAACTGGCAAAAAAAGATTAGAAGAAGATTTGTAATGATCAACGTGAAGGCACATAG
* * * * * * *
7241764 TCTCAGACTATAAATCGTGCTTGTACAACATTTGGTCTCAACAAGCTATCAATACTTATTTTCAT
66 TCTCGGACTATAAATCATGCTTGCACAACATTTGATCTCAACAAGTTATCAATACTTACTTTCAC
* * *
7241829 GTGTGTAAGTACATTATTCTTCCCTCAAGCTTTGGTTGAATGCGTGAAAAGCAAAAGGAGGCTCC
131 ATGTGTAAGTACATTATTCTTCCCTCAAGCTTTGGTTGAACGCGTAAAAAGCAAAAGGAGG-TCC
* * * * * * *
7241894 CTCAATATTCTATGAAGGGCAAATATGTAAATACACCGCATAAGGTATG-GCGAATTATTACCTT
195 CTCAATATTCTATAAAAGGCAAACACGTAAATACACCGCATAAAGTATGAG-GAATCATTACCCT
7241958 TCTAA
259 TCTAA
7241963 AGCAAGAACAACTGGCAAAAAAA-ATTAGAAGAAGATTTGTAATGATCAACGTGAAGGCACATAT
1 AGCAAGAACAACTGGCAAAAAAAGATTAGAAGAAGATTTGTAATGATCAACGTGAAGGCACATA-
*
7242027 GTCTCGGACTATAAATCATGCTTGCACAACATTTGCTCTCAACAAGTTATCAATA
65 GTCTCGGACTATAAATCATGCTTGCACAACATTTGATCTCAACAAGTTATCAATA
7242082 TTGAACTTGT
Statistics
Matches: 331, Mismatches: 47, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
262 149 0.45
263 80 0.24
264 102 0.31
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (263 bp):
AGCAAGAACAACTGGCAAAAAAAGATTAGAAGAAGATTTGTAATGATCAACGTGAAGGCACATAG
TCTCGGACTATAAATCATGCTTGCACAACATTTGATCTCAACAAGTTATCAATACTTACTTTCAC
ATGTGTAAGTACATTATTCTTCCCTCAAGCTTTGGTTGAACGCGTAAAAAGCAAAAGGAGGTCCC
TCAATATTCTATAAAAGGCAAACACGTAAATACACCGCATAAAGTATGAGGAATCATTACCCTTC
TAA
Found at i:7244472 original size:39 final size:39
Alignment explanation
Indices: 7244294--7244456 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
7244284 GCTCTGGTGA
* *
7244294 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
7244333 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGAACTTGTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
7244372 GCTTCAGTCAGCCTTTGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * * * *
7244411 ACTTTAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
7244450 GCTTCAG
1 GCTTCAG
7244457 CTAAACTTTG
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.37
Consensus pattern (39 bp):
GCTTCAGTCAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:7245750 original size:12 final size:12
Alignment explanation
Indices: 7245733--7245758 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7245723 AACAAATACC
7245733 TGAAAGAAAATA
1 TGAAAGAAAATA
7245745 TGAAAGAAAATA
1 TGAAAGAAAATA
7245757 TG
1 TG
7245759 CTGAGGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (12 bp):
TGAAAGAAAATA
Found at i:7246300 original size:21 final size:21
Alignment explanation
Indices: 7246276--7246319 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
7246266 TTGCCAAGAG
*
7246276 TTTCACCATTTCACTTCAGCA
1 TTTCACCATTTCACCTCAGCA
7246297 TTTCACCATTTCACCTCAGCA
1 TTTCACCATTTCACCTCAGCA
7246318 TT
1 TT
7246320 GAAGACTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.34, G:0.05, T:0.39
Consensus pattern (21 bp):
TTTCACCATTTCACCTCAGCA
Found at i:7249129 original size:197 final size:197
Alignment explanation
Indices: 7248794--7249189 Score: 666
Period size: 197 Copynumber: 2.0 Consensus size: 197
7248784 CACAATGATA
* **
7248794 AAATTTCTAAACAAAATGTAATCCAATCAAATTTGTTACCTTATACCAATGGTTTCATCATACTA
1 AAATTTCTAAACAAAATATAATCCAATCAAATTTGTTACCCCATACCAATGGTTTCATCATACTA
* *
7248859 AATATCATATCATATATTATAAACATGTCACAAAAGTTACTATAATTTAAAATTCATTGACCACT
66 AATATCATATCATATATTACAAACATGTCACAAAAGTTACTATAATTTAAAATTCATTGACAACT
* * *
7248924 CATTTTACTAATGGCTTCCTTCTTCTTCTTATTCTTTCTTTACTATTTCTATGCAAATAAGTAAA
131 CATTTTACTAATAGCTTCATTCTTCTTCTTATTCTTTCTTCACTATTTCTATGCAAATAAGTAAA
7248989 GT
196 GT
*
7248991 AAATTTCTAAACAAAATATACTCCAATCAAATTTGTTACCCCATACCAATGGTTTCATCATACTA
1 AAATTTCTAAACAAAATATAATCCAATCAAATTTGTTACCCCATACCAATGGTTTCATCATACTA
* * *
7249056 AATATCATATCATATATTACAAACATGTCACAAAAGTTACTGTAATTTAAAATTCTTTTACAACT
66 AATATCATATCATATATTACAAACATGTCACAAAAGTTACTATAATTTAAAATTCATTGACAACT
* *
7249121 CATTTTACTAATAGCTTCATTTTTCTTCTTATTCTTTCTTCACTATTTCTGTGCAAATAAGTAAA
131 CATTTTACTAATAGCTTCATTCTTCTTCTTATTCTTTCTTCACTATTTCTATGCAAATAAGTAAA
7249186 GT
196 GT
7249188 AA
1 AA
7249190 GTCAAAAGCA
Statistics
Matches: 185, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
197 185 1.00
ACGTcount: A:0.36, C:0.18, G:0.06, T:0.40
Consensus pattern (197 bp):
AAATTTCTAAACAAAATATAATCCAATCAAATTTGTTACCCCATACCAATGGTTTCATCATACTA
AATATCATATCATATATTACAAACATGTCACAAAAGTTACTATAATTTAAAATTCATTGACAACT
CATTTTACTAATAGCTTCATTCTTCTTCTTATTCTTTCTTCACTATTTCTATGCAAATAAGTAAA
GT
Found at i:7249943 original size:20 final size:19
Alignment explanation
Indices: 7249900--7249944 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7249890 TTGTAAGTAC
*
7249900 AATTAAATATTTAAAATGTA
1 AATT-AATATTTAAAATCTA
*
7249920 AATTAATATTTTAAATCTA
1 AATTAATATTTAAAATCTA
7249939 TAATTA
1 -AATTA
7249945 CAACACAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
AATTAATATTTAAAATCTA
Found at i:7250087 original size:29 final size:27
Alignment explanation
Indices: 7250010--7250087 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 27
7250000 TAACATTTTT
7250010 TTTCTCAATTTAATCCTCATA-TCACTA
1 TTTCTCAATTTAATCC-CATATTCACTA
* *
7250037 TTTCTCAATTTAGTCCCAATATGTCAAT-
1 TTTCTCAATTTAATCCC-ATAT-TCACTA
7250065 TATTCTCAATTTAATCCACATAT
1 T-TTCTCAATTTAATCC-CATAT
7250088 CTCATAACAT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
26 1 0.02
27 18 0.42
28 1 0.02
29 22 0.51
30 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.03, T:0.44
Consensus pattern (27 bp):
TTTCTCAATTTAATCCCATATTCACTA
Found at i:7256663 original size:31 final size:31
Alignment explanation
Indices: 7256628--7256743 Score: 132
Period size: 31 Copynumber: 3.9 Consensus size: 31
7256618 TTTACTCTTC
* *
7256628 TCTCTCATTTTGTTTTCTCTGCTTTCAAAAT
1 TCTCTCATCTTATTTTCTCTGCTTTCAAAAT
*
7256659 TCTCTCA---T-TTTTCTCTGCTCTCAAAAT
1 TCTCTCATCTTATTTTCTCTGCTTTCAAAAT
* * *
7256686 TCTCTCGTCTTAATTTCTCTGCTTTCAAAGT
1 TCTCTCATCTTATTTTCTCTGCTTTCAAAAT
* *
7256717 TTTCTCATCTTATTTTCTTTGCTTTCA
1 TCTCTCATCTTATTTTCTCTGCTTTCA
7256744 GAGTACTTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
27 24 0.33
28 1 0.01
30 1 0.01
31 46 0.64
ACGTcount: A:0.16, C:0.25, G:0.06, T:0.53
Consensus pattern (31 bp):
TCTCTCATCTTATTTTCTCTGCTTTCAAAAT
Found at i:7256670 original size:27 final size:27
Alignment explanation
Indices: 7256640--7256724 Score: 98
Period size: 27 Copynumber: 3.0 Consensus size: 27
7256630 TCTCATTTTG
7256640 TTTTCTCTGCTTTCAAAATTCTCTCAT
1 TTTTCTCTGCTTTCAAAATTCTCTCAT
* *
7256667 TTTTCTCTGCTCTCAAAATTCTCTCGTCT
1 TTTTCTCTGCTTTCAAAATTCTCTC--AT
* *
7256696 TAATTTCTCTGCTTTCAAAGTTTTCTCAT
1 T--TTTCTCTGCTTTCAAAATTCTCTCAT
7256725 CTTATTTTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
27 24 0.50
29 3 0.06
31 21 0.44
ACGTcount: A:0.18, C:0.26, G:0.06, T:0.51
Consensus pattern (27 bp):
TTTTCTCTGCTTTCAAAATTCTCTCAT
Found at i:7257538 original size:8 final size:8
Alignment explanation
Indices: 7257498--7257557 Score: 56
Period size: 8 Copynumber: 7.9 Consensus size: 8
7257488 TTGAAAAAGA
*
7257498 AAAAAATT
1 AAAAAATG
7257506 AAAAAATG
1 AAAAAATG
7257514 AGAAAAATG
1 A-AAAAATG
7257523 --AAAA-G
1 AAAAAATG
*
7257528 AAAAATTG
1 AAAAAATG
*
7257536 AAAAAATA
1 AAAAAATG
7257544 AAAAAAT-
1 AAAAAATG
7257551 AAAAAAT
1 AAAAAAT
7257558 TTGTAATTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
5 1 0.02
6 4 0.09
7 10 0.23
8 22 0.50
9 7 0.16
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (8 bp):
AAAAAATG
Found at i:7257548 original size:29 final size:29
Alignment explanation
Indices: 7257499--7257555 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
7257489 TGAAAAAGAA
* *
7257499 AAAAATTAAAAAATGAGAAAAATGAAAAG
1 AAAAATTAAAAAATGAAAAAAATAAAAAG
7257528 AAAAATTGAAAAAAT-AAAAAAATAAAAA
1 AAAAATT-AAAAAATGAAAAAAATAAAAA
7257556 ATTTGTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (29 bp):
AAAAATTAAAAAATGAAAAAAATAAAAAG
Found at i:7259056 original size:23 final size:23
Alignment explanation
Indices: 7259021--7259073 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
7259011 TACATTTTGT
* *
7259021 AAAAAATAAAAAAATTAAGAA-TA
1 AAAAAAGAAAAAAAATAA-AATTA
*
7259044 AAAAAAGAGAAAAAATAAAATTA
1 AAAAAAGAAAAAAAATAAAATTA
7259067 AAAAAAG
1 AAAAAAG
7259074 CACTATTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 2 0.08
23 24 0.92
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (23 bp):
AAAAAAGAAAAAAAATAAAATTA
Found at i:7276168 original size:61 final size:61
Alignment explanation
Indices: 7276073--7276237 Score: 187
Period size: 61 Copynumber: 2.7 Consensus size: 61
7276063 TATGATAGCA
7276073 TGTCTTATTTAATTGGGAAAAAGGAAGACTAGGAAAATAATTTATTTTAAAA-TATAAAATC
1 TGTCTTATTTAATTGGGAAAAAGGAAGACTAGGAAAATAATTTA-TTTAAAAGTATAAAATC
* * *
7276134 TGTCTTATTTAATT-GGAGAAAAGGAAGACTAGGAAATTATTTTATTTAAAAGTAT--ATTGC
1 TGTCTTATTTAATTGGGA-AAAAGGAAGACTAGGAAAATAATTTATTTAAAAGTATAAAAT-C
*
7276194 ATGTCTTACTTT-TTTGGGACAAAAAAGGAAGACTAGGAAAATAA
1 -TGTCTTA-TTTAATTGGG---AAAAAGGAAGACTAGGAAAATAA
7276238 AAGCAAGAAT
Statistics
Matches: 89, Mismatches: 6, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
59 2 0.02
60 11 0.12
61 50 0.56
62 5 0.06
64 20 0.22
65 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (61 bp):
TGTCTTATTTAATTGGGAAAAAGGAAGACTAGGAAAATAATTTATTTAAAAGTATAAAATC
Found at i:7276536 original size:13 final size:13
Alignment explanation
Indices: 7276518--7276546 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7276508 AAGACTAGGA
7276518 AAATAATTTATTT
1 AAATAATTTATTT
7276531 AAATAATTTATTT
1 AAATAATTTATTT
7276544 AAA
1 AAA
7276547 AGTATTTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
AAATAATTTATTT
Found at i:7277028 original size:30 final size:30
Alignment explanation
Indices: 7276985--7277041 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7276975 AAATAAGAGA
7276985 AAAAAATTCTCTAATTTGATGT-ATTGATAC
1 AAAAAATTCTCTAATTT-ATGTAATTGATAC
* *
7277015 AAAACATTTTCTAATTTATGTAATTGA
1 AAAAAATTCTCTAATTTATGTAATTGA
7277042 GTAATGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (30 bp):
AAAAAATTCTCTAATTTATGTAATTGATAC
Found at i:7279660 original size:52 final size:52
Alignment explanation
Indices: 7279593--7279715 Score: 192
Period size: 52 Copynumber: 2.3 Consensus size: 52
7279583 ATACTCATTA
*
7279593 TTTTGTATTTATCTATAATTTGGACAAAATAGCAAATGAGAAGAGAGAGTAACC
1 TTTTG-ATTT-TCTATAATTTGGACAAAATAGCAAATGAAAAGAGAGAGTAACC
7279647 TTTTGATTTTCTATAATTTGGACAAAATAGCAAATGAAAAGAGAGAGTAACC
1 TTTTGATTTTCTATAATTTGGACAAAATAGCAAATGAAAAGAGAGAGTAACC
**
7279699 TTTCAATTTTCTTATAA
1 TTTTGATTTTC-TATAA
7279716 AAAACAATTA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
52 51 0.78
53 9 0.14
54 5 0.08
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (52 bp):
TTTTGATTTTCTATAATTTGGACAAAATAGCAAATGAAAAGAGAGAGTAACC
Found at i:7281519 original size:49 final size:49
Alignment explanation
Indices: 7281462--7281560 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
7281452 GGCCTGTGTT
*
7281462 TCTCTGTTCTTCATTTTTCCTCCCATTCATACATGACTACAAGGTATGA
1 TCTCTGTTCTTCATTTTTCCTCACATTCATACATGACTACAAGGTATGA
7281511 TCTCTGTTCTTCATTTTTCCTCACATTCATACATGACTACAAGGTATGA
1 TCTCTGTTCTTCATTTTTCCTCACATTCATACATGACTACAAGGTATGA
7281560 T
1 T
7281561 TTTTGGCATG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.23, C:0.25, G:0.10, T:0.41
Consensus pattern (49 bp):
TCTCTGTTCTTCATTTTTCCTCACATTCATACATGACTACAAGGTATGA
Found at i:7285794 original size:5 final size:5
Alignment explanation
Indices: 7285784--7285809 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7285774 ATGTGAATTG
7285784 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
7285810 CCAAAAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:7290001 original size:16 final size:16
Alignment explanation
Indices: 7289980--7290010 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7289970 TTTAAAAATA
*
7289980 ATATATATTTTTATTT
1 ATATATATGTTTATTT
7289996 ATATATATGTTTATT
1 ATATATATGTTTATT
7290011 GTTCATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
ATATATATGTTTATTT
Found at i:7290764 original size:10 final size:10
Alignment explanation
Indices: 7290722--7290767 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
7290712 TAATTTTATG
7290722 ATTTAT-TTT
1 ATTTATCTTT
*
7290731 CATTTATCTTC
1 -ATTTATCTTT
7290742 ATTTATCTTT
1 ATTTATCTTT
7290752 ATTTAT-TTGT
1 ATTTATCTT-T
7290762 ATTTAT
1 ATTTAT
7290768 ATTTTAGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 2 0.06
10 28 0.88
11 2 0.06
ACGTcount: A:0.22, C:0.09, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:7291553 original size:2 final size:2
Alignment explanation
Indices: 7291546--7291571 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7291536 TATAAACCTA
7291546 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7291572 CAAATAGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7295015 original size:26 final size:25
Alignment explanation
Indices: 7294986--7295036 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
7294976 ATCAATTTCT
7294986 TTTAGTCAA-TTTATTTTTATAAAAAA
1 TTTA-TCAAGTTT-TTTTTATAAAAAA
*
7295012 TTTATGAAGTTTTTTTTATAAAAAA
1 TTTATCAAGTTTTTTTTATAAAAAA
7295037 ACCCATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (25 bp):
TTTATCAAGTTTTTTTTATAAAAAA
Found at i:7295644 original size:26 final size:26
Alignment explanation
Indices: 7295615--7295664 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
7295605 ATCAACAAAT
*
7295615 TATTTAAAATAATTAATAATATTAAA
1 TATTTAAAATAACTAATAATATTAAA
* **
7295641 TATTTGACGTAACTAATAATATTA
1 TATTTAAAATAACTAATAATATTA
7295665 TAAAGATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (26 bp):
TATTTAAAATAACTAATAATATTAAA
Found at i:7302117 original size:39 final size:40
Alignment explanation
Indices: 7302062--7302141 Score: 108
Period size: 39 Copynumber: 2.0 Consensus size: 40
7302052 TCAAATACAT
7302062 TTAAAACAAATATTAAAACAAGAAACAAA-TAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAATATA
* * * * *
7302101 TTAAAACAATTCTTAAAACAATACACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATTAAAAATATA
7302141 T
1 T
7302142 AATAAAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
39 25 0.71
40 10 0.29
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.25
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATTAAAAATATA
Found at i:7302177 original size:40 final size:41
Alignment explanation
Indices: 7302127--7302211 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
7302117 AACAATACAC
*
7302127 AAATTGAAAATATATAATA-AAAAATAATTAT-ATTAAAATTA
1 AAATTGAAAATATA-AATATAAAAATAAATATAATTAAAA-TA
*
7302168 AAATT-AAAATATAAATATAAATATAAATATAATTAAAATA
1 AAATTGAAAATATAAATATAAAAATAAATATAATTAAAATA
7302208 AAAT
1 AAAT
7302212 ATATATATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
39 4 0.10
40 24 0.60
41 12 0.30
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (41 bp):
AAATTGAAAATATAAATATAAAAATAAATATAATTAAAATA
Found at i:7302183 original size:6 final size:6
Alignment explanation
Indices: 7302174--7302225 Score: 63
Period size: 6 Copynumber: 9.0 Consensus size: 6
7302164 ATTAAAATTA
* *
7302174 AAATAT AAATAT AAATAT AAATAT AATTA- AAATA- AAATAT ATATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
*
7302220 ATATAT
1 AAATAT
7302226 TTATTATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
5 9 0.21
6 33 0.79
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
AAATAT
Found at i:7302189 original size:18 final size:18
Alignment explanation
Indices: 7302162--7302214 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
7302152 AATTATATTA
7302162 AAATTAAAAT-TAAAATAT
1 AAATTAAAATAT-AAATAT
7302180 AAA-TATAAATATAAATAT
1 AAATTA-AAATATAAATAT
7302198 -AATTAAAATA-AAATAT
1 AAATTAAAATATAAATAT
7302214 A
1 A
7302215 TATATATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
16 6 0.19
17 9 0.29
18 15 0.48
19 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATTAAAATATAAATAT
Found at i:7302477 original size:16 final size:16
Alignment explanation
Indices: 7302456--7302488 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7302446 AATGAAAAAT
*
7302456 TAAAAATTAAAAATAA
1 TAAAAAATAAAAATAA
7302472 TAAAAAATAAAAATAA
1 TAAAAAATAAAAATAA
7302488 T
1 T
7302489 GAAACAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
TAAAAAATAAAAATAA
Found at i:7302477 original size:24 final size:24
Alignment explanation
Indices: 7302439--7302485 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
7302429 ATTTATATTA
*
7302439 AAAAGATAATGAAAAATTAAAAATT
1 AAAAGATAAT-AAAAAATAAAAATT
7302464 AAAA-ATAATAAAAAATAAAAAT
1 AAAAGATAATAAAAAATAAAAAT
7302486 AATGAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
24 5 0.24
25 4 0.19
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.21
Consensus pattern (24 bp):
AAAAGATAATAAAAAATAAAAATT
Found at i:7302680 original size:15 final size:16
Alignment explanation
Indices: 7302656--7302685 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7302646 TAGGTTTAAT
7302656 ATTAACAAATTTATTC
1 ATTAACAAATTTATTC
7302672 ATTAA-AAATTTATT
1 ATTAACAAATTTATT
7302686 TAAAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTAACAAATTTATTC
Found at i:7304239 original size:22 final size:22
Alignment explanation
Indices: 7304211--7304257 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
7304201 TTTTTATTAA
7304211 AGCCACCATGTGTAACAATCAC
1 AGCCACCATGTGTAACAATCAC
7304233 AGCCACCATGTGTAACAATCAC
1 AGCCACCATGTGTAACAATCAC
7304255 AGC
1 AGC
7304258 GTGACATGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.15, T:0.17
Consensus pattern (22 bp):
AGCCACCATGTGTAACAATCAC
Found at i:7304582 original size:10 final size:10
Alignment explanation
Indices: 7304569--7304649 Score: 51
Period size: 10 Copynumber: 8.3 Consensus size: 10
7304559 TTTTGATGCA
*
7304569 TTTTATAATT
1 TTTTATAAAT
*
7304579 TTTTAT-GAT
1 TTTTATAAAT
*
7304588 TTTTATAAAA
1 TTTTATAAAT
* *
7304598 TTTTACAAAA
1 TTTTATAAAT
7304608 TTTTAT-AAT
1 TTTTATAAAT
*
7304617 TTTTATTAAAA
1 TTTTA-TAAAT
* *
7304628 TTTAAT-AAC
1 TTTTATAAAT
*
7304637 TTTTATAACT
1 TTTTATAAAT
7304647 TTT
1 TTT
7304650 ATTGATTTTT
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
9 21 0.39
10 27 0.50
11 6 0.11
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:7304600 original size:29 final size:30
Alignment explanation
Indices: 7304568--7304674 Score: 93
Period size: 29 Copynumber: 3.8 Consensus size: 30
7304558 TTTTTGATGC
* *
7304568 ATTTTATAATTTTTTATGATTTTTA-TAAA
1 ATTTTATAAATTTTTATAATTTTTATTAAA
* *
7304597 ATTTTACAAAATTTTATAATTTTTATTAAA
1 ATTTTATAAATTTTTATAATTTTTATTAAA
* * * *
7304627 ATTTAAT-AACTTTTATAACTTTTATT--G
1 ATTTTATAAATTTTTATAATTTTTATTAAA
7304654 ATTTT-T--ATTTTTATAATTTTT
1 ATTTTATAAATTTTTATAATTTTT
7304675 TTGTCACATA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
25 13 0.20
26 1 0.02
27 4 0.06
29 38 0.58
30 9 0.14
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.61
Consensus pattern (30 bp):
ATTTTATAAATTTTTATAATTTTTATTAAA
Found at i:7304622 original size:9 final size:9
Alignment explanation
Indices: 7304569--7304674 Score: 56
Period size: 9 Copynumber: 11.4 Consensus size: 9
7304559 TTTTGATGCA
7304569 TTTTATAATT
1 TTTTATAA-T
*
7304579 TTTTATGAT
1 TTTTATAAT
*
7304588 TTTTATAAAA
1 TTTTAT-AAT
* *
7304598 TTTTACAAAA
1 TTTTA-TAAT
7304608 TTTTATAAT
1 TTTTATAAT
*
7304617 TTTTATTAAAA
1 TTTTA-T-AAT
* *
7304628 TTTAATAAC
1 TTTTATAAT
*
7304637 TTTTATAAC
1 TTTTATAAT
*
7304646 TTTTATTGA-
1 TTTTA-TAAT
7304655 TTTT-T-AT
1 TTTTATAAT
7304662 TTTTATAAT
1 TTTTATAAT
7304671 TTTT
1 TTTT
7304675 TTGTCACATA
Statistics
Matches: 77, Mismatches: 11, Indels: 17
0.73 0.10 0.16
Matches are distributed among these distances:
6 1 0.01
7 5 0.06
8 1 0.01
9 39 0.51
10 25 0.32
11 6 0.08
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:7304627 original size:20 final size:20
Alignment explanation
Indices: 7304604--7304642 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7304594 AAAATTTTAC
* *
7304604 AAAATTTTATAATTTTTATT
1 AAAATTTAATAACTTTTATT
7304624 AAAATTTAATAACTTTTAT
1 AAAATTTAATAACTTTTAT
7304643 AACTTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (20 bp):
AAAATTTAATAACTTTTATT
Found at i:7305256 original size:15 final size:15
Alignment explanation
Indices: 7305236--7305267 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7305226 ATATATTATT
7305236 GGTAATCATTTTCAG
1 GGTAATCATTTTCAG
7305251 GGTAATCATTTTCAG
1 GGTAATCATTTTCAG
7305266 GG
1 GG
7305268 AAAATCCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (15 bp):
GGTAATCATTTTCAG
Found at i:7308402 original size:3 final size:3
Alignment explanation
Indices: 7308394--7308435 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
7308384 CACAAAGTTG
7308394 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
7308436 AACCACAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7308920 original size:28 final size:27
Alignment explanation
Indices: 7308888--7308951 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
7308878 AAAAAATAAT
7308888 TTTTGTA-AGATATTTATTGAATTTTTAG
1 TTTTGTATAGATATTTATT--ATTTTTAG
* * *
7308916 TTTTGGTATATATTTTTATTATTTTTTG
1 TTTT-GTATAGATATTTATTATTTTTAG
7308944 TTTTGTAT
1 TTTTGTAT
7308952 TTAAATTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 4 0.13
28 15 0.48
29 3 0.10
30 9 0.29
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (27 bp):
TTTTGTATAGATATTTATTATTTTTAG
Found at i:7311798 original size:12 final size:12
Alignment explanation
Indices: 7311781--7311807 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7311771 AATTCTCGTA
7311781 AATTATTAATAT
1 AATTATTAATAT
7311793 AATTATTAATAT
1 AATTATTAATAT
7311805 AAT
1 AAT
7311808 ATCATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AATTATTAATAT
Found at i:7316046 original size:2 final size:2
Alignment explanation
Indices: 7316039--7316071 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7316029 GGACATTTAG
7316039 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7316072 GTTAAATTCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7316804 original size:40 final size:40
Alignment explanation
Indices: 7316642--7316786 Score: 272
Period size: 40 Copynumber: 3.6 Consensus size: 40
7316632 ATATATATGT
7316642 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC
7316682 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC
7316722 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC
**
7316762 GAAGGCATTCGTGTTGGTTATTATA
1 GAAGGCATTCGTGCGGGTTATTATA
7316787 TCCGAGCCAA
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (40 bp):
GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCC
Found at i:7316804 original size:80 final size:80
Alignment explanation
Indices: 7316642--7316804 Score: 254
Period size: 80 Copynumber: 2.0 Consensus size: 80
7316632 ATATATATGT
7316642 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATA
1 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATA
* ** *
7316707 ACCGGGTTAAGTCCC
66 ACCGAGCCAAATCCC
**
7316722 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGTTGGTTATTATA
1 GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATA
* *
7316787 TCCGAGCCAAATTCC
66 ACCGAGCCAAATCCC
7316802 GAA
1 GAA
7316805 AGTATTTATG
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
GAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATA
ACCGAGCCAAATCCC
Found at i:7323325 original size:26 final size:26
Alignment explanation
Indices: 7323244--7323327 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
7323234 TGATACAAAT
7323244 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
7323270 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
7323296 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
7323322 TGATAA
1 TGATAA
7323328 GAATTACATG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:7330308 original size:18 final size:17
Alignment explanation
Indices: 7330285--7330318 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7330275 TTAATTTAAG
7330285 ACAAATATTATATAGAGT
1 ACAAATATTAT-TAGAGT
*
7330303 ACAAATGTTATTAGAG
1 ACAAATATTATTAGAG
7330319 GTATCTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (17 bp):
ACAAATATTATTAGAGT
Found at i:7333504 original size:25 final size:25
Alignment explanation
Indices: 7333476--7333526 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7333466 ATCACCCCCT
7333476 CCGCCCCCCCAAAAAAAAAAAACAA
1 CCGCCCCCCCAAAAAAAAAAAACAA
*
7333501 CCGCCCCCCCCAAAAAAAAAAACAA
1 CCGCCCCCCCAAAAAAAAAAAACAA
7333526 C
1 C
7333527 ACTCGCGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.53, C:0.43, G:0.04, T:0.00
Consensus pattern (25 bp):
CCGCCCCCCCAAAAAAAAAAAACAA
Found at i:7335344 original size:21 final size:21
Alignment explanation
Indices: 7335318--7335357 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7335308 ACAAGAGAAC
7335318 TTAAT-ATTTTCAAAACTAAAT
1 TTAATAATTTTC-AAACTAAAT
7335339 TTAATAATTTTCAAACTAA
1 TTAATAATTTTCAAACTAA
7335358 GATAATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAATAATTTTCAAACTAAAT
Found at i:7335635 original size:26 final size:28
Alignment explanation
Indices: 7335583--7335635 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
7335573 ATTCATTTGT
*
7335583 TATTATTAATTAGTTTTAAATATATATG
1 TATTATTAATTAGTTTTAAATACATATG
7335611 TATTA-TAATT-GTTTTTAAA-ACATAT
1 TATTATTAATTAG-TTTTAAATACATAT
7335636 CTATGTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 6 0.26
27 12 0.52
28 5 0.22
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (28 bp):
TATTATTAATTAGTTTTAAATACATATG
Found at i:7341657 original size:21 final size:20
Alignment explanation
Indices: 7341636--7341725 Score: 69
Period size: 20 Copynumber: 4.5 Consensus size: 20
7341626 TTAGCAATTA
7341636 AATAATTTTTTAAAAATTTT
1 AATAATTTTTTAAAAATTTT
* *
7341656 AAAAATATTTTT-ATAATTTT
1 AATAAT-TTTTTAAAAATTTT
* * *
7341676 TAT-ACTTTTTAAATAATGTT
1 AATAATTTTTTAAA-AATTTT
*
7341696 AATAATTTATTTAATAATTTTT
1 AATAATTT-TTTAA-AAATTTT
7341718 AA-AATTTT
1 AATAATTTT
7341726 AAAATTTTTC
Statistics
Matches: 53, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
18 5 0.09
19 2 0.04
20 21 0.40
21 13 0.25
22 11 0.21
23 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (20 bp):
AATAATTTTTTAAAAATTTT
Found at i:7342147 original size:31 final size:31
Alignment explanation
Indices: 7342112--7342175 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
7342102 AAACGGTTAC
7342112 TGAACTATACAAAAATTTTCATTTAAGTCAT
1 TGAACTATACAAAAATTTTCATTTAAGTCAT
*** * *
7342143 TGAACTATTTGAAAGTTTTTATTTAAGTCAT
1 TGAACTATACAAAAATTTTCATTTAAGTCAT
7342174 TG
1 TG
7342176 GGTTTTCGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (31 bp):
TGAACTATACAAAAATTTTCATTTAAGTCAT
Found at i:7349660 original size:20 final size:19
Alignment explanation
Indices: 7349637--7349701 Score: 53
Period size: 20 Copynumber: 3.4 Consensus size: 19
7349627 AAAAATAACA
7349637 AAAAAATATAATAATTACTT
1 AAAAAATATAATAATTA-TT
* *
7349657 AAAAATTTTCAGA-AATTATT
1 AAAAAATAT-A-ATAATTATT
*
7349677 AAAAAATAGAATAA-TATT
1 AAAAAATATAATAATTATT
*
7349695 ATAAAAT
1 AAAAAAT
7349702 TGCGAAAACA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
18 11 0.31
19 3 0.08
20 15 0.42
21 6 0.17
22 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (19 bp):
AAAAAATATAATAATTATT
Found at i:7350173 original size:9 final size:9
Alignment explanation
Indices: 7350134--7350174 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
7350124 ATAGGATTTA
*
7350134 TAAAATTTT
1 TAAATTTTT
*
7350143 TAAAATTTT
1 TAAATTTTT
7350152 T-AATTTTT
1 TAAATTTTT
7350160 T-AATTTTT
1 TAAATTTTT
7350168 TAAATTT
1 TAAATTT
7350175 AGTGAACCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 15 0.50
9 15 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
TAAATTTTT
Found at i:7350217 original size:17 final size:17
Alignment explanation
Indices: 7350137--7350219 Score: 52
Period size: 16 Copynumber: 5.0 Consensus size: 17
7350127 GGATTTATAA
7350137 AATTTTTAA-AATTTTT
1 AATTTTTAATAATTTTT
7350153 AATTTTT--TAATTTTTT
1 AATTTTTAATAA-TTTTT
* * *
7350169 AA-ATTTAGTGAACCTTTT
1 AATTTTTAAT-AA-TTTTT
*
7350187 -A-TTTTATATTATTTTT
1 AATTTTTA-ATAATTTTT
7350203 AATTTTTAATAATTTTT
1 AATTTTTAATAATTTTT
7350220 GGATTTTTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
15 5 0.10
16 18 0.35
17 16 0.31
18 12 0.24
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
AATTTTTAATAATTTTT
Found at i:7353030 original size:30 final size:30
Alignment explanation
Indices: 7352985--7353067 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
7352975 GAATAAGTTA
* *
7352985 CTCACACAATA-TGACAATATATCA-AGGTTG
1 CTCACACAA-ACTGACATTATATCATA-ATTG
* *
7353015 CTCACACAAGCTGACATTATAACATAATTG
1 CTCACACAAACTGACATTATATCATAATTG
*
7353045 CTCACATAAACTGACATTATATC
1 CTCACACAAACTGACATTATATC
7353068 GATATTACCC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
30 43 0.98
31 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.28
Consensus pattern (30 bp):
CTCACACAAACTGACATTATATCATAATTG
Found at i:7353588 original size:27 final size:26
Alignment explanation
Indices: 7353558--7353611 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
7353548 TGAATTATTT
*
7353558 AATTTAATCGGACTA-ATCAATCAAACC
1 AATTGAATC-GACTAGATCAA-CAAACC
*
7353585 AATTGAATCGATTAGATCAACAAACC
1 AATTGAATCGACTAGATCAACAAACC
7353611 A
1 A
7353612 GTAACCTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.46, C:0.20, G:0.09, T:0.24
Consensus pattern (26 bp):
AATTGAATCGACTAGATCAACAAACC
Found at i:7363601 original size:32 final size:32
Alignment explanation
Indices: 7363560--7363624 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
7363550 TAAGGGTGAT
7363560 TGTTTGAGATTCTCAGAGATCAACTAAACTTC
1 TGTTTGAGATTCTCAGAGATCAACTAAACTTC
7363592 TGTTTGAGATTCTCAGAGATCAACTAAACTTC
1 TGTTTGAGATTCTCAGAGATCAACTAAACTTC
7363624 T
1 T
7363625 CACTTTTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (32 bp):
TGTTTGAGATTCTCAGAGATCAACTAAACTTC
Found at i:7365994 original size:29 final size:29
Alignment explanation
Indices: 7365961--7366019 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7365951 GTTTCATGTG
7365961 AAACTAGACATAATAAGCTTCAATTTTAT
1 AAACTAGACATAATAAGCTTCAATTTTAT
7365990 AAACTAGACATAATAAGCTTCAATTTTAT
1 AAACTAGACATAATAAGCTTCAATTTTAT
7366019 A
1 A
7366020 TGTAGTTCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.34
Consensus pattern (29 bp):
AAACTAGACATAATAAGCTTCAATTTTAT
Found at i:7366911 original size:46 final size:46
Alignment explanation
Indices: 7366741--7366917 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
7366731 TGTAACCCGC
* *** *
7366741 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATATTTGCAT
* * * *
7366787 CCAAAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA----TATTTGCAT
* * * *
7366837 --TTTA-TGAGCTCGGACTCAACTCAACGAGTTCGGATATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATATTTGCAT
* *
7366880 CCATAAGTGAACTCGGACTTAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
7366918 GCTCAACCAT
Statistics
Matches: 103, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 7 0.07
45 2 0.02
46 62 0.60
47 27 0.26
48 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATATTTGCAT
Found at i:7368911 original size:46 final size:46
Alignment explanation
Indices: 7368861--7369036 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
7368851 TATTTGGGCA
7368861 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7368907 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7368952 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7369000 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7369037 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7369016 original size:93 final size:93
Alignment explanation
Indices: 7368857--7369029 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
7368847 TGGATATTTG
* *
7368857 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
7368922 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
7368950 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
7369015 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
7369030 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:7377143 original size:46 final size:44
Alignment explanation
Indices: 7377076--7377242 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 44
7377066 GCCCATAAGC
7377076 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAAAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCATCC-AAAGT
* * *
7377122 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATTTC--A-C
1 GAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTGCA-TCCAAAGT
* ** *
7377169 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGC-GTTGCATCCA-AAGT
*
7377215 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
7377243 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 11, Indels: 20
0.76 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 1 0.01
46 55 0.55
47 26 0.26
48 2 0.02
49 1 0.01
50 2 0.02
51 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCAAAGT
Found at i:7377190 original size:93 final size:93
Alignment explanation
Indices: 7377075--7377246 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
7377065 CGCCCATAAG
** *
7377075 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAAAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCAAAAGTGAACTCGGACTCAACTCA
7377140 ACGAGCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATTTCA
* * *
7377168 CGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCAAAAGTGAACTCGGACTCAACTCA
*
7377233 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
7377247 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCAAAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATTTCA
Found at i:7377262 original size:46 final size:45
Alignment explanation
Indices: 7377068--7377255 Score: 113
Period size: 46 Copynumber: 4.1 Consensus size: 45
7377058 TGTAACCCGC
* * * * *
7377068 CCAT-AAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCTCAA
*
7377114 CCA-AAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---A
* * * * *
7377161 -CATTTC-A-CGAACTCGGACTCAACTCAACGAGTTCGAACAT-TTGCAT
1 CCA--TCAAGTGAACTCGGACTCAACTCAACGAGCTCG--GATGCT-CAA
*
7377207 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
1 CCATCAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAA
7377251 CCATC
1 CCATC
7377256 CTAGTGACAT
Statistics
Matches: 111, Mismatches: 14, Indels: 35
0.69 0.09 0.22
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 5 0.05
46 61 0.55
47 28 0.25
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATCAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCAA
Found at i:7389331 original size:17 final size:17
Alignment explanation
Indices: 7389306--7389338 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7389296 AAGACAATTT
*
7389306 TTTTTTTGTTATTATTA
1 TTTTATTGTTATTATTA
7389323 TTTTATTGTTATTATT
1 TTTTATTGTTATTATT
7389339 TAGATATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (17 bp):
TTTTATTGTTATTATTA
Found at i:7389376 original size:17 final size:17
Alignment explanation
Indices: 7389301--7389376 Score: 52
Period size: 17 Copynumber: 4.5 Consensus size: 17
7389291 ATAAAAAGAC
7389301 AATTTT-TTTT-TTGTT
1 AATTTTATTTTATTGTT
7389316 -ATTATTATTTTATTGTT
1 AATT-TTATTTTATTGTT
* ** *
7389333 ATTATTTA-GATATTATAT
1 AAT-TTTATTTTATTGT-T
7389351 AATTTTTATTTTATTGTT
1 AA-TTTTATTTTATTGTT
7389369 AATTTTAT
1 AATTTTAT
7389377 CTAAGTATAA
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
14 3 0.07
15 2 0.04
16 4 0.09
17 16 0.36
18 13 0.29
19 7 0.16
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (17 bp):
AATTTTATTTTATTGTT
Found at i:7390220 original size:12 final size:12
Alignment explanation
Indices: 7390203--7390228 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7390193 ACAAGTTGTA
7390203 AAAGGAGATATG
1 AAAGGAGATATG
7390215 AAAGGAGATATG
1 AAAGGAGATATG
7390227 AA
1 AA
7390229 GCCACAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.15
Consensus pattern (12 bp):
AAAGGAGATATG
Found at i:7391381 original size:35 final size:33
Alignment explanation
Indices: 7391341--7391421 Score: 90
Period size: 35 Copynumber: 2.4 Consensus size: 33
7391331 ACTATTGTTG
7391341 TTATTATTATTATACCTGATTTTATTATTATCAA
1 TTATTATTATTATACCTGATTTTATTATTA-CAA
* * * * *
7391375 TATATTATTGTTATTCTTTATTTTATTATTACTA
1 T-TATTATTATTATACCTGATTTTATTATTACAA
*
7391409 TTATTACTATTAT
1 TTATTATTATTAT
7391422 TATTATTATG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
33 10 0.26
34 4 0.10
35 25 0.64
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (33 bp):
TTATTATTATTATACCTGATTTTATTATTACAA
Found at i:7391436 original size:18 final size:18
Alignment explanation
Indices: 7391398--7391445 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
7391388 TTCTTTATTT
* *
7391398 TATTATTACTATTATTAC
1 TATTATTATTATTATGAC
*
7391416 TATTATTATTATTATGGC
1 TATTATTATTATTATGAC
*
7391434 TATTATTTTTAT
1 TATTATTATTAT
7391446 GATTATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.60
Consensus pattern (18 bp):
TATTATTATTATTATGAC
Found at i:7391440 original size:3 final size:3
Alignment explanation
Indices: 7391245--7391430 Score: 121
Period size: 3 Copynumber: 62.7 Consensus size: 3
7391235 CACCATAACC
* *
7391245 ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATC ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * * * * *
7391293 GTT ATC ACT ATT ATC GTC ATT ACT ATT ATT TTT TTT A-T ACT ATT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
7391340 GTT ATT ATT ATT A-T ACCTG ATT -TT ATT ATT ATC AAT A-T ATT ATT
1 ATT ATT ATT ATT ATT A--TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
7391384 GTT ATT CTTT ATT -TT ATT ATT ACT ATT ATT ACT ATT ATT ATT ATT
1 ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7391429 AT
1 AT
7391431 GGCTATTATT
Statistics
Matches: 141, Mismatches: 34, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
2 10 0.07
3 128 0.91
4 2 0.01
5 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:7391694 original size:17 final size:15
Alignment explanation
Indices: 7391672--7391716 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 15
7391662 TCATTTATTG
7391672 ATTTATATTTCTTGCTT
1 ATTTATATTT-TTG-TT
7391689 ATTTATATTTTTGTT
1 ATTTATATTTTTGTT
7391704 ACTATTATATTTT
1 A-T-TTATATTTT
7391717 AAGATATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.12
16 4 0.15
17 19 0.73
ACGTcount: A:0.22, C:0.07, G:0.04, T:0.67
Consensus pattern (15 bp):
ATTTATATTTTTGTT
Found at i:7393755 original size:30 final size:30
Alignment explanation
Indices: 7393712--7393773 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
7393702 ATAAAGATAA
*
7393712 AAAAAAACCAAAAA-AAAACAATATTTACAAT
1 AAAAAAACCAAAAATAAAA-AATATATA-AAT
*
7393743 AAAAAAA-TAAAAATAAAAAATATATAAAT
1 AAAAAAACCAAAAATAAAAAATATATAAAT
7393772 AA
1 AA
7393774 TGACATGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.18
30 12 0.43
31 11 0.39
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (30 bp):
AAAAAAACCAAAAATAAAAAATATATAAAT
Found at i:7393771 original size:15 final size:15
Alignment explanation
Indices: 7393726--7393773 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
7393716 AAACCAAAAA
*
7393726 AAAACAATATTTACAAT
1 AAAA-AATATATA-AAT
*
7393743 AAAAAA-ATAAAAAT
1 AAAAAATATATAAAT
7393757 AAAAAATATATAAAT
1 AAAAAATATATAAAT
7393772 AA
1 AA
7393774 TGACATGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.33
15 12 0.44
16 2 0.07
17 4 0.15
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAAATATATAAAT
Found at i:7393998 original size:2 final size:2
Alignment explanation
Indices: 7393991--7394021 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7393981 TATGTACGTA
7393991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7394022 AATAGTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7394189 original size:25 final size:24
Alignment explanation
Indices: 7394132--7394183 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
7394122 ATATAAAAAA
7394132 ATAA-ATATTGAAAAATGTATGTAC
1 ATAACATATTGAAAAA-GTATGTAC
7394156 ATAACATATATGAAAAA-TATGTAC
1 ATAACATAT-TGAAAAAGTATGTAC
7394180 ATAA
1 ATAA
7394184 TGATATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 15 0.58
25 4 0.15
26 7 0.27
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.31
Consensus pattern (24 bp):
ATAACATATTGAAAAAGTATGTAC
Found at i:7394245 original size:21 final size:21
Alignment explanation
Indices: 7394195--7394246 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
7394185 GATATTAAAA
*
7394195 TAAAATAATAAGTGATAATAG
1 TAAAATAATAAGTGATAATAC
*
7394216 TGAAAATAATAGGT-ATAATAC
1 T-AAAATAATAAGTGATAATAC
7394237 TAAATATAAT
1 TAAA-ATAAT
7394247 GATGTATGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 3 0.11
21 13 0.48
22 11 0.41
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.31
Consensus pattern (21 bp):
TAAAATAATAAGTGATAATAC
Found at i:7394441 original size:29 final size:29
Alignment explanation
Indices: 7394381--7394444 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
7394371 ATACGGTATT
* * *
7394381 AAAAATATATATATATAATATAGTTATCA
1 AAAAATATATATACATAAGATAATTATCA
* *
7394410 AAAAATATATATACATGAGATAATATATAA
1 AAAAATATATATACATAAGATAAT-TATCA
7394440 AAAAA
1 AAAAA
7394445 ATAATAATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 20 0.69
30 9 0.31
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (29 bp):
AAAAATATATATACATAAGATAATTATCA
Found at i:7394491 original size:37 final size:37
Alignment explanation
Indices: 7394445--7394564 Score: 116
Period size: 37 Copynumber: 3.2 Consensus size: 37
7394435 TATAAAAAAA
* * ** *
7394445 ATAATAATATAGTATTCGAAATATGTACATAATATCT
1 ATAAAAATATAATATTAAAAATATATACATAATATCT
**
7394482 ATAAAAATATAATATTAAAAATATATACATAATATAA
1 ATAAAAATATAATATTAAAAATATATACATAATATCT
* * *
7394519 AGTTAAAA-ATAATATACAAAAATATACACATAATATCT
1 A-TAAAAATATAATAT-TAAAAATATATACATAATATCT
7394557 ATTAAAAA
1 A-TAAAAA
7394565 GAATATACAC
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
37 38 0.57
38 29 0.43
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (37 bp):
ATAAAAATATAATATTAAAAATATATACATAATATCT
Found at i:7394524 original size:25 final size:26
Alignment explanation
Indices: 7394487--7394536 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
7394477 TATCTATAAA
7394487 AATATAATATTAAAAAT-ATATACAT
1 AATATAATATTAAAAATAATATACAT
7394512 AATATAA-AGTTAAAAATAATATACA
1 AATATAATA-TTAAAAATAATATACA
7394537 AAAATATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (26 bp):
AATATAATATTAAAAATAATATACAT
Found at i:7394571 original size:37 final size:37
Alignment explanation
Indices: 7394471--7394582 Score: 136
Period size: 37 Copynumber: 3.0 Consensus size: 37
7394461 CGAAATATGT
* * *
7394471 ACATAATATCTATAAAAATATAATAT-TAAAAATATAT
1 ACATAATATCTATTAAAA-ATAATATACAAAAATATAC
**
7394508 ACATAATATAAAGTTAAAAATAATATACAAAAATATAC
1 ACATAATATCTA-TTAAAAATAATATACAAAAATATAC
*
7394546 ACATAATATCTATTAAAAAGAATATACACAAAATATA
1 ACATAATATCTATTAAAAATAATATACA-AAAATATA
7394583 TATGCATGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
37 32 0.50
38 32 0.50
ACGTcount: A:0.61, C:0.08, G:0.02, T:0.29
Consensus pattern (37 bp):
ACATAATATCTATTAAAAATAATATACAAAAATATAC
Found at i:7394653 original size:2 final size:2
Alignment explanation
Indices: 7394646--7394672 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7394636 TACATAAAAG
7394646 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7394673 GCATGTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7396707 original size:2 final size:2
Alignment explanation
Indices: 7396700--7396730 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7396690 ATTCATAATT
7396700 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7396731 GAGGAAACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.