Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 270 of 427
Found at i:77840311 original size:15 final size:15
Alignment explanation
Indices: 77840291--77840323 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
77840281 AATCCTTTAA
77840291 AAATTA-TAAAAATAT
1 AAATTATTAAAAAT-T
77840306 AAATTATTAAAAATT
1 AAATTATTAAAAATT
77840321 AAA
1 AAA
77840324 ATTCAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTATTAAAAATT
Found at i:77845127 original size:25 final size:25
Alignment explanation
Indices: 77845099--77845148 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
77845089 GAAATATTTT
*
77845099 AATATTTATATTAATATTAAATAAA
1 AATAATTATATTAATATTAAATAAA
77845124 AATAATTATATTAATATTAAATAAA
1 AATAATTATATTAATATTAAATAAA
77845149 GTAAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
AATAATTATATTAATATTAAATAAA
Found at i:77845692 original size:29 final size:29
Alignment explanation
Indices: 77845659--77845718 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
77845649 TTTATGGATT
77845659 TATTCACTTGTGATGTTCATAATGTGGCA
1 TATTCACTTGTGATGTTCATAATGTGGCA
77845688 TATTCACTTGTGATGTTCATAATGTGGCA
1 TATTCACTTGTGATGTTCATAATGTGGCA
77845717 TA
1 TA
77845719 CATAAATCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (29 bp):
TATTCACTTGTGATGTTCATAATGTGGCA
Found at i:77846469 original size:58 final size:57
Alignment explanation
Indices: 77846349--77846466 Score: 148
Period size: 57 Copynumber: 2.1 Consensus size: 57
77846339 AAAGAAGGTG
* * *
77846349 AAATGGAGAAATAAGAAACATTTGGAAATGATTAAGGTTTTATCCAAAATGAAAACGA
1 AAATGGAGAAAT-AGAAACATTTGGAAATAAATAAGATTTTATCCAAAATGAAAACGA
** * *
77846407 AAATGGAGAAAT-GAAATCATTTGGAAATAAATGTGATTTTCTCCAAAATGAAAATGA
1 AAATGGAGAAATAGAAA-CATTTGGAAATAAATAAGATTTTATCCAAAATGAAAACGA
77846464 AAA
1 AAA
77846467 ATGAAATTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 4 0.08
57 36 0.69
58 12 0.23
ACGTcount: A:0.50, C:0.07, G:0.18, T:0.25
Consensus pattern (57 bp):
AAATGGAGAAATAGAAACATTTGGAAATAAATAAGATTTTATCCAAAATGAAAACGA
Found at i:77847356 original size:10 final size:10
Alignment explanation
Indices: 77847343--77847369 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
77847333 CTCCCCCATC
77847343 CCTCCCCTCT
1 CCTCCCCTCT
77847353 CCTCCCCTCT
1 CCTCCCCTCT
77847363 CCTCCCC
1 CCTCCCC
77847370 CTACCCCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.74, G:0.00, T:0.26
Consensus pattern (10 bp):
CCTCCCCTCT
Found at i:77847386 original size:37 final size:36
Alignment explanation
Indices: 77847330--77847404 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 36
77847320 ATTTTTCCAA
*
77847330 CCCCTCCCCCATCCCTCCCCTCTCCTCCCCTCTCCTC
1 CCCCTCCCCCATCCATCCCCTCTCCTCCCCTCT-CTC
* *
77847367 CCCCTACCCCCAT-CATCCCCTTTCCTTCCCTCTCTC
1 CCCCT-CCCCCATCCATCCCCTCTCCTCCCCTCTCTC
77847403 CC
1 CC
77847405 TCATTTTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 5 0.15
37 22 0.65
38 7 0.21
ACGTcount: A:0.05, C:0.68, G:0.00, T:0.27
Consensus pattern (36 bp):
CCCCTCCCCCATCCATCCCCTCTCCTCCCCTCTCTC
Found at i:77848590 original size:20 final size:21
Alignment explanation
Indices: 77848565--77848615 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
77848555 AGAAAGTTAC
* *
77848565 AAATATATA-TTTTCTTTTTT
1 AAATATATAGCTTTCCTTTTT
77848585 AAATATATAAGCTTTCCTTTTT
1 AAATATAT-AGCTTTCCTTTTT
77848607 AAATATATA
1 AAATATATA
77848616 ATATGACCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 8 0.30
21 2 0.07
22 17 0.63
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (21 bp):
AAATATATAGCTTTCCTTTTT
Found at i:77848600 original size:22 final size:22
Alignment explanation
Indices: 77848575--77848616 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
77848565 AAATATATAT
*
77848575 TTTCTTTTTTAAATATATAAGC
1 TTTCCTTTTTAAATATATAAGC
77848597 TTTCCTTTTTAAATATATAA
1 TTTCCTTTTTAAATATATAA
77848617 TATGACCACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTCCTTTTTAAATATATAAGC
Found at i:77849569 original size:4 final size:4
Alignment explanation
Indices: 77849560--77849585 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
77849550 ATAGTAAACT
77849560 TAAC TAAC TAAC TAAC TAAC TAAC TA
1 TAAC TAAC TAAC TAAC TAAC TAAC TA
77849586 CTTAACCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAC
Found at i:77850572 original size:21 final size:21
Alignment explanation
Indices: 77850548--77850588 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
77850538 TTATGTTTAA
*
77850548 TAGATATGTGTAAAAAAATTT
1 TAGATATGTCTAAAAAAATTT
* *
77850569 TAGATTTTTCTAAAAAAATT
1 TAGATATGTCTAAAAAAATT
77850589 ACTATTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (21 bp):
TAGATATGTCTAAAAAAATTT
Found at i:77850615 original size:18 final size:18
Alignment explanation
Indices: 77850561--77850615 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
77850551 ATATGTGTAA
* *
77850561 AAAAATTTTAGATTTTTCT
1 AAAAATTTTA-CTTTTTTT
** *
77850580 AAAAAAATTACTATTTTT
1 AAAAATTTTACTTTTTTT
77850598 AAAAATTTTACTTTTTTT
1 AAAAATTTTACTTTTTTT
77850616 TTATCTTATA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
18 20 0.71
19 8 0.29
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (18 bp):
AAAAATTTTACTTTTTTT
Found at i:77850661 original size:18 final size:18
Alignment explanation
Indices: 77850622--77850663 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
77850612 TTTTTTATCT
* **
77850622 TATATTTAAAAAGGAATG
1 TATATTAAAAAAGGAAAA
77850640 TATATTAAAAAAGGAAAA
1 TATATTAAAAAAGGAAAA
77850658 TATATT
1 TATATT
77850664 TTTATTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (18 bp):
TATATTAAAAAAGGAAAA
Found at i:77852442 original size:2 final size:2
Alignment explanation
Indices: 77852435--77852464 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
77852425 ATTAACCAAA
77852435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77852465 TTATTTTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77852504 original size:9 final size:9
Alignment explanation
Indices: 77852490--77852514 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77852480 ATAAGTATAA
77852490 AAATTAACC
1 AAATTAACC
77852499 AAATTAACC
1 AAATTAACC
77852508 AAATTAA
1 AAATTAA
77852515 AGTATTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATTAACC
Found at i:77856929 original size:14 final size:14
Alignment explanation
Indices: 77856906--77856944 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
77856896 TGTTACTATG
*
77856906 TTTTAGTTTTAGAC
1 TTTTACTTTTAGAC
*
77856920 TTTTACTTTTAGAT
1 TTTTACTTTTAGAC
*
77856934 TTTTATTTTTA
1 TTTTACTTTTA
77856945 TTTATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.05, G:0.08, T:0.67
Consensus pattern (14 bp):
TTTTACTTTTAGAC
Found at i:77856996 original size:18 final size:18
Alignment explanation
Indices: 77856973--77857010 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
77856963 ATTTTTATGA
*
77856973 TTGGGTTGGTTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
77856991 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
77857009 TT
1 TT
77857011 TGTAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.03, G:0.45, T:0.45
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:77858307 original size:30 final size:30
Alignment explanation
Indices: 77858249--77858307 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
77858239 TTTACGAGCC
* *
77858249 TAGGGGCCAAAATGCAAATATGTGAAAGTT
1 TAGGGGCCAAAATACAAATATGTAAAAGTT
* * *
77858279 TAGGGGTCAAAATATAAATTTGTAAAAGT
1 TAGGGGCCAAAATACAAATATGTAAAAGT
77858308 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27
Consensus pattern (30 bp):
TAGGGGCCAAAATACAAATATGTAAAAGTT
Found at i:77859004 original size:50 final size:50
Alignment explanation
Indices: 77858923--77859306 Score: 333
Period size: 50 Copynumber: 7.6 Consensus size: 50
77858913 TTCGTTGTGA
* *
77858923 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * ** * * *
77858973 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* ** * * * * *
77859024 ATCACATGTGTAGTACTAAGTATAGGATACTACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
*
77859074 GTCACGTGTGTAGTACTAAGTGC-GGACTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGG-CTACTACGTGTACCAGATTGATAG
* ** * * * * * *
77859124 TTCGTATGTGTAGTACTAAGTACAGGCTACTATGCGTACCTG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * * * * * *
77859175 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTATCAAATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * *
77859225 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCATATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
**
77859275 GTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
77859307 TGCATACCAG
Statistics
Matches: 255, Mismatches: 71, Indels: 16
0.75 0.21 0.05
Matches are distributed among these distances:
49 8 0.03
50 177 0.69
51 68 0.27
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:77859104 original size:101 final size:101
Alignment explanation
Indices: 77858924--77859105 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 101
77858914 TCGTTGTGAG
* * * * * *
77858924 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGATACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
77858989 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
* * * * *
77859025 TCACATGTGTAGTACTAAGTATAGGATACTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTACAGGATACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
77859090 TAAGTGC-GGACTACTA
66 TAAGTGCAGG-CTACTA
77859106 CGTGTACCAG
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
100 2 0.03
101 67 0.97
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTACAGGATACTACATGTACCAGATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGTTAACTTCGA
Found at i:77859206 original size:151 final size:150
Alignment explanation
Indices: 77858922--77859314 Score: 642
Period size: 151 Copynumber: 2.6 Consensus size: 150
77858912 ATTCGTTGTG
* *
77858922 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGC-GGCTACTACGTGTACCAGATTGATAGGTCGTATGTGTAGT
77858987 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTATAGGAT
65 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTATAGGAT
* *
77859052 ACTACGTGTATCAGATGGTTA
130 ACTACATGTATCAAATGGTTA
*
77859073 AGTCACGTGTGTAGTACTAAGTGCGGACTACTACGTGTACCAGATTGATAGTTCGTATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCGG-CTACTACGTGTACCAGATTGATAGGTCGTATGTGTAGT
* * * * * *
77859138 ACTAAGTACAGGCTACTATGCGTACCTGTTAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCT
65 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTATAGGAT
77859203 ACTACATGTATCAAATGGTTA
130 ACTACATGTATCAAATGGTTA
* *
77859224 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCATATTGATAGGTCGTATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTG-CGGCTACTACGTGTACCAGATTGATAGGTCGTATGTGTAGT
77859289 ACTAAGTGCAGGCTACTATGCATACC
65 ACTAAGTGCAGGCTACTATGCATACC
77859315 AGAGAGCTTC
Statistics
Matches: 224, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
150 2 0.01
151 220 0.98
152 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (150 bp):
AGTCACGTGTGTAGTACTAAGTGCGGCTACTACGTGTACCAGATTGATAGGTCGTATGTGTAGTA
CTAAGTGCAGGCTACTATGCATACCCGTTAACTTCGATCACATGTGTAGTACTAAGTATAGGATA
CTACATGTATCAAATGGTTA
Found at i:77862456 original size:20 final size:20
Alignment explanation
Indices: 77862431--77862502 Score: 126
Period size: 20 Copynumber: 3.6 Consensus size: 20
77862421 GAGGCAAAGC
77862431 ACACGCCCGTGTGCTTGGGG
1 ACACGCCCGTGTGCTTGGGG
77862451 ACACGCCCGTGTGCTTGGGG
1 ACACGCCCGTGTGCTTGGGG
*
77862471 ACACGCCTGTGTGCTTGGGG
1 ACACGCCCGTGTGCTTGGGG
*
77862491 ACACACCCGTGT
1 ACACGCCCGTGT
77862503 CCCTCACCCG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.12, C:0.31, G:0.36, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTGGGG
Found at i:77862607 original size:28 final size:29
Alignment explanation
Indices: 77862560--77862614 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
77862550 ACAGGGGTTT
77862560 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGTCCC
* *
77862589 TCACACTGCCTAG-ACACGCCCGTGTC
1 TCACACGGCCAAGCACACGCCCGTGTC
77862615 GTCGCTCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.15
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCGTGTCCC
Found at i:77866585 original size:27 final size:27
Alignment explanation
Indices: 77866555--77866609 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
77866545 ATACATGTCT
77866555 ACACTTTCATGCAACATTCAGCAAATC
1 ACACTTTCATGCAACATTCAGCAAATC
77866582 ACACTTTCATGCAACATTCAGCAAATC
1 ACACTTTCATGCAACATTCAGCAAATC
77866609 A
1 A
77866610 ACCTTACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.29, G:0.07, T:0.25
Consensus pattern (27 bp):
ACACTTTCATGCAACATTCAGCAAATC
Found at i:77870237 original size:42 final size:43
Alignment explanation
Indices: 77870175--77870297 Score: 148
Period size: 42 Copynumber: 2.9 Consensus size: 43
77870165 CGATATGTGT
77870175 TTTCGTGTAAGACCAC-GTCTGGGACGTTGGCATCGTATTTGA
1 TTTCGTGTAAGACCACTGTCTGGGACGTTGGCATCGTATTTGA
*
77870217 TTTCGTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGA
1 TTTCGTGTAAGACCACTGTCTGGGA-CGTTGGCATCG-TATTTGA
* * *
77870260 TTACATGTAAGACCACAT-T-TGGGACGTTGGCATTGTAT
1 TTTCGTGTAAGACCAC-TGTCTGGGACGTTGGCATCGTAT
77870298 GAGCTTTTCG
Statistics
Matches: 70, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
41 1 0.01
42 34 0.49
43 32 0.46
44 2 0.03
45 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (43 bp):
TTTCGTGTAAGACCACTGTCTGGGACGTTGGCATCGTATTTGA
Found at i:77870271 original size:43 final size:42
Alignment explanation
Indices: 77870180--77870297 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
77870170 TGTGTTTTCG
* * *
77870180 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGAAGTTGGCATCGTATTTGATTACA
77870222 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-AGTTGGCATCG-TATTTGATTACA
* * * *
77870265 TGTAAGACCACATTTGGGACGTTGGCATTGTAT
1 TGTAAGACCACGTCTGGGAAGTTGGCATCGTAT
77870298 GAGCTTTTCG
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.02
42 29 0.45
43 33 0.52
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGAAGTTGGCATCGTATTTGATTACA
Found at i:77878892 original size:20 final size:20
Alignment explanation
Indices: 77878867--77878906 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
77878857 GTTAGAGCTT
77878867 GCACTTCTTGAGAAACATAG
1 GCACTTCTTGAGAAACATAG
77878887 GCACTTCTTGAGAAACATAG
1 GCACTTCTTGAGAAACATAG
77878907 TTTTCTGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (20 bp):
GCACTTCTTGAGAAACATAG
Found at i:77882632 original size:94 final size:92
Alignment explanation
Indices: 77882504--77882683 Score: 261
Period size: 94 Copynumber: 1.9 Consensus size: 92
77882494 AAATTAAGTC
* ** *
77882504 TCTCTTTTTTTTTTTCACTCAATTGAGCAATTGAACTTTCAAAATGTATCAAAAGGACCCTCAAA
1 TCTCTTTTTTTTTTTCACTCAATTGAGCAATTGAACTTTCAAAATGCATCAAAAAAACACTCAAA
77882569 ATTCTTCAAAAAAAGCAATTAAGCCCTT
66 ATTCTTC-AAAAAAGCAATTAAGCCCTT
* * *
77882597 TCTCTTTTTTTTTTTCCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAAACACTCAA
1 TCTCTTTTTTTTTTT-CACTCAATTGAGCAATTGAACTTTCAAAATGCATCAAAAAAACACTCAA
* *
77882662 AATTTTTCATAAAAGCAATTAA
65 AATTCTTCAAAAAAGCAATTAA
77882684 ACCCCTGCTC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 28 0.36
94 49 0.64
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (92 bp):
TCTCTTTTTTTTTTTCACTCAATTGAGCAATTGAACTTTCAAAATGCATCAAAAAAACACTCAAA
ATTCTTCAAAAAAGCAATTAAGCCCTT
Found at i:77882716 original size:17 final size:17
Alignment explanation
Indices: 77882696--77882755 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
77882686 CCCTGCTCTT
77882696 ATTAAAAATTTAAAAAA
1 ATTAAAAATTTAAAAAA
*
77882713 ATTAAAAA-TTAAAAATT
1 ATTAAAAATTTAAAAA-A
*
77882730 ATT-AAATTTTAATAAAA
1 ATTAAAAATTTAA-AAAA
77882747 ATATAAAAA
1 AT-TAAAAA
77882756 AATATAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 10 0.29
17 17 0.50
18 4 0.12
19 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATTAAAAATTTAAAAAA
Found at i:77882786 original size:28 final size:28
Alignment explanation
Indices: 77882715--77882787 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
77882705 TTAAAAAAAT
*
77882715 TAAAAAT-TAAAAATTATTAAATTTTAA
1 TAAAAATATAAAAAATATTAAATTTTAA
* *
77882742 TAAAAATATAAAAAA-ATATAATTTTTTA
1 TAAAAATATAAAAAATAT-TAAATTTTAA
77882770 TAAAAATAGTAAAAAATA
1 TAAAAATA-TAAAAAATA
77882788 AAAAATTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 9 0.23
28 22 0.56
29 7 0.18
30 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (28 bp):
TAAAAATATAAAAAATATTAAATTTTAA
Found at i:77883044 original size:10 final size:10
Alignment explanation
Indices: 77883031--77883093 Score: 51
Period size: 10 Copynumber: 6.3 Consensus size: 10
77883021 TTTATAAAAA
77883031 TTTTATAATT
1 TTTTATAATT
77883041 TTTTAT-A-T
1 TTTTATAATT
* *
77883049 TTCTAT-ATA
1 TTTTATAATT
77883058 TTTTATAATTT
1 TTTTATAA-TT
77883069 TTTACTATAATT
1 TTT--TATAATT
*
77883081 TTTTCTAATT
1 TTTTATAATT
77883091 TTT
1 TTT
77883094 AATTTTTGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
8 7 0.16
9 6 0.14
10 16 0.37
11 4 0.09
12 5 0.12
13 5 0.12
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTATAATT
Found at i:77883050 original size:27 final size:27
Alignment explanation
Indices: 77883020--77883072 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
77883010 TTTCTTAAGA
77883020 ATTTATAAAAATTTTATAATTTTTTAT
1 ATTTATAAAAATTTTATAATTTTTTAT
* * *
77883047 ATTTCTATATATTTTATAATTTTTTA
1 ATTTATAAAAATTTTATAATTTTTTA
77883073 CTATAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTATAAAAATTTTATAATTTTTTAT
Found at i:77883077 original size:22 final size:23
Alignment explanation
Indices: 77883051--77883093 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
77883041 TTTTATATTT
77883051 CTAT-ATATTTTATAATTTTTTA
1 CTATAATATTTTATAATTTTTTA
* *
77883073 CTATAATTTTTTCTAATTTTT
1 CTATAATATTTTATAATTTTT
77883094 AATTTTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
CTATAATATTTTATAATTTTTTA
Found at i:77887071 original size:19 final size:20
Alignment explanation
Indices: 77887047--77887090 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
77887037 GTTAAACTGT
77887047 TTTCTTTTA-TATTTATTTA
1 TTTCTTTTATTATTTATTTA
*
77887066 TTTC-TTTATTATTTCTTTA
1 TTTCTTTTATTATTTATTTA
77887085 -TTCTTT
1 TTTCTTT
77887091 CTCTTGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTCTTTTATTATTTATTTA
Found at i:77887079 original size:11 final size:11
Alignment explanation
Indices: 77887058--77887092 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
77887048 TTCTTTTATA
77887058 TTTATTTATTTC
1 TTTA-TTATTTC
77887070 TTTATTATTTC
1 TTTATTATTTC
*
77887081 TTTATTCTTTC
1 TTTATTATTTC
77887092 T
1 T
77887093 CTTGTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTATTATTTC
Found at i:77887348 original size:63 final size:62
Alignment explanation
Indices: 77887213--77887366 Score: 168
Period size: 62 Copynumber: 2.5 Consensus size: 62
77887203 TTATTTTATT
* * ** *
77887213 TATTTATTTATTTCTTTATTCTTTTACTTTTAAAATACTTAAATTTAATATTATTTTTTTGCC
1 TATTCATTTATTT-TTTATTCTTTTATTTTTAAAATACTTAAATTTAATATTATTTACTTCCC
* * * * *
77887276 TATTTATTTATTTATTATTCTTTTATTTTTTAAATATTTAAATTTGATATTACTTATACTTCCC
1 TATTCATTTATTTTTTATTCTTTTATTTTTAAAATACTTAAATTTAATATTA-TT-TACTTCCC
77887340 T-TTCATTTAATTTTTTATT-TTTTATTT
1 TATTCATTT-ATTTTTTATTCTTTTATTT
77887367 CAAAGTTACT
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
62 34 0.44
63 29 0.37
64 15 0.19
ACGTcount: A:0.26, C:0.08, G:0.01, T:0.64
Consensus pattern (62 bp):
TATTCATTTATTTTTTATTCTTTTATTTTTAAAATACTTAAATTTAATATTATTTACTTCCC
Found at i:77891811 original size:40 final size:40
Alignment explanation
Indices: 77891767--77891951 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
77891757 TAACCACAAG
* * * * *
77891767 CACAATTGCCTTCGGGTCTTAACCCAGTTATATCAACTCG
1 CACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTCA
* *
77891807 CACAAATGCCTTCGGGTCTTATCCCGGATATAACAACTCA
1 CACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTCA
77891847 CACAAATGCCTTCGGGTCTTAGCCC-GAATATAACAACTCA
1 CACAAATGCCTTCGGGTCTTAGCCCAG-ATATAACAACTCA
77891887 CACAAATGCCTTCGGGTCTTAGCCCAGATATAATC-ACT-A
1 CACAAATGCCTTCGGGTCTTAGCCCAGATATAA-CAACTCA
* * *
77891926 GCATAAATGCCTTTGGGACTTAGCCC
1 -CACAAATGCCTTCGGGTCTTAGCCC
77891952 GGGTATCATT
Statistics
Matches: 131, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.02
40 127 0.97
41 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (40 bp):
CACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTCA
Found at i:77891884 original size:80 final size:80
Alignment explanation
Indices: 77891746--77891952 Score: 251
Period size: 80 Copynumber: 2.6 Consensus size: 80
77891736 TCTTCGGAAT
* * * * * *
77891746 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCC-AGTTATATCAACTCGCA
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCGAGATATAACAACTCACA
77891809 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
*
77891825 TTATCCCGGATATAACAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGA-ATATAACAACTCAC
1 TTAGCCCGGATATAAC-ACT-AGCACAAATGCCTTCGGGTCTTAGCCCGAGATATAACAACTCAC
77891888 ACAAATGCCTTCGGGTC
64 ACAAATGCCTTCGGGTC
* * * *
77891905 TTAGCCCAGATATAATCACTAGCATAAATGCCTTTGGGACTTAGCCCG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGCCCG
77891953 GGTATCATTC
Statistics
Matches: 110, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
79 5 0.05
80 102 0.93
81 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGCCCGAGATATAACAACTCACAC
AAATGCCTTCGGGTC
Found at i:77894701 original size:18 final size:18
Alignment explanation
Indices: 77894678--77894735 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
77894668 TTTGTTTATT
77894678 GTTATTCAATAACAATCA
1 GTTATTCAATAACAATCA
* * * *
77894696 GTTATTTAGTATCAAAC-
1 GTTATTCAATAACAATCA
77894713 G--A-TCAATAACAATCA
1 GTTATTCAATAACAATCA
77894728 GTTATTCA
1 GTTATTCA
77894736 GTCCAGTAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
14 8 0.29
15 2 0.07
17 2 0.07
18 16 0.57
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (18 bp):
GTTATTCAATAACAATCA
Found at i:77895364 original size:21 final size:24
Alignment explanation
Indices: 77895340--77895392 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 24
77895330 TAGCTATAGA
*
77895340 AATTAAA-A-TAATTAT-ACCATT
1 AATTAAACACTAATTATAACAATT
*
77895361 AATTACAACACTCATTATAACAATT
1 AATTA-AACACTAATTATAACAATT
77895386 AATTAAA
1 AATTAAA
77895393 TTTCTCTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 2 0.08
23 1 0.04
24 8 0.31
25 10 0.38
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTAAACACTAATTATAACAATT
Found at i:77896064 original size:5 final size:5
Alignment explanation
Indices: 77896056--77896095 Score: 62
Period size: 5 Copynumber: 7.6 Consensus size: 5
77896046 TTATTTTATA
77896056 ATAAT ATAAT ATAAT ATAAT ATAAT ATAATTT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA--T ATAAT ATA
77896096 CTTTTTATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 28 0.85
7 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:77896126 original size:16 final size:16
Alignment explanation
Indices: 77896107--77896147 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
77896097 TTTTTATCTA
*
77896107 ATTAATATAATATTTT
1 ATTAATATAATAATTT
77896123 ATTAATATAATAATTT
1 ATTAATATAATAATTT
77896139 ATT-ATATAA
1 ATTAATATAA
77896148 AATATCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.25
16 18 0.75
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTAATATAATAATTT
Found at i:77896204 original size:211 final size:214
Alignment explanation
Indices: 77895897--77896292 Score: 482
Period size: 211 Copynumber: 1.9 Consensus size: 214
77895887 TATTTACTTT
*
77895897 ATATTATATTATATTTAATTAATAATTAATAATTATAAAATATCTTTATACTTAAATTATAAGTA
1 ATATAATATTATATTTAATTAATAATTAATAATTATAAAATATCTTTATACTTAAATTATAAGTA
* ** * * * * * * * *
77895962 AATTATGTATTTAAATTACAATTGTACAAATATGATTTTTTACACATGTACATTTTTATTACCAT
66 AAATATACAATTAAATTACAAGTATACAAATA-CATATATTACACATGTACAATTTTATCACCAT
* *
77896027 ACATTTGT-TACAATTCAATTTATTTTATAATAAT-ATAATATAATATAATATAATATAATTTAT
130 ACATTTGTCTACAATTCAATTTATTTAATAATAATAACAATATAAT-TAATATAATATAATTTAT
77896090 AATATACTTTTTATCTAATTA
194 AATATACTTTTTATCTAATTA
* * *
77896111 ATATAATATTTTA-TTAATATAATAATTTATTA-TATAAAATATCTTT-TACTTAAAATT-TAAG
1 ATATAATATTATATTTAAT-TAATAATTAATAATTATAAAATATCTTTATACTT-AAATTATAAG
* **
77896172 -AAAATATACAATTATATTACAAGTATACAAATACATATATTACACATGTACAATTTTATCATTA
64 TAAAATATACAATTAAATTACAAGTATACAAATACATATATTACACATGTACAATTTTATCACCA
** * * *
77896236 TACATTTGTCTTTATTTTAATTTATTTAATAATAATAACAATATAATTAATCTAATA
129 TACATTTGTCTACAATTCAATTTATTTAATAATAATAACAATATAATTAATATAATA
77896293 AATATCATGT
Statistics
Matches: 153, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
210 33 0.22
211 56 0.37
212 18 0.12
213 24 0.16
214 22 0.14
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (214 bp):
ATATAATATTATATTTAATTAATAATTAATAATTATAAAATATCTTTATACTTAAATTATAAGTA
AAATATACAATTAAATTACAAGTATACAAATACATATATTACACATGTACAATTTTATCACCATA
CATTTGTCTACAATTCAATTTATTTAATAATAATAACAATATAATTAATATAATATAATTTATAA
TATACTTTTTATCTAATTA
Found at i:77897093 original size:19 final size:19
Alignment explanation
Indices: 77897069--77897113 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
77897059 AATGCTTCTT
77897069 TTTGCATT-CATTCCATGCA
1 TTTGCATTACATTCCAT-CA
*
77897088 TTTGCATTACATTGCATCA
1 TTTGCATTACATTCCATCA
*
77897107 TATGCAT
1 TTTGCAT
77897114 CAAATTTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (19 bp):
TTTGCATTACATTCCATCA
Found at i:77917315 original size:40 final size:40
Alignment explanation
Indices: 77917110--77917317 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
77917100 CAATTGAATG
* * ** * **
77917110 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTT
* * **
77917150 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTGGTT
* *
77917190 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTT
* * * * *
77917230 AAATCCGGGCTAATACCTGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTT
* * *
77917270 CTATCCGGGCTAAGACCCGAAGGCATTCGTTCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTT
77917310 ATATCCGG
1 ATATCCGG
77917318 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 4 0.03
40 132 0.94
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTT
Found at i:77918901 original size:44 final size:44
Alignment explanation
Indices: 77918846--77919472 Score: 372
Period size: 44 Copynumber: 13.9 Consensus size: 44
77918836 AGTCGTGGCG
* * * *
77918846 AATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTAAAGCCACA
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * *
77918890 AATCTTATCTTCTTGAATTTGCAGTGGAGTAGATCGAAGATAGCA
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * * * *
77918935 AATCTTATC-TCTCTAAAGTCGCAGTAGAGCAGATTAAAGCTATA
1 AATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * *
77918979 AACCTTATC-TCTCTGAAGTTACAGTAGAGCATG-TTGAAGTTACA
1 AATCTTATCTTC-CTGAAGTTGCAGTGGAGCA-GATTGAAGCTACA
* * ** *
77919023 AATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCG
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * *
77919068 AATCTTAT-TTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTACAAATTACA
1 AATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAG---C----TACA
* *
77919119 AATCTTATC-TCCTTGAAGTTACAGTGGAGCAGATTGAAGTTACA
1 AATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTGAAGCTACA
** * * * * * *
77919163 GGTCTTAT-TGCCCTGAAGTTGTAGTAGAGTAGATCGAAGATAGCA
1 AATCTTATCT-TCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * * *
77919208 AATCTTATC-TCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTAAA
1 AATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * *
77919252 AACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCG
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * * * *
77919297 AATCCTAT-TTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTACA
1 AATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
** * * *
77919341 AATTACAGATCCTATCTCTTGAAGTTGTAGTGGAGTAGATTGAAGTTACA
1 AA-T-CTTAT-CT-TC-C-TGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * ** *
77919391 AATCTTATC-TCTCTGAAGTTGCAATAGAGTAGATCGAAATTAAA
1 AATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * *
77919435 AATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAA
1 AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAA
77919473 ATTACAATTC
Statistics
Matches: 444, Mismatches: 107, Indels: 64
0.72 0.17 0.10
Matches are distributed among these distances:
43 1 0.00
44 232 0.52
45 137 0.31
46 3 0.01
47 1 0.00
48 5 0.01
49 3 0.01
50 28 0.06
51 32 0.07
52 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
Found at i:77918986 original size:89 final size:88
Alignment explanation
Indices: 77918846--77919503 Score: 339
Period size: 89 Copynumber: 7.3 Consensus size: 88
77918836 AGTCGTGGCG
* * * * * * * * *
77918846 AATCTTATCT-TCCTGAAGTTGTAGTGGAGTAGATTAAAGCCACAAATCTTATCTTCTTGAATTT
1 AATCTTATCTCT-CTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTTCCTGAAGTT
77918910 GCAGTGGAGTAGATCGAAGATAGCA
65 GCAGTGGAGTAGATCGAAGATA-CA
*
77918935 AATCTTATCTCTCTAAAGTCGCAGTAGAGCAGATTAAAGCTATAAACCTTATC-TCTCTGAAGTT
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTTC-CTGAAGTT
* * * * *
77918999 ACAGTAGAGCATG-TTGAAGTTACA
65 GCAGTGGAGTA-GATCGAAGATACA
* * * * * * *
77919023 AATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAA--TATAGCGAATCTTAT-TTCCCTAAA
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATA---AACCTTATCTT-CCTGAA
* * * *
77919085 GTTGCAGTGGAACAGATTAAAGCTACAAATTACA
62 GTTGCAGTGG---AG--TAGATCGA-AGA-TACA
* * * * * * *** *
77919119 AATCTTATCTC-CTTGAAGTTACAGTGGAGCAGATTGAAGTTACAGGTCTTAT-TGCCCTGAAGT
1 AATCTTATCTCTC-TAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCT-TCCTGAAGT
* *
77919182 TGTAGTAGAGTAGATCGAAGATAGCA
64 TGCAGTGGAGTAGATCGAAGATA-CA
* * *
77919208 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTAAAAACCTTATCTCCCTGAAGTTA
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTTCCTGAAGTTG
* * *
77919273 CAGTGGAGCAGATTGAAGATAGCG
66 CAGTGGAGTAGATCGAAGATA-CA
* * * * * * * * **
77919297 AATCCTATTTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACAGATCCTATCTCTTG
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAA--CCTTAT-CT-TC-C-TG
* * *
77919362 AAGTTGTAGTGGAGTAGATTGAAGTTACA
60 AAGTTGCAGTGGAGTAGATCGAAGATACA
* * * * * * * * *
77919391 AATCTTATCTCTCTGAAGTTGCAATAGAGTAGATCGAAA-TTAAAAATCTTATCTCCCTAAAGTT
1 AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGAT-TAAAGCTATAAACCTTATCTTCCTGAAGTT
* * *
77919455 GTAGTGGAGCAGATTGAA-ATTACA
65 GCAGTGGAGTAGATCGAAGA-TACA
* * *
77919479 ATTCCTATAC-CCCTAAAGTTGCAGT
1 AATCTTAT-CTCTCTAAAGTTGCAGT
77919504 GGGTTGGAAT
Statistics
Matches: 436, Mismatches: 101, Indels: 65
0.72 0.17 0.11
Matches are distributed among these distances:
86 4 0.01
88 83 0.19
89 199 0.46
90 11 0.03
91 5 0.01
92 9 0.02
93 1 0.00
94 34 0.08
95 50 0.11
96 37 0.08
98 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (88 bp):
AATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCTTCCTGAAGTTG
CAGTGGAGTAGATCGAAGATACA
Found at i:77919092 original size:133 final size:132
Alignment explanation
Indices: 77918849--77919290 Score: 505
Period size: 133 Copynumber: 3.3 Consensus size: 132
77918839 CGTGGCGAAT
** * * ** *
77918849 CTTATCTTCCTGAAGTTGTAGTGGAGTAGATTAAAGCCACAAATCTTATC-TTCTTGAATTTGCA
1 CTTATC-TCCTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCTTTC-TGAAGTTGCA
*
77918913 GTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTCGCAGTAGAGCAGATTAAAGCTAT
64 GTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTAT
77918978 AAAC
129 AAAC
*
77918982 CTTATCTCTCTGAAGTTACAGTAGAGCATG-TTGAAGTTACAAATCTTATCTTTCTGAAGTTGCA
1 CTTATCTC-CTGAAGTTACAGTGGAGCA-GATTGAAGTTACAAATCTTATCTTTCTGAAGTTGCA
* * * * * * *
77919046 GTGGAGCAGA-CTGAATATAGCGAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAGCTA
64 GTGGAGTAGATC-GAAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCT-
*
77919110 CAAATTACAAAT
127 ---A-T--AAAC
** ** *
77919122 CTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGTTACAGGTCTTAT-TGCCCTGAAGTTGTA
1 CTTATCTCC-TGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCT-TTCTGAAGTTGCA
* *
77919186 GTAGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTAA
64 GTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTAT
77919251 AAAC
129 AAAC
77919255 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAG
1 CTTATCT-CCTGAAGTTACAGTGGAGCAGATTGAAG
77919291 ATAGCGAATC
Statistics
Matches: 260, Mismatches: 33, Indels: 32
0.80 0.10 0.10
Matches are distributed among these distances:
132 3 0.01
133 136 0.52
134 6 0.02
136 1 0.00
137 1 0.00
138 1 0.00
139 3 0.01
140 108 0.42
141 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (132 bp):
CTTATCTCCTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCTTTCTGAAGTTGCAGT
GGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAA
AC
Found at i:77919210 original size:96 final size:96
Alignment explanation
Indices: 77919018--77919210 Score: 205
Period size: 96 Copynumber: 2.0 Consensus size: 96
77919008 CATGTTGAAG
* * *
77919018 TTACAAATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCGAATCTTATTTCCCTA
1 TTACAAATCTTATCTCTCTGAAGTTACAGTGGAGCAGACTGAATATAGCGAATCTTATTGCCCTA
* * *
77919083 AAGTTGCAGTGGAACAGATTAAAGCTACAAA
66 AAGTTGCAGTAGAACAGATCAAAGATACAAA
* *
77919114 TTACAAATCTTATCTC-CTTGAAGTTACAGTGGAGCAGATTGAAGT-TA-C-AGGTCTTATTGCC
1 TTACAAATCTTATCTCTC-TGAAGTTACAGTGGAGCAGACTGAA-TATAGCGA-ATCTTATTGCC
* * ** *
77919175 CTGAAGTTGTAGTAGAGTAGATCGAAGATAGCAAA
63 CTAAAGTTGCAGTAGAACAGATCAAAGATA-CAAA
77919210 T
1 T
77919211 CTTATCTCTC
Statistics
Matches: 80, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
94 1 0.01
95 33 0.41
96 45 0.56
97 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (96 bp):
TTACAAATCTTATCTCTCTGAAGTTACAGTGGAGCAGACTGAATATAGCGAATCTTATTGCCCTA
AAGTTGCAGTAGAACAGATCAAAGATACAAA
Found at i:77919217 original size:229 final size:227
Alignment explanation
Indices: 77918887--77919469 Score: 679
Period size: 229 Copynumber: 2.6 Consensus size: 227
77918877 GATTAAAGCC
* * * * * * * *
77918887 ACAAATCTTATCTTCTTGAATTTGCAGTGGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAA
1 ACAAATCCTATC-TCTTGAAGTTACAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAA
* * * * * * * * *
77918952 GTCGCAGTAGAGCAGAT-TAAAGCTATAAACCTTATCTCTCTGAAGTTACAGTAGAGCATG-TTG
64 GTTGCAATAGAGTAGATCGAAA-TTAAAAATCTTATCTCTCTAAAGTTACAGTAGAGCA-GATTA
* * * ** * * *
77919015 AAGTTACAAATCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTGAATATAGCGAATCTTATTTCC
127 AAGCTAAAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATCCTATTTCC
*
77919080 CTAAAGTTGCAGTGGAACAGATTAAAGCTACAAATT
192 CTAAAGTTGCAGTGGAACAAATTAAAGCTACAAATT
* **
77919116 ACAAATCTTATCTCCTTGAAGTTACAGTGGAGCAGATTGAAGTTACAGGTCTTAT-TGCCCTGAA
1 ACAAATCCTATCT-CTTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCT-CCCTGAA
* * * *
77919180 GTTGTAGTAGAGTAGATCGAAGA-TAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTA
64 GTTGCAATAGAGTAGATCGAA-ATTA-AAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATTA
*
77919244 AAGCTAAAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATAGCGAATCCTATTTCC
127 AAGCTAAAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATCCTATTTCC
77919309 CTAAAGTTGCAGTGGAACAAATTAAAGCTACAAATT
192 CTAAAGTTGCAGTGGAACAAATTAAAGCTACAAATT
* ** * *
77919345 ACAGATCCTATCTCTTGAAGTTGTAGTGGAGTAGATTGAAGTTACAAATCTTATCTCTCTGAAGT
1 ACAAATCCTATCTCTTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGT
* ** *
77919410 TGCAATAGAGTAGATCGAAATTAAAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATT
66 TGCAATAGAGTAGATCGAAATTAAAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATT
77919470 GAAATTACAA
Statistics
Matches: 304, Mismatches: 42, Indels: 18
0.84 0.12 0.05
Matches are distributed among these distances:
227 35 0.12
228 94 0.31
229 174 0.57
230 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (227 bp):
ACAAATCCTATCTCTTGAAGTTACAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGT
TGCAATAGAGTAGATCGAAATTAAAAATCTTATCTCTCTAAAGTTACAGTAGAGCAGATTAAAGC
TAAAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCGAATCCTATTTCCCTAA
AGTTGCAGTGGAACAAATTAAAGCTACAAATT
Found at i:77919444 original size:183 final size:183
Alignment explanation
Indices: 77919176--77919505 Score: 470
Period size: 183 Copynumber: 1.8 Consensus size: 183
77919166 CTTATTGCCC
*
77919176 TGAAGTTGTAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGA
1 TGAAGTTGTAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAATAGAGCAGA
* *
77919241 TTAAAGCTAAAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGA-TAGCGAA-TCCTA
66 TGAAAGCTAAAAACCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAA-ATTA-C-AATTCCTA
**
77919304 TTTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACAGATCCTATCTCT
128 TACCCCTAAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACAGATCCTATCTCT
* * * * *
77919360 TGAAGTTGTAGTGGAGTAGATTGAAGTTA-CAAATCTTATCTCTCTGAAGTTGCAATAGAGTAGA
1 TGAAGTTGTAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAATAGAGCAGA
* * **
77919424 TCGAAA-TTAAAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAATTACAATTCCTATA
66 T-GAAAGCTAAAAACCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAATTACAATTCCTATA
77919488 CCCCTAAAGTTGCAGTGG
130 CCCCTAAAGTTGCAGTGG
77919506 GTTGGAATGA
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
181 2 0.02
182 25 0.19
183 73 0.57
184 29 0.22
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (183 bp):
TGAAGTTGTAGTAGAGTAGATCGAAGATAGCAAATCTTATCTCTCTAAAGTTGCAATAGAGCAGA
TGAAAGCTAAAAACCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAATTACAATTCCTATAC
CCCTAAAGTTGCAGTGGAACAAATTAAAGCTACAAATTACAGATCCTATCTCT
Found at i:77919474 original size:44 final size:44
Alignment explanation
Indices: 77919340--77919505 Score: 165
Period size: 44 Copynumber: 3.8 Consensus size: 44
77919330 TTAAAGCTAC
* * * * *
77919340 AAATTACAGATCCTATCT-CTTGAAGTTGTAGTGGAGTAGATTG
1 AAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTG
* * * * * *
77919383 AAGTTACAAATCTTATCTCTCTGAAGTTGCAATAGAGTAGATCG
1 AAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTG
* * *
77919427 AAATTAAAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTG
1 AAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTG
* *
77919471 AAATTACAATTCCTATAC-CCCTAAAGTTGCAGTGG
1 AAATTACAAATCTTAT-CTCCCTAAAGTTGCAGTGG
77919506 GTTGGAATGA
Statistics
Matches: 99, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
43 15 0.15
44 83 0.84
45 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.32
Consensus pattern (44 bp):
AAATTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTG
Found at i:77921222 original size:64 final size:64
Alignment explanation
Indices: 77921090--77921240 Score: 173
Period size: 64 Copynumber: 2.4 Consensus size: 64
77921080 CACTTATTTT
* * * * * *
77921090 ATTTATTTATTTATTCTTTTA-CTTTTAAAATACTTAAATTTAACATTATTTGTTTTGCCTATTT
1 ATTTATTTA-TTATTCTTTTATTTTTTAAAATACTTAAATTTAACATTACTTATCTTCCCTATTC
* *
77921154 ATTTATTTATTATTCTTTTATTTTTTAAAATATTTAAATTTAATATTACTTATACTTCCCT-TTC
1 ATTTATTTATTATTCTTTTATTTTTTAAAATACTTAAATTTAACATTACTTAT-CTTCCCTATTC
*
77921218 ATTTATTTTTTTATT-TTTTATTT
1 ATTTA-TTTATTATTCTTTTATTT
77921241 CAAAGTTACT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
63 11 0.15
64 51 0.68
65 13 0.17
ACGTcount: A:0.27, C:0.09, G:0.01, T:0.63
Consensus pattern (64 bp):
ATTTATTTATTATTCTTTTATTTTTTAAAATACTTAAATTTAACATTACTTATCTTCCCTATTC
Found at i:77925753 original size:2 final size:2
Alignment explanation
Indices: 77925746--77925774 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
77925736 CACTCTTATT
77925746 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77925775 TTTTTACAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77930034 original size:23 final size:23
Alignment explanation
Indices: 77929970--77930048 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
77929960 GAAAACTCAT
*
77929970 AAGAGCCTTAATCAGGAAGTTCACA
1 AAGAGCC-T-ATCAGGAAGCTCACA
* * * *
77929995 AAGAATCATATCGGGAAGCTCGCA
1 AAG-AGCCTATCAGGAAGCTCACA
77930019 AAGAGCCTATCAGGAAGCTCACA
1 AAGAGCCTATCAGGAAGCTCACA
77930042 AAGAGCC
1 AAGAGCC
77930049 ATGTAATGGG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
23 23 0.52
24 15 0.34
25 4 0.09
26 2 0.05
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (23 bp):
AAGAGCCTATCAGGAAGCTCACA
Found at i:77933587 original size:29 final size:29
Alignment explanation
Indices: 77933497--77933656 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
77933487 ACTCGATTTC
* * **
77933497 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
77933526 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
77933554 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
77933584 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77933613 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77933642 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77933657 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:77938543 original size:29 final size:29
Alignment explanation
Indices: 77938453--77938612 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
77938443 ACTCGATTTC
* * **
77938453 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
77938482 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
77938510 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
77938540 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77938569 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77938598 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77938613 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:77946703 original size:29 final size:29
Alignment explanation
Indices: 77946613--77946772 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
77946603 ACTCGATTTC
* * **
77946613 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
77946642 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
77946670 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
77946700 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77946729 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
77946758 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
77946773 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:77950151 original size:16 final size:15
Alignment explanation
Indices: 77950130--77950159 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
77950120 ATTAACCATA
77950130 TATTTAGTTATTTTTT
1 TATTTAGTT-TTTTTT
77950146 TATTTAGTTTTTTT
1 TATTTAGTTTTTTT
77950160 ATATAATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.77
Consensus pattern (15 bp):
TATTTAGTTTTTTTT
Found at i:77950822 original size:35 final size:35
Alignment explanation
Indices: 77950751--77950824 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 35
77950741 TTTTTTCCTG
* *
77950751 TTATGTTATGCTTGAAAGTTTTGTTAAGGGATTAC
1 TTATGTTATGCTTGAAAGTTTTGTTAAGGAACTAC
77950786 TTATGTT-TGCTTGAAAG-TTTGTTAAGGAAAACTAC
1 TTATGTTATGCTTGAAAGTTTTGTTAAGG--AACTAC
77950821 TTAT
1 TTAT
77950825 ATTTATATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 10 0.29
34 10 0.29
35 15 0.43
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (35 bp):
TTATGTTATGCTTGAAAGTTTTGTTAAGGAACTAC
Found at i:77950852 original size:11 final size:11
Alignment explanation
Indices: 77950821--77950854 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
77950811 GGAAAACTAC
77950821 TTATATTTATA
1 TTATATTTATA
*
77950832 TTAAATTTATA
1 TTATATTTATA
*
77950843 TTATAGTTATA
1 TTATATTTATA
77950854 T
1 T
77950855 CATCAATGTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (11 bp):
TTATATTTATA
Found at i:77958607 original size:23 final size:23
Alignment explanation
Indices: 77958567--77958611 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77958557 GTAGAAATTG
77958567 AATTAGAAGCTGAGTGAGATATGA
1 AATTAGAAGCTGAGTGAG-TATGA
* *
77958591 AATTA-AAGCTTATTGAGTATG
1 AATTAGAAGCTGAGTGAGTATG
77958612 TTTTCATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 10 0.53
24 5 0.26
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.31
Consensus pattern (23 bp):
AATTAGAAGCTGAGTGAGTATGA
Found at i:77967532 original size:93 final size:93
Alignment explanation
Indices: 77967420--77967590 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77967410 GCCCATAAGC
* *
77967420 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGAATCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
77967485 CAAGTTCGGATGCCTAGTTACATCTCAT
66 CAAGTTCGGATGCCTAGTTACATCTCAT
* *
77967513 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
*
77967578 CGAGTTCGGATGC
66 CAAGTTCGGATGC
77967591 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGAATCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAT
Found at i:77967587 original size:46 final size:46
Alignment explanation
Indices: 77967412--77967587 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
77967402 TGTAACCCGC
* * * *
77967412 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
77967458 CCATAAGTGAACTCGGAATCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
77967508 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
77967551 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77967588 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:77970432 original size:16 final size:16
Alignment explanation
Indices: 77970411--77970446 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
77970401 CTTATTTATA
77970411 AAGTTTGTAAAATGGG
1 AAGTTTGTAAAATGGG
77970427 AAGTTTGTAAAATGGG
1 AAGTTTGTAAAATGGG
77970443 AAGT
1 AAGT
77970447 AAGATGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.31
Consensus pattern (16 bp):
AAGTTTGTAAAATGGG
Found at i:77973872 original size:2 final size:2
Alignment explanation
Indices: 77973867--77973899 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
77973857 GTGCGTACTC
*
77973867 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
77973900 CTCCGATCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:77978377 original size:42 final size:42
Alignment explanation
Indices: 77978330--77978436 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
77978320 TATTGGTCTC
77978330 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
77978372 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
77978414 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
77978437 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:77978501 original size:27 final size:28
Alignment explanation
Indices: 77978444--77978513 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
77978434 AAAATTGTAC
**
77978444 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
77978472 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
77978499 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
77978514 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:77983481 original size:30 final size:30
Alignment explanation
Indices: 77983445--77983505 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
77983435 TTCCTGAGCC
77983445 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
77983475 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
77983505 T
1 T
77983506 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:77986367 original size:26 final size:26
Alignment explanation
Indices: 77986280--77986524 Score: 181
Period size: 26 Copynumber: 9.4 Consensus size: 26
77986270 TAATAGTACG
*
77986280 TGCT-AATAATTCACTGGCTTCAA-GCC
1 TGCTAAATAA-TCACCGGC-TCAAGGCC
* * * *
77986306 TACTAAAATAAACACCAGCTCATGGCC
1 TGCT-AAATAATCACCGGCTCAAGGCC
*** * *
77986333 TTAGAAATAACCATCGGCTCAAGGCC
1 TGCTAAATAATCACCGGCTCAAGGCC
* * *
77986359 TGCTTAATAGTCACCGGCTCATA-GCA
1 TGCTAAATAATCACCGGCTCA-AGGCC
** * * *
77986385 TGCTACTTAAGCACCAGTTCAAGGCC
1 TGCTAAATAATCACCGGCTCAAGGCC
* ** *
77986411 TACTAAATAATCACCTACTCAAGGCT
1 TGCTAAATAATCACCGGCTCAAGGCC
* *
77986437 TGCTAAATAATCACCGACTCAAGGAC
1 TGCTAAATAATCACCGGCTCAAGGCC
* *
77986463 TCCTAAATAAACACCGGCTCAAGGCC
1 TGCTAAATAATCACCGGCTCAAGGCC
*
77986489 TGCTAAATAATCACCGACTCAAGGCC
1 TGCTAAATAATCACCGGCTCAAGGCC
*
77986515 TCCTAAATAA
1 TGCTAAATAA
77986525 ACATTGGCTC
Statistics
Matches: 166, Mismatches: 48, Indels: 10
0.74 0.21 0.04
Matches are distributed among these distances:
25 1 0.01
26 150 0.90
27 10 0.06
28 5 0.03
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (26 bp):
TGCTAAATAATCACCGGCTCAAGGCC
Found at i:77986451 original size:78 final size:78
Alignment explanation
Indices: 77986311--77986524 Score: 225
Period size: 78 Copynumber: 2.7 Consensus size: 78
77986301 AAGCCTACTA
* * * * * * *
77986311 AAATAAACACCAGCTCATGGCCTTA-GAAATAACCATCGGCTCAAGGCCTGCTTAATAGTCACCG
1 AAATAAACACCAGCTCAAGGCC-TACTAAATAATCACCGACTCAAGGCCTGCTAAATAATCACCG
* *
77986375 GCTCATAGCA-TGCT
65 ACTCA-AGCACTCCT
** * * * *
77986389 ACTTAAGCACCAGTTCAAGGCCTACTAAATAATCACCTACTCAAGGCTTGCTAAATAATCACCGA
1 AAATAAACACCAGCTCAAGGCCTACTAAATAATCACCGACTCAAGGCCTGCTAAATAATCACCGA
*
77986454 CTCAAGGACTCCT
66 CTCAAGCACTCCT
* * *
77986467 AAATAAACACCGGCTCAAGGCCTGCTAAATAATCACCGACTCAAGGCCTCCTAAATAA
1 AAATAAACACCAGCTCAAGGCCTACTAAATAATCACCGACTCAAGGCCTGCTAAATAA
77986525 ACATTGGCTC
Statistics
Matches: 109, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
77 5 0.05
78 104 0.95
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (78 bp):
AAATAAACACCAGCTCAAGGCCTACTAAATAATCACCGACTCAAGGCCTGCTAAATAATCACCGA
CTCAAGCACTCCT
Found at i:77986534 original size:52 final size:52
Alignment explanation
Indices: 77986403--77986545 Score: 196
Period size: 52 Copynumber: 2.8 Consensus size: 52
77986393 AAGCACCAGT
* * * **
77986403 TCAAGGCCTACTAAATAATCACCTACTCAAGGCTTGCTAAATAATCACCGAC
1 TCAAGGACTCCTAAATAAACACCGGCTCAAGGCTTGCTAAATAATCACCGAC
*
77986455 TCAAGGACTCCTAAATAAACACCGGCTCAAGGCCTGCTAAATAATCACCGAC
1 TCAAGGACTCCTAAATAAACACCGGCTCAAGGCTTGCTAAATAATCACCGAC
* ** *
77986507 TCAAGGCCTCCTAAATAAACATTGGCTCATGGCTTGCTA
1 TCAAGGACTCCTAAATAAACACCGGCTCAAGGCTTGCTA
77986546 GATATCATAT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 80 1.00
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (52 bp):
TCAAGGACTCCTAAATAAACACCGGCTCAAGGCTTGCTAAATAATCACCGAC
Found at i:77990748 original size:43 final size:42
Alignment explanation
Indices: 77990681--77990844 Score: 188
Period size: 43 Copynumber: 3.9 Consensus size: 42
77990671 AAAGCTCGTA
* * *
77990681 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA-ATAT
* * * *
77990723 CAATGCCACTGTCCCAGACAAGGTCTTACACGTAATCAATTAA
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAA-TAT
* *
77990766 CGATGCCAATGTCCCAAACATGGTCTTACATGTAATC-ATAAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAT-AT
*
77990808 ACAATGCCAATGTCCCAGACATTGTCTTACATGTAAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
77990845 TTCATCTTAG
Statistics
Matches: 102, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
41 1 0.01
42 10 0.10
43 91 0.89
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (42 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAATAT
Found at i:77992936 original size:49 final size:45
Alignment explanation
Indices: 77992872--77993088 Score: 197
Period size: 49 Copynumber: 4.6 Consensus size: 45
77992862 CAAAGTAGAA
77992872 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCTAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACT-AC--TCATATATC-AGGCTGAT
* * * *
77992921 GTCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCAGTG-TCGAT
1 GCCATGTCCCAGACAGGTCTTACACT---ACTCATATATCAG-GCT-GAT
* * * *
77992970 GCCATGTCCTAGACAGGTCTTACACTA-ACATATAACAAGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTACTCATATATCAGGCTGAT
* *
77993014 GCCATGTCCCAGACAGGTCTTACACTAGCTCGTATATCTCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTA-CTC--ATATATC-AGGCTGAT
*
77993063 G-CATGTCCCAGACATGTCTTACACTA
1 GCCATGTCCCAGACAGGTCTTACACTA
77993089 GCCCACATAT
Statistics
Matches: 138, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
44 30 0.22
45 8 0.06
46 1 0.01
48 32 0.23
49 66 0.48
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (45 bp):
GCCATGTCCCAGACAGGTCTTACACTACTCATATATCAGGCTGAT
Found at i:77993063 original size:93 final size:95
Alignment explanation
Indices: 77992872--77993088 Score: 255
Period size: 93 Copynumber: 2.3 Consensus size: 95
77992862 CAAAGTAGAA
* * * * *
77992872 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCTAGGCTGATGTCGTGTCCCAGACAG
1 GCCATGTCCCAGACAGGTCTTACACT-A--TACATATAACTAAGCTGATGCCATGTCCCAGACAG
* * *
77992937 GTCTTACACTGGCTCTCATCTATCAGTGTCGAT
63 GTCTTACACTAGCTCTCATATATCAGTGCCGAT
*
77992970 GCCATGTCCTAGACAGGTCTTACACTA-ACATATAAC-AAGCTGATGCCATGTCCCAGACAGGTC
1 GCCATGTCCCAGACAGGTCTTACACTATACATATAACTAAGCTGATGCCATGTCCCAGACAGGTC
*
77993033 TTACACTAGCTCGT-ATATCTCGAG-GCCGAT
66 TTACACTAGCTC-TCATATATC-AGTGCCGAT
*
77993063 G-CATGTCCCAGACATGTCTTACACTA
1 GCCATGTCCCAGACAGGTCTTACACTA
77993089 GCCCACATAT
Statistics
Matches: 105, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
92 23 0.22
93 46 0.44
94 10 0.10
97 1 0.01
98 25 0.24
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (95 bp):
GCCATGTCCCAGACAGGTCTTACACTATACATATAACTAAGCTGATGCCATGTCCCAGACAGGTC
TTACACTAGCTCTCATATATCAGTGCCGAT
Found at i:78000695 original size:50 final size:49
Alignment explanation
Indices: 78000574--78000760 Score: 216
Period size: 50 Copynumber: 3.8 Consensus size: 49
78000564 TGAGGTCGCA
* * * *
78000574 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
78000625 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
78000675 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
78000724 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
78000761 TAGCTTCGGC
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.34
50 43 0.36
51 31 0.26
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:78003771 original size:15 final size:15
Alignment explanation
Indices: 78003751--78003815 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
78003741 GTATCTTGGG
78003751 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
78003766 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
78003781 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
78003796 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
78003810 TTTCTT
1 TTTCTT
78003816 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:78003783 original size:30 final size:31
Alignment explanation
Indices: 78003747--78003815 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
78003737 TATCGTATCT
78003747 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
78003777 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
78003807 -GGTTTTCTT
1 TGGGTTTCTT
78003816 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:78006068 original size:49 final size:48
Alignment explanation
Indices: 78005946--78006089 Score: 171
Period size: 49 Copynumber: 2.9 Consensus size: 48
78005936 TCTATTGTGA
* * *
78005946 GGTCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCATACCCGAAAAATGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGAATGT
* * * * * *
78005997 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAATG-T
78006046 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
78006090 TAGCTTCGGC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 4 0.05
49 40 0.51
50 2 0.03
51 32 0.41
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAATGT
Found at i:78010167 original size:26 final size:26
Alignment explanation
Indices: 78010087--78010310 Score: 125
Period size: 26 Copynumber: 8.6 Consensus size: 26
78010077 GATAATAGTA
* *
78010087 CCTGCT-AATAATTCACCGGCTTAAAG
1 CCTGCTAAATAA-TCACCGGCTCAAGG
* * * * *
78010113 CCTACTAAAATAAACACCGACTTATGG
1 CCTGCT-AAATAATCACCGGCTCAAGG
* *
78010140 CCTGCTAAATAACCACCAGCTCAAGG
1 CCTGCTAAATAATCACCGGCTCAAGG
* * *
78010166 CCTGTTAAATAATCATCGGCTCATA-T
1 CCTGCTAAATAATCACCGGCTCA-AGG
* * *
78010192 CTTGCTAAATAATTACCGGCTTAAGG
1 CCTGCTAAATAATCACCGGCTCAAGG
*
78010218 CTTGCTAAATAATCACCGGCTCATA-G
1 CCTGCTAAATAATCACCGGCTCA-AGG
* * * ** *
78010244 TCTACTAATTAATCATTGGCTTATA-G
1 CCTGCTAAATAATCACCGGCTCA-AGG
* * * *
78010270 CCTACTAATTAATCATCGGCTCATGG
1 CCTGCTAAATAATCACCGGCTCAAGG
*
78010296 CCTGCTAGAT-ATCAC
1 CCTGCTAAATAATCAC
78010311 ATCATATACT
Statistics
Matches: 153, Mismatches: 39, Indels: 13
0.75 0.19 0.06
Matches are distributed among these distances:
25 5 0.03
26 126 0.82
27 17 0.11
28 5 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CCTGCTAAATAATCACCGGCTCAAGG
Found at i:78010265 original size:52 final size:52
Alignment explanation
Indices: 78010144--78010293 Score: 151
Period size: 52 Copynumber: 2.9 Consensus size: 52
78010134 TTATGGCCTG
* * * * *
78010144 CTAAATAACCACCAGCTCAAGGCCTGTTAAATAATCATCGGCTCATATCTTG
1 CTAAATAATCACCGGCTTAAGGCCTGCTAAATAATCATCGGCTCATATCTTA
* * *
78010196 CTAAATAATTACCGGCTTAAGGCTTGCTAAATAATCACCGGCTCATAGTC-TA
1 CTAAATAATCACCGGCTTAAGGCCTGCTAAATAATCATCGGCTCATA-TCTTA
* ** * *
78010248 CTAATTAATCATTGGCTTATA-GCCTACTAATTAATCATCGGCTCAT
1 CTAAATAATCACCGGCTTA-AGGCCTGCTAAATAATCATCGGCTCAT
78010294 GGCCTGCTAG
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
52 77 0.96
53 3 0.04
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (52 bp):
CTAAATAATCACCGGCTTAAGGCCTGCTAAATAATCATCGGCTCATATCTTA
Found at i:78010302 original size:78 final size:78
Alignment explanation
Indices: 78010093--78010310 Score: 197
Period size: 78 Copynumber: 2.8 Consensus size: 78
78010083 AGTACCTGCT
* * * * *
78010093 AATAATTCACCGGCTTAAAGCCTACTAAAATAAACACCGACTTATGGCCTGCTAAATAACCACCA
1 AATAA-TCATCGGCTTATAGCCTACT-AAATAATCACCGGCTTATGGCCTGCTAAATAATCACCA
**
78010158 GCTCAAGGCCTGTTA
64 GCTCAAGGCCTACTA
* * * * * * * *
78010173 AATAATCATCGGCTCATATCTTGCTAAATAATTACCGGCTTAAGGCTTGCTAAATAATCACCGGC
1 AATAATCATCGGCTTATAGCCTACTAAATAATCACCGGCTTATGGCCTGCTAAATAATCACCAGC
*
78010238 TCATA-GTCTACTA
66 TCA-AGGCCTACTA
* * * * * *
78010251 ATTAATCATTGGCTTATAGCCTACTAATTAATCATCGGCTCATGGCCTGCTAGAT-ATCAC
1 AATAATCATCGGCTTATAGCCTACTAAATAATCACCGGCTTATGGCCTGCTAAATAATCAC
78010311 ATCATATACT
Statistics
Matches: 108, Mismatches: 29, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
77 5 0.05
78 83 0.77
79 15 0.14
80 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (78 bp):
AATAATCATCGGCTTATAGCCTACTAAATAATCACCGGCTTATGGCCTGCTAAATAATCACCAGC
TCAAGGCCTACTA
Found at i:78012681 original size:27 final size:26
Alignment explanation
Indices: 78012644--78012758 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
78012634 AGTATGGCTG
* *
78012644 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
78012670 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
78012698 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
78012725 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
78012752 CCAGAAC
1 CCAGAAC
78012759 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:78012703 original size:54 final size:54
Alignment explanation
Indices: 78012644--78012758 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
78012634 AGTATGGCTG
*
78012644 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
78012698 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
78012752 CCAGAAC
1 CCAGAAC
78012759 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:78014408 original size:26 final size:26
Alignment explanation
Indices: 78014372--78014481 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
78014362 CATGAAATTC
78014372 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
78014398 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
78014424 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
78014450 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
78014476 TTATCA
1 TTATCA
78014482 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:78018477 original size:27 final size:26
Alignment explanation
Indices: 78018440--78018553 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
78018430 AGCATGGCTG
* *
78018440 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
78018466 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
78018494 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
78018521 CCAGATCAGAT-ATTTGTGCATAGCCA
1 CCAGAACAGATAATGTG-GCAGAGCCA
78018547 CCAGAAC
1 CCAGAAC
78018554 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
25 4 0.05
26 19 0.24
27 38 0.49
28 17 0.22
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:78018504 original size:54 final size:53
Alignment explanation
Indices: 78018440--78018553 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 53
78018430 AGCATGGCTG
*
78018440 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGT-GCAGAGCCA
* * * *
78018494 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGCAGAGCCA
78018547 CCAGAAC
1 CCAGAAC
78018554 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 15 0.28
54 21 0.39
55 18 0.33
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGCAGAGCCA
Found at i:78020193 original size:25 final size:26
Alignment explanation
Indices: 78020159--78020267 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
78020149 CATGAAATTC
78020159 TTATCATGAAACATTTACCTAACC-A
1 TTATCATGAAACATTTACCTAACCTA
*
78020184 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
78020210 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
78020236 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
78020262 TTATCA
1 TTATCA
78020268 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 24 0.30
26 57 0.70
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:78023576 original size:93 final size:93
Alignment explanation
Indices: 78023463--78023634 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
78023453 CGCCCATAAG
* *
78023463 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78023528 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
78023556 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78023621 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
78023635 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:78023631 original size:46 final size:46
Alignment explanation
Indices: 78023456--78023631 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
78023446 TGTAACCCGC
* * *
78023456 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
78023502 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
78023552 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
78023595 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
78023632 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:78031079 original size:46 final size:46
Alignment explanation
Indices: 78031012--78031184 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
78031002 TGTAACCCGC
78031012 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGGCGTTCGCAT
* *
78031058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
78031108 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
78031151 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
78031185 AGATGCTCAA
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 4 0.04
46 58 0.54
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:78031132 original size:93 final size:93
Alignment explanation
Indices: 78031019--78031190 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
78031009 CGCCCATAAG
* *
78031019 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
78031083 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCAGATGCCTAGTTACATCTCA
78031112 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
78031177 ACGAGTTCAGATGC
66 ACGAGTTCAGATGC
78031191 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:78031206 original size:46 final size:44
Alignment explanation
Indices: 78031063--78031206 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
78031053 CGCATCCATA
*
78031063 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCC-A---ACCATCT
* * * * *
78031110 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTC--AGATGC-CAACCATCT
78031156 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGC-CAACCAT-CT
78031202 AGTGA
1 AGTGA
78031207 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
44 10 0.13
45 1 0.01
46 31 0.40
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCAACCATCT
Found at i:78035009 original size:20 final size:20
Alignment explanation
Indices: 78034986--78035026 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
78034976 TTTCATTTAG
*
78034986 CTCACATGAGCTTCAGTTAA
1 CTCACATGAACTTCAGTTAA
* *
78035006 CTCATATGAATTTCAGTTAA
1 CTCACATGAACTTCAGTTAA
78035026 C
1 C
78035027 CCTAATGGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CTCACATGAACTTCAGTTAA
Found at i:78040882 original size:14 final size:14
Alignment explanation
Indices: 78040863--78040899 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
78040853 AAACAGATCA
78040863 GATCCTTCACACGT
1 GATCCTTCACACGT
78040877 GATCCTTCACACGT
1 GATCCTTCACACGT
*
78040891 GATTCTTCA
1 GATCCTTCA
78040900 TACTGAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (14 bp):
GATCCTTCACACGT
Found at i:78042850 original size:46 final size:46
Alignment explanation
Indices: 78042676--78042850 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
78042666 GGTTGAGCAT
* * *
78042676 CCGAGCTCGTTGAGTTGAGTCCGAGTTCAATTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * * * * *
78042722 CAGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAT-C-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGAATGC
* * *
78042767 ATCTGAACTTGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
78042815 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78042851 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
45 3 0.03
46 63 0.62
47 32 0.32
48 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:78045317 original size:20 final size:20
Alignment explanation
Indices: 78045289--78045329 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
78045279 TTTCGTTTAG
78045289 CTCACATGAGCTTCAGTTAA
1 CTCACATGAGCTTCAGTTAA
* * *
78045309 CTCATATGAGTTTTAGTTAA
1 CTCACATGAGCTTCAGTTAA
78045329 C
1 C
78045330 CCTAATGGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (20 bp):
CTCACATGAGCTTCAGTTAA
Found at i:78047983 original size:35 final size:29
Alignment explanation
Indices: 78047906--78047966 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
78047896 TGCCTAATGA
78047906 ATTCGATAAAAAATAAATGTTATATTTAT
1 ATTCGATAAAAAATAAATGTTATATTTAT
78047935 ATTCGATAAAAAATAAATGTTATATTTAT
1 ATTCGATAAAAAATAAATGTTATATTTAT
78047964 ATT
1 ATT
78047967 TGATTCTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.43
Consensus pattern (29 bp):
ATTCGATAAAAAATAAATGTTATATTTAT
Found at i:78057237 original size:15 final size:15
Alignment explanation
Indices: 78057210--78057250 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
78057200 CTTATATTTA
*
78057210 TTTT-ATTAATAATG
1 TTTTCATTATTAATG
78057224 TTTTCATTATTAATG
1 TTTTCATTATTAATG
78057239 -TTTCAATTATTA
1 TTTTC-ATTATTA
78057251 TCAATTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (15 bp):
TTTTCATTATTAATG
Found at i:78061890 original size:16 final size:17
Alignment explanation
Indices: 78061859--78061891 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
78061849 TGTATGATGT
78061859 CTGAACTGAGATGTATG
1 CTGAACTGAGATGTATG
*
78061876 CTGATCTGA-ATGTATG
1 CTGAACTGAGATGTATG
78061892 GACTGAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (17 bp):
CTGAACTGAGATGTATG
Found at i:78062816 original size:28 final size:28
Alignment explanation
Indices: 78062772--78062828 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
78062762 CTAAGTTACG
*
78062772 AAACTCGACTGTGGATTTGGGTTTTAAA
1 AAACTCGACTGTAGATTTGGGTTTTAAA
*
78062800 AAACTTGACTGTAGATTTGGGTTTTAAA
1 AAACTCGACTGTAGATTTGGGTTTTAAA
78062828 A
1 A
78062829 CTTAGTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.37
Consensus pattern (28 bp):
AAACTCGACTGTAGATTTGGGTTTTAAA
Found at i:78067521 original size:28 final size:28
Alignment explanation
Indices: 78067489--78067587 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
78067479 GCCATAAGCC
*
78067489 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
78067517 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* ** * *
78067545 TGCACACTTAGTGCTGCATAATTTGAACC
1 CGCACACTTAGTGCTTAATAA-TCGAACT
78067574 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78067588 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 40 0.68
29 17 0.29
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:78074087 original size:27 final size:27
Alignment explanation
Indices: 78074057--78074210 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
78074047 ATAGTGAATC
78074057 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
78074084 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
78074112 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
78074139 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
78074168 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
78074197 TGCACACTTAGTGC
1 CGCACACTTAGTGC
78074211 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:78074104 original size:29 final size:28
Alignment explanation
Indices: 78074057--78074210 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
78074047 ATAGTGAATC
78074057 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
78074084 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
78074112 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
78074139 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
78074168 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
78074197 TGCACACTTAGTGC
1 CGCACACTTAGTGC
78074211 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:78074128 original size:55 final size:55
Alignment explanation
Indices: 78074057--78074160 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
78074047 ATAGTGAATC
78074057 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
78074112 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
78074161 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:78074856 original size:2 final size:2
Alignment explanation
Indices: 78074844--78074882 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
78074834 TGATGGTCGA
*
78074844 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78074883 CAACTATGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:78080577 original size:27 final size:27
Alignment explanation
Indices: 78080547--78080700 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
78080537 ATAGTGAATC
78080547 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
78080574 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
78080602 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
78080629 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
78080658 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
78080687 TGCACACTTAGTGC
1 CGCACACTTAGTGC
78080701 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:78080594 original size:29 final size:28
Alignment explanation
Indices: 78080547--78080700 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
78080537 ATAGTGAATC
78080547 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
78080574 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
78080602 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
78080629 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
78080658 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
78080687 TGCACACTTAGTGC
1 CGCACACTTAGTGC
78080701 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:78080618 original size:55 final size:55
Alignment explanation
Indices: 78080547--78080650 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
78080537 ATAGTGAATC
78080547 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
78080602 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
78080651 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:78087385 original size:27 final size:27
Alignment explanation
Indices: 78087355--78087508 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
78087345 ATAGTGAATC
78087355 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
78087382 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
78087410 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
78087437 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
78087466 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
78087495 TGCACACTTAGTGC
1 CGCACACTTAGTGC
78087509 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:78087402 original size:29 final size:28
Alignment explanation
Indices: 78087355--78087508 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
78087345 ATAGTGAATC
78087355 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
78087382 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
78087410 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
78087437 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
78087466 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
78087495 TGCACACTTAGTGC
1 CGCACACTTAGTGC
78087509 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:78087426 original size:55 final size:55
Alignment explanation
Indices: 78087355--78087458 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
78087345 ATAGTGAATC
78087355 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
78087410 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
78087459 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:78101970 original size:16 final size:16
Alignment explanation
Indices: 78101949--78101982 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
78101939 TTTTAAGGTA
78101949 ACCTACAATGTAATTT
1 ACCTACAATGTAATTT
78101965 ACCTACAATGTAATTT
1 ACCTACAATGTAATTT
78101981 AC
1 AC
78101983 TCTATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (16 bp):
ACCTACAATGTAATTT
Found at i:78113445 original size:25 final size:25
Alignment explanation
Indices: 78113417--78113484 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
78113407 TTTAAATAAT
78113417 TGGGGCAAAGCCCTTTTCGATAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
*
78113442 TGGGGCAAAGCCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
*
78113467 TGGGGCAAAGCCTTTTTC
1 TGGGGCAAAGCCCTTTTC
78113485 CACACTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGATAAAC
Found at i:78113553 original size:11 final size:11
Alignment explanation
Indices: 78113539--78113600 Score: 74
Period size: 11 Copynumber: 5.8 Consensus size: 11
78113529 ATATATCATA
78113539 GCATATCATGT
1 GCATATCATGT
*
78113550 GCATATCAT-A
1 GCATATCATGT
*
78113560 ACATATCATGT
1 GCATATCATGT
*
78113571 GCATATCAT-A
1 GCATATCATGT
*
78113581 ACATATCATGT
1 GCATATCATGT
78113592 GCATATCAT
1 GCATATCAT
78113601 TTCATATTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 16 0.39
11 25 0.61
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (11 bp):
GCATATCATGT
Found at i:78113559 original size:5 final size:5
Alignment explanation
Indices: 78113531--78113607 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
78113521 TATAGTGAAT
* * * * *
78113531 ATATC ATAGC ATATC ATGTGC ATATC ATAAC ATATC ATGTGC ATATC ATAAC
1 ATATC ATATC ATATC ATAT-C ATATC ATATC ATATC ATAT-C ATATC ATATC
* *
78113583 ATATC ATGTGC ATATC ATTTC ATAT
1 ATATC ATAT-C ATATC ATATC ATAT
78113608 TATGTATATC
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
5 43 0.78
6 12 0.22
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (5 bp):
ATATC
Found at i:78113612 original size:21 final size:21
Alignment explanation
Indices: 78113531--78113600 Score: 131
Period size: 21 Copynumber: 3.3 Consensus size: 21
78113521 TATAGTGAAT
*
78113531 ATATCATAGCATATCATGTGC
1 ATATCATAACATATCATGTGC
78113552 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
78113573 ATATCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
78113594 ATATCAT
1 ATATCAT
78113601 TTCATATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:78121686 original size:6 final size:6
Alignment explanation
Indices: 78121668--78121724 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
78121658 AAGAAACATT
* *
78121668 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
78121717 ATCAGA AT
1 ATCAGA AT
78121725 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 3 0.07
6 33 0.79
7 4 0.10
8 2 0.05
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:78122597 original size:27 final size:27
Alignment explanation
Indices: 78122111--78122589 Score: 561
Period size: 27 Copynumber: 17.9 Consensus size: 27
78122101 ACACCCTAAA
* * * *
78122111 GGTAAAATGGTAATTTTATAAATTGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* * *
78122138 GGTAAAATGGTAATTTTATAAATCGA-
1 GGTAAAATAGTAATTCTGTAAATCGAG
* * *
78122164 TGTAAAATAGTAATTTTGTAAATCAAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
** *
78122191 GGTAAAACGGTAATTCTGTTAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
*
78122218 GGTAAAA-AGTAATTTTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
78122244 GGTAAAAT-GATAATTCTGTAAATCGAG
1 GGTAAAATAG-TAATTCTGTAAATCGAG
* * *
78122271 GGTAAAACAGTAATTTTGTAAATTGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* *
78122298 GGTAAAA-CGTAATTCTATAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* * *
78122324 GGTAAAACAGTAATTCTGTCAATCGAA
1 GGTAAAATAGTAATTCTGTAAATCGAG
** *
78122351 GGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* *
78122378 GGTAAAACAGTAATTTTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
*
78122405 GGTAAAATAGTAACTCTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
* *
78122432 GGTAAAATAGTAATTCTGTAAATCAAA
1 GGTAAAATAGTAATTCTGTAAATCGAG
** * *
78122459 GGTAAAACGGTAATTTTGTAAATCAAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
** * *
78122486 GGTAAAACGGTAATTTTGTAAATTGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
78122513 GGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
*
78122540 GGTAAAATAGTAATTCTGTATATCGAG
1 GGTAAAATAGTAATTCTGTAAATCGAG
*
78122567 GGTAAAATGGTAATTCTGTAAAT
1 GGTAAAATAGTAATTCTGTAAAT
78122590 TGGGGGTACT
Statistics
Matches: 395, Mismatches: 52, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
26 68 0.17
27 326 0.83
28 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
GGTAAAATAGTAATTCTGTAAATCGAG
Found at i:78122608 original size:54 final size:54
Alignment explanation
Indices: 78122111--78122589 Score: 622
Period size: 54 Copynumber: 8.9 Consensus size: 54
78122101 ACACCCTAAA
** * * * *
78122111 GGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGA-
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
* * * * *
78122164 TGTAAAATAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTTAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
*
78122218 GGTAAAA-AGTAATTTTGTAAATCGAGGGTAAAATGATAATTCTGTAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
* * *
78122271 GGTAAAACAGTAATTTTGTAAATTGAGGGTAAAA-CGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
* * * * *
78122324 GGTAAAACAGTAATTCTGTCAATCGAAGGTAAAACGGTAATTCTATAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
* *
78122378 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAACTCTGTAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
* * * * * * *
78122432 GGTAAAATAGTAATTCTGTAAATCAAAGGTAAAACGGTAATTTTGTAAATCAAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
* * *
78122486 GGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATAGTAATTCTGTAAATCGAG
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
* * *
78122540 GGTAAAATAGTAATTCTGTATATCGAGGGTAAAATGGTAATTCTGTAAAT
1 GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT
78122590 TGGGGGTACT
Statistics
Matches: 368, Mismatches: 55, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
53 139 0.38
54 229 0.62
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
GGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
Found at i:78122704 original size:26 final size:27
Alignment explanation
Indices: 78122590--78122716 Score: 123
Period size: 27 Copynumber: 4.7 Consensus size: 27
78122580 TTCTGTAAAT
* *
78122590 TGGGGGTACTTTGGTAATTTTAC-AAG
1 TGGGGGTATTTTGGTAATTTTACAAAC
* ** * *
78122616 TCGAGGGTATTTCAGTAATTTCACAAAT
1 T-GGGGGTATTTTGGTAATTTTACAAAC
* *
78122644 TAGAGGTATTTTGGTAATTTTACAAAC
1 TGGGGGTATTTTGGTAATTTTACAAAC
*
78122671 TAGGGGTATTTTGGTAATTTTAC-AAC
1 TGGGGGTATTTTGGTAATTTTACAAAC
**
78122697 TGGGGGTATTTCAGTAATTT
1 TGGGGGTATTTTGGTAATTT
78122717 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
26 21 0.26
27 58 0.71
28 3 0.04
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.40
Consensus pattern (27 bp):
TGGGGGTATTTTGGTAATTTTACAAAC
Done.