Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 273 of 427
Found at i:78927247 original size:30 final size:29
Alignment explanation
Indices: 78927213--78927297 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
78927203 TAACAAAATG
78927213 ACACATAAGAAATTTTAAAATAAATAATAT
1 ACACATAA-AAATTTTAAAATAAATAATAT
* *
78927243 ACACAT-ATAATGTTTAAAATAAA-AAGAT
1 ACACATAAAAAT-TTTAAAATAAATAATAT
* * *
78927271 ATA-A-AAAAATTTCAAAATAAGTAATAT
1 ACACATAAAAATTTTAAAATAAATAATAT
78927298 GTATAATAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
26 9 0.20
27 9 0.20
28 9 0.20
29 12 0.27
30 6 0.13
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.29
Consensus pattern (29 bp):
ACACATAAAAATTTTAAAATAAATAATAT
Found at i:78928737 original size:18 final size:18
Alignment explanation
Indices: 78928710--78928747 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
78928700 TACCTCAATA
* *
78928710 TTATATTCTATAACTAAT
1 TTATACTCTATAAATAAT
78928728 TTATACTCTATAAATAAT
1 TTATACTCTATAAATAAT
78928746 TT
1 TT
78928748 TAAGAAGACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (18 bp):
TTATACTCTATAAATAAT
Found at i:78936029 original size:2 final size:2
Alignment explanation
Indices: 78936022--78936054 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
78936012 AGAAATTAAA
78936022 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
78936055 GCTTTGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78936199 original size:30 final size:31
Alignment explanation
Indices: 78936165--78936254 Score: 173
Period size: 31 Copynumber: 2.9 Consensus size: 31
78936155 TCATATCTTA
78936165 TTTATATTATATTCAAATATTTGTTTTAC-T
1 TTTATATTATATTCAAATATTTGTTTTACTT
78936195 TTTATATTATATTCAAATATTTGTTTTACTT
1 TTTATATTATATTCAAATATTTGTTTTACTT
78936226 TTTATATTATATTCAAATATTTGTTTTAC
1 TTTATATTATATTCAAATATTTGTTTTAC
78936255 ATTTCATCCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 29 0.49
31 30 0.51
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (31 bp):
TTTATATTATATTCAAATATTTGTTTTACTT
Found at i:78937139 original size:19 final size:19
Alignment explanation
Indices: 78937115--78937153 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
78937105 TCACCACAAA
78937115 AAAAAATCA-AAATATTTAT
1 AAAAAATCATAAA-ATTTAT
*
78937134 AAAAAATTATAAAATTTAT
1 AAAAAATCATAAAATTTAT
78937153 A
1 A
78937154 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAAATCATAAAATTTAT
Found at i:78937147 original size:27 final size:27
Alignment explanation
Indices: 78937117--78937198 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
78937107 ACCACAAAAA
*
78937117 AAAATCAAAATATTTATAAAAAATTAT
1 AAAATTAAAATATTTATAAAAAATTAT
* * *
78937144 AAAATTTATATTTTTA-AAAAAATTAT
1 AAAATTAAAATATTTATAAAAAATTAT
* *
78937170 AAAAATTAAAA-AATTCTAAAAAATT-T
1 -AAAATTAAAATATTTATAAAAAATTAT
78937196 AAA
1 AAA
78937199 GAACATATAA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
25 3 0.07
26 13 0.30
27 28 0.64
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (27 bp):
AAAATTAAAATATTTATAAAAAATTAT
Found at i:78937198 original size:9 final size:9
Alignment explanation
Indices: 78937156--78937212 Score: 53
Period size: 10 Copynumber: 6.0 Consensus size: 9
78937146 AATTTATATT
78937156 TTTAAAAAA
1 TTTAAAAAA
*
78937165 ATTATAAAAA
1 TTTA-AAAAA
78937175 -TTAAAAAA
1 TTTAAAAAA
78937183 TTCTAAAAAA
1 TT-TAAAAAA
78937193 TTTAAAGAACA
1 TTTAAA-AA-A
*
78937204 TATAAAAAA
1 TTTAAAAAA
78937213 ATTTTAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 5 0.12
9 12 0.29
10 18 0.44
11 6 0.15
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.28
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:78939268 original size:2 final size:2
Alignment explanation
Indices: 78939261--78939303 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
78939251 TGATGAAGGG
78939261 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78939303 A
1 A
78939304 AAAAAAGAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:78941052 original size:18 final size:17
Alignment explanation
Indices: 78941022--78941055 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78941012 ATAATTTTAC
*
78941022 TTTAAATTTTAATTATT
1 TTTAAATTATAATTATT
78941039 TTTAAATATATAATTAT
1 TTTAAAT-TATAATTAT
78941056 CACAAAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTAAATTATAATTATT
Found at i:78943606 original size:43 final size:43
Alignment explanation
Indices: 78943559--78943653 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
78943549 GCTCGTATGA
* * *
78943559 ATATTTGAAATAGGGCCACACGACCGTGTGTCAAACCATGTGT
1 ATATTTGAAATAGAGCCACACCACCGTGTGCCAAACCATGTGT
* * *
78943602 ATATTCGAAATAGAGCCACACCACTGTGTGCCAAACCGTGTGT
1 ATATTTGAAATAGAGCCACACCACCGTGTGCCAAACCATGTGT
78943645 ATATTTGAA
1 ATATTTGAA
78943654 TTATGGACAC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (43 bp):
ATATTTGAAATAGAGCCACACCACCGTGTGCCAAACCATGTGT
Found at i:78943672 original size:43 final size:43
Alignment explanation
Indices: 78943584--78943708 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 43
78943574 CCACACGACC
* * * * ***
78943584 GTGTGTCAAACCATGTGTATATTCGAAATA-GAGCCACACCACT
1 GTGTGCCAAACCGTGTGTATATTCGAATTATG-GACACATGGCT
*
78943627 GTGTGCCAAACCGTGTGTATATTTGAATTATGGACACATGGCT
1 GTGTGCCAAACCGTGTGTATATTCGAATTATGGACACATGGCT
* *
78943670 GTGTGCCAAACTGTGTGTATATTCGAATTGTGGACACAT
1 GTGTGCCAAACCGTGTGTATATTCGAATTATGGACACAT
78943709 TGCCGTGTCG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
43 69 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (43 bp):
GTGTGCCAAACCGTGTGTATATTCGAATTATGGACACATGGCT
Found at i:78948109 original size:25 final size:25
Alignment explanation
Indices: 78948081--78948133 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
78948071 GATAAATGTG
78948081 ATTGCCTTATAAAATGAGATCTTAC
1 ATTGCCTTATAAAATGAGATCTTAC
78948106 ATTGCCTTATAAAATGAGATCTTAC
1 ATTGCCTTATAAAATGAGATCTTAC
78948131 ATT
1 ATT
78948134 TGTTGCTGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (25 bp):
ATTGCCTTATAAAATGAGATCTTAC
Found at i:78955612 original size:39 final size:40
Alignment explanation
Indices: 78955511--78955612 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
78955501 TATTCGAATG
* *
78955511 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACT
*
78955551 ATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAA-ATCCCGAAGGCATTTGTGCGAG-TGACT
*
78955591 ATAT-CTGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGG
78955613 TACTTGGGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
38 1 0.02
39 14 0.26
40 37 0.69
41 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCGAGTGACT
Found at i:78961601 original size:26 final size:27
Alignment explanation
Indices: 78961564--78961620 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
78961554 GAGTTATGAA
78961564 GAAGAACCGATTTGTATCCTAGCTCGT
1 GAAGAACCGATTTGTATCCTAGCTCGT
78961591 GAAG-ACCGATTTGTATCCTAGCTCGT
1 GAAGAACCGATTTGTATCCTAGCTCGT
78961617 GAAG
1 GAAG
78961621 TGAAAGAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (27 bp):
GAAGAACCGATTTGTATCCTAGCTCGT
Found at i:78963513 original size:40 final size:40
Alignment explanation
Indices: 78963458--78963599 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
78963448 TATTCGAATG
*
78963458 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
78963498 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
78963538 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
78963578 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
78963600 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.14
40 79 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:78974004 original size:40 final size:41
Alignment explanation
Indices: 78973960--78974183 Score: 261
Period size: 40 Copynumber: 5.7 Consensus size: 41
78973950 GCTACTCGTT
*
78973960 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
78974000 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
78974040 CAAATGCCTT-AGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
78974080 CGAATGCCTT--GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
78974119 CGAATGCCTTC-GGATCTTAGTCC-GATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
78974159 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
78974184 CATCATTCGA
Statistics
Matches: 167, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 64 0.38
40 101 0.60
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:78974134 original size:79 final size:79
Alignment explanation
Indices: 78973960--78974183 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 79
78973950 GCTACTCGTT
* *
78973960 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCG
78974024 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * **
78974040 CAAATGCCTTAGGATCTTAGTCCGGATT-TAGTAACTCGCACGAATGCCTT-GGATCTTAGTCCG
1 CAAATGCCTTCGGATCTTAGTCCGG-TTATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
78974103 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * * *
78974119 CGAATGCCTTCGGATCTTAGTCC-GATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGTTATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCCG
78974182 GA
64 GA
78974184 CATCATTCGA
Statistics
Matches: 124, Mismatches: 13, Indels: 15
0.82 0.09 0.10
Matches are distributed among these distances:
77 1 0.01
78 15 0.12
79 64 0.52
80 42 0.34
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGATCTTAGTCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:78978899 original size:40 final size:39
Alignment explanation
Indices: 78978734--78978917 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
78978724 AAATTGATTG
* * *
78978734 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
78978774 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
78978814 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
78978854 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
78978893 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
78978918 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:78978942 original size:80 final size:81
Alignment explanation
Indices: 78978774--78978962 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
78978764 GCTGGAAATT
* * * *
78978774 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
78978839 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
78978855 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
78978918 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
78978934 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
78978963 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:78984901 original size:40 final size:41
Alignment explanation
Indices: 78984864--78985089 Score: 288
Period size: 40 Copynumber: 5.7 Consensus size: 41
78984854 GCTACTCGTT
*
78984864 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
*
78984904 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
78984944 CAAATGCCTT-AGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
78984984 CGAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * *
78985024 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
78985065 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
78985090 CATCATTCGA
Statistics
Matches: 170, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 154 0.91
41 13 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:78993084 original size:16 final size:16
Alignment explanation
Indices: 78993063--78993093 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
78993053 AAAATGAGAT
*
78993063 AAACCATTTCCAAACA
1 AAACCATATCCAAACA
78993079 AAACCATATCCAAAC
1 AAACCATATCCAAAC
78993094 TCTAAAGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (16 bp):
AAACCATATCCAAACA
Found at i:79003270 original size:5 final size:5
Alignment explanation
Indices: 79003260--79003291 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
79003250 TTGTGTGTTC
79003260 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
79003292 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:79003274 original size:9 final size:9
Alignment explanation
Indices: 79003260--79003290 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
79003250 TTGTGTGTTC
79003260 TTTATTTTA
1 TTTATTTTA
79003269 TTTATTTTA
1 TTTATTTTA
79003278 TTTTATTTTA
1 -TTTATTTTA
79003288 TTT
1 TTT
79003291 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:79007724 original size:5 final size:5
Alignment explanation
Indices: 79007714--79007745 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
79007704 TTGTGTGTTC
79007714 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
79007746 TCACATGAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:79007733 original size:14 final size:14
Alignment explanation
Indices: 79007714--79007744 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
79007704 TTGTGTGTTC
79007714 TTTATTTTATTTTA
1 TTTATTTTATTTTA
79007728 TTTATTTTATTTTA
1 TTTATTTTATTTTA
79007742 TTT
1 TTT
79007745 TTCACATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:79010099 original size:27 final size:27
Alignment explanation
Indices: 79010069--79010187 Score: 175
Period size: 27 Copynumber: 4.4 Consensus size: 27
79010059 CCCTAAAATA
79010069 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
79010096 GGTAAAATGACCGTAACACTCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
79010123 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
79010150 GGTAAAATGACCGTGATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
*
79010177 GGCAAAATGAC
1 GGTAAAATGAC
79010188 GAGTAACCCT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:79010415 original size:27 final size:27
Alignment explanation
Indices: 79010324--79010430 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 27
79010314 ATAGAGGAAG
* * *
79010324 TACTG-TACTGGTGACTGTGTCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* *
79010350 CACTGTTACTGGTGGCTATGCCACAAT
1 TACTGTTACTGGTGGCTATGCCACATT
* *
79010377 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACATT
* * ** *
79010404 TACTTTTTCTGGCAGCTATGCTACATT
1 TACTGTTACTGGTGGCTATGCCACATT
79010431 ATTATTACCG
Statistics
Matches: 64, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 4 0.06
27 60 0.94
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTATGCCACATT
Found at i:79010521 original size:21 final size:21
Alignment explanation
Indices: 79010497--79010541 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
79010487 TATTCCCACA
79010497 TGGTGTGTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGGTACGGG
79010518 TGGTGTGTTGGTTGGTACGGG
1 TGGTGTGTTGGTTGGTACGGG
79010539 TGG
1 TGG
79010542 GATGCATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.04, C:0.04, G:0.53, T:0.38
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGTACGGG
Found at i:79010640 original size:32 final size:33
Alignment explanation
Indices: 79010598--79010662 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
79010588 CCCACACTAT
* *
79010598 TACTGTATAGGGCTAAGGCCTAGACTG-TACTG
1 TACTGAATAGGGCTAAGGCCCAGACTGTTACTG
*
79010630 TACTGAATAGGGCTCAGGCCCAGACTGTTACTG
1 TACTGAATAGGGCTAAGGCCCAGACTGTTACTG
79010663 CATGCACTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 24 0.83
33 5 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (33 bp):
TACTGAATAGGGCTAAGGCCCAGACTGTTACTG
Found at i:79011769 original size:17 final size:18
Alignment explanation
Indices: 79011736--79011769 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79011726 GCGTGGTTCA
*
79011736 CTCGTGTGAGTCCACACG
1 CTCGTGTGAGCCCACACG
79011754 CTCGTGTG-GCCCACAC
1 CTCGTGTGAGCCCACAC
79011770 AGCCCAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (18 bp):
CTCGTGTGAGCCCACACG
Found at i:79014024 original size:9 final size:9
Alignment explanation
Indices: 79014010--79014087 Score: 86
Period size: 9 Copynumber: 8.7 Consensus size: 9
79014000 ATAAGTATAA
79014010 AATTAACCG
1 AATTAACCG
79014019 AATTAACCG
1 AATTAACCG
**
79014028 AATTAGTCG
1 AATTAACCG
79014037 AATT-ACTCG
1 AATTAAC-CG
*
79014046 AATTACCCG
1 AATTAACCG
*
79014055 AATTACCCG
1 AATTAACCG
* *
79014064 AATTAGCCA
1 AATTAACCG
79014073 AATTAACCG
1 AATTAACCG
79014082 AATTAA
1 AATTAA
79014088 ACAAATTATT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
9 57 0.98
10 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:79014130 original size:5 final size:6
Alignment explanation
Indices: 79014115--79014155 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
79014105 AATTATATGT
*
79014115 TTTTTA TTTTTA TTTTTA GTTTTAAA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
79014156 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:79014143 original size:20 final size:21
Alignment explanation
Indices: 79014120--79014163 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
79014110 TATGTTTTTT
79014120 ATTTTTATTTTTAGTT-TTAA
1 ATTTTTATTTTTAGTTATTAA
*
79014140 ATTTTTATTTTTATTTATTAA
1 ATTTTTATTTTTAGTTATTAA
79014161 ATT
1 ATT
79014164 ATTTGTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTATTTTTAGTTATTAA
Found at i:79015986 original size:6 final size:6
Alignment explanation
Indices: 79015975--79016036 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
79015965 GTTAGCGAAC
* * * *
79015975 AAATAT AAATAT AAATAC AAATAT AAATATT AAATAT AAGATTT GAATAA
1 AAATAT AAATAT AAATAT AAATAT AAATA-T AAATAT AA-ATAT AAATAT
79016025 ATAATAT AAATA
1 A-AATAT AAATA
79016037 AATATTTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
6 30 0.67
7 15 0.33
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:79015996 original size:12 final size:12
Alignment explanation
Indices: 79015975--79016036 Score: 61
Period size: 13 Copynumber: 4.9 Consensus size: 12
79015965 GTTAGCGAAC
79015975 AAATATAAATAT
1 AAATATAAATAT
*
79015987 AAATACAAATAT
1 AAATATAAATAT
79015999 AAATATTAAATAT
1 AAATA-TAAATAT
* * *
79016012 AAGATTTGAATAA
1 AA-ATATAAATAT
79016025 ATAATATAAATA
1 A-AATATAAATA
79016037 AATATTTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
12 16 0.40
13 21 0.52
14 3 0.08
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (12 bp):
AAATATAAATAT
Found at i:79015996 original size:18 final size:19
Alignment explanation
Indices: 79015973--79016010 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
79015963 ATGTTAGCGA
79015973 ACAAATATAAATA-TAAAT
1 ACAAATATAAATATTAAAT
79015991 ACAAATATAAATATTAAAT
1 ACAAATATAAATATTAAAT
79016010 A
1 A
79016011 TAAGATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (19 bp):
ACAAATATAAATATTAAAT
Found at i:79026559 original size:7 final size:6
Alignment explanation
Indices: 79026538--79026568 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
79026528 TAAATAAAGG
*
79026538 AAAATA AAATTA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA A
79026569 TAAAAGGGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:79031048 original size:2 final size:2
Alignment explanation
Indices: 79031041--79031077 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
79031031 TTATTTAGAT
79031041 TA TA TA TA TA TA TA TA TA TA T- TA TA T- TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
79031078 ATTGATTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 3 0.09
2 29 0.91
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:79031058 original size:12 final size:11
Alignment explanation
Indices: 79031039--79031077 Score: 64
Period size: 10 Copynumber: 3.7 Consensus size: 11
79031029 TTTTATTTAG
79031039 ATTATATATAT
1 ATTATATATAT
79031050 A-TATATATAT
1 ATTATATATAT
79031060 ATTATAT-TAT
1 ATTATATATAT
79031070 ATTATATA
1 ATTATATA
79031078 ATTGATTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 20 0.77
11 6 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATTATATATAT
Found at i:79032324 original size:37 final size:37
Alignment explanation
Indices: 79032274--79032385 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
79032264 ACCTTTAGCT
* * *
79032274 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
79032311 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
79032348 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
79032385 C
1 C
79032386 AGAATATATT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:79032589 original size:48 final size:48
Alignment explanation
Indices: 79032535--79032670 Score: 236
Period size: 48 Copynumber: 2.8 Consensus size: 48
79032525 GCACATCGCC
79032535 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
79032583 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
79032631 TACATATTTCACATTAGCCATTCGGCCTTATCACACATAT
1 TACATATTTCACACTAGCCATTCGGCTTTA-C-CACATAT
79032671 GCATGTTCAC
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
48 76 0.90
49 1 0.01
50 7 0.08
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79032698 original size:47 final size:47
Alignment explanation
Indices: 79032639--79032803 Score: 285
Period size: 47 Copynumber: 3.5 Consensus size: 47
79032629 CATACATATT
*
79032639 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
79032686 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
79032733 TCACATTGGCCATTTGGCCTTATCACACTTATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
79032780 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
79032804 TCATATATAC
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 110 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:79036768 original size:45 final size:45
Alignment explanation
Indices: 79036718--79036821 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 45
79036708 CTACTGTTAT
*
79036718 TGTTACCGTTACTGTTATGGATTC-GACACTTTGTGTGTCAAATAC
1 TGTTACCGTTACTGTTACGGATTCAG-CACTTTGTGTGTCAAATAC
**
79036763 TGTTACCGTTACTGTTACGGATTCAGCACTTTGTGTGTTGAATAC
1 TGTTACCGTTACTGTTACGGATTCAGCACTTTGTGTGTCAAATAC
* *
79036808 TATTACTGTTACTG
1 TGTTACCGTTACTG
79036822 CTACTGCTAC
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.41
Consensus pattern (45 bp):
TGTTACCGTTACTGTTACGGATTCAGCACTTTGTGTGTCAAATAC
Found at i:79044506 original size:84 final size:84
Alignment explanation
Indices: 79044406--79044568 Score: 238
Period size: 84 Copynumber: 1.9 Consensus size: 84
79044396 TCACACGCCT
* * ** *
79044406 ATGTTTATCCTGTAATTTTATTGCCCAATCGTCACACGGCTTGAGGACACACCGGTGTGTCTAGG
1 ATGTTTATCCTGTAATTTTATTGCCCAATCGTCACACAGCCTGAGGACACACCCATGTGTCCAGG
79044471 CCATGTGGTGCACAGGGCC
66 CCATGTGGTGCACAGGGCC
**
79044490 ATGTTTATCGC-GTAATTTTATTGCCCAATCGTCACACAGCCTGAGGACATGCCCATGTGTCCAG
1 ATGTTTATC-CTGTAATTTTATTGCCCAATCGTCACACAGCCTGAGGACACACCCATGTGTCCAG
*
79044554 GCTATGTGGTGCACA
65 GCCATGTGGTGCACA
79044569 CGGTCGTATC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
84 69 0.99
85 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (84 bp):
ATGTTTATCCTGTAATTTTATTGCCCAATCGTCACACAGCCTGAGGACACACCCATGTGTCCAGG
CCATGTGGTGCACAGGGCC
Found at i:79048110 original size:68 final size:66
Alignment explanation
Indices: 79048038--79048209 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
79048028 CATCATGTGT
* * * *
79048038 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
79048101 TGTAG
62 TGTAG
** * *
79048106 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
79048171 AG
65 AG
* * * *
79048173 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
79048210 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:79048143 original size:64 final size:64
Alignment explanation
Indices: 79048062--79048245 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
79048052 AGACATTATG
* * *
79048062 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
79048126 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
79048191 AA
63 AA
* * *
79048193 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
79048246 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79054340 original size:42 final size:42
Alignment explanation
Indices: 79054281--79054444 Score: 204
Period size: 42 Copynumber: 3.9 Consensus size: 42
79054271 TTAAGGTTAT
*
79054281 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
* * * *
79054323 TGAGATTTCGTGTAAGACTATATCTGGGATATGACATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
* * *
79054365 TGAGACTT-CGTGTAAGACCATAGCTGTGCTATTGGCATCAATA
1 TGAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCAATA
** *
79054408 CAAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
79054445 TGGTACGGTA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 70 0.68
43 33 0.32
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:79054424 original size:85 final size:84
Alignment explanation
Indices: 79054281--79054440 Score: 214
Period size: 85 Copynumber: 1.9 Consensus size: 84
79054271 TTAAGGTTAT
* * ** * * *
79054281 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATGAGATTTCGTGTAAGACTATAT
1 TGAGATTACGTGTAAGACCATAGCTGGGATATGGCATCAATACAAGATTACATGTAAGACCATAT
79054346 CTGGGATATGACATCGATA
66 CTGGGATATGACATCGATA
* *
79054365 TGAGACTT-CGTGTAAGACCATAGCTGTGCTATTGGCATCAATACAAGATTACATGTAAGACCAT
1 TGAGA-TTACGTGTAAGACCATAGCTGGGATA-TGGCATCAATACAAGATTACATGTAAGACCAT
79054429 ATCTGGGATATG
64 ATCTGGGATATG
79054441 GCATTGGTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 25 0.38
85 40 0.62
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (84 bp):
TGAGATTACGTGTAAGACCATAGCTGGGATATGGCATCAATACAAGATTACATGTAAGACCATAT
CTGGGATATGACATCGATA
Found at i:79054463 original size:85 final size:84
Alignment explanation
Indices: 79054290--79054463 Score: 188
Period size: 85 Copynumber: 2.1 Consensus size: 84
79054280 TTGAGATTAC
* * ** * * *
79054290 GTGTAAGACCATATCTGGGATATGGCATCTATATGAGATTTCGTGTAAGACTATATCTGGGATAT
1 GTGTAAGACCATAGCTGGGATATGGCATCAATACAAGATTACATGTAAGACCATATCTGGGATAT
* **
79054355 GACATCGATATGAGACTTC
66 GACATCGATACGAGACTGA
* *
79054374 GTGTAAGACCATAGCTGTGCTATTGGCATCAATACAAGATTACATGTAAGACCATATCTGGGATA
1 GTGTAAGACCATAGCTGGGATA-TGGCATCAATACAAGATTACATGTAAGACCATATCTGGGATA
* * *
79054439 TGGCATTGGTACG-GTACTGA
65 TGACATCGATACGAG-ACTGA
79054459 GTGTA
1 GTGTA
79054464 TGAGATGCCC
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
84 20 0.27
85 53 0.73
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (84 bp):
GTGTAAGACCATAGCTGGGATATGGCATCAATACAAGATTACATGTAAGACCATATCTGGGATAT
GACATCGATACGAGACTGA
Found at i:79069262 original size:48 final size:48
Alignment explanation
Indices: 79069149--79069382 Score: 245
Period size: 48 Copynumber: 4.8 Consensus size: 48
79069139 GTAAGATGCA
* * * * **
79069149 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATC-AGTGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATATCGAG-GCC
* * * *
79069199 GATGCCATGTTCCAAACATGGTTTTACACTAGCCCACATGTCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
*
79069247 GATGCCATGTCCCAAACATGGTTTTACACTAGCTCACATATCGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* * * * * * * *
79069295 GATGTCATGTCCCAGACATGGTCTTACACCAACTCTCATATCAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
* *
79069343 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
79069383 ACCCTAGTAT
Statistics
Matches: 156, Mismatches: 27, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
48 127 0.81
49 2 0.01
50 27 0.17
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGCC
Found at i:79080569 original size:29 final size:29
Alignment explanation
Indices: 79080527--79080582 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
79080517 ATACAACAAG
79080527 AAAGAAACTATAAACTGAAGAGAAAATGA
1 AAAGAAACTATAAACTGAAGAGAAAATGA
* *
79080556 AAAGAAGCTGTAAACTGAAGAGAAAAT
1 AAAGAAACTATAAACTGAAGAGAAAAT
79080583 AAACTTCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.59, C:0.07, G:0.20, T:0.14
Consensus pattern (29 bp):
AAAGAAACTATAAACTGAAGAGAAAATGA
Found at i:79083221 original size:40 final size:40
Alignment explanation
Indices: 79083177--79083270 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
79083167 TCTTGTCACT
* **
79083177 TGTCCATATTACTGGCAACTTGTTTGCAATTTTGGTGGCA
1 TGTCCACATTACTGGCAACTTGTTTGCAATCCTGGTGGCA
* * * *
79083217 TGTCCACAATATTGGCAATTTGTTTGCAATCCTGGTGGCT
1 TGTCCACATTACTGGCAACTTGTTTGCAATCCTGGTGGCA
79083257 TGTCCACATTACTG
1 TGTCCACATTACTG
79083271 ATAGTTTATA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.38
Consensus pattern (40 bp):
TGTCCACATTACTGGCAACTTGTTTGCAATCCTGGTGGCA
Found at i:79090783 original size:26 final size:27
Alignment explanation
Indices: 79090760--79090810 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
79090750 TTCCTTTTGA
* *
79090760 ATTTTTTTATTTTCTAA-AATTTTTAT
1 ATTTTTTAATTTTCAAATAATTTTTAT
79090786 ATTTTTTAATTTTCAAATAATTTTT
1 ATTTTTTAATTTTCAAATAATTTTT
79090811 TAGATTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (27 bp):
ATTTTTTAATTTTCAAATAATTTTTAT
Found at i:79093279 original size:19 final size:20
Alignment explanation
Indices: 79093242--79093285 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
79093232 CCTTAAATTG
79093242 TTTTATTTGTAAGATTATTA
1 TTTTATTTGTAAGATTATTA
79093262 TTTTATTATG-AA-ATTATTA
1 TTTTATT-TGTAAGATTATTA
79093281 TTTTA
1 TTTTA
79093286 ATAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 12 0.52
20 9 0.39
21 2 0.09
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (20 bp):
TTTTATTTGTAAGATTATTA
Found at i:79096876 original size:31 final size:32
Alignment explanation
Indices: 79096804--79096884 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 32
79096794 TTCTTTCATT
* * **
79096804 TTTC-TCTTGTGTTTTTACCTCATTCTCTTTG
1 TTTCTTCTTTTGTTTTTAACTCATTCTCTTAC
*
79096835 TTTTTCTCTTTTGTTTTTAACTCATTCT-TTAC
1 TTTCT-TCTTTTGTTTTTAACTCATTCTCTTAC
79096867 TTTCTTCTTTTGTATTTT
1 TTTCTTCTTTTGT-TTTT
79096885 TTTATTTTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
31 11 0.27
32 10 0.24
33 20 0.49
ACGTcount: A:0.09, C:0.19, G:0.06, T:0.67
Consensus pattern (32 bp):
TTTCTTCTTTTGTTTTTAACTCATTCTCTTAC
Found at i:79097768 original size:20 final size:19
Alignment explanation
Indices: 79097732--79097770 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
79097722 TGTAATTAAT
**
79097732 AAAATAAAAAATGCTAAAA
1 AAAATAAAAAAAACTAAAA
79097751 AAAATTAAAAAAAACTAAAA
1 AAAA-TAAAAAAAACTAAAA
79097771 GTAAATGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (19 bp):
AAAATAAAAAAAACTAAAA
Found at i:79103925 original size:28 final size:28
Alignment explanation
Indices: 79103885--79103941 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
79103875 TTGAGCATTT
* * *
79103885 CGAACCCCTTGATCGCTTTTCGACTTCC
1 CGAACCCCTTGATCCCTTCTCAACTTCC
*
79103913 CGAACCTCTTGATCCCTTCTCAACTTCC
1 CGAACCCCTTGATCCCTTCTCAACTTCC
79103941 C
1 C
79103942 AATCACAGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.16, C:0.42, G:0.11, T:0.32
Consensus pattern (28 bp):
CGAACCCCTTGATCCCTTCTCAACTTCC
Found at i:79105684 original size:79 final size:81
Alignment explanation
Indices: 79105583--79105767 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
79105573 ACGACTCGCT
** * *
79105583 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
79105646 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
79105663 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
79105727 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
79105743 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79105768 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:79105767 original size:40 final size:39
Alignment explanation
Indices: 79105576--79105767 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
79105566 GGATATAACG
* ** * *
79105576 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
79105616 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
79105656 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
79105695 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
79105735 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
79105768 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:79112731 original size:40 final size:40
Alignment explanation
Indices: 79112685--79112824 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
79112675 CGGATATAAC
*
79112685 GACTCGCTCAAATGCCTTCGGGAC-GAAGCCC-GGTTATAGT
1 GACTCGCACAAATGCCTTCGGGACTGAA-CCCGGGTT-TAGT
* *
79112725 GACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
* * * * * *
79112765 AACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATT
1 GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
* *
79112804 AACTCGCACGAATGCCTTCGG
1 GACTCGCACAAATGCCTTCGG
79112825 ATCCTAGTCT
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.38
40 48 0.55
41 6 0.07
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
GACTCGCACAAATGCCTTCGGGACTGAACCCGGGTTTAGT
Found at i:79112794 original size:79 final size:81
Alignment explanation
Indices: 79112693--79112877 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
79112683 ACGACTCGCT
** * *
79112693 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
79112756 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* ** *
79112773 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
79112837 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
79112853 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79112878 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:79130247 original size:27 final size:27
Alignment explanation
Indices: 79130217--79130278 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
79130207 TGCAGCACAT
** *
79130217 TGCATGAAATGTATGGGTTGCATGGAA
1 TGCATGAAATACATGGGTTGCATAGAA
**
79130244 TGCATGAAATACATGTTTTGCATAGAA
1 TGCATGAAATACATGGGTTGCATAGAA
79130271 TGCATGAA
1 TGCATGAA
79130279 GTGCATGCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.31
Consensus pattern (27 bp):
TGCATGAAATACATGGGTTGCATAGAA
Found at i:79137698 original size:13 final size:13
Alignment explanation
Indices: 79137682--79137711 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
79137672 TTTTTACCTT
*
79137682 TTAATTTTCTTAG
1 TTAATCTTCTTAG
79137695 TTAATCTTCTTAG
1 TTAATCTTCTTAG
79137708 TTAA
1 TTAA
79137712 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATCTTCTTAG
Found at i:79139870 original size:25 final size:24
Alignment explanation
Indices: 79139841--79139903 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
79139831 ACACCATAGA
* *
79139841 TCGCATGAGCTTCTTGATATTTAGC
1 TCGCATGAGCTTC-CGATACTTAGC
*
79139866 TCGCATGAGCTTCCGCTACTTAGC
1 TCGCATGAGCTTCCGATACTTAGC
*
79139890 TCACATGAGCTTCC
1 TCGCATGAGCTTCC
79139904 TATTATTCAG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 21 0.62
25 13 0.38
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (24 bp):
TCGCATGAGCTTCCGATACTTAGC
Found at i:79140547 original size:25 final size:26
Alignment explanation
Indices: 79140501--79140552 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
79140491 GGTCAATGTT
79140501 GGTAGATAAATGTTTTGTTGAAACTA
1 GGTAGATAAATGTTTTGTTGAAACTA
*
79140527 GGTATATAAAT-TTTTGTTGAAACTA
1 GGTAGATAAATGTTTTGTTGAAACTA
79140552 G
1 G
79140553 CCATTTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.35, C:0.04, G:0.21, T:0.40
Consensus pattern (26 bp):
GGTAGATAAATGTTTTGTTGAAACTA
Found at i:79140561 original size:25 final size:26
Alignment explanation
Indices: 79140506--79140563 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
79140496 ATGTTGGTAG
**
79140506 ATAAATGTTTTGTTGAAACTAGGTAT
1 ATAAATGTTTTGTTGAAACTAGCCAT
79140532 ATAAAT-TTTTGTTGAAACTAGCCAT
1 ATAAATGTTTTGTTGAAACTAGCCAT
*
79140557 TTAAATG
1 ATAAATG
79140564 GCTTGTGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 22 0.79
26 6 0.21
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (26 bp):
ATAAATGTTTTGTTGAAACTAGCCAT
Found at i:79144423 original size:20 final size:19
Alignment explanation
Indices: 79144386--79144431 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
79144376 TAGATTTTTT
*
79144386 TAAAAATTTTATAAATTTG
1 TAAAAATTTTATAAATTTA
79144405 TAAAACATTATTA-AAATTTA
1 TAAAA-ATT-TTATAAATTTA
79144425 TAAAAAT
1 TAAAAAT
79144432 ATATATAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 14 0.58
21 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
TAAAAATTTTATAAATTTA
Found at i:79144449 original size:16 final size:16
Alignment explanation
Indices: 79144428--79144458 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79144418 AAATTTATAA
79144428 AAATATATATAGTTTC
1 AAATATATATAGTTTC
*
79144444 AAATATATATTGTTT
1 AAATATATATAGTTT
79144459 GACATGTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (16 bp):
AAATATATATAGTTTC
Found at i:79147376 original size:11 final size:11
Alignment explanation
Indices: 79147354--79147390 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
79147344 ATTATTATTA
79147354 AATTTAAAAATT
1 AATTT-AAAATT
79147366 AATTTAAAATT
1 AATTTAAAATT
*
79147377 AATTTAAATTT
1 AATTTAAAATT
79147388 AAT
1 AAT
79147391 AGGCACAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTAAAATT
Found at i:79149125 original size:16 final size:16
Alignment explanation
Indices: 79149104--79149134 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79149094 ATAAATTTGA
79149104 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
79149120 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
79149135 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:79154784 original size:55 final size:50
Alignment explanation
Indices: 79154539--79154792 Score: 178
Period size: 53 Copynumber: 4.8 Consensus size: 50
79154529 ACAAGGGTAC
* * *
79154539 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGCCTTG-CATGGTCTTACAT-GTATCCTTGCCTTAG-AA
* * *
79154588 CTTACCATTGCCATGTCTTGATATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGCCTTG-CATGGTCTTACAT-GTATCCTTGCCTTA-GAA
* * *
79154641 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTCCCTTATAGTAA
1 CTTACCAATGCCATGCCTT-GCATGGTCTTACAT-GTATCC-TTGCC-T-TAG-AA
* * *
79154696 CTTATCAATGCCATGTCTTGACAT-GTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATGCCATGCCTTG-CATGGTCTTACATG-TATCCTTGCCTTAG-AA
*
79154748 CCTTACCAATTTCCATGCCTTAGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTT-GCATGGTCTTACAT-GTATCCTT
79154793 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 21, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
49 39 0.23
52 9 0.05
53 46 0.28
54 30 0.18
55 41 0.25
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (50 bp):
CTTACCAATGCCATGCCTTGCATGGTCTTACATGTATCCTTGCCTTAGAA
Found at i:79158050 original size:37 final size:37
Alignment explanation
Indices: 79157998--79158076 Score: 133
Period size: 37 Copynumber: 2.2 Consensus size: 37
79157988 ACTATGCACA
*
79157998 ATTTA-TTATTTCCGTAAATTGTACTTATATACTATT
1 ATTTACTTATTTCCGTAAATTGTACCTATATACTATT
*
79158034 ATTTACTTATTTCCGTAAGTTGTACCTATATACTATT
1 ATTTACTTATTTCCGTAAATTGTACCTATATACTATT
79158071 ATTTAC
1 ATTTAC
79158077 ACTTTTGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 5 0.12
37 35 0.88
ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51
Consensus pattern (37 bp):
ATTTACTTATTTCCGTAAATTGTACCTATATACTATT
Found at i:79161117 original size:68 final size:69
Alignment explanation
Indices: 79161045--79161192 Score: 162
Period size: 67 Copynumber: 2.2 Consensus size: 69
79161035 CATCATGTGT
* * * *
79161045 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTACAAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
79161107 ATGTAG
64 ATGTAG
* ** * *
79161113 ACAAGAGAGCT--ATGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
79161176 GTAG
66 GTAG
79161180 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
79161193 GAGATAAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
64 20 0.30
65 7 0.11
66 5 0.08
67 23 0.35
68 11 0.17
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (69 bp):
ACAAGAGAGCTACAAGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCAT
GTAG
Found at i:79162339 original size:2 final size:2
Alignment explanation
Indices: 79162332--79162358 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
79162322 TCATGACATG
79162332 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
79162359 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:79163123 original size:2 final size:2
Alignment explanation
Indices: 79163116--79163140 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79163106 ATAAGTAATA
79163116 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
79163141 AAGAAAAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79164758 original size:15 final size:14
Alignment explanation
Indices: 79164724--79164768 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 14
79164714 AAATAAATCA
*
79164724 AAATAATAA-AAAT
1 AAATAATAATATAT
79164737 AAA-AATAATATAT
1 AAATAATAATATAT
79164750 GAAATAATAATATAT
1 -AAATAATAATATAT
79164765 AAAT
1 AAAT
79164769 GATATTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 5 0.18
13 6 0.21
14 7 0.25
15 10 0.36
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (14 bp):
AAATAATAATATAT
Found at i:79165097 original size:21 final size:20
Alignment explanation
Indices: 79165072--79165110 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79165062 AAAAAAATCA
79165072 AAACAATATAGATGATATACC
1 AAACAATATAGAT-ATATACC
*
79165093 AAACAATATATATATATA
1 AAACAATATAGATATATA
79165111 TATATATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.28
Consensus pattern (20 bp):
AAACAATATAGATATATACC
Found at i:79166759 original size:177 final size:177
Alignment explanation
Indices: 79166555--79166947 Score: 671
Period size: 177 Copynumber: 2.2 Consensus size: 177
79166545 TTAAATATGC
*
79166555 TCCATAGCCGATACATGGAGATAAGATCTGCAATTTTCAGTCTGCTT-TCTGCAACTTCAGGAAG
1 TCCATAGCCGATACATGGAGATAAGATCTGCAATTTTCAGTCTACTTCT-TGCAACTTCAGGAAG
79166619 ATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATC
65 ATAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATC
*
79166684 TGCTCCATAGCTGATACATAGAGATAAGACTCGCCATTTTCGATCTGA
130 TGCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCGATCTGA
*
79166732 TCCATAGCCGATACATGGATATAAGATCTGCAATTTTCAGTCTACTTCTTGCAACTTCAGGAAGA
1 TCCATAGCCGATACATGGAGATAAGATCTGCAATTTTCAGTCTACTTCTTGCAACTTCAGGAAGA
* * *
79166797 TAAGACTTGTATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGTTGGTGGCTAAAATCT
66 TAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
* *
79166862 GCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGC
131 GCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCGATCTGA
* * *
79166909 TCCATAGCTGATACATGGAGATAAGATCTGTAACTTTCA
1 TCCATAGCCGATACATGGAGATAAGATCTGCAATTTTCA
79166948 CCGATGTCGC
Statistics
Matches: 203, Mismatches: 12, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
177 202 1.00
178 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (177 bp):
TCCATAGCCGATACATGGAGATAAGATCTGCAATTTTCAGTCTACTTCTTGCAACTTCAGGAAGA
TAAGACCTGTATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCT
GCTCCATAGCCGATACATAGAGATAAGACTCGCCATTTTCGATCTGA
Found at i:79166768 original size:45 final size:45
Alignment explanation
Indices: 79166681--79166769 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
79166671 GGTGGCTAAA
* * *
79166681 ATCTGCTCCATAGCTGATACATAGAGATAAGACTCGCCATTTTCG
1 ATCTGATCCATAGCCGATACATAGAGATAAGACTCGCAATTTTCG
* *
79166726 ATCTGATCCATAGCCGATACATGGATATAAGA-TCTGCAATTTTC
1 ATCTGATCCATAGCCGATACATAGAGATAAGACTC-GCAATTTTC
79166770 AGTCTACTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
44 2 0.05
45 36 0.95
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (45 bp):
ATCTGATCCATAGCCGATACATAGAGATAAGACTCGCAATTTTCG
Found at i:79171953 original size:40 final size:39
Alignment explanation
Indices: 79171908--79172114 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 39
79171898 CGGAATACAA
*
79171908 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79171948 CCGGATAGAACGACTTGCACAAATGCCTTC-GGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79171987 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
79172027 CCGGATGTAGTCGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
79172067 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
79172107 CCGGATAT
1 CCGGATAT
79172115 CATTCAATTG
Statistics
Matches: 138, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 35 0.25
40 103 0.75
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79172026 original size:79 final size:81
Alignment explanation
Indices: 79171908--79172113 Score: 240
Period size: 79 Copynumber: 2.6 Consensus size: 81
79171898 CGGAATACAA
* * *
79171908 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAG-A-ACGACTTGCACAAA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGTAGACG-CTAGCACAAA
*
79171971 TGCCTTC-GGTATTAGC
65 TGCCTTCGGGTATTAAC
* * *
79171987 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCGCTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGTAGACGCTAGCACAAAT
*
79172051 GCCTTCGGGTCTTAAC
66 GCCTTCGGGTATTAAC
** * ** * *
79172067 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
79172114 TCATTCAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 59 0.55
80 47 0.44
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGTAGACGCTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:79180101 original size:40 final size:39
Alignment explanation
Indices: 79180056--79180263 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
79180046 CGGAATACAA
*
79180056 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79180096 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
79180136 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
79180176 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
79180216 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
79180256 CCGGATAT
1 CCGGATAT
79180264 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79180196 original size:80 final size:81
Alignment explanation
Indices: 79180056--79180261 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
79180046 CGGAATACAA
* * *
79180056 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
79180120 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
79180136 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
79180199 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
79180216 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
79180262 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:79190447 original size:15 final size:14
Alignment explanation
Indices: 79190413--79190457 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 14
79190403 AAATAAATCA
*
79190413 AAATAATAA-AAAT
1 AAATAATAATATAT
79190426 AAA-AATAATATAT
1 AAATAATAATATAT
79190439 GAAATAATAATATAT
1 -AAATAATAATATAT
79190454 AAAT
1 AAAT
79190458 GATATTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 5 0.18
13 6 0.21
14 7 0.25
15 10 0.36
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (14 bp):
AAATAATAATATAT
Found at i:79190787 original size:21 final size:20
Alignment explanation
Indices: 79190762--79190800 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79190752 AAAAAAATCA
79190762 AAACAATATAGATGATATACC
1 AAACAATATAGAT-ATATACC
*
79190783 AAACAATATATATATATA
1 AAACAATATAGATATATA
79190801 TATGAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.28
Consensus pattern (20 bp):
AAACAATATAGATATATACC
Found at i:79191351 original size:25 final size:27
Alignment explanation
Indices: 79191312--79191362 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
79191302 TTAAAAACCC
*
79191312 TTTGTTTTTTGCTTTT-AAAGAAAACT
1 TTTGTTCTTTGCTTTTAAAAGAAAACT
79191338 TTTGTTCTTT-CTTTTAAAAGAAAAC
1 TTTGTTCTTTGCTTTTAAAAGAAAAC
79191363 CCTTAATGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.51
Consensus pattern (27 bp):
TTTGTTCTTTGCTTTTAAAAGAAAACT
Found at i:79194659 original size:21 final size:21
Alignment explanation
Indices: 79194626--79194665 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79194616 TTAATGAATA
* * *
79194626 ATAGCTCATACTTATCATAAT
1 ATAGATCACACTTAACATAAT
79194647 ATAGATCACACTTAACATA
1 ATAGATCACACTTAACATA
79194666 TAACATATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.20, G:0.05, T:0.33
Consensus pattern (21 bp):
ATAGATCACACTTAACATAAT
Found at i:79206231 original size:10 final size:10
Alignment explanation
Indices: 79206218--79206256 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
79206208 ATATATGAAT
79206218 ATATCATGGC
1 ATATCATGGC
79206228 ATATCATGTGC
1 ATATCATG-GC
79206239 ATATCATGGC
1 ATATCATGGC
79206249 ATATCATG
1 ATATCATG
79206257 TACAGAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:79206244 original size:21 final size:21
Alignment explanation
Indices: 79206218--79206257 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
79206208 ATATATGAAT
79206218 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
79206239 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
79206258 ACAGAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:79206324 original size:25 final size:25
Alignment explanation
Indices: 79206296--79206348 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
79206286 ATAGCATATC
* *
79206296 CCTAAGGGTATAATGGTCATTTTCA
1 CCTAAGGGCAAAATGGTCATTTTCA
*
79206321 CCTAGGGGCAAAATGGTCATTTTCA
1 CCTAAGGGCAAAATGGTCATTTTCA
79206346 CCT
1 CCT
79206349 TATAGGGGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (25 bp):
CCTAAGGGCAAAATGGTCATTTTCA
Found at i:79214099 original size:10 final size:10
Alignment explanation
Indices: 79214086--79214124 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
79214076 ATATATGAAT
79214086 ATATCATGGC
1 ATATCATGGC
79214096 ATATCATGTGC
1 ATATCATG-GC
79214107 ATATCATGGC
1 ATATCATGGC
79214117 ATATCATG
1 ATATCATG
79214125 TACAGAACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:79214112 original size:21 final size:21
Alignment explanation
Indices: 79214086--79214125 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
79214076 ATATATGAAT
79214086 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
79214107 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
79214126 ACAGAACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:79214192 original size:25 final size:25
Alignment explanation
Indices: 79214164--79214214 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
79214154 ATAGCATATC
* *
79214164 CCTAAGGGTATAATGGTCATTTTCA
1 CCTAAGGGCAAAATGGTCATTTTCA
*
79214189 CCTAGGGGCAAAATGGTCATTTTCA
1 CCTAAGGGCAAAATGGTCATTTTCA
79214214 C
1 C
79214215 ATTATAGGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (25 bp):
CCTAAGGGCAAAATGGTCATTTTCA
Found at i:79217626 original size:40 final size:40
Alignment explanation
Indices: 79217578--79217711 Score: 124
Period size: 40 Copynumber: 3.4 Consensus size: 40
79217568 CTTTTCAGGT
* * *
79217578 CAAATCCTACCCGCCTTAAGTTACCGTAGTGAATCAGGAA
1 CAAATCCTACCCACCTTAAATTACCATAGTGAATCAGGAA
* ** *
79217618 TAAATCCTATTCACTTTAAATTACCATAGTGAATCAGGAA
1 CAAATCCTACCCACCTTAAATTACCATAGTGAATCAGGAA
* * * ** **
79217658 CAAATCCTATCCACTTTGAGGTATTATAGTGAATCAGGAA
1 CAAATCCTACCCACCTTAAATTACCATAGTGAATCAGGAA
* *
79217698 CGAATCCTATCCAC
1 CAAATCCTACCCAC
79217712 TTTATATTCT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (40 bp):
CAAATCCTACCCACCTTAAATTACCATAGTGAATCAGGAA
Found at i:79217712 original size:40 final size:40
Alignment explanation
Indices: 79217599--79217715 Score: 153
Period size: 40 Copynumber: 2.9 Consensus size: 40
79217589 CGCCTTAAGT
* * * *
79217599 TACCGTAGTGAATCAGGAATAAATCCTATTCACTTTAAAT
1 TACCATAGTGAATCAGGAACAAATCCTATCCACTTTAAAG
* *
79217639 TACCATAGTGAATCAGGAACAAATCCTATCCACTTTGAGG
1 TACCATAGTGAATCAGGAACAAATCCTATCCACTTTAAAG
** *
79217679 TATTATAGTGAATCAGGAACGAATCCTATCCACTTTA
1 TACCATAGTGAATCAGGAACAAATCCTATCCACTTTA
79217716 TATTCTCGAG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (40 bp):
TACCATAGTGAATCAGGAACAAATCCTATCCACTTTAAAG
Found at i:79219658 original size:29 final size:30
Alignment explanation
Indices: 79219601--79219668 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
79219591 CACCCTTAAA
**
79219601 ATATTTACACTATTGGCCCTTCAACTTTTC
1 ATATTTACACTATTAACCCTTCAACTTTTC
* *
79219631 ATATTTACACT-TTAACCCTTCAAGTTTTG
1 ATATTTACACTATTAACCCTTCAACTTTTC
79219660 AGTATTTAC
1 A-TATTTAC
79219669 TCGTAGGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (30 bp):
ATATTTACACTATTAACCCTTCAACTTTTC
Found at i:79222841 original size:5 final size:5
Alignment explanation
Indices: 79222833--79222875 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
79222823 AAATAAAAAA
79222833 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TAT
79222876 AGTTGGCATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:79227853 original size:47 final size:49
Alignment explanation
Indices: 79227784--79228153 Score: 202
Period size: 46 Copynumber: 7.8 Consensus size: 49
79227774 TATAATACCG
* * *
79227784 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCATC-CATCAA-GTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGGCCA
* * * * *
79227831 ATGCCATGTCCCGGGCATGGTCTTACATTGACT-ATCGAAATCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCAAGGCCA
* * *
79227880 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATC-CGTGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-A-ATCAAG-GCCA
* * * * * * ** *
79227930 ACGTCATGTCCCAGACATGGCCTTACACTGACACATC--TTGTA-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGGCCA
* * * ** * *
79227976 ATG-CATATCCCAGACAT-GTCTTACATTGGCTTA-CATCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGGCCA
* *** * *
79228022 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGGCCA
* ** *
79228068 ATGCCACGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-AATCAAGGCCA
* * *
79228116 ATG-CATGTCCTAGACAT-GTTTTACACTGGCACA-CAAAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAAT
79228154 AACCTGAATG
Statistics
Matches: 250, Mismatches: 56, Indels: 36
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.00
44 11 0.04
45 18 0.07
46 67 0.27
47 54 0.22
48 29 0.12
49 35 0.14
50 33 0.13
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGGCCA
Found at i:79228022 original size:46 final size:46
Alignment explanation
Indices: 79227874--79228145 Score: 207
Period size: 46 Copynumber: 5.8 Consensus size: 46
79227864 ATCGAAATCA
* *
79227874 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG
1 AGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCT-CG
* * * * * *
79227925 TGTCAACG-T-CATGTCCCAGACATGGCCTTACACT-G-ACACATCTTG
1 AGGC--CGATGCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG
* *
79227970 TA-GCCGATGCATATCCCAGACATGTCTTACATTGGCT-TACATCTCG
1 -AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCG
* * *
79228016 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCG
* * *
79228062 ATGCCGATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-G
1 AGGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCG
* * *
79228110 TGGCCGATGCATGTCCTAGACATGTTTTACACTGGC
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGC
79228146 ACACAAATAA
Statistics
Matches: 177, Mismatches: 31, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
43 2 0.01
44 9 0.05
45 17 0.10
46 67 0.38
47 26 0.15
48 25 0.14
49 2 0.01
50 24 0.14
51 2 0.01
52 1 0.01
53 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCG
Found at i:79228116 original size:140 final size:141
Alignment explanation
Indices: 79227874--79228145 Score: 327
Period size: 140 Copynumber: 1.9 Consensus size: 141
79227864 ATCGAAATCA
** * * *
79227874 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGTCAACGTCATGT
1 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACATATCAATGCCAACGCCACGT
*
79227939 CCCAGACATGGCCTTACACTGACACATCTTGTAGCCGATGCATATCCCAGACATGTCTTACATTG
65 CCCAGACATGGCCTTACACTGACACATCTTGTAGCCGATGCATATCCCAGACATGTCTTACACTG
79228004 GCTTACATCTCG
130 GCTTACATCTCG
* * * *
79228016 AGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGCCGATGCCACGTC
1 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCAACGCCACGTC
* * * * * * *
79228078 CCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCCGATGCATGTCCTAGACATGTTTTACAC
66 CCAGACATGGCCTTACACTGACACATC-T--TGTAGCCGATGCATATCCCAGACATGTCTTACAC
79228142 TGGC
128 TGGC
79228146 ACACAAATAA
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
137 2 0.02
138 36 0.33
140 49 0.45
141 14 0.13
142 9 0.08
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (141 bp):
AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCAACGCCACGTC
CCAGACATGGCCTTACACTGACACATCTTGTAGCCGATGCATATCCCAGACATGTCTTACACTGG
CTTACATCTCG
Found at i:79229840 original size:25 final size:25
Alignment explanation
Indices: 79229795--79229843 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
79229785 TGGTTGACAC
* * *
79229795 GGCCTTGAACATGGGCGTGTTACAT
1 GGCCTTGAACACGAGCATGTTACAT
79229820 GGCCTTGAACACGAGCATGTTACA
1 GGCCTTGAACACGAGCATGTTACA
79229844 CGTCCATGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (25 bp):
GGCCTTGAACACGAGCATGTTACAT
Found at i:79232044 original size:40 final size:39
Alignment explanation
Indices: 79231879--79232062 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
79231869 AAATTGAATG
* * *
79231879 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
79231919 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
79231959 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
79231999 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
79232038 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79232063 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:79232087 original size:80 final size:81
Alignment explanation
Indices: 79231919--79232107 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
79231909 GCTGGAAATT
* * * *
79231919 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
79231984 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
79232000 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
79232063 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
79232079 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
79232108 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:79240164 original size:40 final size:39
Alignment explanation
Indices: 79239999--79240182 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
79239989 AAATTGAATG
* * *
79239999 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
79240039 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
79240079 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
79240119 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
79240158 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
79240183 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:79240207 original size:80 final size:81
Alignment explanation
Indices: 79240039--79240227 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
79240029 GCTGGAAATT
* * * *
79240039 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
79240104 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
79240120 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
79240183 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
79240199 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
79240228 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:79242632 original size:2 final size:2
Alignment explanation
Indices: 79242625--79242676 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
79242615 TGCAACCGGC
79242625 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79242667 AT AT AT AT AT
1 AT AT AT AT AT
79242677 GGCAGTCCAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79246105 original size:58 final size:58
Alignment explanation
Indices: 79246015--79246130 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
79246005 CTTGAGAGTA
79246015 AACCAAAATGTCATCTATAAATACCACCACAAACTTGTCCAAATACAGGCTAAAAATT
1 AACCAAAATGTCATCTATAAATACCACCACAAACTTGTCCAAATACAGGCTAAAAATT
79246073 AACCAAAATGTCATCTATAAATACCACCACAAACTTGTCCAAATACAGGCTAAAAATT
1 AACCAAAATGTCATCTATAAATACCACCACAAACTTGTCCAAATACAGGCTAAAAATT
79246131 CTGTTCATCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (58 bp):
AACCAAAATGTCATCTATAAATACCACCACAAACTTGTCCAAATACAGGCTAAAAATT
Found at i:79252699 original size:97 final size:99
Alignment explanation
Indices: 79252480--79252764 Score: 380
Period size: 97 Copynumber: 2.9 Consensus size: 99
79252470 TGAGGCCGCA
* * *
79252480 TGTGTAGTACTAAGTGCAGGCTACTA--TCGTACCCGAAAACTGTGATCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGT-GTACCGGATAA-T-TGGTCACGTGTGTAGTACTAA
* * **
79252543 GTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
63 GTGCAGGCTACTACGTGTACCAGATAATTAGGTCACG
79252580 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTACTAAGT-
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTACTAAGTG
* *
79252644 CAGGCTACTACGTGTACCGGATAATT-GGTCATG
66 CAGGCTACTACGTGTACCAGATAATTAGGTCACG
* * * * *
79252677 TGTGTAGTACTAAGTGCGGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGTACTATGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTACTAAGTG
*
79252742 CAGGCTACTATGTGTACCAGATA
66 CAGGCTACTACGTGTACCAGATA
79252765 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
97 65 0.39
98 42 0.25
99 22 0.13
100 27 0.16
101 9 0.05
102 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTACTAAGTG
CAGGCTACTACGTGTACCAGATAATTAGGTCACG
Found at i:79252718 original size:49 final size:49
Alignment explanation
Indices: 79252480--79252764 Score: 369
Period size: 49 Copynumber: 5.8 Consensus size: 49
79252470 TGAGGCCGCA
* * *
79252480 TGTGTAGTACTAAGTGCAGGCTACTA--TCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGT-GTACCGGATAA-T-TGGTCACG
* * * **
79252530 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
79252580 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
79252629 TGTGTAGTACTAAGT-CAGGCTACTACGTGTACCGGATAATTGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * * *
79252677 TGTGTAGTACTAAGTGCGGGCTACTACGTGTACTGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
79252726 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATA
79252765 GCTTTGGCTA
Statistics
Matches: 208, Mismatches: 23, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
48 47 0.23
49 85 0.41
50 69 0.33
51 6 0.03
52 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:79254095 original size:12 final size:12
Alignment explanation
Indices: 79254078--79254104 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
79254068 CGGATAAGGG
79254078 GTGTTACATTTA
1 GTGTTACATTTA
79254090 GTGTTACATTTA
1 GTGTTACATTTA
79254102 GTG
1 GTG
79254105 GTATCAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.48
Consensus pattern (12 bp):
GTGTTACATTTA
Found at i:79258474 original size:49 final size:50
Alignment explanation
Indices: 79258343--79258475 Score: 196
Period size: 50 Copynumber: 2.7 Consensus size: 50
79258333 ATCTATTGTG
**
79258343 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* * *
79258393 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* *
79258443 -GGTCGCATGTGTAGTACTATGTGCAGACTACTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
79258476 TGCGTACCAG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 29 0.39
50 45 0.61
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (50 bp):
AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
Found at i:79265020 original size:9 final size:9
Alignment explanation
Indices: 79265006--79265040 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
79264996 TTTAATAAGT
79265006 TAAATTAAC
1 TAAATTAAC
*
79265015 TAAATTAAT
1 TAAATTAAC
*
79265024 TAAACTAAC
1 TAAATTAAC
79265033 TAAATTAA
1 TAAATTAA
79265041 TTTCTTAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (9 bp):
TAAATTAAC
Found at i:79265032 original size:18 final size:18
Alignment explanation
Indices: 79265005--79265042 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
79264995 ATTTAATAAG
*
79265005 TTAAATTAACTAAATTAA
1 TTAAACTAACTAAATTAA
79265023 TTAAACTAACTAAATTAA
1 TTAAACTAACTAAATTAA
79265041 TT
1 TT
79265043 TCTTAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAACTAACTAAATTAA
Found at i:79265717 original size:15 final size:15
Alignment explanation
Indices: 79265697--79265727 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79265687 TTCATATGTC
79265697 ATGTAATGCCAATGA
1 ATGTAATGCCAATGA
*
79265712 ATGTAATGTCAATGA
1 ATGTAATGCCAATGA
79265727 A
1 A
79265728 GGGACATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (15 bp):
ATGTAATGCCAATGA
Found at i:79266663 original size:17 final size:17
Alignment explanation
Indices: 79266641--79266675 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
79266631 TATTGTATTT
79266641 TCAGTACAATCTAAAAC
1 TCAGTACAATCTAAAAC
79266658 TCAGTACAATCTAAAAC
1 TCAGTACAATCTAAAAC
79266675 T
1 T
79266676 TTTCCAAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.23, G:0.06, T:0.26
Consensus pattern (17 bp):
TCAGTACAATCTAAAAC
Found at i:79267615 original size:7 final size:7
Alignment explanation
Indices: 79267605--79267766 Score: 62
Period size: 7 Copynumber: 23.9 Consensus size: 7
79267595 GTAATTAGAG
79267605 TTTAATA
1 TTTAATA
79267612 TTTAATA
1 TTTAATA
79267619 TTTAA-A
1 TTTAATA
79267625 CTTTAATA
1 -TTTAATA
*
79267633 -CTAATA
1 TTTAATA
79267639 TTT-ATA
1 TTTAATA
*
79267645 GTTGAA-A
1 -TTTAATA
79267652 GTTTAATA
1 -TTTAATA
79267660 TTTAATA
1 TTTAATA
*
79267667 TTTAGTA
1 TTTAATA
*
79267674 -TTAGA-G
1 TTTA-ATA
*
79267680 TTTAAGA
1 TTTAATA
* *
79267687 TTTCATG
1 TTTAATA
*
79267694 TTTGAGTA
1 TTT-AATA
79267702 ---AATA
1 TTTAATA
* *
79267706 TTGAAAA
1 TTTAATA
79267713 TTTAGA-A
1 TTTA-ATA
79267720 TTTAATA
1 TTTAATA
*
79267727 TTTAATG
1 TTTAATA
79267734 TTTAA-A
1 TTTAATA
79267740 TTTTAA-A
1 -TTTAATA
79267747 GTTTAATA
1 -TTTAATA
79267755 TTT-ATA
1 TTTAATA
79267761 TTTAAT
1 TTTAAT
79267767 TATAAATAAA
Statistics
Matches: 117, Mismatches: 20, Indels: 36
0.68 0.12 0.21
Matches are distributed among these distances:
4 3 0.03
6 20 0.17
7 88 0.75
8 6 0.05
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.50
Consensus pattern (7 bp):
TTTAATA
Found at i:79267681 original size:27 final size:27
Alignment explanation
Indices: 79267605--79267689 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
79267595 GTAATTAGAG
* *
79267605 TTTAATATTTAATATTTAAACTTTAATA
1 TTTAATATTT-ATAGTTAAAGTTTAATA
*
79267633 -CTAATATTTATAGTTGAAAGTTTAATA
1 TTTAATATTTATAGTT-AAAGTTTAATA
* *
79267660 TTTAATATTTAGTA-TTAGAGTTTAAGA
1 TTTAATATTTA-TAGTTAAAGTTTAATA
79267687 TTT
1 TTT
79267690 CATGTTTGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 5 0.10
27 30 0.62
28 11 0.23
29 2 0.04
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (27 bp):
TTTAATATTTATAGTTAAAGTTTAATA
Found at i:79269471 original size:265 final size:262
Alignment explanation
Indices: 79268980--79269837 Score: 1053
Period size: 265 Copynumber: 3.2 Consensus size: 262
79268970 TTTATGGAAC
* **
79268980 AATCATTACCCTTAC-GGAGCAACAACAACTAGC-AAAAAGGATTAGAA-TGGTATTTGTAATGA
1 AATCATTACCCTT-CTGGAGCAACAACAACTAGCAAAAAATGATTAGAACAAG-ATTTGTAATGA
* * ** * * *
79269042 TCAACGTGAAGGCATGTATGTTTTGGACTATAAATCATGCTTACACAATATTTGGCCTCAGGAAG
64 TTAACATGAAGGCACATAT-TTTTGGACTATAAATCATGCTTGCACAACATTTGGCCTCAAGAAG
* * * *
79269107 TTATCAATACTTAATTTCACCTGTGGATTTACATTCTTCTTCACTCAAATTTTAGTTGAACGTGT
128 TTATCAATACTTAATTTCACCTGTGTAATTACATTCTTCTTCCCTCAAATTTCAGTTGAACGTGT
* *** * * * *
79269172 GAAAAGAAAAATAAGGTT-CTTTCAGTATTATGTTAGGGGCAAATACGAAAACACACTACATAAA
193 GAAAAGCAAAGGGAGGTTCCTTT-AGTATTATGTTAAGGGCAAATATGTAAACACA-TGCATAAA
79269236 GTATGAG
256 GTATGAG
* * *
79269243 AAATCATTACCCTTCTGGAGTAACAACAACTGGCAAAAAATGATTAAAACAAGATTTGTAATGAT
1 -AATCATTACCCTTCTGGAGCAACAACAACTAGCAAAAAATGATTAGAACAAGATTTGTAATGAT
* * * * * * *
79269308 TGACATGAAGGTACATATTTATTGTACTATAATTCATGCCTGCATAACATTTGGCCTTAAGAAGT
65 TAACATGAAGGCACATATTT-TTGGACTATAAATCATGCTTGCACAACATTTGGCCTCAAGAAGT
* *
79269373 TATCAATACTTAATTTCACCTGTGTAATTACGTTCTTCTTCCCTCAAATTTCGGTTGAACGTGTG
129 TATCAATACTTAATTTCACCTGTGTAATTACATTCTTCTTCCCTCAAATTTCAGTTGAACGTGTG
* *
79269438 AAAAGCAAAGGGAGGTTCCTTTAATAATATGTTAAGGGCAAATATGTAAACACATTGCATAAAGT
194 AAAAGCAAAGGGAGGTTCCTTTAGTATTATGTTAAGGGCAAATATGTAAACACA-TGCATAAAGT
79269503 ATGACG
258 ATGA-G
* * * *
79269509 AATCATTACCCTTCTAGAGCAACAACAACTAGTAAAAAAAGATTAGAACAAGATTTGTAATGATC
1 AATCATTACCCTTCTGGAGCAACAACAACTAGCAAAAAATGATTAGAACAAGATTTGTAATGATT
* * *
79269574 AGCATGAAAGCACATATGTCTTGGACTATAAATCATGCTTGCACAACATTTGGCCTCAAGAAGTT
66 AACATGAAGGCACATAT-TTTTGGACTATAAATCATGCTTGCACAACATTTGGCCTCAAGAAGTT
* * *
79269639 ATCAATACTTAATTTCACCTGTGTAATTACATTCTTCTTCCCACAAATTTCAATTGACCGTGTGA
130 ATCAATACTTAATTTCACCTGTGTAATTACATTCTTCTTCCCTCAAATTTCAGTTGAACGTGTGA
* *
79269704 AAAACAAAGGGAGGTTCCTTCAGTATTATGTTAAAGGG-AAATATGTAAACACATCGCATAAAGT
195 AAAGCAAAGGGAGGTTCCTTTAGTATTATGTT-AAGGGCAAATATGTAAACACAT-GCATAAAGT
*
79269768 ATAAG
258 ATGAG
* * * * * *
79269773 TAATCATCACCCTTATGAAGCAACAACAACTGGCAAAAAAAT-ATTAGAATAGGATTTGTAATGA
1 -AATCATTACCCTTCTGGAGCAACAACAACTAGC-AAAAAATGATTAGAACAAGATTTGTAATGA
79269837 T
64 T
79269838 CAATGTAACA
Statistics
Matches: 510, Mismatches: 73, Indels: 21
0.84 0.12 0.03
Matches are distributed among these distances:
263 1 0.00
264 33 0.06
265 458 0.90
266 18 0.04
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.30
Consensus pattern (262 bp):
AATCATTACCCTTCTGGAGCAACAACAACTAGCAAAAAATGATTAGAACAAGATTTGTAATGATT
AACATGAAGGCACATATTTTTGGACTATAAATCATGCTTGCACAACATTTGGCCTCAAGAAGTTA
TCAATACTTAATTTCACCTGTGTAATTACATTCTTCTTCCCTCAAATTTCAGTTGAACGTGTGAA
AAGCAAAGGGAGGTTCCTTTAGTATTATGTTAAGGGCAAATATGTAAACACATGCATAAAGTATG
AG
Found at i:79270844 original size:60 final size:59
Alignment explanation
Indices: 79270717--79270855 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 59
79270707 TTTAGTGTTA
* *
79270717 ACTGGGCCTTAGCCCATATCAATATTAATCTGGCCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGCCCATAGCCCATTACAGT-ACAGAGTAT
* * * *
79270778 GCTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGCCCATAGCCC-ATTAC-AGTACAGAG-TAT
* *
79270838 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
79270856 TAACACAGTT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
59 3 0.05
60 49 0.74
61 11 0.17
62 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGCCCATAGCCCATTACAGTACAGAGTAT
Found at i:79270891 original size:19 final size:20
Alignment explanation
Indices: 79270848--79270903 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
79270838 ATTGGGCCTT
79270848 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
79270868 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
* *
79270887 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
79270904 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Done.