Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 274 of 427
Found at i:79271516 original size:8 final size:8
Alignment explanation
Indices: 79271503--79271534 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
79271493 TCACAAATGC
79271503 CGGCTTTT
1 CGGCTTTT
79271511 CGGCTTTT
1 CGGCTTTT
79271519 CGGCTTTT
1 CGGCTTTT
79271527 CGGCTTTT
1 CGGCTTTT
79271535 ACCGATCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:79274104 original size:265 final size:265
Alignment explanation
Indices: 79273613--79274186 Score: 726
Period size: 265 Copynumber: 2.2 Consensus size: 265
79273603 GGGCGTTACA
* * *
79273613 ATCAACGTGAAGGCACGTATGTCTTGGACTATAAATCATGCTTGCACAACATTTGGCCTCAAGAA
1 ATCAACATGAAGGCACGTATGTCTTAGACTATAAATCATGCTTACACAACATTTGGCCTCAAGAA
* * * * * *
79273678 CTTATCAATACTTAATTTCACATGTGTAATTACGTTCTTTTTCTTTTAAATTTTGGTTGAATATG
66 CTTATCAATACCTAATTTCACATGTGGAATTACATTCTTTTGC-TTCAAAGTTTGGTTGAATATG
* * * * * * *
79273743 TCAAAAGCAATAGGAGGTTCCCTTAGTATTATGTTAAGGGGAAATATATAAACACACCGCATAAA
130 TCAAAAGCAAAAAGAGGTTCCCTCAGTATTATGTTAAGAGCAAATATATAAACACACCACAAAAA
* * *
79273808 GTATGAGGAATCATCATCCTTATGAAGGAACAACAACTAG-TAAAGAAAGATTAGAAA-AAAATT
195 GTATGAGGAATCATCACCCTTATGAAGGAACAACAACTAGAAAAAAAAAGATTA-AAATAAAATT
79273871 TGTAATG
259 TGTAATG
* * * *
79273878 ATTAACATGAAGGTACGTATGTCTCAGACTATAAATCATGCTTACACAACATTTGGCCTTAAGAA
1 ATCAACATGAAGGCACGTATGTCTTAGACTATAAATCATGCTTACACAACATTTGGCCTCAAGAA
* * * *
79273943 GTTATCAATACCTAATTTCACCTGTGGATTTATATTCATCTTTGC-TCAAAGTTTGGTTGAACT-
66 CTTATCAATACCTAATTTCACATGTGGAATTACATTC-T-TTTGCTTCAAAGTTTGGTTGAA-TA
* * * **
79274006 TGTGAAAAGCAAAAAGAGGTTTCCTCAGTATTATGTTAAGAGCAAATATGTAAACATGCCACAAA
128 TGTCAAAAGCAAAAAGAGGTTCCCTCAGTATTATGTTAAGAGCAAATATATAAACACACCACAAA
* * * *
79274071 AAGTATGATGAATCATTACCCTTAT-AGAGGAACAACAACTAGAAAAAAAAATATTAAAATAAGA
193 AAGTATGAGGAATCATCACCCTTATGA-AGGAACAACAACTAGAAAAAAAAAGATTAAAATAAAA
79274135 TTTGTAATG
257 TTTGTAATG
*
79274144 ATCAACATGAAGGCATGTATGTCTTAGACTATAAATCATGCTT
1 ATCAACATGAAGGCACGTATGTCTTAGACTATAAATCATGCTT
79274187 GCTCAAGAAG
Statistics
Matches: 263, Mismatches: 40, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
264 1 0.00
265 195 0.74
266 63 0.24
267 4 0.02
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (265 bp):
ATCAACATGAAGGCACGTATGTCTTAGACTATAAATCATGCTTACACAACATTTGGCCTCAAGAA
CTTATCAATACCTAATTTCACATGTGGAATTACATTCTTTTGCTTCAAAGTTTGGTTGAATATGT
CAAAAGCAAAAAGAGGTTCCCTCAGTATTATGTTAAGAGCAAATATATAAACACACCACAAAAAG
TATGAGGAATCATCACCCTTATGAAGGAACAACAACTAGAAAAAAAAAGATTAAAATAAAATTTG
TAATG
Found at i:79274926 original size:2 final size:2
Alignment explanation
Indices: 79274919--79274943 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79274909 TGCTTTAAAA
79274919 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
79274944 AGACATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:79275259 original size:24 final size:24
Alignment explanation
Indices: 79275227--79275278 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
79275217 ATTTAATTAG
*
79275227 ACATAGTTAAGTGTATAGCTTTCC
1 ACATAGTTAAGTGCATAGCTTTCC
79275251 ACATAGTTAAGTGCATAGCTTTCC
1 ACATAGTTAAGTGCATAGCTTTCC
79275275 ACAT
1 ACAT
79275279 TTTTCCATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (24 bp):
ACATAGTTAAGTGCATAGCTTTCC
Found at i:79277864 original size:27 final size:27
Alignment explanation
Indices: 79277826--79277907 Score: 137
Period size: 27 Copynumber: 3.0 Consensus size: 27
79277816 CGAACCAAGA
79277826 AATAGAAAATAGAATGAATAAGAACAT
1 AATAGAAAATAGAATGAATAAGAACAT
*
79277853 AATAGAAAATAGAATGAATAAGAATAT
1 AATAGAAAATAGAATGAATAAGAACAT
* *
79277880 AATAAAAAATACAATGAATAAGAACAT
1 AATAGAAAATAGAATGAATAAGAACAT
79277907 A
1 A
79277908 CTTAAATTGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (27 bp):
AATAGAAAATAGAATGAATAAGAACAT
Found at i:79278019 original size:50 final size:50
Alignment explanation
Indices: 79277965--79278060 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
79277955 GACAAATAAA
* * *
79277965 TACAAGAAAGAAGTAAAAACTATCAAGCCATGGACATAATGATAAAAAAT
1 TACAAGAAAGAAGTAAAAACTATAAAACCATGAACATAATGATAAAAAAT
*
79278015 TACAAGAAAGACGTAAAAACTATAAAACCATGAACATAATGATAAA
1 TACAAGAAAGAAGTAAAAACTATAAAACCATGAACATAATGATAAA
79278061 TAAGGCCCTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.57, C:0.12, G:0.12, T:0.18
Consensus pattern (50 bp):
TACAAGAAAGAAGTAAAAACTATAAAACCATGAACATAATGATAAAAAAT
Found at i:79278810 original size:2 final size:2
Alignment explanation
Indices: 79278803--79278832 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
79278793 ATAAAAATAC
79278803 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79278833 GCATATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79278857 original size:3 final size:3
Alignment explanation
Indices: 79278851--79278879 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
79278841 TAAAAGTATG
79278851 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
79278880 TCTACAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:79279018 original size:31 final size:31
Alignment explanation
Indices: 79278960--79279018 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
79278950 TAAAATAATG
*
79278960 ATATGTACAAAATATATATATATATATATAC
1 ATATGTACAAAATATATACATATATATATAC
79278991 ATATGTACATAAA-ATATACACTA-ATATA
1 ATATGTACA-AAATATATACA-TATATATA
79279019 ATAATAGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (31 bp):
ATATGTACAAAATATATACATATATATATAC
Found at i:79279143 original size:33 final size:33
Alignment explanation
Indices: 79279081--79279143 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
79279071 ACACAATATG
* * *
79279081 GTATTTAAAATATATATATATGTATATATAATA
1 GTATTTAAAATATATACATAAGTAAATATAATA
79279114 GTATTTAAGAATATATACATAAG-AAATATA
1 GTATTTAA-AATATATACATAAGTAAATATA
79279144 TAACTAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 14 0.54
34 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (33 bp):
GTATTTAAAATATATACATAAGTAAATATAATA
Found at i:79279697 original size:19 final size:19
Alignment explanation
Indices: 79279669--79279732 Score: 55
Period size: 19 Copynumber: 3.6 Consensus size: 19
79279659 GTTTTTTTAT
*
79279669 TTTTTATTTTTTGGTTAGG
1 TTTTTCTTTTTTGGTTAGG
* *
79279688 TTTTTCTTTTTT-CTT--C
1 TTTTTCTTTTTTGGTTAGG
**
79279704 TTTTT-TTTTGGGGTTAGG
1 TTTTTCTTTTTTGGTTAGG
79279722 TTTTTCTTTTT
1 TTTTTCTTTTT
79279733 CCTTTTTTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
15 4 0.12
16 7 0.21
18 7 0.21
19 15 0.45
ACGTcount: A:0.05, C:0.06, G:0.16, T:0.73
Consensus pattern (19 bp):
TTTTTCTTTTTTGGTTAGG
Found at i:79279760 original size:34 final size:33
Alignment explanation
Indices: 79279668--79279759 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
79279658 GGTTTTTTTA
*
79279668 TTTTTTATTTTTT-GGTTAGGTTTTTCTTTTTTC
1 TTTTTT-TTTTTTGGGTTAGGTTTTTCTTTTTCC
*
79279701 TTCTTTTTTTTTGGGGTTAGGTTTTTCTTTTTCC
1 TT-TTTTTTTTTTGGGTTAGGTTTTTCTTTTTCC
79279735 TTTTTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTTTTGGGTTAGGTTTTT
79279760 TTAGGAGGGG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
33 29 0.54
34 25 0.46
ACGTcount: A:0.04, C:0.07, G:0.16, T:0.73
Consensus pattern (33 bp):
TTTTTTTTTTTTGGGTTAGGTTTTTCTTTTTCC
Found at i:79281554 original size:19 final size:19
Alignment explanation
Indices: 79281530--79281571 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
79281520 TTGAACTTGA
* * *
79281530 AAATTGGATCTGAGATCGT
1 AAATTGGACCCGAGATCAT
79281549 AAATTGGACCCGAGATCAT
1 AAATTGGACCCGAGATCAT
79281568 AAAT
1 AAAT
79281572 GGGGTCCAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (19 bp):
AAATTGGACCCGAGATCAT
Found at i:79281979 original size:16 final size:18
Alignment explanation
Indices: 79281931--79281981 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
79281921 AAGAGTACTA
79281931 TATTAATTTAATATTAAAG
1 TATT-ATTTAATATTAAAG
79281950 TGATTATCTTAATATTAAA-
1 T-ATTAT-TTAATATTAAAG
79281969 T-TTATTTAATATT
1 TATTATTTAATATT
79281982 TATCTTATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.27
17 4 0.13
19 4 0.13
20 14 0.47
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (18 bp):
TATTATTTAATATTAAAG
Found at i:79282021 original size:71 final size:68
Alignment explanation
Indices: 79281890--79282026 Score: 179
Period size: 71 Copynumber: 2.0 Consensus size: 68
79281880 TTTAATAGAT
* *
79281890 TTAATATTAAATTAAATTTAATATTTATCTTAAGAGTACTATATTAATTTAATATTAAAGTGATT
1 TTAATATTAAATTAAATTTAATATTTATCTTAAGAGTAATATATTAATTTAATAATAAAGTGATT
79281955 ATC
66 ATC
* *
79281958 TTAATATTAAATT-TATTTAATATTTATCTTATAGA-TAAATATTCTTTTAATTTAATAATAAAG
1 TTAATATTAAATTAAATTTAATATTTATCTTA-AGAGT-AATA---TATTAATTTAATAATAAAG
79282021 TGATTA
61 TGATTA
79282027 AATTTAACCA
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
67 18 0.30
68 19 0.32
71 23 0.38
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (68 bp):
TTAATATTAAATTAAATTTAATATTTATCTTAAGAGTAATATATTAATTTAATAATAAAGTGATT
ATC
Found at i:79286896 original size:50 final size:50
Alignment explanation
Indices: 79286819--79286915 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 50
79286809 CATAAGCATG
** * * *
79286819 TGTCCAGGCTGTGTAACTTACTTTTTTGGCTTTGGGGTCACACGGGCGTA
1 TGTCCAGGCCATGTAACTCACTTTTTTGGCTTTAGGGCCACACGGGCGTA
79286869 TGTCCAGGCCATGTAACTCA-TTGTTTTGGCTTTAGGGCCACACGGGC
1 TGTCCAGGCCATGTAACTCACTT-TTTTGGCTTTAGGGCCACACGGGC
79286916 CAGGGACACG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
49 2 0.05
50 39 0.95
ACGTcount: A:0.15, C:0.23, G:0.29, T:0.33
Consensus pattern (50 bp):
TGTCCAGGCCATGTAACTCACTTTTTTGGCTTTAGGGCCACACGGGCGTA
Found at i:79286961 original size:113 final size:112
Alignment explanation
Indices: 79286763--79286973 Score: 271
Period size: 113 Copynumber: 1.9 Consensus size: 112
79286753 CGTATGGCAA
* * * *
79286763 GCCATGTAACTCACTGTATTGGCTTTAGGGTCTCACGGGCCAAGGACATAAGCATGTGTCCAGGC
1 GCCATGTAACTCACTGTATTGGCTTTAGGGCCACACGGGCCAAGGACAGAAG-ATGTGTCCAGAC
* * * *
79286828 TGTGTAACTTACTTTTTTGGCTTTGGGGTCACACGGGCGTATGTCCAG
65 TGTGTAACTCACTGTTTTGGCTTTAGAGTCACACGGGCGTATGTCCAG
* * * *
79286876 GCCATGTAACTCATTGTTTTGGCTTTAGGGCCACACGGGCCAGGGACACGGATG-TGTGTCCAGA
1 GCCATGTAACTCACTGTATTGGCTTTAGGGCCACACGGGCCAAGGACA--GAAGATGTGTCCAGA
*
79286940 TTGTGTAACTCACTGTTTTGGCTTTAGAGTCACA
64 CTGTGTAACTCACTGTTTTGGCTTTAGAGTCACA
79286974 TGACTCGAGC
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
113 81 0.98
115 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (112 bp):
GCCATGTAACTCACTGTATTGGCTTTAGGGCCACACGGGCCAAGGACAGAAGATGTGTCCAGACT
GTGTAACTCACTGTTTTGGCTTTAGAGTCACACGGGCGTATGTCCAG
Found at i:79288133 original size:20 final size:20
Alignment explanation
Indices: 79288108--79288166 Score: 118
Period size: 20 Copynumber: 3.0 Consensus size: 20
79288098 AAATACTTCG
79288108 GATTAATCGACTACATTTCA
1 GATTAATCGACTACATTTCA
79288128 GATTAATCGACTACATTTCA
1 GATTAATCGACTACATTTCA
79288148 GATTAATCGACTACATTTC
1 GATTAATCGACTACATTTC
79288167 TACTTTTATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
GATTAATCGACTACATTTCA
Found at i:79288451 original size:29 final size:30
Alignment explanation
Indices: 79288408--79288487 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
79288398 TAGCTTCGCC
**
79288408 TATCAAATTATGAAAAGGGATGGTGACAAA
1 TATCAAACAATGAAAAGGGATGGTGACAAA
* * *
79288438 TATC-AACAATGAAAAGAGATGGTGACGAC
1 TATCAAACAATGAAAAGGGATGGTGACAAA
*
79288467 TATCAAATAATGAAAAGGGAT
1 TATCAAACAATGAAAAGGGAT
79288488 AGCTTCGGCT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 24 0.57
30 18 0.43
ACGTcount: A:0.47, C:0.09, G:0.23, T:0.21
Consensus pattern (30 bp):
TATCAAACAATGAAAAGGGATGGTGACAAA
Found at i:79288470 original size:89 final size:89
Alignment explanation
Indices: 79288307--79288500 Score: 219
Period size: 89 Copynumber: 2.2 Consensus size: 89
79288297 TAATGAAAGG
* * * * * *
79288307 GATAGCCTCGACTATCAAATTGTGAAAAGGGATGGTGACGACCATAAACAATGGAAAGGGATAGC
1 GATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGACAAACATAAACAATGAAAAGAGATAGC
* * *
79288372 TTCGGCTATCGAATAATCAAAACA
66 TACGACTATCAAATAATCAAAACA
* * * *
79288396 GATAGCTTCGCCTATCAAATTATGAAAAGGGATGGTGACAAATATCAACAATGAAAAGAGAT-GG
1 GATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGACAAACATAAACAATGAAAAGAGATAGC
* **
79288460 TGACGACTATCAAATAATGAAAAGG
66 T-ACGACTATCAAATAATCAAAACA
*
79288485 GATAGCTTCGGCTATC
1 GATAGCTTCGACTATC
79288501 GAGCTAGGAA
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
88 2 0.02
89 85 0.98
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (89 bp):
GATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGACAAACATAAACAATGAAAAGAGATAGC
TACGACTATCAAATAATCAAAACA
Found at i:79288500 original size:30 final size:30
Alignment explanation
Indices: 79288291--79288500 Score: 126
Period size: 30 Copynumber: 7.1 Consensus size: 30
79288281 ATCAACGATC
* *
79288291 ATCAACTAATG-AAAGGGATAGCCTCGACT
1 ATCAAATAATGAAAAGGGATAGCTTCGACT
** * * *
79288320 ATCAAATTGTGAAAAGGGAT-GGTGACGACC
1 ATCAAATAATGAAAAGGGATAGCT-TCGACT
* * *
79288350 AT-AAACAATGGAAAGGGATAGCTTCGGCT
1 ATCAAATAATGAAAAGGGATAGCTTCGACT
* * ** *
79288379 ATCGAATAATCAAAACAGATAGCTTCGCCT
1 ATCAAATAATGAAAAGGGATAGCTTCGACT
* * * * *
79288409 ATCAAATTATGAAAAGGGAT-GGTGACAAAT
1 ATCAAATAATGAAAAGGGATAGCT-TCGACT
* * * *
79288439 ATC-AACAATGAAAAGAGAT-GGTGACGACT
1 ATCAAATAATGAAAAGGGATAGCT-TCGACT
*
79288468 ATCAAATAATGAAAAGGGATAGCTTCGGCT
1 ATCAAATAATGAAAAGGGATAGCTTCGACT
79288498 ATC
1 ATC
79288501 GAGCTAGGAA
Statistics
Matches: 132, Mismatches: 42, Indels: 13
0.71 0.22 0.07
Matches are distributed among these distances:
29 53 0.40
30 77 0.58
31 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (30 bp):
ATCAAATAATGAAAAGGGATAGCTTCGACT
Found at i:79292118 original size:7 final size:7
Alignment explanation
Indices: 79292106--79292131 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
79292096 TAACACGCCA
79292106 CTAAACC
1 CTAAACC
79292113 CTAAACC
1 CTAAACC
79292120 CTAAACC
1 CTAAACC
79292127 CTAAA
1 CTAAA
79292132 AGATTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:79292637 original size:14 final size:14
Alignment explanation
Indices: 79292618--79292654 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
79292608 AGAATAAATA
79292618 ATATATATATATGG
1 ATATATATATATGG
*
79292632 ATATATATATATTG
1 ATATATATATATGG
79292646 ATATATATA
1 ATATATATA
79292655 GATATTAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (14 bp):
ATATATATATATGG
Found at i:79292660 original size:16 final size:15
Alignment explanation
Indices: 79292618--79292660 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
79292608 AGAATAAATA
*
79292618 ATATATAT-ATATGG
1 ATATATATAATATTG
79292632 ATATATAT-ATATTG
1 ATATATATAATATTG
79292646 ATATATATAGATATT
1 ATATATATA-ATATT
79292661 AATGTAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 21 0.81
16 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (15 bp):
ATATATATAATATTG
Found at i:79292925 original size:3 final size:3
Alignment explanation
Indices: 79292917--79292942 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
79292907 ATTAATAGGA
79292917 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
79292943 AAGAGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:79297025 original size:274 final size:278
Alignment explanation
Indices: 79296487--79297618 Score: 1859
Period size: 274 Copynumber: 4.0 Consensus size: 278
79296477 CTAACCTTAT
*
79296487 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
79296552 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGTCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
79296617 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATT
*
79296682 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTTAAATTACTATT
184 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATT
79296747 TTTTTATATTAATAATGTTTGATTTTAATA
249 TTTTTATATTAATAATGTTTGATTTTAATA
*
79296777 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGTT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
79296842 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
79296907 AAAGACTTGAAAAAAGTTCTATTGAGCTCATTTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
*
79296969 ATAAAAATTAAACTACGATTC-TTTTTTATATTATTATATTTAAATTACTATTTTTTTATATTAA
196 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAA
79297033 TAATGTTTGATTTTAATA
261 TAATGTTTGATTTTAATA
* * *
79297051 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAATCCTGACGGGTTGCCTCATATCGAGTT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
79297116 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
79297181 AAAGACTTGAAAAAAGTTCTATCGAGCTCA-TTAC-TAT-T-CTTAATTTATTTCCAATTTACTT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
79297242 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAA
196 ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAA
79297307 TAATGTTTGATTTTAATA
261 TAATGTTTGATTTTAATA
*
79297325 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
79297390 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
*
79297455 AAAGACTTGAAAAAAATTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTAC----------TTATAT-A-CTTAATTTATT
* *
79297520 TCCAATTTACTTATAAAAATTAAACTACGATTCATTTTTGATATTATTATATTCAAATTACTA-T
184 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATT
*
79297584 TTTTTATATTAATAATGTTTTATTTTAATA
249 TTTTTATATTAATAATGTTTGATTTTAATA
79297614 TTTAA
1 TTTAA
79297619 TATTTTTAAA
Statistics
Matches: 809, Mismatches: 16, Indels: 35
0.94 0.02 0.04
Matches are distributed among these distances:
273 52 0.06
274 433 0.54
275 48 0.06
278 1 0.00
279 3 0.00
286 3 0.00
287 1 0.00
289 35 0.04
290 233 0.29
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.39
Consensus pattern (278 bp):
TTTAAATAATTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTTATATACTTAATTTATTTCCAATTTACTT
ATAAAAATTAAACTACGATTCTTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTAA
TAATGTTTGATTTTAATA
Found at i:79297943 original size:24 final size:24
Alignment explanation
Indices: 79297916--79297983 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
79297906 ATTATTATTG
*
79297916 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
79297940 AAATATTATTC-TCCGTTTTATCAC
1 AAATATTA-TCGTCCGTTTTATCAC
79297964 AAATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
79297984 CCGTTTAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
23 2 0.05
24 37 0.90
25 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:79298317 original size:9 final size:9
Alignment explanation
Indices: 79298305--79298530 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
79298295 TATTTGATAT
*
79298305 CATAATTTA
1 CATAACTTA
79298314 CATAACTTA
1 CATAACTTA
* *
79298323 TATAACATA
1 CATAACTTA
*
79298332 TATAACTTA
1 CATAACTTA
79298341 CATAACTTA
1 CATAACTTA
* *
79298350 TATAACATA
1 CATAACTTA
79298359 CATAACTTA
1 CATAACTTA
* *
79298368 TATAACATA
1 CATAACTTA
79298377 CATAACTTA
1 CATAACTTA
*
79298386 TATAACTTA
1 CATAACTTA
* *
79298395 GATAA-ATA
1 CATAACTTA
*
79298403 TATAACTTA
1 CATAACTTA
79298412 CATAACTTA
1 CATAACTTA
79298421 CATAATACTTA
1 CAT-A-ACTTA
* *
79298432 AATATATTTTATA
1 CATA-A--CT-TA
*
79298445 TCATAATTTA
1 -CATAACTTA
79298455 CATAACTTA
1 CATAACTTA
79298464 CATAACTTA
1 CATAACTTA
* *
79298473 GATAA-ATA
1 CATAACTTA
* *
79298481 TATAATTTA
1 CATAACTTA
*
79298490 CATAA-ATA
1 CATAACTTA
* * *
79298498 TATATCATA
1 CATAACTTA
*
79298507 TCATAAATTA
1 -CATAACTTA
79298517 CATAACTTA
1 CATAACTTA
79298526 CATAA
1 CATAA
79298531 TACTTAAATA
Statistics
Matches: 171, Mismatches: 36, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
8 17 0.10
9 127 0.74
10 11 0.06
11 9 0.05
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:79298327 original size:18 final size:18
Alignment explanation
Indices: 79298305--79298530 Score: 170
Period size: 18 Copynumber: 12.3 Consensus size: 18
79298295 TATTTGATAT
* *
79298305 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
79298323 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
79298341 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
*
79298359 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
79298377 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
79298395 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
79298412 CATAACTTACATAATACTTA
1 CATAACTTATAT-A-ACTTA
* * *
79298432 AATATATTTTATATCATAATTTA
1 CATA-A--CT-TAT-ATAACTTA
*
79298455 CATAACTTACATAACTTA
1 CATAACTTATATAACTTA
* * *
79298473 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
79298490 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
79298507 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
79298526 CATAA
1 CATAA
79298531 TACTTAAATA
Statistics
Matches: 165, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
17 37 0.22
18 93 0.56
19 11 0.07
20 9 0.05
21 1 0.01
22 1 0.01
23 8 0.05
24 3 0.02
25 2 0.01
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:79298591 original size:105 final size:102
Alignment explanation
Indices: 79298400--79298604 Score: 234
Period size: 105 Copynumber: 2.0 Consensus size: 102
79298390 ACTTAGATAA
* * * *
79298400 ATATATAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTACATAACTTAC
1 ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
* * *
79298465 ATAACTTAGATAAATATATAATTTACATAAATATATATC
66 AAAACTTACATAAATACATAA--TACATAAATATATATC
**
79298504 ATATCATAAATTACATAACTTACATAATACTTAAATATATATCATATCATACA-TAAC-TAGTTT
1 ATAT-ATAAATTACATAACTTACATAATACTTAAATATATATCATATCATA-ATTAACATAACTT
* * * *
79298567 ACAAAATTTACTTAACTTACATAATACATAAATCTATA
64 ACAAAACTTACATAA-ATACATAATACATAAATATATA
79298605 GTCGAAAATC
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
103 13 0.15
104 19 0.22
105 52 0.61
106 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (102 bp):
ATATATAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTAACATAACTTAC
AAAACTTACATAAATACATAATACATAAATATATATC
Found at i:79304201 original size:21 final size:21
Alignment explanation
Indices: 79304168--79304218 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
79304158 ACAACTTAGA
*
79304168 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
79304189 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
79304210 GCAGAGGCA
1 GCAGAGGCA
79304219 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:79304518 original size:31 final size:31
Alignment explanation
Indices: 79304472--79304538 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
79304462 TGGTTGTATT
* *
79304472 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
79304503 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
79304534 TTTTA
1 TTTTA
79304539 ATGCAGGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:79304637 original size:43 final size:43
Alignment explanation
Indices: 79304613--79304746 Score: 214
Period size: 43 Copynumber: 3.1 Consensus size: 43
79304603 GTAAAAAAAG
79304613 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
79304656 CGCCGCTAAAAGGCTGGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
** *
79304699 CGCCGCTAAAAGCCTTGACCTTTAGCGGCATTTTTTCCAACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGC-GCTTTTCCCACAAA
79304743 CGCC
1 CGCC
79304747 ACAAATTTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 68 0.82
44 15 0.18
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:79305875 original size:119 final size:119
Alignment explanation
Indices: 79305664--79305903 Score: 480
Period size: 119 Copynumber: 2.0 Consensus size: 119
79305654 ACGAAACACA
79305664 CCACCAATAGTAACATTATGTTGTTGTGATGAGAGTGTGTCGTCCGTATTAAGCTTTGCCCATCC
1 CCACCAATAGTAACATTATGTTGTTGTGATGAGAGTGTGTCGTCCGTATTAAGCTTTGCCCATCC
79305729 ATCTTCAGGCGGATACCATTTATTACAAAGGAAGGTGTTGTACATAAGTCAATC
66 ATCTTCAGGCGGATACCATTTATTACAAAGGAAGGTGTTGTACATAAGTCAATC
79305783 CCACCAATAGTAACATTATGTTGTTGTGATGAGAGTGTGTCGTCCGTATTAAGCTTTGCCCATCC
1 CCACCAATAGTAACATTATGTTGTTGTGATGAGAGTGTGTCGTCCGTATTAAGCTTTGCCCATCC
79305848 ATCTTCAGGCGGATACCATTTATTACAAAGGAAGGTGTTGTACATAAGTCAATC
66 ATCTTCAGGCGGATACCATTTATTACAAAGGAAGGTGTTGTACATAAGTCAATC
79305902 CC
1 CC
79305904 TAAATTACTG
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (119 bp):
CCACCAATAGTAACATTATGTTGTTGTGATGAGAGTGTGTCGTCCGTATTAAGCTTTGCCCATCC
ATCTTCAGGCGGATACCATTTATTACAAAGGAAGGTGTTGTACATAAGTCAATC
Found at i:79306372 original size:21 final size:21
Alignment explanation
Indices: 79306348--79306395 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
79306338 TTTAATCTAA
*
79306348 AATAAATGCTATTATATAATC
1 AATAAATACTATTATATAATC
* * *
79306369 AATAAATATTATTATGTACTC
1 AATAAATACTATTATATAATC
79306390 AATAAA
1 AATAAA
79306396 GTTAGCAGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (21 bp):
AATAAATACTATTATATAATC
Found at i:79306856 original size:3 final size:3
Alignment explanation
Indices: 79306848--79306888 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
79306838 AATTAATCAC
79306848 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
79306889 CTCAATACGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:79315170 original size:69 final size:69
Alignment explanation
Indices: 79315059--79315398 Score: 362
Period size: 69 Copynumber: 4.9 Consensus size: 69
79315049 CAACATTTAT
* * * * *
79315059 GTCATATTAAGGCTCGCAGGCGAAAAGCCACAGCCTTCAACACAGTTAGCGAGAGCAAAGTTCCT
1 GTCATATTAAGGCTCGCAGGTGAAAAGCCACAACCTCCAACACAGTTAGCGAGAACAAAGCTCCT
79315124 AGTA
66 AGTA
* * * * *
79315128 GTCATATTAAGGCTCGCAGGTGAAGAGCCGCAGCTTCCAACACAGTTAGCGAGAGCAAAGCTCCT
1 GTCATATTAAGGCTCGCAGGTGAAAAGCCACAACCTCCAACACAGTTAGCGAGAACAAAGCTCCT
79315193 AG-A
66 AGTA
** * * * *
79315196 TGTCATATTAAGGCTTACAGGAGAAAAGCCACAACCTCTAACACAGTTAGCTAAAACAAAGCTCC
1 -GTCATATTAAGGCTCGCAGGTGAAAAGCCACAACCTCCAACACAGTTAGCGAGAACAAAGCTCC
79315261 TAGCT-
65 TAG-TA
* * * *
79315266 GTCATATTAAGGCTTGCAGGTGAAGAGTCACAACCTCCAACATAGTTAGCGAGAACAAAGCTCCC
1 GTCATATTAAGGCTCGCAGGTGAAAAGCCACAACCTCCAACACAGTTAGCGAGAACAAAGCT-CC
* *
79315331 AACT-
65 TAGTA
* * * * * * **
79315335 GTCACACTAGGGCTTGTAGGTGAAAAACTGCAACCTCCAACACAGTTAGCGAGAACAAAGCTCC
1 GTCATATTAAGGCTCGCAGGTGAAAAGCCACAACCTCCAACACAGTTAGCGAGAACAAAGCTCC
79315399 CAACTGGCAT
Statistics
Matches: 230, Mismatches: 37, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
68 3 0.01
69 224 0.97
70 3 0.01
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.19
Consensus pattern (69 bp):
GTCATATTAAGGCTCGCAGGTGAAAAGCCACAACCTCCAACACAGTTAGCGAGAACAAAGCTCCT
AGTA
Found at i:79315305 original size:138 final size:137
Alignment explanation
Indices: 79315057--79315418 Score: 413
Period size: 138 Copynumber: 2.6 Consensus size: 137
79315047 GACAACATTT
* * * * *
79315057 ATGTCATATTAAGGCTCGCAGGCGAAAAGCCACAGCCT-TCAACACAGTTAGCGAGAGCAAAGTT
1 ATGTCATATTAAGGCTTGCAGGAGAAAAGCCACAACCTCT-AACACAGTTAGCGAGAACAAAGCT
* * * *
79315121 CCTAG-TAGTCATATTAAGGCTCGCAGGTGAAGAGCCGCAGCTTCCAACACAGTTAGCGAGAGCA
65 CCTAGCT-GTCATATTAAGGCTCGCAGGTGAAGAGCCACAACCTCCAACACAGTTAGCGAGAACA
*
79315185 AAGCTCCTA
129 AAGCTCCCA
* * *
79315194 GATGTCATATTAAGGCTTACAGGAGAAAAGCCACAACCTCTAACACAGTTAGCTAAAACAAAGCT
1 -ATGTCATATTAAGGCTTGCAGGAGAAAAGCCACAACCTCTAACACAGTTAGCGAGAACAAAGCT
* * *
79315259 CCTAGCTGTCATATTAAGGCTTGCAGGTGAAGAGTCACAACCTCCAACATAGTTAGCGAGAACAA
65 CCTAGCTGTCATATTAAGGCTCGCAGGTGAAGAGCCACAACCTCCAACACAGTTAGCGAGAACAA
79315324 AGCTCCCA
130 AGCTCCCA
* * * * * * ** *
79315332 ACTGTCACACTAGGGCTTGTAGGTGAAAAACTGCAACCTCCAACACAGTTAGCGAGAACAAAGCT
1 A-TGTCATATTAAGGCTTGCAGGAGAAAAGCCACAACCTCTAACACAGTTAGCGAGAACAAAGCT
* * * *
79315397 CCCAACTGGCATATTAGGGCTC
65 CCTAGCTGTCATATTAAGGCTC
79315419 TCAAGATAAA
Statistics
Matches: 188, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
137 1 0.01
138 185 0.98
139 2 0.01
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (137 bp):
ATGTCATATTAAGGCTTGCAGGAGAAAAGCCACAACCTCTAACACAGTTAGCGAGAACAAAGCTC
CTAGCTGTCATATTAAGGCTCGCAGGTGAAGAGCCACAACCTCCAACACAGTTAGCGAGAACAAA
GCTCCCA
Found at i:79315430 original size:69 final size:69
Alignment explanation
Indices: 79315163--79315444 Score: 239
Period size: 69 Copynumber: 4.1 Consensus size: 69
79315153 AGCCGCAGCT
* * * * * *
79315163 TCCAACACAGTTAGCGAGAGCAAAGCTCCTAGA-TGTCATATTAAGGCTTACAGGAGAAAAGCCA
1 TCCAACACAGTTAGCGAGAACAAAGCTCCCA-ACTGTCATATTAAGGCTTACAAGATAAAAACTA
79315227 CAACC
65 CAACC
* * * * * * * * * *
79315232 TCTAACACAGTTAGCTAAAACAAAGCTCCTAGCTGTCATATTAAGGCTTGC-AGGTGAAGAGTCA
1 TCCAACACAGTTAGCGAGAACAAAGCTCCCAACTGTCATATTAAGGCTTACAAGATAAAAACT-A
79315296 CAACC
65 CAACC
* * * * ** * *
79315301 TCCAACATAGTTAGCGAGAACAAAGCTCCCAACTGTCACACTAGGGCTT-GTAGGTGAAAAACTG
1 TCCAACACAGTTAGCGAGAACAAAGCTCCCAACTGTCATATTAAGGCTTACAAGAT-AAAAACTA
79315365 CAACC
65 CAACC
* * * *
79315370 TCCAACACAGTTAGCGAGAACAAAGCTCCCAACTGGCATATTAGGGCTCT-CAAGATAAAAATTG
1 TCCAACACAGTTAGCGAGAACAAAGCTCCCAACTGTCATATTAAGGCT-TACAAGATAAAAACTA
*
79315434 CAGCC
65 CAACC
79315439 TCCAAC
1 TCCAAC
79315445 CTAATTTGCA
Statistics
Matches: 171, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
68 3 0.02
69 160 0.94
70 8 0.05
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.20
Consensus pattern (69 bp):
TCCAACACAGTTAGCGAGAACAAAGCTCCCAACTGTCATATTAAGGCTTACAAGATAAAAACTAC
AACC
Found at i:79317445 original size:26 final size:26
Alignment explanation
Indices: 79317415--79317465 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
79317405 CGTTGGAAAG
79317415 AACACACGTCCTGCCTCTGTGAAAAA
1 AACACACGTCCTGCCTCTGTGAAAAA
*
79317441 AACACACGTCCTGGCTCTGTGAAAA
1 AACACACGTCCTGCCTCTGTGAAAA
79317466 CTACCTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.18, T:0.20
Consensus pattern (26 bp):
AACACACGTCCTGCCTCTGTGAAAAA
Found at i:79320125 original size:25 final size:26
Alignment explanation
Indices: 79320097--79320149 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
79320087 TATGTCCTAG
* *
79320097 AAAATATCTATAATAATT-TTTTTTA
1 AAAATATCCATAATAATTATTCTTTA
* *
79320122 AAAATTTCCATAATCATTATTCTTTA
1 AAAATATCCATAATAATTATTCTTTA
79320148 AA
1 AA
79320150 CACAAATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.47
Consensus pattern (26 bp):
AAAATATCCATAATAATTATTCTTTA
Found at i:79324419 original size:30 final size:30
Alignment explanation
Indices: 79324375--79324463 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
79324365 CAAAGATAAC
*
79324375 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
79324404 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
79324434 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
79324464 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:79324423 original size:15 final size:14
Alignment explanation
Indices: 79324375--79324457 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
79324365 CAAAGATAAC
*
79324375 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
79324389 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
79324404 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
79324419 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
79324434 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
79324449 AAGAAACCC
1 AAGAAACCC
79324458 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:79324463 original size:15 final size:15
Alignment explanation
Indices: 79324386--79324463 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
79324376 AGAAAACCGA
79324386 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
79324401 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
79324415 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
79324430 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79324446 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79324461 ATA
1 ATA
79324464 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79329092 original size:15 final size:15
Alignment explanation
Indices: 79329072--79329102 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79329062 TTGATTGGTC
*
79329072 ATGAACGTATAGAAA
1 ATGAACGTATACAAA
79329087 ATGAACGTATACAAA
1 ATGAACGTATACAAA
79329102 A
1 A
79329103 AATTGTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.10, G:0.16, T:0.19
Consensus pattern (15 bp):
ATGAACGTATACAAA
Found at i:79330550 original size:21 final size:22
Alignment explanation
Indices: 79330503--79330550 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
79330493 AAAGATTGCT
* *
79330503 TTTTTTTTACTATTTTCTTATTG
1 TTTTTTTTA-TATTTTCTTAATA
*
79330526 TTTTTTTT-TATTTTGTTAATA
1 TTTTTTTTATATTTTCTTAATA
79330547 TTTT
1 TTTT
79330551 CTTGTTGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 14 0.64
23 8 0.36
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (22 bp):
TTTTTTTTATATTTTCTTAATA
Found at i:79330552 original size:32 final size:32
Alignment explanation
Indices: 79330504--79330572 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
79330494 AAGATTGCTT
* * * **
79330504 TTTTTTTACTATTTTCTTATTGTTTTTTTTTA
1 TTTTGTTAATATTTTCTTATTGCTTTTTACTA
*
79330536 TTTTGTTAATATTTTCTTGTTGCTTTTTACTA
1 TTTTGTTAATATTTTCTTATTGCTTTTTACTA
79330568 TTTTG
1 TTTTG
79330573 CTACCATTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.72
Consensus pattern (32 bp):
TTTTGTTAATATTTTCTTATTGCTTTTTACTA
Found at i:79330810 original size:20 final size:21
Alignment explanation
Indices: 79330760--79330812 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
79330750 CATTTATTTT
* *
79330760 TATGTTTTTAGTATTTTTAATG
1 TATGTTTATA-TATTTTTAATA
*
79330782 TAT-TATATATATTTTTAA-A
1 TATGTTTATATATTTTTAATA
79330801 TATGTTTATATA
1 TATGTTTATATA
79330813 AAAATAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 3 0.12
20 16 0.62
21 4 0.15
22 3 0.12
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (21 bp):
TATGTTTATATATTTTTAATA
Found at i:79331663 original size:16 final size:16
Alignment explanation
Indices: 79331644--79331679 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
79331634 AACCTAACCC
*
79331644 AAAAAAAAA-ACAAAG
1 AAAAAAAAAGAAAAAG
79331659 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
79331675 AAAAA
1 AAAAA
79331680 CCTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:79331694 original size:16 final size:15
Alignment explanation
Indices: 79331675--79331709 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
79331665 AAAGAAAAAG
*
79331675 AAAAACCTACCCCAA
1 AAAAACCTAACCCAA
79331690 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
79331705 AAAAA
1 AAAAA
79331710 AAAAGAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:79331710 original size:16 final size:15
Alignment explanation
Indices: 79331675--79331710 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
79331665 AAAGAAAAAG
*
79331675 AAAAACCTACCCCAA
1 AAAAACCTACCCAAA
79331690 AAAAACCTAACCCAAA
1 AAAAACCT-ACCCAAA
79331706 AAAAA
1 AAAAA
79331711 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.64, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTACCCAAA
Found at i:79331721 original size:29 final size:29
Alignment explanation
Indices: 79331688--79331756 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
79331678 AACCTACCCC
79331688 AAAAAAACCTAACCCAAAAAAAAAAAGA-
1 AAAAAAACCTAACCCAAAAAAAAAAAGAT
*** * *
79331716 AGAAAAAAGAAAACCCTAACAAAAAAAGAT
1 A-AAAAAACCTAACCCAAAAAAAAAAAGAT
79331746 AAAAAAACCTA
1 AAAAAAACCTA
79331757 GCCACCTAAC
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
28 1 0.03
29 29 0.94
30 1 0.03
ACGTcount: A:0.72, C:0.16, G:0.06, T:0.06
Consensus pattern (29 bp):
AAAAAAACCTAACCCAAAAAAAAAAAGAT
Found at i:79334310 original size:12 final size:12
Alignment explanation
Indices: 79334290--79334325 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
79334280 ATTCATTTAA
79334290 CATTCATGCATT
1 CATTCATGCATT
*
79334302 CATTTATGCATT
1 CATTCATGCATT
*
79334314 CATTCATTCATT
1 CATTCATGCATT
79334326 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:79341395 original size:77 final size:74
Alignment explanation
Indices: 79341212--79341442 Score: 342
Period size: 77 Copynumber: 3.1 Consensus size: 74
79341202 TAAGCTTTTT
* *
79341212 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCGGGACACGCTG
1 AATTTCT-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
79341277 AGGTAATTTC
65 AGGTAATTTC
* *
79341287 AATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACT
1 AATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT
**
79341350 GAGGTGTTTTC
64 GAGGTAATTTC
79341361 AACTTAT-TTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 AA-TT-TCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
79341425 GAGGTAATTTC
64 GAGGTAATTTC
79341436 AATTTCT
1 AATTTCT
79341443 GTTGCGAGTG
Statistics
Matches: 139, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
72 39 0.28
73 1 0.01
74 25 0.18
75 32 0.23
76 1 0.01
77 41 0.29
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (74 bp):
AATTTCTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
GGTAATTTC
Found at i:79341483 original size:129 final size:135
Alignment explanation
Indices: 79341315--79341589 Score: 391
Period size: 144 Copynumber: 2.0 Consensus size: 135
79341305 TCAACTCATA
* *
79341315 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACTGAGGTGTTTTCAA-C-TT-ATTT-T-TTTC
1 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATCTTTAATTTCTCTTTC
79341375 -AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
66 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
79341439 TTCTG
131 TTCTG
* *
79341444 TTGCGAGTGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
1 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAA--T-C---TTT-AATTT
79341509 CTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
59 CT--CTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
79341574 AATTTCAATTTCTG
122 AATTTCAATTTCTG
79341588 TT
1 TT
79341590 TGTCAAAAAA
Statistics
Matches: 127, Mismatches: 4, Indels: 15
0.87 0.03 0.10
Matches are distributed among these distances:
129 44 0.35
133 1 0.01
137 2 0.02
139 4 0.03
140 1 0.01
143 4 0.03
144 71 0.56
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (135 bp):
TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATCTTTAATTTCTCTTTC
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
TTCTG
Found at i:79341624 original size:75 final size:77
Alignment explanation
Indices: 79341500--79341662 Score: 233
Period size: 75 Copynumber: 2.1 Consensus size: 77
79341490 AATTTCCGTT
*
79341500 TTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GAC
1 TTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC
*
79341564 ACGCTGAGGTAA
66 ACGCCGAGGTAA
* * *
79341576 TTTCAATTTCTG-TTTGTC-AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTCAATTTCTGCCTT-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-C
*
79341639 ACACGCCGAGGTAT
64 ACACGCCGAGGTAA
79341653 TTTCAATTTC
1 TTTCAATTTC
79341663 CATTTTTCAA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
75 42 0.54
76 14 0.18
77 22 0.28
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (77 bp):
TTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC
ACGCCGAGGTAA
Found at i:79341805 original size:75 final size:77
Alignment explanation
Indices: 79341687--79341841 Score: 206
Period size: 77 Copynumber: 2.0 Consensus size: 77
79341677 TGCCTTTCAA
* * *
79341687 AAAAAAATCAACTCATATTGCGAGAGAGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTACGAGAGAGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAA
*
79341751 TTTCTGTTTGTC
66 TTTCCGTTTGTC
* * * *
79341763 AAAAAAATCAACTCGTATTACGAGCG-GCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTACGAGAGAGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCA
*
79341827 ATTTCCGTTTTTC
65 ATTTCCGTTTGTC
79341840 AA
1 AA
79341842 TTTCTGCCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
75 16 0.24
76 23 0.34
77 29 0.43
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTACGAGAGAGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAA
TTTCCGTTTGTC
Found at i:79341990 original size:168 final size:168
Alignment explanation
Indices: 79341444--79342162 Score: 1149
Period size: 169 Copynumber: 4.3 Consensus size: 168
79341434 TCAATTTCTG
*
79341444 TTGCGAGTGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
1 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
79341509 CTGCCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
66 CTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* *
79341573 TAATTTCAATTTCTGTTTGTCAAAAAAGTCAACTCGTA
131 TAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCATA
* *
79341611 TTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTT
1 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
79341676 CTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGAGTGAGTTGAGCCTCAGGACACGCTGAG
66 CTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAG-GTGAGTTGAGCCTCAGGACACGCTGAG
*
79341741 GTAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCGTA
130 GTAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCATA
* * * *
79341780 TTACGAGCGGCGAGTTGAGCCTCAGGTCACATGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
1 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
*
79341845 CTGCCTTTCAAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
66 CTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
79341910 TAATTTCAATTTCTGTTT-TCAAAAAAATCAACTCATA
131 TAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCATA
* * *
79341947 TTGCGAGAGGCGAGTTGAGCCTCAGGTTCAAACGCCAAGGTATTTTCAATTTCCGTTTTTCAATT
1 TTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATT
*
79342012 TCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCT
65 TCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCT
* * *
79342076 GAGCTATTTTCAATTTTTGTCTT-TCAAAAAAATCAACTCATA
127 GAGGTAATTTCAATTTCTGT-TTGTCAAAAAAATCAACTCATA
* * * * *
79342118 TTGCGAAAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTT
1 TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTT
79342163 TTCAATTTAT
Statistics
Matches: 515, Mismatches: 30, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
167 115 0.22
168 158 0.31
169 160 0.31
170 39 0.08
171 43 0.08
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (168 bp):
TTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
CTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTCAATTTCTGTTTGTCAAAAAAATCAACTCATA
Found at i:79341994 original size:77 final size:75
Alignment explanation
Indices: 79341835--79342005 Score: 218
Period size: 74 Copynumber: 2.2 Consensus size: 75
79341825 CAATTTCCGT
* * *
79341835 TTTTCAATTTCTGCCTTTCAAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TTTTCAATTTCTG-TTTTC-AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA
* **
79341900 CACGCTGAGGTA
64 AACGCCAAGGTA
*
79341912 ATTTCAATTTCTGTTTTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTTC
1 TTTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG---
79341976 AAACGCCAAGGTA
63 AAACGCCAAGGTA
*
79341989 TTTTCAATTTCCGTTTT
1 TTTTCAATTTCTGTTTT
79342006 TCAATTTCTG
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
74 41 0.50
76 4 0.05
77 37 0.45
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAAA
CGCCAAGGTA
Found at i:79342165 original size:79 final size:77
Alignment explanation
Indices: 79342002--79342215 Score: 252
Period size: 77 Copynumber: 2.7 Consensus size: 77
79341992 TCAATTTCCG
* * * *
79342002 TTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTTCAATTTATGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGA
*
79342067 TCACACGCTGAGCTA
63 TCACACACTGAGCTA
* *
79342082 -TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCTTCAGATC
1 TTTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATC
*
79342146 ACACACTGAGGTA
65 ACACACTGAGCTA
* * * * *
79342159 TTTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGTGAGATGTGAGTTGAGC
1 -TTTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
79342216 CTCGAGTCAC
Statistics
Matches: 117, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
76 3 0.03
77 49 0.42
78 32 0.27
79 33 0.28
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (77 bp):
TTTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCA
CACACTGAGCTA
Found at i:79342226 original size:78 final size:78
Alignment explanation
Indices: 79342024--79342386 Score: 252
Period size: 77 Copynumber: 4.5 Consensus size: 78
79342014 TGCCTTTCAA
* * *
79342024 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GCTCACACGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGATCACACACTGAGCTATTTTCA
* *
79342088 ATTTTTGTCTTTC
66 ATTTATATCTTTC
* * *
79342101 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCTTC-AGATCACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGATCACACACTGAGCTA--TTTT
*
79342165 CAATTTATATTTTTC
64 CAATTTATATCTTTC
* * * ** *
79342180 -AAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGAG-TCACA-TGTCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGATCACACACT-GAGCTATTTTC
* *
79342242 AAAATCTATTTTTCAGATTCTGTTT
65 ---A---A--TTT-ATA-TCT-TTC
** * * * ***
79342267 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTG-GCTCACGTGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGATCACACACTGAGCTATTTTCA
* * *
79342331 ATTTTTGTTTTTTTTTTC
66 A----T-TTATATCTTTC
79342349 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
79342387 TTTTTAATTT
Statistics
Matches: 227, Mismatches: 36, Indels: 40
0.75 0.12 0.13
Matches are distributed among these distances:
76 5 0.02
77 52 0.23
78 45 0.20
79 19 0.08
82 9 0.04
83 31 0.14
84 6 0.03
85 5 0.02
86 2 0.01
87 3 0.01
88 49 0.22
89 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (78 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGATCACACACTGAGCTATTTTCA
ATTTATATCTTTC
Found at i:79342342 original size:88 final size:82
Alignment explanation
Indices: 79342174--79342560 Score: 204
Period size: 88 Copynumber: 4.5 Consensus size: 82
79342164 TCAATTTATA
* * * *
79342174 TTTTTCAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGAGTCACATGTCGAGGTATT
1 TTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGTCGAGCTATT
79342239 TTCAAAATCTATTTTTCAGATT
65 TTCAAAATCTATTTTT----TT
* *
79342261 CTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTG-GCTCACGTG-CTGAGCT
1 -T-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAG-TCACATGTC-GAGCT
*
79342324 ATTTTC--AAT-TTTTGTTTTT
62 ATTTTCAAAATCTATT-TTTTT
* * ** * **
79342343 TTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTC-TG-CGAG--
1 TTTTTC--AAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGC-CTCGAGTCACATGTCGAGCT
* *
79342404 AGTTGAGTT--GAGTCT-TTTAATTTCT
62 A-TT---TTCAAAATCTATTT--TTT-T
* * * * *
79342429 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATT
1 -TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGTCGAGCTATT
* *
79342494 TTCAAAATCTGCTTTTCAAGTTA
65 TTCAAAATCT-ATTTT----TTT
** *
79342517 AGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
79342561 TGGCTCACGC
Statistics
Matches: 239, Mismatches: 28, Indels: 64
0.72 0.08 0.19
Matches are distributed among these distances:
80 6 0.03
81 3 0.01
82 10 0.04
83 39 0.16
84 40 0.17
85 21 0.09
86 9 0.04
87 16 0.07
88 88 0.37
89 7 0.03
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (82 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCACATGTCGAGCTATTT
TCAAAATCTATTTTTTT
Found at i:79342404 original size:30 final size:30
Alignment explanation
Indices: 79342368--79342429 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
79342358 CAACTCATAT
79342368 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
79342398 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
79342428 TG
1 TG
79342430 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:79342490 original size:255 final size:248
Alignment explanation
Indices: 79341856--79342597 Score: 760
Period size: 255 Copynumber: 3.0 Consensus size: 248
79341846 TGCCTTTCAA
* * * * * *
79341856 AAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--ATTTC
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
* * * * * * *
79341917 AATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCT-CAGGTTCAAAC
66 AATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCA-G-TCACAT
** * ** *** * **
79341980 GCCAAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGC
128 ATCGAGGTATTTTCAAAATCTACTTTTCAAGTTAAG--TTTC---AAAAAATCAACTCATATTGC
*
79342045 GAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAATTTTTG-----TCTTTC
188 GAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTTTGTTTTTTCTTTC
*
79342101 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
* * * * *
79342166 AATTTATATTTTTCAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGCCTCGAGTCACATGTC
66 AATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATC
* ** *
79342231 GAGGTATTTTCAAAATCTATTTTTC-AGATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAG
131 GAGGTATTTTCAAAATCTACTTTTCAAG-TTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGG
* *
79342294 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTTTGTTTTTTTTTTC
194 TGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTTTGTTTTTTCTTTC
* * * * * *
79342349 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAAAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT
* * *
79342413 GAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCA
58 -A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCA
*
79342476 GTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATT
121 GTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATT
*
79342541 GCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTT
186 GCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTTTGTTTTT
79342598 AATGTCTGTT
Statistics
Matches: 424, Mismatches: 49, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
243 66 0.16
245 39 0.09
247 17 0.04
248 43 0.10
249 74 0.17
250 7 0.02
251 3 0.01
252 2 0.00
253 1 0.00
254 6 0.01
255 146 0.34
256 15 0.04
257 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (248 bp):
AAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
AATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATC
GAGGTATTTTCAAAATCTACTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTTTGTTTTTTCTTTC
Found at i:79343261 original size:15 final size:15
Alignment explanation
Indices: 79343243--79343276 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
79343233 AACCTAACCC
*
79343243 AAAAAAAA-ACAAAG
1 AAAAAAAAGAAAAAG
79343257 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
79343272 AAAAA
1 AAAAA
79343277 CCTACCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:79343290 original size:15 final size:15
Alignment explanation
Indices: 79343272--79343306 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
79343262 AAAGAAAAAG
*
79343272 AAAAACCTACCCCAA
1 AAAAACCTAACCCAA
79343287 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
79343302 AAAAA
1 AAAAA
79343307 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:79343317 original size:28 final size:29
Alignment explanation
Indices: 79343285--79343352 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
79343275 AACCTACCCC
79343285 AAAAAAACCTAACCC-AAAAAAAAAAGA-
1 AAAAAAACCTAACCCTAAAAAAAAAAGAT
*** *
79343312 AGAAAAAAGAAAACCCTAACAAAAAAAGAT
1 A-AAAAAACCTAACCCTAAAAAAAAAAGAT
79343342 AAAAAAACCTA
1 AAAAAAACCTA
79343353 GCCACCTAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
27 1 0.03
28 11 0.35
29 18 0.58
30 1 0.03
ACGTcount: A:0.72, C:0.16, G:0.06, T:0.06
Consensus pattern (29 bp):
AAAAAAACCTAACCCTAAAAAAAAAAGAT
Found at i:79344148 original size:2 final size:2
Alignment explanation
Indices: 79344141--79344166 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
79344131 TATTATATGC
79344141 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
79344167 GTATTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79347622 original size:30 final size:30
Alignment explanation
Indices: 79347586--79347646 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
79347576 AAGACTAGGC
79347586 CTACATTCTATCAACAACTCTCAGTCTGTA
1 CTACATTCTATCAACAACTCTCAGTCTGTA
*
79347616 CTACATTCTATCAACAACTCTTAGTCTGTA
1 CTACATTCTATCAACAACTCTCAGTCTGTA
79347646 C
1 C
79347647 ATTCTCTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.34
Consensus pattern (30 bp):
CTACATTCTATCAACAACTCTCAGTCTGTA
Found at i:79352628 original size:32 final size:32
Alignment explanation
Indices: 79352587--79352650 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
79352577 TTGAGAGTTG
79352587 AACACAAGTTTTCGAACTTAATAAAAAATTAT
1 AACACAAGTTTTCGAACTTAATAAAAAATTAT
79352619 AACACAAGTTTTCGAACTTAATAAAAAATTAT
1 AACACAAGTTTTCGAACTTAATAAAAAATTAT
79352651 CTAACAAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (32 bp):
AACACAAGTTTTCGAACTTAATAAAAAATTAT
Found at i:79358229 original size:24 final size:25
Alignment explanation
Indices: 79358197--79358252 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
79358187 CTTACTGTAG
* *
79358197 AAAATATT-AAATTAATT-TTTTATT
1 AAAAAATTAAAATAAATTATTTT-TT
79358221 AAAAAATTAAAATAAATTATTTTTT
1 AAAAAATTAAAATAAATTATTTTTT
79358246 AAAAAAT
1 AAAAAAT
79358253 GAGATATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 7 0.25
25 17 0.61
26 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
AAAAAATTAAAATAAATTATTTTTT
Found at i:79364956 original size:85 final size:84
Alignment explanation
Indices: 79364832--79364993 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 84
79364822 TACTGTACCA
* ** * *
79364832 ATGTCATATCCCATATATGGTCTTACATGTAATCTCATATCGATGCTAATAGCCCAGCTATGGTC
1 ATGTCATATCCCAGATATGGTCTTACATAAAATCTCATATCGATAC-AATAGCCCAGATATGGTC
79364897 TTACACGAAATCTTATATCG
65 TTACACGAAATCTTATATCG
* * *
79364917 ATGTCATATCCTAGATATGGTCTTATA-AAAAGTCTCATATCGATACAATATCCCAGATATGGTC
1 ATGTCATATCCCAGATATGGTCTTACATAAAA-TCTCATATCGATACAATAGCCCAGATATGGTC
*
79364981 TTACACGTAATCT
65 TTACACGAAATCT
79364994 CAGTAACCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
84 30 0.45
85 37 0.55
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (84 bp):
ATGTCATATCCCAGATATGGTCTTACATAAAATCTCATATCGATACAATAGCCCAGATATGGTCT
TACACGAAATCTTATATCG
Found at i:79364957 original size:42 final size:42
Alignment explanation
Indices: 79364832--79364995 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
79364822 TACTGTACCA
* * *
79364832 ATGTCATATCCCATATATGGTCTTACATGTAATCTCATATCG
1 ATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
79364874 ATGCTAATAGCCCAGCTATGGTCTTACACGAAATCTTATATCG
1 ATG-TCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
79364917 ATGTCATATCCTAGATATGGTCTTATA-AAAAGTCTCATATCG
1 ATGTCATATCCCAGATATGGTCTTACACGAAA-TCTCATATCG
* *
79364959 AT-ACAATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGTC-ATATCCCAGATATGGTCTTACACGAAATCTCA
79364996 GTAACCCTAA
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 4 0.04
42 58 0.59
43 37 0.37
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (42 bp):
ATGTCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:79370788 original size:42 final size:42
Alignment explanation
Indices: 79370673--79370836 Score: 175
Period size: 42 Copynumber: 3.9 Consensus size: 42
79370663 TACTATACCA
* * *
79370673 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
79370715 ATGCTAATAGCCTAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * *
79370758 ATGCCATATCCCAAATATGGTCTTATACGAAGTTTCATACCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
79370800 AAGCCATATCCTAGATATGGTTTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
79370837 GTAACCCTAA
Statistics
Matches: 97, Mismatches: 24, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
42 62 0.64
43 35 0.36
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:79374087 original size:23 final size:21
Alignment explanation
Indices: 79374035--79374090 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
79374025 CTGCCTGTAG
79374035 CACGGGTGTGTCCCAAGGTCA
1 CACGGGTGTGTCCCAAGGTCA
79374056 CACGGGTGTGTCCCAAGGTCA
1 CACGGGTGTGTCCCAAGGTCA
79374077 CACGGGTGTGTCCC
1 CACGGGTGTGTCCC
79374091 TTGGACCACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (21 bp):
CACGGGTGTGTCCCAAGGTCA
Found at i:79375775 original size:17 final size:15
Alignment explanation
Indices: 79375753--79375799 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
79375743 TCTTCATAAA
79375753 CATATATCATTCATTT
1 CATATATCA-TCATTT
79375769 CATTATATCAAT-ATTT
1 CA-TATATC-ATCATTT
*
79375785 CATATACCATCATTT
1 CATATATCATCATTT
79375800 TCATGAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 2 0.07
15 9 0.33
16 8 0.30
17 7 0.26
18 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (15 bp):
CATATATCATCATTT
Found at i:79377683 original size:16 final size:16
Alignment explanation
Indices: 79377662--79377716 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
79377652 GTTTGGTTTA
*
79377662 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
79377678 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
79377694 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
79377710 CTGTAAT
1 CTGTAAT
79377717 TAGTAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:79377904 original size:21 final size:21
Alignment explanation
Indices: 79377878--79377917 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
79377868 ATTGTTATTG
*
79377878 TTATTAAATTTAATATAATTA
1 TTATTAAATATAATATAATTA
*
79377899 TTATTAAATATAATTTAAT
1 TTATTAAATATAATATAAT
79377918 AAAATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATTAAATATAATATAATTA
Found at i:79385115 original size:36 final size:36
Alignment explanation
Indices: 79385065--79385137 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
79385055 TAAGTAAAAT
*
79385065 AAATCTCATTAGAGTCGGGAGATATCGCACTATCAC
1 AAATCTCATCAGAGTCGGGAGATATCGCACTATCAC
79385101 AAATCTCATCAGAGTCGGGAGATATCGCACTATCAC
1 AAATCTCATCAGAGTCGGGAGATATCGCACTATCAC
79385137 A
1 A
79385138 GGTTATATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (36 bp):
AAATCTCATCAGAGTCGGGAGATATCGCACTATCAC
Found at i:79389290 original size:46 final size:47
Alignment explanation
Indices: 79389196--79389293 Score: 112
Period size: 46 Copynumber: 2.1 Consensus size: 47
79389186 GTGCCGATGC
* * *
79389196 CATGTCCCAGACTTGGTCTTACACTGACTATCATCTCATAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCAGAGTCAATG
* *
79389243 CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCT-AGAGGTCAATG
1 CATGTCCCAGACATGGTCTTACACTGACTAT-CATCTCAGA-GTCAATG
79389289 CATGT
1 CATGT
79389294 AACACCCCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
45 3 0.07
46 28 0.64
47 13 0.30
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGACTATCATCTCAGAGTCAATG
Found at i:79390365 original size:60 final size:60
Alignment explanation
Indices: 79390245--79390386 Score: 155
Period size: 60 Copynumber: 2.4 Consensus size: 60
79390235 CAGTGTTAAC
* * *
79390245 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTATAGTATCGGAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTAGGCCATAGCCCATTAAAGTATCGGAGTATAT
* *
79390306 TGGGCCTAGCCCATATCAGTATTAATCTAGGCCGTAGCCCTATTACAAGT-T--GAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTAGGCCATAGCCC-ATTA-AAGTATCGGAG-TATAT
* * *
79390366 TGGGTCTTGCCCATATTAATA
1 TGGGCCTAGCCCATATCAATA
79390387 CAGTTGGGCC
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 3 0.04
60 53 0.77
61 10 0.14
62 3 0.04
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATTAATCTAGGCCATAGCCCATTAAAGTATCGGAGTATAT
Found at i:79391508 original size:15 final size:15
Alignment explanation
Indices: 79391488--79391524 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
79391478 AAGAAATAGA
79391488 GGCTTTTGGGATTTC
1 GGCTTTTGGGATTTC
79391503 GGCTTTTGGGATTTC
1 GGCTTTTGGGATTTC
79391518 GGCTTTT
1 GGCTTTT
79391525 TTATATAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.14, G:0.32, T:0.49
Consensus pattern (15 bp):
GGCTTTTGGGATTTC
Found at i:79402016 original size:79 final size:82
Alignment explanation
Indices: 79401876--79402060 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
79401866 TCGAATGATG
* * *
79401876 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
79401940 CGTGCGAGAT-AATA-AA
66 CGTGCGAG-TCAATATAA
* **
79401956 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
79402018 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
79402036 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79402061 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:79402040 original size:40 final size:40
Alignment explanation
Indices: 79401877--79402068 Score: 169
Period size: 40 Copynumber: 4.8 Consensus size: 40
79401867 CGAATGATGT
* * * *
79401877 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
* * * * *
79401917 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGAT-AATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TCACTAAAC
* *
79401957 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
* *
79401996 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
** *
79402036 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
79402069 GTTATATCCG
Statistics
Matches: 124, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
39 31 0.25
40 82 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:79402091 original size:79 final size:79
Alignment explanation
Indices: 79401876--79402093 Score: 176
Period size: 79 Copynumber: 2.7 Consensus size: 79
79401866 TCGAATGATG
* * * * ** *
79401876 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
79401939 TCGTGCGAGATAATAAA
63 TCGTGCGAGATAATAAA
* * * *
79401956 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
79402021 TGCGAG-TCACTATAA
66 TGCGAGAT-AATA-AA
** * ** * *
79402036 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
79402094 TACGTGATTC
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
78 1 0.01
79 68 0.60
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGATAATAAA
Found at i:79409983 original size:40 final size:39
Alignment explanation
Indices: 79409952--79410050 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 39
79409942 CGGACTAGGA
79409952 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAG
1 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAG
* * * * * * *
79409991 CCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAG
1 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAG
79410030 TCCCGAAGGCATTCGTGCGAG
1 T-CCGAAGGCATTCGTGCGAG
79410051 TCACTATAAC
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
39 32 0.65
40 17 0.35
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.21
Consensus pattern (39 bp):
TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAG
Found at i:79410064 original size:40 final size:40
Alignment explanation
Indices: 79409953--79410092 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 40
79409943 GGACTAGGAT
* * *
79409953 CCGAAGGCATTCGTGCGAGAT-AATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAG-TCACTAAACCCGGGTTAAGTC
* * *
79409992 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGTTAAGTC
*
79410032 CCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTT-CGTC
1 CCGAAGGCATTCGTGCGAGTCACTA-AACCCGGG-TTAAGTC
* *
79410072 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTCGTGCGAGTC
79410093 GTTATATCCG
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 31 0.36
40 50 0.58
41 4 0.05
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTCACTAAACCCGGGTTAAGTC
Found at i:79410115 original size:79 final size:79
Alignment explanation
Indices: 79409952--79410117 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
79409942 CGGACTAGGA
* *
79409952 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
79410017 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * *
79410031 CCCGAAGGCATTCGTGCGAG-TCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCG
1 TCCGAAGGCATTCGTGCGAGAT-AATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCA
* * *
79410094 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
79410110 TCCGAAGG
1 TCCGAAGG
79410118 TACGTGATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 44 0.62
80 26 0.37
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGATAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:79411632 original size:46 final size:46
Alignment explanation
Indices: 79411534--79411755 Score: 200
Period size: 46 Copynumber: 4.7 Consensus size: 46
79411524 TGGGTAAAGT
* * *
79411534 GCCGATGCCATGTCCCAAACATGGTCTTACACT-GCCTATCATCTC-ATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGA-G
* *
79411582 GCCGATGCATGTCCCAAACATGTCTTACACTAGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * * * *
79411628 GCCGATGTATATCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * * *
79411674 GTCGATGCGATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
*
79411722 GTCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
79411756 CAACAATAAC
Statistics
Matches: 148, Mismatches: 19, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
45 1 0.01
46 74 0.50
47 40 0.27
48 32 0.22
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:79416686 original size:21 final size:22
Alignment explanation
Indices: 79416653--79416698 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
79416643 TCATCTTGAT
79416653 AAAATAAATTTTTTTGTTGGAA
1 AAAATAAATTTTTTTGTTGGAA
79416675 AAAATAAA-TTTTTTGTTGGAA
1 AAAATAAATTTTTTTGTTGGAA
79416696 AAA
1 AAA
79416699 TATTCTTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (22 bp):
AAAATAAATTTTTTTGTTGGAA
Found at i:79424517 original size:27 final size:23
Alignment explanation
Indices: 79424487--79424534 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
79424477 AACTTACTTT
79424487 ATGTATGTATTATTTATTTTATA
1 ATGTATGTATTATTTATTTTATA
79424510 ATGTATGTATTATTTATTTTATA
1 ATGTATGTATTATTTATTTTATA
79424533 AT
1 AT
79424535 CCTTACTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.60
Consensus pattern (23 bp):
ATGTATGTATTATTTATTTTATA
Found at i:79424916 original size:27 final size:26
Alignment explanation
Indices: 79424843--79424936 Score: 89
Period size: 26 Copynumber: 3.6 Consensus size: 26
79424833 TATGTCATTC
* * * **
79424843 TTTAATTTGCTTTGTGTATTATAGAT
1 TTTAAATTGTTTTATGTATTATTCAT
* * ** *
79424869 TTTAAAATGCTTTATACATTATTTAT
1 TTTAAATTGTTTTATGTATTATTCAT
79424895 TTTAAACTTGTTTTATGTATTATTCAT
1 TTTAAA-TTGTTTTATGTATTATTCAT
79424922 TTTAAATTGTTTTAT
1 TTTAAATTGTTTTAT
79424937 TGTTTACTTT
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 34 0.62
27 21 0.38
ACGTcount: A:0.28, C:0.05, G:0.09, T:0.59
Consensus pattern (26 bp):
TTTAAATTGTTTTATGTATTATTCAT
Found at i:79427920 original size:214 final size:214
Alignment explanation
Indices: 79427551--79427979 Score: 777
Period size: 214 Copynumber: 2.0 Consensus size: 214
79427541 CTGCATCAAG
* *
79427551 CAAAAAGGGGAAAGTAAGTGTATTCCTTGGAGGAATTTGAGGGACTTGATTCTTGCGCACCCGGA
1 CAAAAAGGGGAAAGTAAGTGTATTCCTTAGAGGAATTTGAGGGACTTGATTCTTGCGCACCCAGA
*
79427616 TTCGAAGAAAAGGGTTGATGTTTTTGCCTTAAGCCTCTACGGTTTGATCATCTTTCCTAAGGCAC
66 TTCGAAGAAAAAGGTTGATGTTTTTGCCTTAAGCCTCTACGGTTTGATCATCTTTCCTAAGGCAC
* *
79427681 TAGGACACATAGATGAAGCGGTCTCAGATCTATTCGATTGGCTTGATAAAGGTACTACACCTGTC
131 TAGGACACATAGATGAAGCGGTCTCAGATCTATTCGATCGGCTTGATAAAGGTACTACACCTATC
*
79427746 TCGGCAATCCTAGCAGAAA
196 TCGACAATCCTAGCAGAAA
*
79427765 CAAAAAGGGGATAGTAAGTGTATTCCTTAGAGGAATTTGAGGGACTTGATTCTTGCGCACCCAGA
1 CAAAAAGGGGAAAGTAAGTGTATTCCTTAGAGGAATTTGAGGGACTTGATTCTTGCGCACCCAGA
**
79427830 TTCGAAGAAAAAGGTTGATGTTTTTGCCTTAAGCCTCTACGGTTTGATCATCTTTCCTAAGGTGC
66 TTCGAAGAAAAAGGTTGATGTTTTTGCCTTAAGCCTCTACGGTTTGATCATCTTTCCTAAGGCAC
79427895 TAGGACACATAGATGAAGCGGTCTCAGATCTATTCGATCGGCTTGATAAAGGTACTACACCTATC
131 TAGGACACATAGATGAAGCGGTCTCAGATCTATTCGATCGGCTTGATAAAGGTACTACACCTATC
79427960 TCGACAATCCTAGCAGAAA
196 TCGACAATCCTAGCAGAAA
79427979 C
1 C
79427980 TTTCAGATCC
Statistics
Matches: 206, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
214 206 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (214 bp):
CAAAAAGGGGAAAGTAAGTGTATTCCTTAGAGGAATTTGAGGGACTTGATTCTTGCGCACCCAGA
TTCGAAGAAAAAGGTTGATGTTTTTGCCTTAAGCCTCTACGGTTTGATCATCTTTCCTAAGGCAC
TAGGACACATAGATGAAGCGGTCTCAGATCTATTCGATCGGCTTGATAAAGGTACTACACCTATC
TCGACAATCCTAGCAGAAA
Found at i:79429481 original size:19 final size:20
Alignment explanation
Indices: 79429454--79429494 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
79429444 TCTTTTTGCA
* *
79429454 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
79429474 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
79429493 TT
1 TT
79429495 TGCAAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:79429656 original size:24 final size:24
Alignment explanation
Indices: 79429629--79429675 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
79429619 ATAGAACAAA
*
79429629 TACAAAAAGAAATGCAAGAGCAAT
1 TACAAAAACAAATGCAAGAGCAAT
** *
79429653 TACAAGCACAGATGCAAGAGCAA
1 TACAAAAACAAATGCAAGAGCAA
79429676 CTGGCTAAGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (24 bp):
TACAAAAACAAATGCAAGAGCAAT
Found at i:79437741 original size:43 final size:43
Alignment explanation
Indices: 79437585--79437747 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
79437575 ATTCGCAGAT
* * * * * *
79437585 CTTAACCTCCTAAGCAGTAGGGAAACAGATTGAGGA-TGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTGA--ATTTACGAGC
* * * *
79437629 TTTAA-CCCCTAAGCAGTAAGGTAACAAGCTGAATTTACGAGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTACGAGC
*
79437671 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTAC-AGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTACGAG-C
79437714 CTTAACCCCCTAA-CTAGTAGGGTAACAGGTTGAA
1 CTTAACCCCCTAAGC-AGTAGGGTAACAGGTTGAA
79437748 AATCAGGTAT
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 12 0.12
43 83 0.83
44 4 0.04
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (43 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGTTGAATTTACGAGC
Found at i:79437946 original size:44 final size:44
Alignment explanation
Indices: 79437801--79438005 Score: 134
Period size: 44 Copynumber: 4.7 Consensus size: 44
79437791 GCCACAACAG
* * * * * *
79437801 ATCTCCTTGAAGTTTCAGTGGAG-AAGATTGAAAATCATAGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAAG-TTG-AAATCACAAACCTC
* * * * ** *
79437846 GTCTCTCTGAAGTTGCAGTAGAGC-AGATCCAA--ACAAACCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAATCACAAACCTC
* **
79437887 ATCTCCCT-AAGTTGCAGCGGAGCAAGTTGAAATCACAAGTCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAATCACAAACCTC
* * * *
79437930 ATCTCCCTGAAGTTGCAATGGAG-TAGATTGAAGTCGCAAACCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAAG-TTGAAATCACAAACCTC
* * *
79437974 ATCTCCCTGAAGATGCAGTGGGGCAGGTTGAA
1 ATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAA
79438006 CTTACCAAGG
Statistics
Matches: 120, Mismatches: 33, Indels: 15
0.71 0.20 0.09
Matches are distributed among these distances:
40 13 0.11
41 17 0.14
43 18 0.15
44 51 0.43
45 21 0.17
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAATCACAAACCTC
Found at i:79439659 original size:27 final size:23
Alignment explanation
Indices: 79439629--79439676 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
79439619 AACTTACTTT
79439629 ATGTATGTATTATTTATTTTATA
1 ATGTATGTATTATTTATTTTATA
79439652 ATGTATGTATTATTTATTTTATA
1 ATGTATGTATTATTTATTTTATA
79439675 AT
1 AT
79439677 CCTTACTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.60
Consensus pattern (23 bp):
ATGTATGTATTATTTATTTTATA
Found at i:79440098 original size:22 final size:22
Alignment explanation
Indices: 79440054--79440098 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
79440044 TTGTTTTATG
* *
79440054 TATTGTTCATTTTAAATTGTTT
1 TATTGTTCACTTTAAATTCTTT
* *
79440076 TATTGTTTACTTTAATTTCTTT
1 TATTGTTCACTTTAAATTCTTT
79440098 T
1 T
79440099 CCCTATATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (22 bp):
TATTGTTCACTTTAAATTCTTT
Found at i:79442609 original size:38 final size:38
Alignment explanation
Indices: 79442550--79442656 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
79442540 TCAATCATGC
*
79442550 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
79442589 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
79442627 ACTGGGCCGAAGCCTTTTCATA-TTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
79442657 ACTGGCCGAA
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 8 0.12
38 46 0.71
39 11 0.17
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:79442615 original size:31 final size:30
Alignment explanation
Indices: 79442573--79442672 Score: 94
Period size: 38 Copynumber: 3.1 Consensus size: 30
79442563 CCTTTTCATA
79442573 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCAT-TTTCATAATACTGGGCCGAAG-C----C-T
79442610 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCAT-TTTCATAATACTGGGCCGAAGCCT
* *
79442642 TTTCATATTCATATTACT-GGCCGAAGCCT
1 TTTCATTTTCATAATACTGGGCCGAAGCCT
79442671 TT
1 TT
79442673 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 2, Indels: 9
0.85 0.03 0.13
Matches are distributed among these distances:
29 13 0.22
30 10 0.17
31 6 0.10
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.47
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (30 bp):
TTTCATTTTCATAATACTGGGCCGAAGCCT
Found at i:79442671 original size:29 final size:31
Alignment explanation
Indices: 79442611--79442672 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 31
79442601 CCTTTTCATG
79442611 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
79442642 TTTCATA-TTCATATTACT-GGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
79442671 TT
1 TT
79442673 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 13 0.43
30 10 0.33
31 7 0.23
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:79442909 original size:24 final size:24
Alignment explanation
Indices: 79442863--79442934 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
79442853 GCTTTATCAT
*
79442863 ATAACTGGAGGCC-TAGCCTCTTTTA
1 ATAACTGG-GGCCAAAGCC-CTTTTA
*
79442888 ATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGGGGCCAAAGCCCTTTTA
79442912 ATAACTGGGG-CATAAGCCCTTTT
1 ATAACTGGGGCCA-AAGCCCTTTT
79442935 TCACTTCTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.05
24 28 0.67
25 12 0.29
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTTA
Found at i:79443010 original size:20 final size:20
Alignment explanation
Indices: 79442985--79443044 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
79442975 TATGATTACC
79442985 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
79443005 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
79443025 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
79443045 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:79443015 original size:11 final size:11
Alignment explanation
Indices: 79442985--79443039 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79442975 TATGATTACC
79442985 TCATGTGCATA
1 TCATGTGCATA
*
79442996 TCA--TACATA
1 TCATGTGCATA
79443005 TCATGTGCATA
1 TCATGTGCATA
* *
79443016 TCA--TACATT
1 TCATGTGCATA
79443025 TCATGTGCATA
1 TCATGTGCATA
79443036 TCAT
1 TCAT
79443040 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79450875 original size:38 final size:38
Alignment explanation
Indices: 79450816--79450923 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
79450806 TCAATCATGC
*
79450816 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
79450855 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
79450893 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
79450924 ACTGGGCCGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 55 0.83
39 11 0.17
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:79450881 original size:31 final size:31
Alignment explanation
Indices: 79450839--79450940 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
79450829 CCTTTTCATA
79450839 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
79450876 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
79450908 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
79450939 TT
1 TT
79450941 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:79451178 original size:24 final size:24
Alignment explanation
Indices: 79451132--79451202 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
79451122 GCTTTATCAT
*
79451132 ATAACTGGAGGCC-TAGCCTCTTTTA
1 ATAACTGG-GGCCAAAGCC-CTTTTA
*
79451157 ATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGGGGCCAAAGCCCTTTTA
79451181 ATAACT-GGG-CATAAGCCCTTTT
1 ATAACTGGGGCCA-AAGCCCTTTT
79451203 TCACTTCCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 2 0.05
23 12 0.29
24 15 0.37
25 12 0.29
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTTA
Found at i:79451278 original size:20 final size:20
Alignment explanation
Indices: 79451253--79451312 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
79451243 TATGATTACC
79451253 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
79451273 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
79451293 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
79451313 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:79451283 original size:11 final size:11
Alignment explanation
Indices: 79451253--79451307 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79451243 TATGATTACC
79451253 TCATGTGCATA
1 TCATGTGCATA
*
79451264 TCA--TACATA
1 TCATGTGCATA
79451273 TCATGTGCATA
1 TCATGTGCATA
* *
79451284 TCA--TACATT
1 TCATGTGCATA
79451293 TCATGTGCATA
1 TCATGTGCATA
79451304 TCAT
1 TCAT
79451308 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79451387 original size:25 final size:25
Alignment explanation
Indices: 79451355--79451402 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79451345 ATACATAAAC
* * *
79451355 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
79451380 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
79451403 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:79453569 original size:20 final size:17
Alignment explanation
Indices: 79453530--79453567 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
79453520 GGCCCGCCCG
79453530 TATTAATTTTTTATATA
1 TATTAATTTTTTATATA
*
79453547 TATTATATTATTTATATA
1 TATTA-ATTTTTTATATA
79453565 TAT
1 TAT
79453568 ATATAATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTAATTTTTTATATA
Found at i:79454726 original size:32 final size:32
Alignment explanation
Indices: 79454665--79454727 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
79454655 ATTTGGTACC
* **
79454665 TCAACTTTTATAACGACATTAGTTTAATTACG
1 TCAACTTGTATAACGACATTAGTCCAATTACG
79454697 TCAACTTGTATAACGACATTAGTCCAATTAC
1 TCAACTTGTATAACGACATTAGTCCAATTAC
79454728 TTTATTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (32 bp):
TCAACTTGTATAACGACATTAGTCCAATTACG
Found at i:79454761 original size:59 final size:59
Alignment explanation
Indices: 79454697--79454815 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
79454687 TTTAATTACG
79454697 TCAACTTGTATAACGACATTAGTCCAATTACTTTATTATAATTAAAATGTTAACATGGA
1 TCAACTTGTATAACGACATTAGTCCAATTACTTTATTATAATTAAAATGTTAACATGGA
79454756 TCAACTTGTATAACGACATTAGTCCAATTACTTTATTATAATTAAAATGTTAACATGGA
1 TCAACTTGTATAACGACATTAGTCCAATTACTTTATTATAATTAAAATGTTAACATGGA
79454815 T
1 T
79454816 TTTAAGAATT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38
Consensus pattern (59 bp):
TCAACTTGTATAACGACATTAGTCCAATTACTTTATTATAATTAAAATGTTAACATGGA
Found at i:79461193 original size:23 final size:21
Alignment explanation
Indices: 79461154--79461195 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
79461144 TACTTAAGTA
79461154 ACATTTTGTTGCATTTTTAGG
1 ACATTTTGTTGCATTTTTAGG
79461175 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
79461196 ATATTGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGG
Found at i:79479603 original size:76 final size:76
Alignment explanation
Indices: 79479506--79479653 Score: 251
Period size: 76 Copynumber: 1.9 Consensus size: 76
79479496 CTGAAAATGG
* * * *
79479506 CATACCAAACACCTTTTTAGCAATTTAATTTACGAAACGACAATGATAATCCAAACAATGCACAT
1 CATACCAAACACCCTTTTAGCAATTTAATTTACGAAACGACAATAATAACCCAAACAATGCACAC
79479571 GAACTTATCGA
66 GAACTTATCGA
*
79479582 CATACCAAACACCCTTTTAGCAATTTAATTTACGAAACGACAATAATTACCCAAACAATGCACAC
1 CATACCAAACACCCTTTTAGCAATTTAATTTACGAAACGACAATAATAACCCAAACAATGCACAC
79479647 GAACTTA
66 GAACTTA
79479654 CCGGCGACGA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (76 bp):
CATACCAAACACCCTTTTAGCAATTTAATTTACGAAACGACAATAATAACCCAAACAATGCACAC
GAACTTATCGA
Found at i:79497081 original size:17 final size:17
Alignment explanation
Indices: 79497059--79497094 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
79497049 AAAAGGTTCA
79497059 CAAATGCGTATGAAATT
1 CAAATGCGTATGAAATT
*
79497076 CAAATGGGTATGAAATT
1 CAAATGCGTATGAAATT
79497093 CA
1 CA
79497095 TCTTGTGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (17 bp):
CAAATGCGTATGAAATT
Found at i:79503920 original size:18 final size:18
Alignment explanation
Indices: 79503897--79503953 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
79503887 ATATACCCAC
79503897 AGTAAGCTATAATAGCTT
1 AGTAAGCTATAATAGCTT
*
79503915 AGTAAG-TCAT-A-AGC-A
1 AGTAAGCT-ATAATAGCTT
*
79503930 AATAAGCTATAATAGCTT
1 AGTAAGCTATAATAGCTT
79503948 AGTAAG
1 AGTAAG
79503954 TAATTAAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 7 0.23
16 5 0.17
17 5 0.17
18 13 0.43
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.28
Consensus pattern (18 bp):
AGTAAGCTATAATAGCTT
Found at i:79506307 original size:25 final size:25
Alignment explanation
Indices: 79506276--79506379 Score: 95
Period size: 25 Copynumber: 4.2 Consensus size: 25
79506266 AGCCCTCTCT
79506276 TGAGCCATATAACAGGAAGCTCATG
1 TGAGCCATATAACAGGAAGCTCATG
* * *
79506301 TGAGCCATATAACGGGAAGCTTATC
1 TGAGCCATATAACAGGAAGCTCATG
* * ** *
79506326 CGGGCTGTATAAC-GGAATGCTCATA
1 TGAGCCATATAACAGGAA-GCTCATG
* *
79506351 AGAGCCATA-ATCAGGAAGCTCATG
1 TGAGCCATATAACAGGAAGCTCATG
79506375 TGAGC
1 TGAGC
79506380 TAATAACGGG
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
24 16 0.26
25 45 0.74
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (25 bp):
TGAGCCATATAACAGGAAGCTCATG
Found at i:79506538 original size:26 final size:26
Alignment explanation
Indices: 79506472--79506531 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
79506462 GAAGCTCTGG
*
79506472 AGAGCCATTAATTGAAAAGCTCACAA
1 AGAGCCATTAATCGAAAAGCTCACAA
* *
79506498 AGAGCCTTTAATCGAAAAGCTCACGA
1 AGAGCCATTAATCGAAAAGCTCACAA
79506524 AGAGCCAT
1 AGAGCCAT
79506532 ATATCGAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCGAAAAGCTCACAA
Done.