Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr11 124536837 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 124536837 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Warning! 312 characters in sequence are not A, C, G, or T File 275 of 427 Found at i:79507922 original size:46 final size:46 Alignment explanation
Indices: 79507855--79508029 Score: 210 Period size: 46 Copynumber: 3.8 Consensus size: 46 79507845 AACCCGCCCC * * 79507855 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA * * * * * 79507901 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAG-TTACA 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA * * ** 79507947 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA 1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA 79507994 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG 1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG 79508030 CTCAACCATC Statistics Matches: 104, Mismatches: 20, Indels: 10 0.78 0.15 0.07 Matches are distributed among these distances: 45 2 0.02 46 67 0.64 47 33 0.32 48 2 0.02 ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23 Consensus pattern (46 bp): TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA Found at i:79507967 original size:93 final size:93 Alignment explanation
Indices: 79507860--79508030 Score: 297 Period size: 93 Copynumber: 1.8 Consensus size: 93 79507850 GCCCCTAAGT *** 79507860 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 79507925 CGAGTTCAGATGCCTAGTTACATTTCAC 66 CGAGTTCAGATGCCTAGTTACATTTCAC * 79507953 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA * 79508018 CGAGTTCGGATGC 66 CGAGTTCAGATGC 79508031 TCAACCATCC Statistics Matches: 73, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 93 73 1.00 ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCAGATGCCTAGTTACATTTCAC Found at i:79508484 original size:30 final size:30 Alignment explanation
Indices: 79508450--79508509 Score: 86 Period size: 30 Copynumber: 2.0 Consensus size: 30 79508440 ATTTAATACG 79508450 AACTTTGGA-AAAATTACACTTTTGCCCCTA 1 AACTTT-GACAAAATTACACTTTTGCCCCTA * * 79508480 AACTTTTACATAATTACACTTTTGCCCCTA 1 AACTTTGACAAAATTACACTTTTGCCCCTA 79508510 GGCTCGGGAA Statistics Matches: 27, Mismatches: 2, Indels: 2 0.87 0.06 0.06 Matches are distributed among these distances: 29 1 0.04 30 26 0.96 ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37 Consensus pattern (30 bp): AACTTTGACAAAATTACACTTTTGCCCCTA Found at i:79515134 original size:20 final size:20 Alignment explanation
Indices: 79515109--79515149 Score: 82 Period size: 20 Copynumber: 2.0 Consensus size: 20 79515099 AAATTTCATC 79515109 ATACCATTGCTGATTGGGAG 1 ATACCATTGCTGATTGGGAG 79515129 ATACCATTGCTGATTGGGAG 1 ATACCATTGCTGATTGGGAG 79515149 A 1 A 79515150 CAGAAATATG Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 20 21 1.00 ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29 Consensus pattern (20 bp): ATACCATTGCTGATTGGGAG Found at i:79520471 original size:130 final size:130 Alignment explanation
Indices: 79520238--79520471 Score: 351 Period size: 130 Copynumber: 1.8 Consensus size: 130 79520228 TGTGGGATTT ** 79520238 TAGGAACAATATCTGGTGGCTTCATCCTAGATCGCATGGGTGCTACAATATCTAATGCTTTTATT 1 TAGGAACAATATCTGGTGGCTTCATCCTAGATCGCATAAGTGCTACAATATCTAATGCTTTTATT * ** * * * 79520303 GTGAGTTTGTTTTGTTTTGATGATGTTTTGCCTGAATGGTTTCATTTTACATACTTATCAAAATA 66 CTGAGTTTGGGTTGCTTTAATGATGTTTGGCCTGAATGGTTTCATTTTACATACTTATCAAAATA * * * 79520368 TAGGAACATTATCTGGTGGTTTCATCCTAGATTGCATAAGTGCTACAATATCTAATGCTTTTATT 1 TAGGAACAATATCTGGTGGCTTCATCCTAGATCGCATAAGTGCTACAATATCTAATGCTTTTATT ** 79520433 CTGAGTTTGGGTTGCTTTAATGATGTTTGGTGTGAATGG 66 CTGAGTTTGGGTTGCTTTAATGATGTTTGGCCTGAATGG 79520472 CATGCTTATA Statistics Matches: 91, Mismatches: 13, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 130 91 1.00 ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42 Consensus pattern (130 bp): TAGGAACAATATCTGGTGGCTTCATCCTAGATCGCATAAGTGCTACAATATCTAATGCTTTTATT CTGAGTTTGGGTTGCTTTAATGATGTTTGGCCTGAATGGTTTCATTTTACATACTTATCAAAATA Found at i:79521900 original size:2 final size:2 Alignment explanation
Indices: 79521893--79521923 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 79521883 TATGAGTTGC 79521893 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 79521924 GTTTCTGTTC Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:79523133 original size:6 final size:6 Alignment explanation
Indices: 79523118--79523155 Score: 69 Period size: 6 Copynumber: 6.5 Consensus size: 6 79523108 ACGTTACTTC 79523118 TTTTTG -TTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTT 1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTT 79523156 AAATGATTTA Statistics Matches: 31, Mismatches: 0, Indels: 2 0.94 0.00 0.06 Matches are distributed among these distances: 5 5 0.16 6 26 0.84 ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84 Consensus pattern (6 bp): TTTTTG Found at i:79539485 original size:12 final size:12 Alignment explanation
Indices: 79539464--79539494 Score: 55 Period size: 12 Copynumber: 2.7 Consensus size: 12 79539454 GGGTTGTTGA 79539464 AAAAAG-AATTT 1 AAAAAGAAATTT 79539475 AAAAAGAAATTT 1 AAAAAGAAATTT 79539487 AAAAAGAA 1 AAAAAGAA 79539495 GATTATCTTG Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 11 6 0.32 12 13 0.68 ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19 Consensus pattern (12 bp): AAAAAGAAATTT Found at i:79539499 original size:50 final size:50 Alignment explanation
Indices: 79539424--79539531 Score: 207 Period size: 50 Copynumber: 2.2 Consensus size: 50 79539414 GTTTTTATCC * 79539424 TAAAAAAAAATTTAAAAAGAAGATTATCTTGGGTTGTTGAAAAAAGAATT 1 TAAAAAGAAATTTAAAAAGAAGATTATCTTGGGTTGTTGAAAAAAGAATT 79539474 TAAAAAGAAATTTAAAAAGAAGATTATCTTGGGTTGTTGAAAAAAGAATT 1 TAAAAAGAAATTTAAAAAGAAGATTATCTTGGGTTGTTGAAAAAAGAATT 79539524 TAAAAAGA 1 TAAAAAGA 79539532 GGAGAAGATA Statistics Matches: 57, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 50 57 1.00 ACGTcount: A:0.53, C:0.02, G:0.17, T:0.29 Consensus pattern (50 bp): TAAAAAGAAATTTAAAAAGAAGATTATCTTGGGTTGTTGAAAAAAGAATT Found at i:79542555 original size:31 final size:32 Alignment explanation
Indices: 79542517--79542577 Score: 115 Period size: 32 Copynumber: 1.9 Consensus size: 32 79542507 ACGCGAAAGT 79542517 TGTCTTCCCTTT-GTTCTTATGTTATTTCTAC 1 TGTCTTCCCTTTGGTTCTTATGTTATTTCTAC 79542548 TGTCTTCCCTTTGGTTCTTATGTTATTTCT 1 TGTCTTCCCTTTGGTTCTTATGTTATTTCT 79542578 TACTTTGTTC Statistics Matches: 29, Mismatches: 0, Indels: 1 0.97 0.00 0.03 Matches are distributed among these distances: 31 12 0.41 32 17 0.59 ACGTcount: A:0.08, C:0.21, G:0.11, T:0.59 Consensus pattern (32 bp): TGTCTTCCCTTTGGTTCTTATGTTATTTCTAC Found at i:79549177 original size:17 final size:17 Alignment explanation
Indices: 79549157--79549195 Score: 51 Period size: 17 Copynumber: 2.3 Consensus size: 17 79549147 TTCAAATTGT * 79549157 GACATTATTGAGTATTC 1 GACATGATTGAGTATTC * 79549174 GACATGGTTGAGTATTC 1 GACATGATTGAGTATTC * 79549191 AACAT 1 GACAT 79549196 AATAAATGTG Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 17 19 1.00 ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36 Consensus pattern (17 bp): GACATGATTGAGTATTC Found at i:79553561 original size:25 final size:26 Alignment explanation
Indices: 79553527--79553579 Score: 90 Period size: 25 Copynumber: 2.1 Consensus size: 26 79553517 TGTATATAAG 79553527 TATGTATATATATAT-TTTAAGAAGT 1 TATGTATATATATATATTTAAGAAGT * 79553552 TATGTGTATATATATATTTAAGAAGT 1 TATGTATATATATATATTTAAGAAGT 79553578 TA 1 TA 79553580 CAAATATAAG Statistics Matches: 26, Mismatches: 1, Indels: 1 0.93 0.04 0.04 Matches are distributed among these distances: 25 14 0.54 26 12 0.46 ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47 Consensus pattern (26 bp): TATGTATATATATATATTTAAGAAGT Found at i:79553578 original size:26 final size:27 Alignment explanation
Indices: 79553529--79553579 Score: 95 Period size: 26 Copynumber: 1.9 Consensus size: 27 79553519 TATATAAGTA 79553529 TGTATATATATATTTTAAGAAGTTATG 1 TGTATATATATATTTTAAGAAGTTATG 79553556 TGTATATATATA-TTTAAGAAGTTA 1 TGTATATATATATTTTAAGAAGTTA 79553580 CAAATATAAG Statistics Matches: 24, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 26 12 0.50 27 12 0.50 ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47 Consensus pattern (27 bp): TGTATATATATATTTTAAGAAGTTATG Found at i:79553587 original size:26 final size:27 Alignment explanation
Indices: 79553531--79553587 Score: 71 Period size: 26 Copynumber: 2.1 Consensus size: 27 79553521 TATAAGTATG **** 79553531 TATATATATATTTTAAGAAGTTATGTG 1 TATATATATATTTTAAGAAGTTACAAA 79553558 TATATATATA-TTTAAGAAGTTACAAA 1 TATATATATATTTTAAGAAGTTACAAA 79553584 TATA 1 TATA 79553588 AGTATTATCA Statistics Matches: 26, Mismatches: 4, Indels: 1 0.84 0.13 0.03 Matches are distributed among these distances: 26 16 0.62 27 10 0.38 ACGTcount: A:0.44, C:0.02, G:0.11, T:0.44 Consensus pattern (27 bp): TATATATATATTTTAAGAAGTTACAAA Found at i:79559543 original size:5 final size:5 Alignment explanation
Indices: 79559535--79559565 Score: 53 Period size: 5 Copynumber: 6.2 Consensus size: 5 79559525 AGAAGGAATC * 79559535 TTTTT TTTTA TTTTA TTTTA TTTTA TTTTA T 1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T 79559566 CGTGAAAGAG Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 5 25 1.00 ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84 Consensus pattern (5 bp): TTTTA Found at i:79562183 original size:25 final size:23 Alignment explanation
Indices: 79562146--79562191 Score: 65 Period size: 25 Copynumber: 1.9 Consensus size: 23 79562136 TTTGTTTTAA * 79562146 TATTTGTTTTTATGTTTTAAATG 1 TATTTGTTTTTATATTTTAAATG 79562169 TATTTGATTTATTATATTTTAAA 1 TATTTG-TTT-TTATATTTTAAA 79562192 GTTTTTTATT Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 23 6 0.30 24 3 0.15 25 11 0.55 ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63 Consensus pattern (23 bp): TATTTGTTTTTATATTTTAAATG Found at i:79564689 original size:49 final size:49 Alignment explanation
Indices: 79564621--79564753 Score: 153 Period size: 49 Copynumber: 2.7 Consensus size: 49 79564611 GCACATTAAA * * * * 79564621 GTCGATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATATCAAG- 1 GTCGAAGCAATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGT * * * 79564670 G-CAGAAGCAATGTCGCAGACAGGTCTTACACTGGCTCTCATCTATCAGT 1 GTC-GAAGCAATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGT * * 79564719 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC 1 GTCGAAGCAATGTCCCAGACAGGTCTTACACTGAC 79564754 ACACAACAAA Statistics Matches: 70, Mismatches: 11, Indels: 6 0.80 0.13 0.07 Matches are distributed among these distances: 48 3 0.04 49 66 0.94 50 1 0.01 ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26 Consensus pattern (49 bp): GTCGAAGCAATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGT Found at i:79568006 original size:2 final size:2 Alignment explanation
Indices: 79567988--79568027 Score: 62 Period size: 2 Copynumber: 20.0 Consensus size: 2 79567978 TATGGTAAGA * * 79567988 AT AT GT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 79568028 GAAGAATAAG Statistics Matches: 34, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 2 34 1.00 ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50 Consensus pattern (2 bp): AT Found at i:79570549 original size:42 final size:42 Alignment explanation
Indices: 79570502--79570608 Score: 196 Period size: 42 Copynumber: 2.5 Consensus size: 42 79570492 TATTGGTCTC 79570502 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT 1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT 79570544 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT 1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT * * 79570586 GGCACTACGTGTGCGGGTTTAAA 1 GGCACTAAGTGTGCGGGTATAAA 79570609 ATTGTACAGC Statistics Matches: 63, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 42 63 1.00 ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22 Consensus pattern (42 bp): GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT Found at i:79570670 original size:26 final size:28 Alignment explanation
Indices: 79570616--79570684 Score: 97 Period size: 26 Copynumber: 2.5 Consensus size: 28 79570606 AAAATTGTAC ** 79570616 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT * 79570644 AGCACTATGTGTGCG-AGCTGATT-TAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT 79570670 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 79570685 GATTCACTAT Statistics Matches: 37, Mismatches: 4, Indels: 2 0.86 0.09 0.05 Matches are distributed among these distances: 26 17 0.46 27 6 0.16 28 14 0.38 ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32 Consensus pattern (28 bp): AGCACTAAGTGTGCGAAGCTGATTATAT Found at i:79588624 original size:75 final size:78 Alignment explanation
Indices: 79588505--79588673 Score: 254 Period size: 75 Copynumber: 2.2 Consensus size: 78 79588495 GAATCCAGTC * * * * 79588505 ACCAGCACAAAACCTGCGTGACTTTAAGCTCGAATATAATACCAGCACTAAGCCTGCGGGATTTA 1 ACCAGCACAAAGCCTGCGGGACTTTAACCTCGAATATAATACCAGCACGAAGCCTGCGGGATTTA 79588570 ACCCGGATATAA- 66 ACCCGGATATAAT * * 79588582 ACCAGCACTAAGCCTGCGGGA-TTTAACCT-GAATATAATACCAGCACGAAGCTTGCGGGATTTA 1 ACCAGCACAAAGCCTGCGGGACTTTAACCTCGAATATAATACCAGCACGAAGCCTGCGGGATTTA 79588645 ACCCGGATATAAT 66 ACCCGGATATAAT * 79588658 ACCAGCACGAAGCCTG 1 ACCAGCACAAAGCCTG 79588674 TGGATCTTTA Statistics Matches: 84, Mismatches: 7, Indels: 3 0.89 0.07 0.03 Matches are distributed among these distances: 75 44 0.52 76 22 0.26 77 18 0.21 ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20 Consensus pattern (78 bp): ACCAGCACAAAGCCTGCGGGACTTTAACCTCGAATATAATACCAGCACGAAGCCTGCGGGATTTA ACCCGGATATAAT Found at i:79588638 original size:38 final size:38 Alignment explanation
Indices: 79588505--79588673 Score: 223 Period size: 38 Copynumber: 4.4 Consensus size: 38 79588495 GAATCCAGTC * * * * 79588505 ACCAGCACAAAACCTGCGTGACTTTAAGCTCGAATATAAT 1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGAATATAAT * * 79588545 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAA- 1 ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT * * 79588582 ACCAGCACTAAGCCTGCGGGATTTAACCTGAATATAAT 1 ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT * * 79588620 ACCAGCACGAAGCTTGCGGGATTTAACCCGGATATAAT 1 ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT 79588658 ACCAGCACGAAGCCTG 1 ACCAGCACGAAGCCTG 79588674 TGGATCTTTA Statistics Matches: 116, Mismatches: 12, Indels: 4 0.88 0.09 0.03 Matches are distributed among these distances: 37 35 0.30 38 58 0.50 39 5 0.04 40 18 0.16 ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20 Consensus pattern (38 bp): ACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAAT Found at i:79601463 original size:345 final size:346 Alignment explanation
Indices: 79600826--79601855 Score: 1315 Period size: 345 Copynumber: 3.0 Consensus size: 346 79600816 GATTGAAAGT * * * * 79600826 ACATCAGCCTAGACCCAAGAAGAAGATATCCTAAATCTGTTTATGGATTTATTCACTTGTGACAT 1 ACATCAGACTAGACCTAAAAAGAAGAGATCCTAAATCTGTTTATGGATTTATTCACTTGTGACAT * * * 79600891 TCAAAGTGTGGCATACCTTAATCTTGAGTGGATGAC-AGACTATGTATGCGTGACTCATATACAT 66 TCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACGA-AGTATGTATGCATGACTCATATACAT * * ** * * 79600955 AGATGTAAGCAAAATTCTAAGTTC-AATTAGATAAGGAATTGAAGGTTGGTGCATTGGGTATACG 130 TGATGTAAGTAAAAGCCTGAGTTCAAATT-GATAAGGAATTGAAGGCT-GTGCATTGGGTATACG * * * * * 79601019 ACTTCTGGAAT-CTGTAGTGTCGCTT-GCAATAGTGGAATTTATT-TCCAGAAACATGGGTAAAT 193 ACTTCTGTAATAC-GTAGTGTC-ATTCACAATAGTGGAATTCATTGTCC-GAGACATGGGTAAAT * * 79601081 GATATCTTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCATGGGTCGTTCGTCTTT 255 GATATCCTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCATGGGTCGTTTGTCTTT 79601146 GTGATGAATGAATGTGACTGACT-G-G 320 GTGATGAATGAATGTGACTGACTAGAG * 79601171 ACATCAGACTAGACCTAAAAAGAAGAGATCCTGAATCTGTTTATGGATTTATTCACTTGTGACAT 1 ACATCAGACTAGACCTAAAAAGAAGAGATCCTAAATCTGTTTATGGATTTATTCACTTGTGACAT * * * 79601236 TCAAAGTGTGGCATACCTTAATCCTCAATGGATGACGAAGTATGTATGCATGAGTCATATACATT 66 TCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACGAAGTATGTATGCATGACTCATATACATT * * 79601301 GATATAAGTAAAAGCCTGAGTTCAAATTGATAAGGAATTGAAGGCTAGTGCATTGGGTATACAAC 131 GATGTAAGTAAAAGCCTGAGTTCAAATTGATAAGGAATTGAAGGCT-GTGCATTGGGTATACGAC * * 79601366 TTCTGTAATACGTAGCGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGAGTAAATGATAT 195 TTCTGTAATACGTAGTGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGGGTAAATGATAT * * * * * 79601431 CCTTTCATTGGCATTACATGGTTGAGAAAAAGTAAACATGGCCACGAGTCGTTTATCTTTGTGAT 260 CCTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCATGGGTCGTTTGTCTTTGTGAT ** * 79601496 TTATGAATGTGACTGGCTAGACTG 325 GAATGAATGTGACTGACTAGA--G * 79601520 ACATTACATTAGACTAGACCTAAGAAA-AAGAGATCCTAAATCCGTTTATGGATTTATTCACTTG 1 ACA-T-C---AGACTAGACCTAA-AAAGAAGAGATCCTAAATCTGTTTATGGATTTATTCACTTG ** * * * * 79601584 TGACATTCAAAGTGTGGCATGTCTTAATCCTGAGTGGATGATG-GGCTATGTATGTATGACTCGT 60 TGACATTCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACGAAG-TATGTATGCATGACTCAT * * * 79601648 ATACATTGATGTAAGTAAAAGCTTGAGTTCAAAATGGTAAGGAATTGAAGGCTGATGCATTGGGT 124 ATACATTGATGTAAGTAAAAGCCTGAGTTCAAATTGATAAGGAATTGAAGGCTG-TGCATTGGGT * * * * * 79601713 ATACGACTTCTGTAATATGTAATGTCATCCACAATAGTGAAATTCATTGCCCGAGACATGGGTAA 188 ATACGACTTCTGTAATACGTAGTGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGGGTAA * * * * * * 79601778 ATGATATTCTTTCATCGACATTACATGGTTGATAGAAAGTAAATGTGGCCACT-GGTCATTTGTC 253 ATGATATCCTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCA-TGGGTCGTTTGTC 79601842 TTTGTGATGAATGA 317 TTTGTGATGAATGA 79601856 CTTGATTACT Statistics Matches: 594, Mismatches: 73, Indels: 27 0.86 0.11 0.04 Matches are distributed among these distances: 344 2 0.00 345 290 0.49 346 10 0.02 349 4 0.01 350 1 0.00 351 1 0.00 353 2 0.00 354 281 0.47 355 3 0.01 ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32 Consensus pattern (346 bp): ACATCAGACTAGACCTAAAAAGAAGAGATCCTAAATCTGTTTATGGATTTATTCACTTGTGACAT TCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACGAAGTATGTATGCATGACTCATATACATT GATGTAAGTAAAAGCCTGAGTTCAAATTGATAAGGAATTGAAGGCTGTGCATTGGGTATACGACT TCTGTAATACGTAGTGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGGGTAAATGATATC CTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCATGGGTCGTTTGTCTTTGTGATG AATGAATGTGACTGACTAGAG Found at i:79601677 original size:354 final size:346 Alignment explanation
Indices: 79600825--79601855 Score: 1308 Period size: 354 Copynumber: 3.0 Consensus size: 346 79600815 GGATTGAAAG * * * * 79600825 TACATCAGCCTAGACCCAAGAAGAAGATATCCTAAATCTGTTTATGGATTTATTCACTTGTGACA 1 TACAT-AGACTAGACCTAAGAAAAAGAGATCCTAAATCTGTTTATGGATTTATTCACTTGTGACA * * * * 79600890 TTCAAAGTGTGGCATACCTTAATCTTGAGTGGATGACAGACTATGTATGCGTGACTCATATACAT 65 TTCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACGGGCTATGTATGCATGACTCATATACAT * * * * * 79600955 AGATGTAAGCAAAA-TTCTAAGTTC-AATTAGATAAGGAATTGAAGGTTGGTGCATTGGGTATAC 130 TGATGTAAGTAAAAGCT-TGAGTTCAAATT-GATAAGGAATTGAAGGCT-GTGCATTGGGTATAC * * * * * 79601018 GACTTCTGGAAT-CTGTAGTGTCGCTT-GCAATAGTGGAATTTATT-TCCAGAAACATGGGTAAA 192 GACTTCTGTAATAC-GTAGTGTC-ATTCACAATAGTGGAATTCATTGTCC-GAGACATGGGTAAA * * * 79601080 TGATATCTTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCATGGGTCGTTCGTCTT 254 TGATATCCTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCA-CGGTCGTTTGTCTT 79601145 TGTGATGAATGAATGTGACTGACTGGACA 318 TGTGATGAATGAATGTGACTGACTGGACA * 79601174 T-C--AGACTAGACCTAA-AAAGAAGAGATCCTGAATCTGTTTATGGATTTATTCACTTGTGACA 1 TACATAGACTAGACCTAAGAAA-AAGAGATCCTAAATCTGTTTATGGATTTATTCACTTGTGACA * * * * 79601235 TTCAAAGTGTGGCATACCTTAATCCTCAATGGATGACGAAG-TATGTATGCATGAGTCATATACA 65 TTCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACG-GGCTATGTATGCATGACTCATATACA * * * 79601299 TTGATATAAGTAAAAGCCTGAGTTCAAATTGATAAGGAATTGAAGGCTAGTGCATTGGGTATACA 129 TTGATGTAAGTAAAAGCTTGAGTTCAAATTGATAAGGAATTGAAGGCT-GTGCATTGGGTATACG * * 79601364 ACTTCTGTAATACGTAGCGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGAGTAAATGAT 193 ACTTCTGTAATACGTAGTGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGGGTAAATGAT * * * 79601429 ATCCTTTCATTGGCATTACATGGTTGAGAAAAAGTAAACATGGCCACGAGTCGTTTATCTTTGTG 258 ATCCTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCACG-GTCGTTTGTCTTTGTG ** * 79601494 ATTTATGAATGTGACTGGCTAGACTGACA 322 ATGAATGAATGTGACTGACT-G---GACA * 79601523 TTACATTAGACTAGACCTAAGAAAAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGAC 1 -TACA-TAGACTAGACCTAAGAAAAAGAGATCCTAAATCTGTTTATGGATTTATTCACTTGTGAC ** * * * 79601588 ATTCAAAGTGTGGCATGTCTTAATCCTGAGTGGATGATGGGCTATGTATGTATGACTCGTATACA 64 ATTCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACGGGCTATGTATGCATGACTCATATACA * * 79601653 TTGATGTAAGTAAAAGCTTGAGTTCAAAATGGTAAGGAATTGAAGGCTGATGCATTGGGTATACG 129 TTGATGTAAGTAAAAGCTTGAGTTCAAATTGATAAGGAATTGAAGGCTG-TGCATTGGGTATACG * * * * * 79601718 ACTTCTGTAATATGTAATGTCATCCACAATAGTGAAATTCATTGCCCGAGACATGGGTAAATGAT 193 ACTTCTGTAATACGTAGTGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGGGTAAATGAT * * * * * * 79601783 ATTCTTTCATCGACATTACATGGTTGATAGAAAGTAAATGTGGCCACTGGTCATTTGTCTTTGTG 258 ATCCTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCAC-GGTCGTTTGTCTTTGTG 79601848 ATGAATGA 322 ATGAATGA 79601856 CTTGATTACT Statistics Matches: 589, Mismatches: 72, Indels: 37 0.84 0.10 0.05 Matches are distributed among these distances: 344 5 0.01 345 279 0.47 346 9 0.02 348 1 0.00 349 5 0.01 350 1 0.00 351 1 0.00 353 2 0.00 354 282 0.48 355 4 0.01 ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32 Consensus pattern (346 bp): TACATAGACTAGACCTAAGAAAAAGAGATCCTAAATCTGTTTATGGATTTATTCACTTGTGACAT TCAAAGTGTGGCATACCTTAATCCTGAGTGGATGACGGGCTATGTATGCATGACTCATATACATT GATGTAAGTAAAAGCTTGAGTTCAAATTGATAAGGAATTGAAGGCTGTGCATTGGGTATACGACT TCTGTAATACGTAGTGTCATTCACAATAGTGGAATTCATTGTCCGAGACATGGGTAAATGATATC CTTTCATTGGCATTACATGGTTGATAAAAAGTAAACGTGGCCACGGTCGTTTGTCTTTGTGATGA ATGAATGTGACTGACTGGACA Found at i:79603238 original size:42 final size:42 Alignment explanation
Indices: 79603178--79603289 Score: 143 Period size: 43 Copynumber: 2.6 Consensus size: 42 79603168 CTAAGATTAT * 79603178 GTGTAAGACCATATCTGGGATATGGCAGCGATATGAGACTTC 1 GTGTAAGACCATATCTGGGATATGGCAGCGATACGAGACTTC * * * * * 79603220 GTGTAAGACAATAACTGGGCTATTGGCATCGATACGAGATTTC 1 GTGTAAGACCATATCTGGGATA-TGGCAGCGATACGAGACTTC ** 79603263 ACGTAAGACCATATCTGGGATATGGCA 1 GTGTAAGACCATATCTGGGATATGGCA 79603290 TTTGTATGGT Statistics Matches: 58, Mismatches: 11, Indels: 2 0.82 0.15 0.03 Matches are distributed among these distances: 42 24 0.41 43 34 0.59 ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26 Consensus pattern (42 bp): GTGTAAGACCATATCTGGGATATGGCAGCGATACGAGACTTC Found at i:79605032 original size:16 final size:16 Alignment explanation
Indices: 79605011--79605068 Score: 82 Period size: 16 Copynumber: 3.6 Consensus size: 16 79605001 GGTTCACTGG * 79605011 AATGGAATAGGGTTGT 1 AATGGAATAGAGTTGT 79605027 AATGGAATAGAGTTGT 1 AATGGAATAGAGTTGT 79605043 AATGGAATA-AGTCTGT 1 AATGGAATAGAGT-TGT * 79605059 AATAGAATAG 1 AATGGAATAG 79605069 GGCTGTAATA Statistics Matches: 38, Mismatches: 2, Indels: 3 0.88 0.05 0.07 Matches are distributed among these distances: 15 3 0.08 16 35 0.92 ACGTcount: A:0.40, C:0.02, G:0.29, T:0.29 Consensus pattern (16 bp): AATGGAATAGAGTTGT Found at i:79605047 original size:32 final size:32 Alignment explanation
Indices: 79605011--79605077 Score: 82 Period size: 32 Copynumber: 2.1 Consensus size: 32 79605001 GGTTCACTGG * * * 79605011 AATGGAATAGGGT-TGTAATGGAATAGAGTTGT 1 AATGGAATA-AGTCTGTAATAGAATAGAGCTGT * 79605043 AATGGAATAAGTCTGTAATAGAATAGGGCTGT 1 AATGGAATAAGTCTGTAATAGAATAGAGCTGT 79605075 AAT 1 AAT 79605078 AAGTAATTCA Statistics Matches: 30, Mismatches: 4, Indels: 2 0.83 0.11 0.06 Matches are distributed among these distances: 31 2 0.07 32 28 0.93 ACGTcount: A:0.37, C:0.03, G:0.30, T:0.30 Consensus pattern (32 bp): AATGGAATAAGTCTGTAATAGAATAGAGCTGT Found at i:79605074 original size:16 final size:16 Alignment explanation
Indices: 79605015--79605078 Score: 65 Period size: 16 Copynumber: 4.0 Consensus size: 16 79605005 CACTGGAATG * * 79605015 GAATAGGGTTGTAATG 1 GAATAGGGCTGTAATA * * * 79605031 GAATAGAGTTGTAATG 1 GAATAGGGCTGTAATA * * 79605047 GAATAAGTCTGTAATA 1 GAATAGGGCTGTAATA 79605063 GAATAGGGCTGTAATA 1 GAATAGGGCTGTAATA 79605079 AGTAATTCAA Statistics Matches: 40, Mismatches: 8, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 16 40 1.00 ACGTcount: A:0.38, C:0.03, G:0.30, T:0.30 Consensus pattern (16 bp): GAATAGGGCTGTAATA Found at i:79619305 original size:16 final size:16 Alignment explanation
Indices: 79619284--79619347 Score: 58 Period size: 16 Copynumber: 3.9 Consensus size: 16 79619274 CACTCTAGCC 79619284 ATCACACGGCCGTGCG 1 ATCACACGGCCGTGCG * * 79619300 ATCACATGGTCGTGTC- 1 ATCACACGGCCGTG-CG 79619316 ATCGCACACGGCCGTGCG 1 AT--CACACGGCCGTGCG * * 79619334 ATAACACGGTCGTG 1 ATCACACGGCCGTG 79619348 TCATCATACA Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 16 24 0.63 17 2 0.05 18 12 0.32 ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19 Consensus pattern (16 bp): ATCACACGGCCGTGCG Found at i:79619329 original size:34 final size:34 Alignment explanation
Indices: 79619286--79619362 Score: 118 Period size: 34 Copynumber: 2.3 Consensus size: 34 79619276 CTCTAGCCAT * * * 79619286 CACACGGCCGTGCGATCACATGGTCGTGTCATCG 1 CACACGGCCGTGCGATAACACGGTCGTGTCATCA 79619320 CACACGGCCGTGCGATAACACGGTCGTGTCATCA 1 CACACGGCCGTGCGATAACACGGTCGTGTCATCA * 79619354 TACACGGCC 1 CACACGGCC 79619363 TACCACATGG Statistics Matches: 39, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 34 39 1.00 ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18 Consensus pattern (34 bp): CACACGGCCGTGCGATAACACGGTCGTGTCATCA Found at i:79631049 original size:16 final size:16 Alignment explanation
Indices: 79631028--79631059 Score: 55 Period size: 16 Copynumber: 2.0 Consensus size: 16 79631018 TCAGCAACTT * 79631028 GGGCAATCAAACCTTA 1 GGGCAACCAAACCTTA 79631044 GGGCAACCAAACCTTA 1 GGGCAACCAAACCTTA 79631060 CCTTCAATCG Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 16 15 1.00 ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16 Consensus pattern (16 bp): GGGCAACCAAACCTTA Found at i:79631357 original size:5 final size:5 Alignment explanation
Indices: 79631347--79631374 Score: 56 Period size: 5 Copynumber: 5.6 Consensus size: 5 79631337 GGATTTTGAA 79631347 AAAAT AAAAT AAAAT AAAAT AAAAT AAA 1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA 79631375 CAATAATTAT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 23 1.00 ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18 Consensus pattern (5 bp): AAAAT Found at i:79635285 original size:25 final size:25 Alignment explanation
Indices: 79635256--79635303 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 79635246 CCTTATAATG * * * 79635256 AAAATGACCGTTTTGCCCCTAGGTA 1 AAAATGACCATTATACCCCTAGGTA 79635281 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 79635304 GTTTATGTAT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25 Consensus pattern (25 bp): AAAATGACCATTATACCCCTAGGTA Found at i:79635384 original size:11 final size:11 Alignment explanation
Indices: 79635351--79635404 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 79635341 TATGGTATGT 79635351 ATGATATGCAC 1 ATGATATGCAC * 79635362 ATGA-ATG--T 1 ATGATATGCAC 79635370 ATGATATGCAC 1 ATGATATGCAC * 79635381 ATGATATG--T 1 ATGATATGCAC 79635390 ATGATATGCAC 1 ATGATATGCAC 79635401 ATGA 1 ATGA 79635405 GGTAATCATA Statistics Matches: 34, Mismatches: 4, Indels: 10 0.71 0.08 0.21 Matches are distributed among these distances: 8 4 0.12 9 11 0.32 10 3 0.09 11 16 0.47 ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31 Consensus pattern (11 bp): ATGATATGCAC Found at i:79635391 original size:20 final size:20 Alignment explanation
Indices: 79635346--79635404 Score: 111 Period size: 19 Copynumber: 3.0 Consensus size: 20 79635336 ATAAATATGG 79635346 TATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 79635366 -ATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 79635385 TATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 79635405 GGTAATCATA Statistics Matches: 38, Mismatches: 0, Indels: 2 0.95 0.00 0.05 Matches are distributed among these distances: 19 19 0.50 20 19 0.50 ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34 Consensus pattern (20 bp): TATGTATGATATGCACATGA Found at i:79635482 original size:24 final size:24 Alignment explanation
Indices: 79635455--79635573 Score: 170 Period size: 24 Copynumber: 5.0 Consensus size: 24 79635445 GAGGAAGTGA * 79635455 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATT 79635479 AAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATT 79635502 AAAAGGGCTTATGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * * 79635526 GAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * 79635550 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 79635574 ATGATAAAGC Statistics Matches: 86, Mismatches: 6, Indels: 5 0.89 0.06 0.05 Matches are distributed among these distances: 23 22 0.26 24 53 0.62 25 11 0.13 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (24 bp): AAAAGGGCTTATGCCCCAGTTATT Found at i:79635524 original size:47 final size:48 Alignment explanation
Indices: 79635455--79635573 Score: 170 Period size: 47 Copynumber: 2.5 Consensus size: 48 79635445 GAGGAAGTGA 79635455 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT ** * 79635502 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT * 79635550 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 79635574 ATGATAAAGC Statistics Matches: 65, Mismatches: 4, Indels: 4 0.89 0.05 0.05 Matches are distributed among these distances: 47 43 0.66 48 11 0.17 49 11 0.17 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (48 bp): AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT Found at i:79635824 original size:30 final size:31 Alignment explanation
Indices: 79635764--79635826 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 79635754 CGTTTACAGT 79635764 AAAGGCTTCGGCCCAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA ** 79635795 AAAGGCTTCGGCCCAGTGTTATG-AATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA 79635825 AA 1 AA 79635827 CATGAAAAGG Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 30 9 0.30 31 21 0.70 ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTAATATGAAATATGA Found at i:79643355 original size:25 final size:25 Alignment explanation
Indices: 79643327--79643374 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 79643317 TTATACCATG * * * 79643327 AAAATGACCGTTTTGCCCCTAGGTA 1 AAAATGACCATTATACCCCTAGGTA 79643352 AAAATGACCATTATACCCCTAGG 1 AAAATGACCATTATACCCCTAGG 79643375 GTTTATGTAT Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25 Consensus pattern (25 bp): AAAATGACCATTATACCCCTAGGTA Found at i:79643455 original size:11 final size:11 Alignment explanation
Indices: 79643422--79643475 Score: 55 Period size: 11 Copynumber: 5.4 Consensus size: 11 79643412 TATGGTATGT 79643422 ATGATATGCAC 1 ATGATATGCAC * 79643433 ATGA-ATG--T 1 ATGATATGCAC 79643441 ATGATATGCAC 1 ATGATATGCAC * 79643452 ATGATATG--T 1 ATGATATGCAC 79643461 ATGATATGCAC 1 ATGATATGCAC 79643472 ATGA 1 ATGA 79643476 GGTAATCATA Statistics Matches: 34, Mismatches: 4, Indels: 10 0.71 0.08 0.21 Matches are distributed among these distances: 8 4 0.12 9 11 0.32 10 3 0.09 11 16 0.47 ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31 Consensus pattern (11 bp): ATGATATGCAC Found at i:79643462 original size:20 final size:20 Alignment explanation
Indices: 79643417--79643475 Score: 111 Period size: 19 Copynumber: 3.0 Consensus size: 20 79643407 ATAAATATGG 79643417 TATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 79643437 -ATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 79643456 TATGTATGATATGCACATGA 1 TATGTATGATATGCACATGA 79643476 GGTAATCATA Statistics Matches: 38, Mismatches: 0, Indels: 2 0.95 0.00 0.05 Matches are distributed among these distances: 19 19 0.50 20 19 0.50 ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34 Consensus pattern (20 bp): TATGTATGATATGCACATGA Found at i:79643553 original size:24 final size:24 Alignment explanation
Indices: 79643526--79643644 Score: 170 Period size: 24 Copynumber: 5.0 Consensus size: 24 79643516 GAGGAAGTGA * 79643526 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATT 79643550 AAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATT 79643573 AAAAGGGCTTATGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * * 79643597 GAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATT * 79643621 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 79643645 ATGATAAAGC Statistics Matches: 86, Mismatches: 6, Indels: 5 0.89 0.06 0.05 Matches are distributed among these distances: 23 22 0.26 24 53 0.62 25 11 0.13 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (24 bp): AAAAGGGCTTATGCCCCAGTTATT Found at i:79643595 original size:47 final size:48 Alignment explanation
Indices: 79643526--79643644 Score: 170 Period size: 47 Copynumber: 2.5 Consensus size: 48 79643516 GAGGAAGTGA 79643526 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT ** * 79643573 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT 1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT * 79643621 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 79643645 ATGATAAAGC Statistics Matches: 65, Mismatches: 4, Indels: 4 0.89 0.05 0.05 Matches are distributed among these distances: 47 43 0.66 48 11 0.17 49 11 0.17 ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27 Consensus pattern (48 bp): AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT Found at i:79643896 original size:30 final size:31 Alignment explanation
Indices: 79643836--79643898 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 79643826 CGTTTACAGT 79643836 AAAGGCTTCGGCCCAGTAATATGAAATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA ** 79643867 AAAGGCTTCGGCCCAGTGTTATG-AATATGA 1 AAAGGCTTCGGCCCAGTAATATGAAATATGA 79643897 AA 1 AA 79643899 CATGAAAAGG Statistics Matches: 30, Mismatches: 2, Indels: 1 0.91 0.06 0.03 Matches are distributed among these distances: 30 9 0.30 31 21 0.70 ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24 Consensus pattern (31 bp): AAAGGCTTCGGCCCAGTAATATGAAATATGA Found at i:79645140 original size:42 final size:40 Alignment explanation
Indices: 79644987--79645141 Score: 132 Period size: 42 Copynumber: 3.7 Consensus size: 40 79644977 TATGAGCTTA * * 79644987 CGTGTAAGACCATATCTAGCATATGGCATC-ATTATGAGATTT 1 CGTGTAAGACCATATCTGGGATATGGCATCGA-TATGAGA--T * * * *** 79645029 CGTGTAAGACCATGTTTGGGACACAACATCGATATGAGAAT 1 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAG-AT * * 79645070 CGTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGAT 1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAT * * 79645111 CCCATATAAGACCATATCTGGGATATGGCAT 1 --CGTGTAAGACCATATCTGGGATATGGCAT 79645142 TGGTATGATT Statistics Matches: 88, Mismatches: 20, Indels: 10 0.75 0.17 0.08 Matches are distributed among these distances: 41 21 0.24 42 46 0.52 43 21 0.24 ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28 Consensus pattern (40 bp): CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGAT Found at i:79652219 original size:48 final size:47 Alignment explanation
Indices: 79652003--79652317 Score: 163 Period size: 48 Copynumber: 6.7 Consensus size: 47 79651993 GGTGTAATGC * * * * * * 79652003 CGATGCCATGTCCTAGACTTGGTCTTACACTGGCTCATCCATCAAGT- 1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAT-ACGTG * * * * 79652050 CGATGCCAT-ACTCCAGACATGGTCTTACACTGAC-TATCGAAATCAAG-G 1 CGATGCCATGTC-CCAGACATGGTCTTACACTGACACATC--TAT-ACGTG * * * * * * * 79652098 CTGACGCTATGTCCCAAATATGGTCTTACACTAGCTCTCA-CATATCCGTG 1 C-GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATC-TATACGTG * * * 79652148 CCGATGCCACGTCCCAAAAATGGTCTTACACTGACACATCTATACGTG 1 -CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGTG * * 79652196 ACGATGCCATGTCCCAGACATGGTCTTACTCTGACACATCTCATA-G-C 1 -CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCT-ATACGTG ** * 79652243 CGATG-CATGTCTGAGACAT-GTCTTACACTGGCTTACATCTCA-A-G-G 1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCT-ATACGTG 79652288 CTGATG-CATGTCCCAGACAT-GTCTTACACT 1 C-GATGCCATGTCCCAGACATGGTCTTACACT 79652318 AGCGTACAAA Statistics Matches: 216, Mismatches: 36, Indels: 33 0.76 0.13 0.12 Matches are distributed among these distances: 44 11 0.05 45 15 0.07 46 43 0.20 47 28 0.13 48 54 0.25 49 29 0.13 50 32 0.15 51 3 0.01 52 1 0.00 ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27 Consensus pattern (47 bp): CGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTATACGTG Found at i:79652283 original size:46 final size:44 Alignment explanation
Indices: 79652147--79652317 Score: 157 Period size: 46 Copynumber: 3.7 Consensus size: 44 79652137 ACATATCCGT * * * 79652147 GCCGATGCCACGTCCCAAAAATGGTCTTACACTGACACATCT-ATACG 1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCA-A-G * * 79652194 TGACGATGCCATGTCCCAGACATGGTCTTACTCTGACACATCTCATA- 1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCA-AG ** * 79652241 GCCGATGCATGTCTGAGACATGTCTTACACTGGCTTACATCTCAAG 1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCAAG * 79652287 GCTGATGCATGTCCCAGACATGTCTTACACT 1 GCCGATGCATGTCCCAGACATGTCTTACACT 79652318 AGCGTACAAA Statistics Matches: 106, Mismatches: 13, Indels: 10 0.82 0.10 0.08 Matches are distributed among these distances: 44 11 0.10 45 13 0.12 46 42 0.40 48 37 0.35 49 3 0.03 ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26 Consensus pattern (44 bp): GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCTCAAG Found at i:79658946 original size:50 final size:49 Alignment explanation
Indices: 79658887--79659027 Score: 174 Period size: 50 Copynumber: 2.8 Consensus size: 49 79658877 AGCCAAAACT * * 79658887 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCATC 1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTCAAC * * * * 79658937 ATCTGATACACGTAATAGCCTGCACTTAGTACTACACATGCGACTTAAC 1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCAAC * * * * 79658986 AGTATGATGCACGTAGTAGCCTACACTTAGTACTACAAACGT 1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT 79659028 ATATTCATAA Statistics Matches: 77, Mismatches: 13, Indels: 2 0.84 0.14 0.02 Matches are distributed among these distances: 49 5 0.06 50 72 0.94 ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26 Consensus pattern (49 bp): ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCAAC Found at i:79666405 original size:50 final size:49 Alignment explanation
Indices: 79666281--79666571 Score: 318 Period size: 50 Copynumber: 5.8 Consensus size: 49 79666271 AGCCGAAACT * * * * * 79666281 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-TCAAC 1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCATC 79666329 AATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCATC 1 -ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTCATC * 79666380 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTA 1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTC--A-TC * * * * * * * * 79666431 AT-TGAGTACGCATAATAGCCTGCACTTAGTACTACCCATGCGACTTAAC 1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCATC * * * 79666480 TGTATGATACACGTAGTAGCCTGCGCTTAGTACTACACACGTGACCTCATC 1 -ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CTCATC * * 79666531 ATTTGATACACGTAGTAGCCTACACTTAGTACTACACACGT 1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT 79666572 ATATTCACAA Statistics Matches: 203, Mismatches: 29, Indels: 19 0.81 0.12 0.08 Matches are distributed among these distances: 48 2 0.01 49 39 0.19 50 116 0.57 51 45 0.22 52 1 0.00 ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26 Consensus pattern (49 bp): ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTCATC Found at i:79666489 original size:101 final size:99 Alignment explanation
Indices: 79666284--79666570 Score: 310 Period size: 101 Copynumber: 2.9 Consensus size: 99 79666274 CGAAACTATC * * * * * * 79666284 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCAACAATCTGATACACGTAGTAGC 1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAACAATCTGATACACATAATAGC * * * 79666349 CTGCACTTAGTACTACACACGTGACCTCATCATC 66 CTGCACTTAGTACTACACACGCGACCTAATCATA * * 79666383 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTAAT-TGAGTACGCATAAT 1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-AA-CAATCTGA-TACACATAAT * * * * 79666447 AGCCTGCACTTAGTACTACCCATGCGACTTAA-CTGTA 63 AGCCTGCACTTAGTACTACACACGCGACCTAATC-ATA * * * * * 79666484 TGATACACGTAGTAGCCTGCGCTTAGTACTACACACGTGACCTCATC-ATTTGATACACGTAGTA 1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA--TCAACAATCTGATACACATAATA * 79666548 GCCTACACTTAGTACTACACACG 64 GCCTGCACTTAGTACTACACACG 79666571 TATATTCACA Statistics Matches: 157, Mismatches: 24, Indels: 13 0.81 0.12 0.07 Matches are distributed among these distances: 99 38 0.24 100 36 0.23 101 80 0.51 102 1 0.01 103 2 0.01 ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26 Consensus pattern (99 bp): TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAACAATCTGATACACATAATAGC CTGCACTTAGTACTACACACGCGACCTAATCATA Found at i:79666560 original size:151 final size:150 Alignment explanation
Indices: 79666287--79666571 Score: 480 Period size: 151 Copynumber: 1.9 Consensus size: 150 79666277 AACTATCTGA * * 79666287 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCAACAATCTGATACACGTAGTAGCCTG 1 TACGCATAATAGCCTGCACTTAGTACTACACATGCGATCAACAATATGATACACGTAGTAGCCTG * 79666352 CACTTAGTACTACACACGTGACCTCATCATCTGATACACGTAGTAGCCTGCACTTAGTACTACAC 66 CACTTAGTACTACACACGTGACCTCATCATCTGATACACGTAGTAGCCTACACTTAGTACTACAC 79666417 ACGTGATCGAAGTAATTGAG 131 ACGTGATCGAAGTAATTGAG * * ** 79666437 TACGCATAATAGCCTGCACTTAGTACTACCCATGCGACTTAACTGTATGATACACGTAGTAGCCT 1 TACGCATAATAGCCTGCACTTAGTACTACACATGCGA-TCAACAATATGATACACGTAGTAGCCT * * 79666502 GCGCTTAGTACTACACACGTGACCTCATCATTTGATACACGTAGTAGCCTACACTTAGTACTACA 65 GCACTTAGTACTACACACGTGACCTCATCATCTGATACACGTAGTAGCCTACACTTAGTACTACA 79666567 CACGT 130 CACGT 79666572 ATATTCACAA Statistics Matches: 125, Mismatches: 9, Indels: 1 0.93 0.07 0.01 Matches are distributed among these distances: 150 35 0.28 151 90 0.72 ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26 Consensus pattern (150 bp): TACGCATAATAGCCTGCACTTAGTACTACACATGCGATCAACAATATGATACACGTAGTAGCCTG CACTTAGTACTACACACGTGACCTCATCATCTGATACACGTAGTAGCCTACACTTAGTACTACAC ACGTGATCGAAGTAATTGAG Found at i:79674057 original size:52 final size:52 Alignment explanation
Indices: 79673974--79674079 Score: 194 Period size: 52 Copynumber: 2.0 Consensus size: 52 79673964 ATGCCTCAAG * * 79673974 GCAATTGAAACCGCATGAGAAAAATTATCCAACATATGATTTGGAGCTAGCC 1 GCAACTGAAACCGCATGAGAAAAATTATCCAACACATGATTTGGAGCTAGCC 79674026 GCAACTGAAACCGCATGAGAAAAATTATCCAACACATGATTTGGAGCTAGCC 1 GCAACTGAAACCGCATGAGAAAAATTATCCAACACATGATTTGGAGCTAGCC 79674078 GC 1 GC 79674080 CATTGTGTTT Statistics Matches: 52, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 52 52 1.00 ACGTcount: A:0.38, C:0.22, G:0.20, T:0.21 Consensus pattern (52 bp): GCAACTGAAACCGCATGAGAAAAATTATCCAACACATGATTTGGAGCTAGCC Found at i:79678637 original size:17 final size:18 Alignment explanation
Indices: 79678615--79678648 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 79678605 TCACATTGAA 79678615 GTGTTTT-AGTGAAAACT 1 GTGTTTTCAGTGAAAACT * 79678632 GTGTTTTCATTGAAAAC 1 GTGTTTTCAGTGAAAAC 79678649 CCTTCTTAAA Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 7 0.47 18 8 0.53 ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41 Consensus pattern (18 bp): GTGTTTTCAGTGAAAACT Found at i:79678839 original size:15 final size:15 Alignment explanation
Indices: 79678816--79678855 Score: 53 Period size: 15 Copynumber: 2.7 Consensus size: 15 79678806 CAACTTCTCG * * 79678816 TAATTATAATGAAAA 1 TAATAATAATCAAAA * 79678831 TAATAATAATCCAAA 1 TAATAATAATCAAAA 79678846 TAATAATAAT 1 TAATAATAAT 79678856 AATAAGGAAG Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 15 22 1.00 ACGTcount: A:0.60, C:0.05, G:0.03, T:0.33 Consensus pattern (15 bp): TAATAATAATCAAAA Found at i:79679790 original size:29 final size:29 Alignment explanation
Indices: 79679733--79679834 Score: 143 Period size: 29 Copynumber: 3.6 Consensus size: 29 79679723 TACCTGTATC * * * * 79679733 TGGCCCATTAAGCAC-AATCGTATTCATA 1 TGGCCCATTAGGCCCAAATCATATTTATA 79679761 TGGCCCATTAGGCCCAAATCATATTTATA 1 TGGCCCATTAGGCCCAAATCATATTTATA * 79679790 TGGCCCATTAGGCCCAAATCACATTTATA 1 TGGCCCATTAGGCCCAAATCATATTTATA * 79679819 TGGCCCGTTAGGCCCA 1 TGGCCCATTAGGCCCA 79679835 GTCACATTCA Statistics Matches: 67, Mismatches: 6, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 28 13 0.19 29 54 0.81 ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27 Consensus pattern (29 bp): TGGCCCATTAGGCCCAAATCATATTTATA Found at i:79680100 original size:16 final size:16 Alignment explanation
Indices: 79680058--79680100 Score: 52 Period size: 16 Copynumber: 2.7 Consensus size: 16 79680048 GTAGCCAAAC 79680058 TTTCAGCTTTTCGGCA 1 TTTCAGCTTTTCGGCA * 79680074 TTTC-GACTTTTCGGTA 1 TTTCAG-CTTTTCGGCA * 79680090 TTTCAGGTTTT 1 TTTCAGCTTTT 79680101 GCTGATACAT Statistics Matches: 23, Mismatches: 2, Indels: 4 0.79 0.07 0.14 Matches are distributed among these distances: 15 1 0.04 16 21 0.91 17 1 0.04 ACGTcount: A:0.12, C:0.19, G:0.19, T:0.51 Consensus pattern (16 bp): TTTCAGCTTTTCGGCA Found at i:79681846 original size:25 final size:25 Alignment explanation
Indices: 79681812--79681931 Score: 197 Period size: 25 Copynumber: 4.8 Consensus size: 25 79681802 CTCTTTTAAT * 79681812 AACTGGGGCAAAGCCCTTTTTGATA 1 AACTGGGGCAAAGCCCTTTTCGATA 79681837 AACTGGGGCAAAGCCCTTTTC-AGTA 1 AACTGGGGCAAAGCCCTTTTCGA-TA * 79681862 AACTGGGGCAAAGCCCTTTTCGGTA 1 AACTGGGGCAAAGCCCTTTTCGATA * 79681887 AACTAGGGCAAAGCCCTTTTCGATA 1 AACTGGGGCAAAGCCCTTTTCGATA 79681912 AACTGGGGCAAAGCCCTTTT 1 AACTGGGGCAAAGCCCTTTT 79681932 AGCACTTCCT Statistics Matches: 88, Mismatches: 5, Indels: 4 0.91 0.05 0.04 Matches are distributed among these distances: 24 1 0.01 25 87 0.99 ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25 Consensus pattern (25 bp): AACTGGGGCAAAGCCCTTTTCGATA Found at i:79682166 original size:27 final size:27 Alignment explanation
Indices: 79682136--79682353 Score: 292 Period size: 27 Copynumber: 8.1 Consensus size: 27 79682126 GGCAAAATGA * * * * 79682136 TAATTTTACCCCACATGGGTATCTCGG 1 TAATTCTACCCTACAGGGGTATTTCGG * 79682163 TAATTCTACCCTACAGGGGTATTTTGG 1 TAATTCTACCCTACAGGGGTATTTCGG * * * 79682190 TATTTTTACCCTACAAGGGTATTTCGG 1 TAATTCTACCCTACAGGGGTATTTCGG ** 79682217 TAATTCTACCCTACAGGGGTATTTTAG 1 TAATTCTACCCTACAGGGGTATTTCGG * * 79682244 TAATTCTACCTTACAGGGGTATTTCAG 1 TAATTCTACCCTACAGGGGTATTTCGG 79682271 TAATTCTACCCTACAGGGGTATTTCGG 1 TAATTCTACCCTACAGGGGTATTTCGG * * * 79682298 TATTTCTACCCTACAAGGGTATTTCAG 1 TAATTCTACCCTACAGGGGTATTTCGG * 79682325 TAATTCTACCCTACAGGAGTATTTCGG 1 TAATTCTACCCTACAGGGGTATTTCGG 79682352 TA 1 TA 79682354 TTTTACAAAT Statistics Matches: 166, Mismatches: 25, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 27 166 1.00 ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36 Consensus pattern (27 bp): TAATTCTACCCTACAGGGGTATTTCGG Found at i:79682252 original size:22 final size:25 Alignment explanation
Indices: 79682152--79682409 Score: 158 Period size: 27 Copynumber: 9.6 Consensus size: 25 79682142 TACCCCACAT * * 79682152 GGGTATCTCGGTAATTCTACCCTACAG 1 GGGTATTTCAGTAATTCTA--CTACAG ** * * * 79682179 GGGTATTTTGGTATTTTTACCCTACAA 1 GGGTATTTCAGTAATTCTA--CTACAG * 79682206 GGGTATTTCGGTAATTCTACCCTACAG 1 GGGTATTTCAGTAATTCTA--CTACAG * 79682233 GGGTATTTTAGTAATTCTACCTTACAG 1 GGGTATTTCAGTAATTCTA-C-TACAG 79682260 GGGTATTTCAGTAATTCTACCCTACAG 1 GGGTATTTCAGTAATTCTA--CTACAG * * * 79682287 GGGTATTTCGGTATTTCTACCCTACAA 1 GGGTATTTCAGTAATTCTA--CTACAG 79682314 GGGTATTTCAGTAATTCTACCCTACAG 1 GGGTATTTCAGTAATTCTA--CTACAG * * * * * 79682341 GAGTATTTCGGT-ATTTTACAAATCAA 1 GGGTATTTCAGTAATTCTAC-TA-CAG * * * 79682367 GGGTATTTTAGTAATTTTACAAACTAG 1 GGGTATTTCAGTAATTCTAC-TAC-AG * 79682394 GGGTATTTTAGTAATT 1 GGGTATTTCAGTAATT 79682410 TTACAAACCA Statistics Matches: 198, Mismatches: 27, Indels: 12 0.84 0.11 0.05 Matches are distributed among these distances: 24 1 0.01 25 1 0.01 26 19 0.10 27 175 0.88 28 2 0.01 ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38 Consensus pattern (25 bp): GGGTATTTCAGTAATTCTACTACAG Found at i:79682281 original size:81 final size:81 Alignment explanation
Indices: 79682162--79682463 Score: 310 Period size: 81 Copynumber: 3.7 Consensus size: 81 79682152 GGGTATCTCG * * 79682162 GTAATTCTACCCTACAGGGGTATTTTGGTATTTTTACCCTACAAGGGTATTTCGGTAATTCTACC 1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACC 79682227 CTACAGGGGTATTTTA 66 CTACAGGGGTATTTTA * * * * * 79682243 GTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACC 1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACC * * 79682308 CTACAAGGGTATTTCA 66 CTACAGGGGTATTTTA * ** ** * 79682324 GTAATTCTACCCTACAGGAGTATTTCGGT-ATTTTA-CAAATCAAGGGTATTTTAGTAATTTTA- 1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTA-CAAGGGTATTTCGGTAATTCTAC ** 79682386 CAAACTAGGGGTATTTTA 65 CCTAC-AGGGGTATTTTA * ** * * * 79682404 GTAATTTTA-CAAACCAGGAGTATTTTGGTAATTTTA--CTGATCAAGGGTATTTTGGTAATT 1 GTAATTCTACCCTA-CAGGGGTATTTCGGTAATTTTACCCT-A-CAAGGGTATTTCGGTAATT 79682464 TTTTAAACCA Statistics Matches: 185, Mismatches: 31, Indels: 10 0.82 0.14 0.04 Matches are distributed among these distances: 79 7 0.04 80 54 0.29 81 124 0.67 ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38 Consensus pattern (81 bp): GTAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACC CTACAGGGGTATTTTA Found at i:79682347 original size:54 final size:53 Alignment explanation
Indices: 79682138--79682382 Score: 312 Period size: 54 Copynumber: 4.6 Consensus size: 53 79682128 CAAAATGATA * * * * * 79682138 ATTTTACCCCACATGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTTGGT 1 ATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT * ** 79682191 ATTTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGT 1 A-TTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT * * * 79682245 AATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT 1 -ATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT * 79682299 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTCGGT 1 ATTT-TACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT ** * 79682353 ATTTTA-CAAATCAAGGGTATTTTAGTAATT 1 ATTTTACCCTA-CAAGGGTATTTCAGTAATT 79682383 TTACAAACTA Statistics Matches: 171, Mismatches: 17, Indels: 8 0.87 0.09 0.04 Matches are distributed among these distances: 52 2 0.01 53 24 0.14 54 144 0.84 55 1 0.01 ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37 Consensus pattern (53 bp): ATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGT Found at i:79682385 original size:27 final size:27 Alignment explanation
Indices: 79682353--79682506 Score: 168 Period size: 27 Copynumber: 5.7 Consensus size: 27 79682343 GTATTTCGGT 79682353 ATTTTACAAATCAAGGGTATTTTAGTA 1 ATTTTACAAATCAAGGGTATTTTAGTA * 79682380 ATTTTACAAA-CTAGGGGTATTTTAGTA 1 ATTTTACAAATC-AAGGGTATTTTAGTA * * 79682407 ATTTTACAAA-CCAGGAGTATTTTGGTA 1 ATTTTACAAATCAAGG-GTATTTTAGTA ** * 79682434 ATTTTACTGATCAAGGGTATTTTGGTA 1 ATTTTACAAATCAAGGGTATTTTAGTA ** * 79682461 ATTTTTTAAACCAAGGGTATTTTAGTA 1 ATTTTACAAATCAAGGGTATTTTAGTA ** * 79682488 ATTTTGTAAATCGAGGGTA 1 ATTTTACAAATCAAGGGTA 79682507 AAACGATAAT Statistics Matches: 108, Mismatches: 16, Indels: 6 0.83 0.12 0.05 Matches are distributed among these distances: 26 3 0.03 27 101 0.94 28 4 0.04 ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41 Consensus pattern (27 bp): ATTTTACAAATCAAGGGTATTTTAGTA Found at i:79682464 original size:81 final size:80 Alignment explanation
Indices: 79682311--79682492 Score: 231 Period size: 81 Copynumber: 2.3 Consensus size: 80 79682301 TTCTACCCTA * * ** 79682311 CAAGGGTATTTCAGTAATTCTACCCTA-CAGGAGTATTTCGGTATTTTACAAATCAAGGGTATTT 1 CAAGGGTATTTTAGTAATTTTA-CAAACCAGGAGTATTTCGGTATTTTACAAATCAAGGGTATTT 79682375 TAGTAATTTTACAAAC 65 TAGTAATTTTACAAAC * * * ** 79682391 TAGGGGTATTTTAGTAATTTTACAAACCAGGAGTATTTTGGTAATTTTACTGATCAAGGGTATTT 1 CAAGGGTATTTTAGTAATTTTACAAACCAGGAGTATTTCGGT-ATTTTACAAATCAAGGGTATTT * ** 79682456 TGGTAATTTTTTAAAC 65 TAGTAATTTTACAAAC 79682472 CAAGGGTATTTTAGTAATTTT 1 CAAGGGTATTTTAGTAATTTT 79682493 GTAAATCGAG Statistics Matches: 86, Mismatches: 14, Indels: 3 0.83 0.14 0.03 Matches are distributed among these distances: 79 2 0.02 80 32 0.37 81 52 0.60 ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41 Consensus pattern (80 bp): CAAGGGTATTTTAGTAATTTTACAAACCAGGAGTATTTCGGTATTTTACAAATCAAGGGTATTTT AGTAATTTTACAAAC Found at i:79682516 original size:27 final size:27 Alignment explanation
Indices: 79682485--79682584 Score: 173 Period size: 27 Copynumber: 3.7 Consensus size: 27 79682475 GGGTATTTTA * 79682485 GTAATTTTGTAAATCGAGGGTAAAACG 1 GTAATTCTGTAAATCGAGGGTAAAACG * 79682512 ATAATTCTGTAAATCGAGGGTAAAACG 1 GTAATTCTGTAAATCGAGGGTAAAACG 79682539 GTAATTCTGTAAATCGAGGGTAAAACG 1 GTAATTCTGTAAATCGAGGGTAAAACG * 79682566 GTAATTCTATAAATCGAGG 1 GTAATTCTGTAAATCGAGG 79682585 ATATTTGGGT Statistics Matches: 69, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 27 69 1.00 ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28 Consensus pattern (27 bp): GTAATTCTGTAAATCGAGGGTAAAACG Found at i:79686921 original size:29 final size:29 Alignment explanation
Indices: 79686857--79686964 Score: 112 Period size: 29 Copynumber: 3.8 Consensus size: 29 79686847 TTCACATACC * * ** 79686857 TGTATCTGGCCCATTAAGCCC-AATCGTA 1 TGTATATGGCCCATTAGGCCCAAATCACA * 79686885 T-TCATATGGCCCATTAGGCCCAAATCACC 1 TGT-ATATGGCCCATTAGGCCCAAATCACA * 79686914 TGTATATGGCCCATTAGGCTCAAATCACA 1 TGTATATGGCCCATTAGGCCCAAATCACA * ** 79686943 TTTATATGGCCTGTTAGGCCCA 1 TGTATATGGCCCATTAGGCCCA 79686965 GTCACATTCA Statistics Matches: 66, Mismatches: 11, Indels: 5 0.80 0.13 0.06 Matches are distributed among these distances: 27 1 0.02 28 17 0.26 29 47 0.71 30 1 0.02 ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29 Consensus pattern (29 bp): TGTATATGGCCCATTAGGCCCAAATCACA Found at i:79687214 original size:16 final size:16 Alignment explanation
Indices: 79687193--79687230 Score: 76 Period size: 16 Copynumber: 2.4 Consensus size: 16 79687183 AAAACTTTCA 79687193 GCTTTTCGGCGTTTTG 1 GCTTTTCGGCGTTTTG 79687209 GCTTTTCGGCGTTTTG 1 GCTTTTCGGCGTTTTG 79687225 GCTTTT 1 GCTTTT 79687231 GCCGATACAT Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 16 22 1.00 ACGTcount: A:0.00, C:0.18, G:0.29, T:0.53 Consensus pattern (16 bp): GCTTTTCGGCGTTTTG Found at i:79688412 original size:17 final size:17 Alignment explanation
Indices: 79688373--79688408 Score: 56 Period size: 16 Copynumber: 2.2 Consensus size: 17 79688363 ACAAAAAAAG * 79688373 TTTGGGATTTCGAGATT 1 TTTGGGATTTAGAGATT 79688390 TTTGGG-TTTAGAGATT 1 TTTGGGATTTAGAGATT 79688406 TTT 1 TTT 79688409 TGGGCGTTAC Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 16 12 0.67 17 6 0.33 ACGTcount: A:0.17, C:0.03, G:0.28, T:0.53 Consensus pattern (17 bp): TTTGGGATTTAGAGATT Found at i:79694696 original size:42 final size:42 Alignment explanation
Indices: 79694627--79694790 Score: 154 Period size: 42 Copynumber: 3.9 Consensus size: 42 79694617 CATTAGGGCA * * * 79694627 ATGAG-TTTACGTGCAAAACCATATCTAGGATATGGCATCGTT 1 ATGAGATTT-CGTGTAAGACCATATCTAGGATATGGCATCGAT * * 79694669 ATGAGATTTCGTGTAAGACCATTTCTAGGACATGGCATCGAT 1 ATGAGATTTCGTGTAAGACCATATCTAGGATATGGCATCGAT * * * * 79694711 ATGAGA-ATCGTGTAAGACCATAGCTAGGCTATTGGCATCGGT 1 ATGAGATTTCGTGTAAGACCATATCTAGGATA-TGGCATCGAT ** * * * 79694753 ATGAGATCCCATGTAAGACTATAT-TGGGGATATGGCAT 1 ATGAGATTTCGTGTAAGACCATATCT-AGGATATGGCAT 79694791 TGGTACGCTT Statistics Matches: 100, Mismatches: 18, Indels: 8 0.79 0.14 0.06 Matches are distributed among these distances: 41 20 0.20 42 61 0.61 43 19 0.19 ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29 Consensus pattern (42 bp): ATGAGATTTCGTGTAAGACCATATCTAGGATATGGCATCGAT Found at i:79697004 original size:20 final size:20 Alignment explanation
Indices: 79696979--79697016 Score: 58 Period size: 20 Copynumber: 1.9 Consensus size: 20 79696969 TCACGTTTAG * 79696979 GCTATGACTCAACCTAGGTT 1 GCTATGACTCAACATAGGTT * 79696999 GCTATGGCTCAACATAGG 1 GCTATGACTCAACATAGG 79697017 GTGTGTGTTG Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 20 16 1.00 ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26 Consensus pattern (20 bp): GCTATGACTCAACATAGGTT Found at i:79698561 original size:93 final size:93 Alignment explanation
Indices: 79698449--79698620 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 79698439 GCCCATAAGT * * 79698449 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 79698514 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 79698542 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 79698607 CGAGTTCGGATGCC 66 CGAGTTCGGATGCC 79698621 CAAATATCCA Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:79698616 original size:46 final size:46 Alignment explanation
Indices: 79698441--79698616 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 79698431 TGTAACCCGC * * * 79698441 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT * * 79698487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT * * 79698537 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 79698580 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 79698617 TGCCCAAATA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 3 0.03 44 1 0.01 45 2 0.02 46 68 0.61 47 32 0.29 48 2 0.02 49 1 0.01 50 3 0.03 ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT Found at i:79701040 original size:30 final size:30 Alignment explanation
Indices: 79700996--79701084 Score: 101 Period size: 30 Copynumber: 3.0 Consensus size: 30 79700986 CAAAGATAAC 79700996 AAGAAAACC-GAATAAAGAAATCCAAGATA 1 AAGAAAACCAGAATAAAGAAATCCAAGATA * * 79701025 GAGAAACCCAGAATAAAGAAATCC-AGAATA 1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA * * * * 79701055 AAGAGATCCAGGATAAAGAAACCCAAGATA 1 AAGAAAACCAGAATAAAGAAATCCAAGATA 79701085 CGATACTATG Statistics Matches: 50, Mismatches: 7, Indels: 5 0.81 0.11 0.08 Matches are distributed among these distances: 29 9 0.18 30 39 0.78 31 2 0.04 ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10 Consensus pattern (30 bp): AAGAAAACCAGAATAAAGAAATCCAAGATA Found at i:79701044 original size:15 final size:15 Alignment explanation
Indices: 79700996--79701075 Score: 92 Period size: 15 Copynumber: 5.4 Consensus size: 15 79700986 CAAAGATAAC * 79700996 AAGAAAACC-GAATA 1 AAGAAATCCAGAATA 79701010 AAGAAATCCA-AGATA 1 AAGAAATCCAGA-ATA * * 79701025 GAGAAACCCAGAATA 1 AAGAAATCCAGAATA 79701040 AAGAAATCCAGAATA 1 AAGAAATCCAGAATA * * 79701055 AAGAGATCCAGGATA 1 AAGAAATCCAGAATA 79701070 AAGAAA 1 AAGAAA 79701076 CCCAAGATAC Statistics Matches: 55, Mismatches: 8, Indels: 5 0.81 0.12 0.07 Matches are distributed among these distances: 14 9 0.16 15 45 0.82 16 1 0.02 ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10 Consensus pattern (15 bp): AAGAAATCCAGAATA Found at i:79701084 original size:15 final size:15 Alignment explanation
Indices: 79701007--79701084 Score: 79 Period size: 15 Copynumber: 5.2 Consensus size: 15 79700997 AGAAAACCGA 79701007 ATAAAGAAATCCAAG 1 ATAAAGAAATCCAAG * * 79701022 ATAGAGAAA-CCCAG 1 ATAAAGAAATCCAAG 79701036 AATAAAGAAATCC-AG 1 -ATAAAGAAATCCAAG * * 79701051 AATAAAGAGATCCAGG 1 -ATAAAGAAATCCAAG * 79701067 ATAAAGAAACCCAAG 1 ATAAAGAAATCCAAG 79701082 ATA 1 ATA 79701085 CGATACTATG Statistics Matches: 52, Mismatches: 8, Indels: 6 0.79 0.12 0.09 Matches are distributed among these distances: 14 4 0.08 15 45 0.87 16 3 0.06 ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12 Consensus pattern (15 bp): ATAAAGAAATCCAAG Found at i:79704108 original size:93 final size:93 Alignment explanation
Indices: 79703996--79704167 Score: 317 Period size: 93 Copynumber: 1.8 Consensus size: 93 79703986 GCCCATAAGT * * 79703996 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 79704061 CGAGTTCGGATGCCTAGTTACATCTCAC 66 CGAGTTCGGATGCCTAGTTACATCTCAC * 79704089 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA 79704154 CGAGTTCGGATGCC 66 CGAGTTCGGATGCC 79704168 CAAATATCCA Statistics Matches: 76, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 93 76 1.00 ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20 Consensus pattern (93 bp): GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA CGAGTTCGGATGCCTAGTTACATCTCAC Found at i:79704163 original size:46 final size:46 Alignment explanation
Indices: 79703988--79704163 Score: 232 Period size: 46 Copynumber: 3.8 Consensus size: 46 79703978 TGTAACCCGC * * * 79703988 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT * * 79704034 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT * * 79704084 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT 79704127 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA 79704164 TGCCCAAATA Statistics Matches: 112, Mismatches: 11, Indels: 14 0.82 0.08 0.10 Matches are distributed among these distances: 43 3 0.03 44 1 0.01 45 2 0.02 46 68 0.61 47 32 0.29 48 2 0.02 49 1 0.01 50 3 0.03 ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20 Consensus pattern (46 bp): CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT Found at i:79708372 original size:46 final size:46 Alignment explanation
Indices: 79708224--79708383 Score: 182 Period size: 46 Copynumber: 3.5 Consensus size: 46 79708214 ACTAACCCAT * 79708224 ACTCAACTCAACGAGCTCGGACGTTCGCATCCATCAGTGAACTCGG 1 ACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGTGAACTCGG ** * 79708270 ACTCAACTCAACGAGCTCGGATGCATAGTTACAT-C-TCAG-GAACTTGG 1 ACTCAACTCAACGAGCTCGGA--CAT--TCGCATCCATCAGTGAACTCGG * * * 79708317 ACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGG 1 ACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGTGAACTCGG * * 79708363 ACTCAACTCAACAAGTTCGGA 1 ACTCAACTCAACGAGCTCGGA 79708384 TGCCCAAATA Statistics Matches: 95, Mismatches: 12, Indels: 14 0.79 0.10 0.12 Matches are distributed among these distances: 43 4 0.04 44 1 0.01 45 6 0.06 46 47 0.49 47 26 0.27 48 6 0.06 49 1 0.01 50 4 0.04 ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21 Consensus pattern (46 bp): ACTCAACTCAACGAGCTCGGACATTCGCATCCATCAGTGAACTCGG Found at i:79708839 original size:29 final size:30 Alignment explanation
Indices: 79708806--79708864 Score: 77 Period size: 30 Copynumber: 2.0 Consensus size: 30 79708796 CCCTAATATG * 79708806 AACTTTGGCA-AATTAC-CATTTTGCCCCTA 1 AACTTTGGCATAATTACAC-TTTTCCCCCTA * 79708835 AACTTTTGCATAATTACACTTTTCCCCCTA 1 AACTTTGGCATAATTACACTTTTCCCCCTA 79708865 GGCTCGGGAA Statistics Matches: 26, Mismatches: 2, Indels: 3 0.84 0.06 0.10 Matches are distributed among these distances: 29 9 0.35 30 16 0.62 31 1 0.04 ACGTcount: A:0.27, C:0.29, G:0.07, T:0.37 Consensus pattern (30 bp): AACTTTGGCATAATTACACTTTTCCCCCTA Found at i:79716772 original size:31 final size:31 Alignment explanation
Indices: 79716734--79716812 Score: 149 Period size: 31 Copynumber: 2.5 Consensus size: 31 79716724 TTTAACAGTT 79716734 ACTGGGCCGAAGCCTTTTCATAAATCAAATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * 79716765 ACTGGGCCGAAGCCTTTTCATAAATCATATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC 79716796 ACTGGGCCGAAGCCTTT 1 ACTGGGCCGAAGCCTTT 79716813 ATTGTAAACG Statistics Matches: 47, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 31 47 1.00 ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27 Consensus pattern (31 bp): ACTGGGCCGAAGCCTTTTCATAAATCAAATC Found at i:79718541 original size:40 final size:39 Alignment explanation
Indices: 79718484--79718689 Score: 232 Period size: 40 Copynumber: 5.2 Consensus size: 39 79718474 ATTAAATGAT * * * * 79718484 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA * * * * 79718524 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTAA * 79718564 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTAA * ** 79718604 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA * * * 79718644 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA 79718684 ATCCGG 1 ATCCGG 79718690 TTGTATTCCG Statistics Matches: 143, Mismatches: 20, Indels: 6 0.85 0.12 0.04 Matches are distributed among these distances: 39 2 0.01 40 139 0.97 41 2 0.01 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25 Consensus pattern (39 bp): ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTAA Found at i:79718620 original size:80 final size:80 Alignment explanation
Indices: 79718483--79718689 Score: 256 Period size: 80 Copynumber: 2.6 Consensus size: 80 79718473 AATTAAATGA * * ** * * 79718483 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA * 79718548 TTGTGCTAGT-G-AC 66 TTGTGCAAGTCGTAC * * 79718561 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC 1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC * * 79718626 ATTTGTGCAAGTCGTTC 64 AATTGTGCAAGTCGTAC * * * 79718643 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG 79718690 TTGTATTCCG Statistics Matches: 111, Mismatches: 14, Indels: 6 0.85 0.11 0.05 Matches are distributed among these distances: 78 1 0.01 80 107 0.96 81 1 0.01 82 2 0.02 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25 Consensus pattern (80 bp): TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA TTGTGCAAGTCGTAC Found at i:79726508 original size:40 final size:39 Alignment explanation
Indices: 79726451--79726636 Score: 219 Period size: 40 Copynumber: 4.6 Consensus size: 39 79726441 ATTAAATGAT * * * 79726451 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA * * * 79726491 ATCCGGGTTAAGACCCGAAGGCAATTTATGCTAGTGACTAA 1 ATCCGGGCTAAGACCCGAAGGC-ATTTATGCAAGTG-TTAA ** 79726532 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA * * ** 79726572 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT 1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA 79726612 ATCCGGGCTAAGACCCGAAGGCATT 1 ATCCGGGCTAAGACCCGAAGGCATT 79726637 CGTGCATGTG Statistics Matches: 128, Mismatches: 14, Indels: 8 0.85 0.09 0.05 Matches are distributed among these distances: 39 1 0.01 40 89 0.70 41 38 0.30 ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24 Consensus pattern (39 bp): ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA Found at i:79726588 original size:81 final size:80 Alignment explanation
Indices: 79726450--79726642 Score: 246 Period size: 81 Copynumber: 2.4 Consensus size: 80 79726440 AATTAAATGA * * ** * * 79726450 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC-A * 79726515 TTTATGCTAGT-G-AC 65 TTTATGCAAGTCGTAC * * 79726529 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC 1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC * * 79726594 ATTTGTGCAAGTCGTTC 64 ATTTATGCAAGTCGTAC 79726611 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA 79726643 TGTGGTATAT Statistics Matches: 99, Mismatches: 11, Indels: 7 0.85 0.09 0.06 Matches are distributed among these distances: 79 1 0.01 80 41 0.41 81 55 0.56 82 2 0.02 ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24 Consensus pattern (80 bp): TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAT TTATGCAAGTCGTAC Found at i:79734498 original size:40 final size:39 Alignment explanation
Indices: 79734365--79734567 Score: 205 Period size: 40 Copynumber: 5.2 Consensus size: 39 79734355 AATTAATGAT * * ** * * 79734365 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTA 1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA * * * 79734404 ATCCGGGTTAAGACCCGAAGGCAATT--TGCTAG-TGACTA 1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTA 79734442 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA 1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT-A * * * * 79734482 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT 1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT-A * * 79734522 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTA 1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA 79734561 TATCCGG 1 -ATCCGG 79734568 TTGTATTCCG Statistics Matches: 139, Mismatches: 18, Indels: 13 0.82 0.11 0.08 Matches are distributed among these distances: 37 4 0.03 38 29 0.21 39 25 0.18 40 81 0.58 ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25 Consensus pattern (39 bp): ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA Found at i:79734508 original size:77 final size:81 Alignment explanation
Indices: 79734364--79734567 Score: 240 Period size: 80 Copynumber: 2.6 Consensus size: 81 79734354 CAATTAATGA * * ** * * 79734364 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT-AATCCGGGTTAAGACCCGAAGGCAA 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA * 79734428 -TT-TGCTAGT-G-AC 66 TTTGTGCAAGTCGTAC * * 79734440 TAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC- 1 T-ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCA * 79734504 ATTTGTGCAAGTCGTTC 65 ATTTGTGCAAGTCGTAC * * * 79734521 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG 79734568 TTGTATTCCG Statistics Matches: 109, Mismatches: 13, Indels: 8 0.84 0.10 0.06 Matches are distributed among these distances: 76 1 0.01 77 33 0.30 78 23 0.21 79 6 0.06 80 44 0.40 81 2 0.02 ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25 Consensus pattern (81 bp): TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA TTTGTGCAAGTCGTAC Found at i:79742352 original size:40 final size:39 Alignment explanation
Indices: 79742295--79742498 Score: 214 Period size: 40 Copynumber: 5.2 Consensus size: 39 79742285 ATTAAATGAT * * * * 79742295 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA * * * * 79742335 ATCCGGGTTAAGACCCGAAGGCA-AT-TGCTAGTGACTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTAA * 79742373 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTAA * ** 79742413 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA * * * 79742453 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT 1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA 79742493 ATCCGG 1 ATCCGG 79742499 TTGTATTCCG Statistics Matches: 140, Mismatches: 19, Indels: 10 0.83 0.11 0.06 Matches are distributed among these distances: 37 1 0.01 38 32 0.23 39 2 0.01 40 103 0.74 41 2 0.01 ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25 Consensus pattern (39 bp): ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTAA Found at i:79742429 original size:78 final size:80 Alignment explanation
Indices: 79742294--79742498 Score: 238 Period size: 78 Copynumber: 2.6 Consensus size: 80 79742284 AATTAAATGA * * ** * * 79742294 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCA- 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAT * 79742358 AT-TGCTAGT-G-AC 66 ATGTGCAAGTCGTAC * * 79742370 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC 1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC * * 79742435 ATTTGTGCAAGTCGTTC 64 ATATGTGCAAGTCGTAC * * * 79742452 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG 1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG 79742499 TTGTATTCCG Statistics Matches: 109, Mismatches: 14, Indels: 8 0.83 0.11 0.06 Matches are distributed among these distances: 76 1 0.01 78 55 0.50 79 1 0.01 80 49 0.45 81 1 0.01 82 2 0.02 ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25 Consensus pattern (80 bp): TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAT ATGTGCAAGTCGTAC Found at i:79744136 original size:26 final size:26 Alignment explanation
Indices: 79744059--79744181 Score: 160 Period size: 26 Copynumber: 4.8 Consensus size: 26 79744049 CCTCTTTAAT * *** 79744059 AACTAGGGCA-AAGCCCTTTTTGGTA 1 AACTGGGGCATAAGCCCTTTTCAATA * 79744084 AACTGGGGCA-AAGCCCTTTCCAATA 1 AACTGGGGCATAAGCCCTTTTCAATA ** 79744109 AACTGGGGCATAAGCCCTTTTCGGTA 1 AACTGGGGCATAAGCCCTTTTCAATA 79744135 AACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCAATA * 79744161 AACTGAGGCATAAGCCCTTTT 1 AACTGGGGCATAAGCCCTTTT 79744182 GCACTTCCTC Statistics Matches: 86, Mismatches: 11, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 25 30 0.35 26 56 0.65 ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26 Consensus pattern (26 bp): AACTGGGGCATAAGCCCTTTTCAATA Found at i:79744171 original size:52 final size:51 Alignment explanation
Indices: 79744065--79744181 Score: 191 Period size: 52 Copynumber: 2.3 Consensus size: 51 79744055 TAATAACTAG * * 79744065 GGCA-AAGCCCTTTTTGGTAAACTGGGGCAAAGCCCTTTCCAATAAACTGG 1 GGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTCCAATAAACTGA * 79744115 GGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGA 1 GGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTCCAATAAACTGA 79744167 GGCATAAGCCCTTTT 1 GGCATAAGCCCTTTT 79744182 GCACTTCCTC Statistics Matches: 62, Mismatches: 3, Indels: 2 0.93 0.04 0.03 Matches are distributed among these distances: 50 4 0.06 51 24 0.39 52 34 0.55 ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26 Consensus pattern (51 bp): GGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTCCAATAAACTGA Found at i:79744255 original size:20 final size:20 Alignment explanation
Indices: 79744230--79744305 Score: 104 Period size: 20 Copynumber: 3.9 Consensus size: 20 79744220 TTATGAATTC * 79744230 ATCATGTGCATTTCATACAT 1 ATCATGTGCATATCATACAT * 79744250 ATCATGTGCATATCATGCAT 1 ATCATGTGCATATCATACAT 79744270 ATCATGTGCATATCATATCA- 1 ATCATGTGCATATCATA-CAT 79744290 ATCATGT--ATATCATAC 1 ATCATGTGCATATCATAC 79744306 CCCACGTATC Statistics Matches: 52, Mismatches: 3, Indels: 5 0.87 0.05 0.08 Matches are distributed among these distances: 17 1 0.02 18 8 0.15 20 41 0.79 21 2 0.04 ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:79744261 original size:11 final size:11 Alignment explanation
Indices: 79744230--79744285 Score: 66 Period size: 11 Copynumber: 5.5 Consensus size: 11 79744220 TTATGAATTC 79744230 ATCATGTGCAT 1 ATCATGTGCAT * * 79744241 TTCA--TACAT 1 ATCATGTGCAT 79744250 ATCATGTGCAT 1 ATCATGTGCAT 79744261 ATCA--TGCAT 1 ATCATGTGCAT 79744270 ATCATGTGCAT 1 ATCATGTGCAT 79744281 ATCAT 1 ATCAT 79744286 ATCAATCATG Statistics Matches: 37, Mismatches: 4, Indels: 8 0.76 0.08 0.16 Matches are distributed among these distances: 9 16 0.43 11 21 0.57 ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38 Consensus pattern (11 bp): ATCATGTGCAT Found at i:79744987 original size:27 final size:27 Alignment explanation
Indices: 79744957--79745021 Score: 78 Period size: 27 Copynumber: 2.4 Consensus size: 27 79744947 GGGCATATTC 79744957 GTCATTTTACCATACAAGGG-TATTACG 1 GTCATTTTACCATACAAGGGCT-TTACG * * * 79744984 GTCACTTTACCCTACAGGGGCTTTACG 1 GTCATTTTACCATACAAGGGCTTTACG * 79745011 GTCTTTTTACC 1 GTCATTTTACC 79745022 TATTAGGGGT Statistics Matches: 32, Mismatches: 5, Indels: 2 0.82 0.13 0.05 Matches are distributed among these distances: 27 31 0.97 28 1 0.03 ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35 Consensus pattern (27 bp): GTCATTTTACCATACAAGGGCTTTACG Found at i:79745373 original size:27 final size:27 Alignment explanation
Indices: 79745052--79745368 Score: 221 Period size: 27 Copynumber: 11.8 Consensus size: 27 79745042 TTTCATCCTA * * * 79745052 CAAGGGTGTTTTGGTAAATCTACAAAC 1 CAAGGGTATTTTGGTAATTTTACAAAC * ** ** 79745079 CAATGGTATTTCAGTAATTTTGTAAAC 1 CAAGGGTATTTTGGTAATTTTACAAAC * * * * * 79745106 TAATGGTATTTCT-ATAATTTTAGAAAGT 1 CAAGGGTATTT-TGGTAATTTTACAAA-C ** * 79745134 CAAGGGTATTTCT-GTAATTTTGTAAAT 1 CAAGGGTATTT-TGGTAATTTTACAAAC * * 79745161 CAGGGGTATTTTGGTAATTTTACAAAT 1 CAAGGGTATTTTGGTAATTTTACAAAC ** * * 79745188 TGAGGGTATTTCGGTAATTTCACAAAC 1 CAAGGGTATTTTGGTAATTTTACAAAC * 79745215 C-AGTGGTATTTTGGTAACTTTACAAAC 1 CAAG-GGTATTTTGGTAATTTTACAAAC * * 79745242 TAGGGGTATTTTGGTAATTTTACAAAC 1 CAAGGGTATTTTGGTAATTTTACAAAC * * * * 79745269 CAGGGGTATTTTAGCAATTTTACAGA- 1 CAAGGGTATTTTGGTAATTTTACAAAC * ** * 79745295 CTA-GGTATTTTGGTAATTTTACTGAT 1 CAAGGGTATTTTGGTAATTTTACAAAC * * ** 79745321 CGAGGGAATTTTGGTAATTTTGTAAAC 1 CAAGGGTATTTTGGTAATTTTACAAAC * 79745348 CAAGGGTATTTTAGTAATTTT 1 CAAGGGTATTTTGGTAATTTT 79745369 GTAAATCGAG Statistics Matches: 229, Mismatches: 54, Indels: 14 0.77 0.18 0.05 Matches are distributed among these distances: 25 19 0.08 26 6 0.03 27 182 0.79 28 22 0.10 ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40 Consensus pattern (27 bp): CAAGGGTATTTTGGTAATTTTACAAAC Found at i:79745380 original size:27 final size:27 Alignment explanation
Indices: 79745136--79745463 Score: 150 Period size: 27 Copynumber: 12.2 Consensus size: 27 79745126 TAGAAAGTCA 79745136 AGGGTATTTCT-GTAATTTTGTAAATC- 1 AGGGTATTT-TGGTAATTTTGTAAATCG ** * 79745162 AGGGGTATTTTGGTAATTTTACAAATTG 1 A-GGGTATTTTGGTAATTTTGTAAATCG * *** * 79745190 AGGGTATTTCGGTAATTTCACAAA-CC 1 AGGGTATTTTGGTAATTTTGTAAATCG * ** * 79745216 AGTGGTATTTTGGTAACTTTACAAA-CT 1 AG-GGTATTTTGGTAATTTTGTAAATCG ** * 79745243 AGGGGTATTTTGGTAATTTTACAAA-CC 1 A-GGGTATTTTGGTAATTTTGTAAATCG * * ** * * 79745270 AGGGGTATTTTAGCAATTTTACAGA-CT 1 A-GGGTATTTTGGTAATTTTGTAAATCG * * 79745297 A-GGTATTTTGGTAATTTTACT-GATCG 1 AGGGTATTTTGGTAATTTT-GTAAATCG * * * 79745323 AGGGAATTTTGGTAATTTTGTAAACCA 1 AGGGTATTTTGGTAATTTTGTAAATCG * 79745350 AGGGTATTTTAGTAATTTTGTAAATCG 1 AGGGTATTTTGGTAATTTTGTAAATCG ***** * * * 79745377 AGGGTAAAACAGTAATTCTGCAAATCA 1 AGGGTATTTTGGTAATTTTGTAAATCG *** * 79745404 AGGGTAAAATGGTAATTCTGTAAATCG 1 AGGGTATTTTGGTAATTTTGTAAATCG *** * * 79745431 AGGGTAAAATGATAATTCTGTAAATCG 1 AGGGTATTTTGGTAATTTTGTAAATCG 79745458 AGGGTA 1 AGGGTA 79745464 AAACGGTAAT Statistics Matches: 250, Mismatches: 43, Indels: 17 0.81 0.14 0.05 Matches are distributed among these distances: 25 17 0.07 26 7 0.03 27 224 0.90 28 2 0.01 ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37 Consensus pattern (27 bp): AGGGTATTTTGGTAATTTTGTAAATCG Found at i:79745435 original size:81 final size:81 Alignment explanation
Indices: 79745359--79745649 Score: 361 Period size: 81 Copynumber: 3.6 Consensus size: 81 79745349 AAGGGTATTT * * * * 79745359 TAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGCAAATCAAGGGTAAAATGGTAATTCTG 1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAATCAAGGGTAAAACGGTAATTCTG 79745424 TAAATCGAGGGTAAAA 66 TAAATCGAGGGTAAAA * * * * 79745440 T-GATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATAAAAGGTAAAACAGTAATTCT 1 TAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAATCAAGGGTAAAACGGTAATTCT 79745504 GTAAATCGAGGGTAAAA 65 GTAAATCGAGGGTAAAA ** * * * ** * ** * 79745521 CGGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGAATAAAACGGTAATTCTA 1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAATCAAGGGTAAAACGGTAATTCTG 79745586 TAAATCGAGGGTAAAA 66 TAAATCGAGGGTAAAA * * * 79745602 TAGT-ATTCTATAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG 1 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAATCAAGGG 79745650 CATTTCAGTA Statistics Matches: 179, Mismatches: 29, Indels: 5 0.84 0.14 0.02 Matches are distributed among these distances: 80 38 0.21 81 140 0.78 82 1 0.01 ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28 Consensus pattern (81 bp): TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAATCAAGGGTAAAACGGTAATTCTG TAAATCGAGGGTAAAA Found at i:79745464 original size:27 final size:27 Alignment explanation
Indices: 79745362--79745649 Score: 305 Period size: 27 Copynumber: 10.7 Consensus size: 27 79745352 GGTATTTTAG * * 79745362 TAATTTTGTAAATCGAGGGTAAAA-CA 1 TAATTCTGTAAATCGAGGGTAAAATGA * * * 79745388 GTAATTCTGCAAATCAAGGGTAAAATGG 1 -TAATTCTGTAAATCGAGGGTAAAATGA 79745416 TAATTCTGTAAATCGAGGGTAAAATGA 1 TAATTCTGTAAATCGAGGGTAAAATGA * * 79745443 TAATTCTGTAAATCGAGGGTAAAACGG 1 TAATTCTGTAAATCGAGGGTAAAATGA * ** * * 79745470 TAATTCTATAAATAAAAGGTAAAA-CA 1 TAATTCTGTAAATCGAGGGTAAAATGA * * 79745496 GTAATTCTGTAAATCGAGGGTAAAACGG 1 -TAATTCTGTAAATCGAGGGTAAAATGA 79745524 TAATTCTGTAAATCGAGGGTAAAATGA 1 TAATTCTGTAAATCGAGGGTAAAATGA * ** * * 79745551 TAATTTTGTAAATCGAGAATAAAACGG 1 TAATTCTGTAAATCGAGGGTAAAATGA * 79745578 TAATTCTATAAATCGAGGGTAAAAT-A 1 TAATTCTGTAAATCGAGGGTAAAATGA * * 79745604 GT-ATTCTATAAATCGAGGGTAAAATGG 1 -TAATTCTGTAAATCGAGGGTAAAATGA ** 79745631 TAATTCTACAAATCGAGGG 1 TAATTCTGTAAATCGAGGG 79745650 CATTTCAGTA Statistics Matches: 218, Mismatches: 37, Indels: 12 0.82 0.14 0.04 Matches are distributed among these distances: 26 24 0.11 27 194 0.89 ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28 Consensus pattern (27 bp): TAATTCTGTAAATCGAGGGTAAAATGA Found at i:79747946 original size:31 final size:31 Alignment explanation
Indices: 79747894--79747971 Score: 131 Period size: 31 Copynumber: 2.5 Consensus size: 31 79747884 TTTAACGGTT 79747894 ACTGGGCCGAAGCC-TTTCATAAATCAAATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * 79747924 ACTGGGCCGAAGCCTTTTCATAAATCATATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * 79747955 ATTGGGCCGAAGCCTTT 1 ACTGGGCCGAAGCCTTT 79747972 ATTGTAAACG Statistics Matches: 45, Mismatches: 2, Indels: 1 0.94 0.04 0.02 Matches are distributed among these distances: 30 14 0.31 31 31 0.69 ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27 Consensus pattern (31 bp): ACTGGGCCGAAGCCTTTTCATAAATCAAATC Found at i:79748055 original size:42 final size:42 Alignment explanation
Indices: 79747995--79748086 Score: 166 Period size: 42 Copynumber: 2.2 Consensus size: 42 79747985 TGGCCCATAG * 79747995 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA 1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA * 79748037 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA 1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA 79748079 GCCCATTT 1 GCCCATTT 79748087 GGGGATACTA Statistics Matches: 48, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 42 48 1.00 ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27 Consensus pattern (42 bp): GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA Found at i:79748308 original size:26 final size:26 Alignment explanation
Indices: 79748231--79748353 Score: 169 Period size: 26 Copynumber: 4.8 Consensus size: 26 79748221 CCTCTTTAAT ** 79748231 AACTGGGGCA-AAGCCCTTTTCGGTA 1 AACTGGGGCATAAGCCCTTTTCAATA * * 79748256 AACTGGGGCA-AAGCCCTGTCCAATA 1 AACTGGGGCATAAGCCCTTTTCAATA ** 79748281 AACTGGGGCATAAGCCCTTTTCGGTA 1 AACTGGGGCATAAGCCCTTTTCAATA 79748307 AACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCAATA * 79748333 AACTAGGGCATAAGCCCTTTT 1 AACTGGGGCATAAGCCCTTTT 79748354 GCACTTCCTC Statistics Matches: 86, Mismatches: 11, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 25 31 0.36 26 55 0.64 ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24 Consensus pattern (26 bp): AACTGGGGCATAAGCCCTTTTCAATA Found at i:79748344 original size:52 final size:51 Alignment explanation
Indices: 79748231--79748353 Score: 203 Period size: 52 Copynumber: 2.4 Consensus size: 51 79748221 CCTCTTTAAT 79748231 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTGTCCAATA 1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTGTCCAATA * * 79748281 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTGTCCAATA * 79748333 AACTAGGGCATAAGCCCTTTT 1 AACTGGGGCATAAGCCCTTTT 79748354 GCACTTCCTC Statistics Matches: 68, Mismatches: 3, Indels: 2 0.93 0.04 0.03 Matches are distributed among these distances: 50 10 0.15 51 25 0.37 52 33 0.49 ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24 Consensus pattern (51 bp): AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTGTCCAATA Found at i:79748428 original size:20 final size:20 Alignment explanation
Indices: 79748403--79748469 Score: 91 Period size: 20 Copynumber: 3.4 Consensus size: 20 79748393 TTATGAATTC * 79748403 ATCATGTGCATTTCATACAT 1 ATCATGTGCATATCATACAT * * 79748423 ATCATGTGCATATAATGCAT 1 ATCATGTGCATATCATACAT 79748443 ATCATGTGCATATCATATCA- 1 ATCATGTGCATATCATA-CAT 79748463 ATCATGT 1 ATCATGT 79748470 ATATCGTACC Statistics Matches: 41, Mismatches: 5, Indels: 2 0.85 0.10 0.04 Matches are distributed among these distances: 20 39 0.95 21 2 0.05 ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:79748434 original size:11 final size:11 Alignment explanation
Indices: 79748403--79748458 Score: 57 Period size: 11 Copynumber: 5.5 Consensus size: 11 79748393 TTATGAATTC 79748403 ATCATGTGCAT 1 ATCATGTGCAT * * 79748414 TTCA--TACAT 1 ATCATGTGCAT 79748423 ATCATGTGCAT 1 ATCATGTGCAT * 79748434 AT-A-ATGCAT 1 ATCATGTGCAT 79748443 ATCATGTGCAT 1 ATCATGTGCAT 79748454 ATCAT 1 ATCAT 79748459 ATCAATCATG Statistics Matches: 35, Mismatches: 6, Indels: 8 0.71 0.12 0.16 Matches are distributed among these distances: 9 14 0.40 10 2 0.06 11 19 0.54 ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38 Consensus pattern (11 bp): ATCATGTGCAT Found at i:79748533 original size:25 final size:25 Alignment explanation
Indices: 79748505--79748552 Score: 87 Period size: 25 Copynumber: 1.9 Consensus size: 25 79748495 ATAATTAAAC 79748505 CCTAGGGGCAAAACAGCCATTTTGA 1 CCTAGGGGCAAAACAGCCATTTTGA * 79748530 CCTAGGGGCAAAACAGTCATTTT 1 CCTAGGGGCAAAACAGCCATTTT 79748553 CACATTATAA Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 25 22 1.00 ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23 Consensus pattern (25 bp): CCTAGGGGCAAAACAGCCATTTTGA Found at i:79751256 original size:31 final size:31 Alignment explanation
Indices: 79751204--79751281 Score: 131 Period size: 31 Copynumber: 2.5 Consensus size: 31 79751194 TTTAACGGTT 79751204 ACTGGGCCGAAGCC-TTTCATAAATCAAATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * 79751234 ACTGGGCCGAAGCCTTTTCATAAATCATATC 1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC * 79751265 ATTGGGCCGAAGCCTTT 1 ACTGGGCCGAAGCCTTT 79751282 ATTGTAAACG Statistics Matches: 45, Mismatches: 2, Indels: 1 0.94 0.04 0.02 Matches are distributed among these distances: 30 14 0.31 31 31 0.69 ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27 Consensus pattern (31 bp): ACTGGGCCGAAGCCTTTTCATAAATCAAATC Found at i:79751365 original size:42 final size:42 Alignment explanation
Indices: 79751305--79751396 Score: 166 Period size: 42 Copynumber: 2.2 Consensus size: 42 79751295 TGGCCCATAG * 79751305 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA 1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA * 79751347 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA 1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA 79751389 GCCCATTT 1 GCCCATTT 79751397 GGGGATACTA Statistics Matches: 48, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 42 48 1.00 ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27 Consensus pattern (42 bp): GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA Found at i:79751618 original size:26 final size:26 Alignment explanation
Indices: 79751541--79751663 Score: 169 Period size: 26 Copynumber: 4.8 Consensus size: 26 79751531 CCTCTTTAAT ** 79751541 AACTGGGGCA-AAGCCCTTTTCGGTA 1 AACTGGGGCATAAGCCCTTTTCAATA * * 79751566 AACTGGGGCA-AAGCCCTGTCCAATA 1 AACTGGGGCATAAGCCCTTTTCAATA ** 79751591 AACTGGGGCATAAGCCCTTTTCGGTA 1 AACTGGGGCATAAGCCCTTTTCAATA 79751617 AACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCAATA * 79751643 AACTAGGGCATAAGCCCTTTT 1 AACTGGGGCATAAGCCCTTTT 79751664 GCACTTCCTC Statistics Matches: 86, Mismatches: 11, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 25 31 0.36 26 55 0.64 ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24 Consensus pattern (26 bp): AACTGGGGCATAAGCCCTTTTCAATA Found at i:79751654 original size:52 final size:51 Alignment explanation
Indices: 79751541--79751663 Score: 203 Period size: 52 Copynumber: 2.4 Consensus size: 51 79751531 CCTCTTTAAT 79751541 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTGTCCAATA 1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTGTCCAATA * * 79751591 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA 1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTGTCCAATA * 79751643 AACTAGGGCATAAGCCCTTTT 1 AACTGGGGCATAAGCCCTTTT 79751664 GCACTTCCTC Statistics Matches: 68, Mismatches: 3, Indels: 2 0.93 0.04 0.03 Matches are distributed among these distances: 50 10 0.15 51 25 0.37 52 33 0.49 ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24 Consensus pattern (51 bp): AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTGTCCAATA Found at i:79751738 original size:20 final size:20 Alignment explanation
Indices: 79751713--79751779 Score: 91 Period size: 20 Copynumber: 3.4 Consensus size: 20 79751703 TTATGAATTC * 79751713 ATCATGTGCATTTCATACAT 1 ATCATGTGCATATCATACAT * * 79751733 ATCATGTGCATATAATGCAT 1 ATCATGTGCATATCATACAT 79751753 ATCATGTGCATATCATATCA- 1 ATCATGTGCATATCATA-CAT 79751773 ATCATGT 1 ATCATGT 79751780 ATATCGTACC Statistics Matches: 41, Mismatches: 5, Indels: 2 0.85 0.10 0.04 Matches are distributed among these distances: 20 39 0.95 21 2 0.05 ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:79751744 original size:11 final size:11 Alignment explanation
Indices: 79751713--79751768 Score: 57 Period size: 11 Copynumber: 5.5 Consensus size: 11 79751703 TTATGAATTC 79751713 ATCATGTGCAT 1 ATCATGTGCAT * * 79751724 TTCA--TACAT 1 ATCATGTGCAT 79751733 ATCATGTGCAT 1 ATCATGTGCAT * 79751744 AT-A-ATGCAT 1 ATCATGTGCAT 79751753 ATCATGTGCAT 1 ATCATGTGCAT 79751764 ATCAT 1 ATCAT 79751769 ATCAATCATG Statistics Matches: 35, Mismatches: 6, Indels: 8 0.71 0.12 0.16 Matches are distributed among these distances: 9 14 0.40 10 2 0.06 11 19 0.54 ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38 Consensus pattern (11 bp): ATCATGTGCAT Found at i:79751843 original size:25 final size:25 Alignment explanation
Indices: 79751815--79751862 Score: 87 Period size: 25 Copynumber: 1.9 Consensus size: 25 79751805 ATAATTAAAC 79751815 CCTAGGGGCAAAACAGCCATTTTGA 1 CCTAGGGGCAAAACAGCCATTTTGA * 79751840 CCTAGGGGCAAAACAGTCATTTT 1 CCTAGGGGCAAAACAGCCATTTT 79751863 CACATTATAA Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 25 22 1.00 ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23 Consensus pattern (25 bp): CCTAGGGGCAAAACAGCCATTTTGA Found at i:79753707 original size:30 final size:30 Alignment explanation
Indices: 79753673--79753732 Score: 86 Period size: 30 Copynumber: 2.0 Consensus size: 30 79753663 CCCTAATATG 79753673 AACTTTGGCAAAATTAC-CATTTTGCCCCTA 1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA * * 79753703 AACTTTTGCATAATTACACTTTTGCCCCTA 1 AACTTTGGCAAAATTACACTTTTGCCCCTA 79753733 GGTTCGGGAA Statistics Matches: 27, Mismatches: 2, Indels: 2 0.87 0.06 0.06 Matches are distributed among these distances: 30 26 0.96 31 1 0.04 ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37 Consensus pattern (30 bp): AACTTTGGCAAAATTACACTTTTGCCCCTA Found at i:79754982 original size:21 final size:21 Alignment explanation
Indices: 79754957--79754999 Score: 63 Period size: 19 Copynumber: 2.1 Consensus size: 21 79754947 CGATTCTTCA * 79754957 AAAAAAAATAAATG--AATAG 1 AAAAAAAATAAAAGATAATAG 79754976 AAAAAAAATAAAAGATAATAG 1 AAAAAAAATAAAAGATAATAG 79754997 AAA 1 AAA 79755000 GGTTATGAAT Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 19 13 0.62 21 8 0.38 ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14 Consensus pattern (21 bp): AAAAAAAATAAAAGATAATAG Found at i:79760230 original size:47 final size:46 Alignment explanation
Indices: 79760026--79760391 Score: 217 Period size: 47 Copynumber: 7.7 Consensus size: 46 79760016 GTTAAGTTGT * * * * * 79760026 CGATGCCATGTCCCAGAGATGGTCTTACACTGGCTATCTTCATCGAGGC 1 CGATG-CATGTCCCAGACA-CGTCTTACACTGGCTACCATC-TCTAGGC * * * * * 79760075 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CTCGTGTATATGTGC 1 CGATG-CATGTCCCAGACA-CGTCTTACACTGGCTAC-CATCTCTA-G-GC * * * * * * * 79760125 TGTTGTATGTCCCAGACATGTCTTACACTAGC-ACGAAGCT-TA-GC 1 CGATGCATGTCCCAGACACGTCTTACACTGGCTAC-CATCTCTAGGC * 79760169 CGATGCATGTCCCAGACACATCTTACACTGGCTACCATCAT-TAAGGC 1 CGATGCATGTCCCAGACACGTCTTACACTGGCTACCATC-TCT-AGGC * 79760216 CGATGCATGTCCCAGACACGTCTTACACTGGC-ACTCATCTCTACGC 1 CGATGCATGTCCCAGACACGTCTTACACTGGCTAC-CATCTCTAGGC * * * * * 79760262 CGATGCCATGTCCCAGACATGGTCTTACACTTGGCTATCGTAATGT-GGC 1 CGATG-CATGTCCCAGACA-CGTCTTACAC-TGGCTACCAT-CTCTAGGC ** * * * * * 79760311 TAATGCATGTCCCAGACACGTCTTACACTAGCCT-TCTTCTCAAAGC 1 CGATGCATGTCCCAGACACGTCTTACACT-GGCTACCATCTCTAGGC * 79760357 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT 1 CGATG-CATGTCCCAGACA-CGTCTTACACTGGCT 79760392 CTCACATAAC Statistics Matches: 253, Mismatches: 45, Indels: 40 0.75 0.13 0.12 Matches are distributed among these distances: 44 30 0.12 45 5 0.02 46 21 0.08 47 81 0.32 48 49 0.19 49 59 0.23 50 8 0.03 ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27 Consensus pattern (46 bp): CGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCTCTAGGC Found at i:79760324 original size:95 final size:93 Alignment explanation
Indices: 79760073--79760391 Score: 353 Period size: 95 Copynumber: 3.4 Consensus size: 93 79760063 CTTCATCGAG * * * * 79760073 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATATGT-GCTGTTGTATGTCC 1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC--GTA-ATGTGGCTGATGCATGTCC * ** * 79760137 CAGACATGTCTTACACTAGCACGAAGCT-TA 63 CAGACACGTCTTACACTAGCACTCATCTCTA ** * * * * 79760167 GCCGATG-CATGTCCCAGACA-CATCTTACACTGGCTACCATCAT-TAAGGCCGATGCATGTCCC 1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGT--GGCTGATGCATGTCCC * 79760229 AGACACGTCTTACACTGGCACTCATCTCTA 64 AGACACGTCTTACACTAGCACTCATCTCTA * 79760259 CGCCGATGCCATGTCCCAGACATGGTCTTACACTTGGCTATCGTAATGTGGCTAATGCATGTCCC 1 -GCCGATGCCATGTCCCAGACATGGTCTTACAC-TGGCTATCGTAATGTGGCTGATGCATGTCCC * * 79760324 AGACACGTCTTACACTAGC-CTTCTTCTCAAA 64 AGACACGTCTTACACTAGCAC-TCATCTC-TA 79760355 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT 1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT 79760392 CTCACATAAC Statistics Matches: 189, Mismatches: 25, Indels: 22 0.80 0.11 0.09 Matches are distributed among these distances: 88 1 0.01 89 2 0.01 90 1 0.01 91 34 0.18 92 15 0.08 93 20 0.11 94 26 0.14 95 78 0.41 96 11 0.06 97 1 0.01 ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27 Consensus pattern (93 bp): GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCAG ACACGTCTTACACTAGCACTCATCTCTA Found at i:79767850 original size:26 final size:25 Alignment explanation
Indices: 79767808--79767869 Score: 65 Period size: 26 Copynumber: 2.4 Consensus size: 25 79767798 TTAAACCTAG 79767808 AAATAAAATAATATTAAAGGAAAATA 1 AAATAAAATAATATTAAA-GAAAATA * * 79767834 AAATAAAAT-GTACTTAAAGAAGATA 1 AAATAAAATAATA-TTAAAGAAAATA 79767859 AAA-AAAGATAA 1 AAATAAA-ATAA 79767870 AAGTGAAAAT Statistics Matches: 30, Mismatches: 3, Indels: 6 0.77 0.08 0.15 Matches are distributed among these distances: 24 3 0.10 25 13 0.43 26 14 0.47 ACGTcount: A:0.68, C:0.02, G:0.10, T:0.21 Consensus pattern (25 bp): AAATAAAATAATATTAAAGAAAATA Found at i:79776100 original size:354 final size:348 Alignment explanation
Indices: 79775240--79776617 Score: 1531 Period size: 352 Copynumber: 3.9 Consensus size: 348 79775230 GATCAGATTG * * * * 79775240 GACCCAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCTATGTTTGG 1 GACCTAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAAGTGTGG * * * ** * * * 79775305 CGTACCTTAATCCTAAGTGGATGGCTGACTATGTATGTGTGACTCGTATACACTAACGTAAGTAA 66 CATACCTTAATCCTAAGTGGAT-GATGGCTATGTATGCATGACTCGTATACATTGATGTAAGTAA *** * * 79775370 AATAATGAGTTCAAATAGATAAGGAATTGAAGGCTGGTGCATTGGGTATACGACTTTTGTAATAT 130 AAGCTTGAGTTCAAATAGATAAGGAACTGAAGGCT-GTGCATTGGGTATACGACTTTTGCAATAT ** * * 79775435 GTAGCGTCATTCACAATAGTAAAATTCATTACCTGAGACATAGGTAAATGATATCCCTTCATTAG 194 GTAGCGTCATTCACAATAGTGGAATTCATTACCTGAGACATAGGTAAATGATATCCTTTCATTGG * * * * 79775500 CAATACATGGTTGATAAAAAGTAAACGTGGCCATAGGTTGTTCGTCTTTGAT-AAGAATGGATGT 259 CATTACATGGTTGATAAAAAGTAAACGTGGCCAT-GGGTGTTCGTCTTTG-TGATGAATGAATGT * * * * 79775564 GACTCTGCACCGACGGTGCATTAGACTG 322 GACTCTG-ACTGACAGTACATTAGACTA * * * * * * * * * 79775592 GACCTAGGAAGAAGAGATCCTGAATCCATTTTTGGATTTATTTACTTGCGACATTTAAAGTATGA 1 GACCTAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAAGTGTGG * * 79775657 CATACCTTAATCCTGAGTGGATAATAGGCTATGTATGCATGACTCGTATACATTGATGTAAGTAA 66 CATACCTTAATCCTAAGTGGATGAT-GGCTATGTATGCATGACTCGTATACATTGATGTAAGTAA * * * 79775722 AAGCTTGAGTTCAAATAGATAAGGAACTGAAGGCTGTTGTATTGGGTATATGATTTTTGCAATAT 130 AAGCTTGAGTTCAAATAGATAAGGAACTGAAGGCTG-TGCATTGGGTATACGACTTTTGCAATAT * * ** 79775787 GTAGCGTCATTCACAATAGTGGAATTCATTGCCTGAGATATAATTAAATGATATCCTTTCATTGG 194 GTAGCGTCATTCACAATAGTGGAATTCATTACCTGAGACATAGGTAAATGATATCCTTTCATTGG ** ** * * 79775852 CATTACAAAGTTTTTAAAAAGTAAACATTGCCATGGGTCGTTCGTCTTTGTGATGAATGAATGTG 259 CATTACATGGTTGATAAAAAGTAAACGTGGCCATGGGT-GTTCGTCTTTGTGATGAATGAATGTG * * * 79775917 GCTGGTTAGACTGACAGTACATTAGATTA 323 ACT--CT-GACTGACAGTACATTAGACTA * 79775946 GACCTAAGAAGAAGATATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAAGTGTGG 1 GACCTAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAAGTGTGG * * 79776011 CATACCTTAATACTAAGTGGATGATAGGCTATGTATGCATGACTCGTATACATTGATATAAGTAA 66 CATACCTTAATCCTAAGTGGATGAT-GGCTATGTATGCATGACTCGTATACATTGATGTAAGTAA * * * * * * 79776076 AAGCCTGAGTTCAAATAAATAAGGAATTAAAGGCTGTGCATTGTGTATACGACTTTTACAATATG 130 AAGCTTGAGTTCAAATAGATAAGGAACTGAAGGCTGTGCATTGGGTATACGACTTTTGCAATATG * * * * 79776141 TAACGTCATTCA-AATAATGGAATTCATTACCTAAGACATAGGTAAATGATATCCTTTCATTGGA 195 TAGCGTCATTCACAATAGTGGAATTCATTACCTGAGACATAGGTAAATGATATCCTTTCATTGGC * ** * * * * * 79776205 ATTACATGGTTGATAAAATGTATGCGTGGCCACGGGGTGTTCATATTTGTGATAAATAAATGTGA 260 ATTACATGGTTGATAAAAAGTAAACGTGGCCA-TGGGTGTTCGTCTTTGTGATGAATGAATGTGA * 79776270 CTAACTGGACTGATAGTACATTAGACTA 324 CT--CT-GACTGACAGTACATTAGACTA * * * * 79776298 GACCTAAGAAGAAGAGATCCTAAGTCC-TCTTATGAATTTATTCACTTGTGATATTAAAAGTGTG 1 GACCTAAGAAGAAGAGATCCTAAATCCGT-TTATGGATTTATTCACTTGTGACATTCAAAGTGTG * * * 79776362 GCATACCTTAATCCTAAGTGGATGATGGACTATGTATGCATGATTCGTATACTTTTATGTAAGTA 65 GCATACCTTAATCCTAAGTGGATGATGG-CTATGTATGCATGACTCGTATACATTGATGTAAGTA * * *** * * * * * * 79776427 AAAGCTTGAGTTCAAATGGATAAGGAACTAAAATTTGATGCATTGGCTGTATGACTTCTGTAGTA 129 AAAGCTTGAGTTCAAATAGATAAGGAACTGAAGGCTG-TGCATTGGGTATACGACTTTTGCAATA * * * * * * * * 79776492 TGTAGCATCATTTAAAATAATGTATTTCA-TATCCTGAGACATTGGTAAATTATATCCTTTCATT 193 TGTAGCGTCATTCACAATAGTGGAATTCATTA-CCTGAGACATAGGTAAATGATATCCTTTCATT * * ** * * * * 79776556 GGAATTACATGATTGAGGAAAAGTAAAAGTAGCCACGTGTTGTTCGTCTTTGTGATGAATGA 257 GGCATTACATGGTTGATAAAAAGTAAACGTGGCCATG-GGTGTTCGTCTTTGTGATGAATGA 79776618 CTTGATTACT Statistics Matches: 858, Mismatches: 154, Indels: 26 0.83 0.15 0.03 Matches are distributed among these distances: 351 9 0.01 352 525 0.61 353 72 0.08 354 251 0.29 355 1 0.00 ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33 Consensus pattern (348 bp): GACCTAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAAGTGTGG CATACCTTAATCCTAAGTGGATGATGGCTATGTATGCATGACTCGTATACATTGATGTAAGTAAA AGCTTGAGTTCAAATAGATAAGGAACTGAAGGCTGTGCATTGGGTATACGACTTTTGCAATATGT AGCGTCATTCACAATAGTGGAATTCATTACCTGAGACATAGGTAAATGATATCCTTTCATTGGCA TTACATGGTTGATAAAAAGTAAACGTGGCCATGGGTGTTCGTCTTTGTGATGAATGAATGTGACT CTGACTGACAGTACATTAGACTA Found at i:79776603 original size:706 final size:706 Alignment explanation
Indices: 79775234--79776617 Score: 1723 Period size: 706 Copynumber: 2.0 Consensus size: 706 79775224 ATAGTAGATC * * * 79775234 AGATTGGACCCAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCTAT 1 AGATTAGACCCAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAA * * * * ** * 79775299 GTTTGGCGTACCTTAATCCTAAGTGGATGGCTGACTATGTATGTGTGACTCGTATACACTAACGT 66 GTGTGGCATACCTTAATACTAAGTGGATGGATGACTATGTATGCATGACTCGTATACACTAACAT * * * * 79775364 AAGTAAAATAATGAGTTCAAATAGATAAGGAATTGAAGGCTGGTGCATTGGGTATACGACTTTTG 131 AAGTAAAAGAATGAGTTCAAATAAATAAGGAATTAAAGGCTGGTGCATTGGGTATACGACTTTTA * * * * 79775429 TAATATGTAGCGTCATTCACAATAGTAAAATTCATTACCTGAGACATAGGTAAATGATATCCCTT 196 CAATATGTAACGTCATTCACAATAATAAAATTCATTACCTAAGACATAGGTAAATGATATCCCTT * * * * 79775494 CATTAGCAATACATGGTTGATAAAAAGTAAACGTGGCCATAGGTTGTTCGTCTTTGATAAGAATG 261 CATTAGCAATACATGGTTGATAAAAAGTAAACGTGGCCACAGGGTGTTCATCTTTGATAAGAATA * * * * * * 79775559 GATGTGACTCTGCACCGACGGTGCATTAGACTGGACCTAGGAAGAAGAGATCCTGAATCCATTTT 326 AATGTGACTCTGCACCGACAGTACATTAGACTAGACCTAAGAAGAAGAGATCCTGAATCCATTTA * * * * 79775624 TGGATTTATTTACTTGCGACATTTAAAGTATGACATACCTTAATCCTGAGTGGATAATAGGCTAT 391 TGAATTTATTCACTTGCGACATTAAAAGTATGACATACCTTAATCCTAAGTGGATAATAGGCTAT * * 79775689 GTATGCATGACTCGTATACATTGATGTAAGTAAAAGCTTGAGTTCAAATAGATAAGGAACTGAAG 456 GTATGCATGACTCGTATACATTGATGTAAGTAAAAGCTTGAGTTCAAATAGATAAGGAACTAAAA * * * * * * * * 79775754 GCTGTTGTATTGGGTATATGATTTTTGCAATATGTAGCGTCATTCACAATAGTGGAATTCATTGC 521 GCTGATGCATTGGCTATATGACTTCTGCAATATGTAGCATCATTCAAAATAATGGAATTCATTGC * * * * * * 79775819 CTGAGATATAATTAAATGATATCCTTTCATTGGCATTACAAAGTTTTTAAAAAGTAAACATTGCC 586 CTGAGACATAAGTAAATGATATCCTTTCATTGGAATTACAAAGTATTGAAAAAGTAAACATAGCC * 79775884 ATGGGTCGTTCGTCTTTGTGATGAATGAATGTGGCTGGTTAGACTGACAGTACATT 651 ACGGGTCGTTCGTCTTTGTGATGAATGAATGTGGCTGGTTAGACTGACAGTACATT * * 79775940 AGATTAGACCTAAGAAGAAGATATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAA 1 AGATTAGACCCAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAA * * * * 79776005 GTGTGGCATACCTTAATACTAAGTGGAT-GATAGGCTATGTATGCATGACTCGTATACATTGATA 66 GTGTGGCATACCTTAATACTAAGTGGATGGAT-GACTATGTATGCATGACTCGTATACACTAACA ** * 79776069 TAAGTAAAAGCCTGAGTTCAAATAAATAAGGAATTAAAGGCT-GTGCATTGTGTATACGACTTTT 130 TAAGTAAAAGAATGAGTTCAAATAAATAAGGAATTAAAGGCTGGTGCATTGGGTATACGACTTTT ** * 79776133 ACAATATGTAACGTCATTCA-AATAATGGAATTCATTACCTAAGACATAGGTAAATGATATCCTT 195 ACAATATGTAACGTCATTCACAATAATAAAATTCATTACCTAAGACATAGGTAAATGATATCCCT * * ** * * 79776197 TCATT-GGAATTACATGGTTGATAAAATGTATGCGTGGCCACGGGGTGTTCATATTTG-TGATA- 260 TCATTAGCAA-TACATGGTTGATAAAAAGTAAACGTGGCCACAGGGTGTTCATCTTTGAT-A-AG * * * 79776259 AATAAATGTGACTAACTGGACTGATAGTACATTAGACTAGACCTAAGAAGAAGAGATCCT-AAGT 322 AATAAATGTGACT--CTGCACCGACAGTACATTAGACTAGACCTAAGAAGAAGAGATCCTGAA-T * * * * * 79776323 CC-TCTTATGAATTTATTCACTTGTGATATTAAAAGTGTGGCATACCTTAATCCTAAGTGGATGA 384 CCAT-TTATGAATTTATTCACTTGCGACATTAAAAGTATGACATACCTTAATCCTAAGTGGATAA * * * * 79776387 T-GGACTATGTATGCATGATTCGTATACTTTTATGTAAGTAAAAGCTTGAGTTCAAATGGATAAG 448 TAGG-CTATGTATGCATGACTCGTATACATTGATGTAAGTAAAAGCTTGAGTTCAAATAGATAAG ** * * * * * 79776451 GAACTAAAATTTGATGCATTGGCTGTATGACTTCTGTAGTATGTAGCATCATTTAAAATAATGTA 512 GAACTAAAAGCTGATGCATTGGCTATATGACTTCTGCAATATGTAGCATCATTCAAAATAATGGA * ** * * 79776516 TTTCATAT-CCTGAGACATTGGTAAATTATATCCTTTCATTGGAATTAC-ATG-ATTGAGGAAAA 577 ATTCAT-TGCCTGAGACATAAGTAAATGATATCCTTTCATTGGAATTACAAAGTATTGA--AAAA * * 79776578 GTAAA-AGTAGCCACGTGTTGTTCGTCTTTGTGATGAATGA 639 GTAAACA-TAGCCACGGGTCGTTCGTCTTTGTGATGAATGA 79776618 CTTGATTACT Statistics Matches: 572, Mismatches: 93, Indels: 26 0.83 0.13 0.04 Matches are distributed among these distances: 703 4 0.01 704 98 0.17 705 49 0.09 706 420 0.73 707 1 0.00 ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33 Consensus pattern (706 bp): AGATTAGACCCAAGAAGAAGAGATCCTAAATCCGTTTATGGATTTATTCACTTGTGACATTCAAA GTGTGGCATACCTTAATACTAAGTGGATGGATGACTATGTATGCATGACTCGTATACACTAACAT AAGTAAAAGAATGAGTTCAAATAAATAAGGAATTAAAGGCTGGTGCATTGGGTATACGACTTTTA CAATATGTAACGTCATTCACAATAATAAAATTCATTACCTAAGACATAGGTAAATGATATCCCTT CATTAGCAATACATGGTTGATAAAAAGTAAACGTGGCCACAGGGTGTTCATCTTTGATAAGAATA AATGTGACTCTGCACCGACAGTACATTAGACTAGACCTAAGAAGAAGAGATCCTGAATCCATTTA TGAATTTATTCACTTGCGACATTAAAAGTATGACATACCTTAATCCTAAGTGGATAATAGGCTAT GTATGCATGACTCGTATACATTGATGTAAGTAAAAGCTTGAGTTCAAATAGATAAGGAACTAAAA GCTGATGCATTGGCTATATGACTTCTGCAATATGTAGCATCATTCAAAATAATGGAATTCATTGC CTGAGACATAAGTAAATGATATCCTTTCATTGGAATTACAAAGTATTGAAAAAGTAAACATAGCC ACGGGTCGTTCGTCTTTGTGATGAATGAATGTGGCTGGTTAGACTGACAGTACATT Found at i:79792199 original size:26 final size:26 Alignment explanation
Indices: 79792170--79792222 Score: 97 Period size: 26 Copynumber: 2.0 Consensus size: 26 79792160 AAACTATAAC * 79792170 TCATATCTTACATATTATTCAATTCA 1 TCATATCTCACATATTATTCAATTCA 79792196 TCATATCTCACATATTATTCAATTCA 1 TCATATCTCACATATTATTCAATTCA 79792222 T 1 T 79792223 ACCTTATTAT Statistics Matches: 26, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 26 26 1.00 ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45 Consensus pattern (26 bp): TCATATCTCACATATTATTCAATTCA Found at i:79792547 original size:43 final size:43 Alignment explanation
Indices: 79792500--79792624 Score: 171 Period size: 43 Copynumber: 2.9 Consensus size: 43 79792490 ATCACATATC * * * 79792500 GATGCCACTGTCCTAGACAGGGTCTTACACGAAATCA-ATTAA 1 GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATAA * 79792542 TGATGCCAATGTCCTAGACATGGTCTTACACGTAATCACAATAA 1 -GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATAA * * * 79792586 AATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA 1 GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACA 79792625 TCTCGGTAAC Statistics Matches: 75, Mismatches: 6, Indels: 2 0.90 0.07 0.02 Matches are distributed among these distances: 43 71 0.95 44 4 0.05 ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26 Consensus pattern (43 bp): GATGCCAATGTCCTAGACATGGTCTTACACGAAATCACAATAA Found at i:79804232 original size:14 final size:14 Alignment explanation
Indices: 79804213--79804246 Score: 50 Period size: 14 Copynumber: 2.4 Consensus size: 14 79804203 GCCCAAAGTG * 79804213 GATGATATGATTAT 1 GATGATATGACTAT * 79804227 GATGATATTACTAT 1 GATGATATGACTAT 79804241 GATGAT 1 GATGAT 79804247 GAAAGTCGTG Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 14 18 1.00 ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41 Consensus pattern (14 bp): GATGATATGACTAT Done.