Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 276 of 427
Found at i:79805132 original size:15 final size:15
Alignment explanation
Indices: 79805112--79805149 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
79805102 ATATCGTATC
79805112 TTGGATTTTTCTATT
1 TTGGATTTTTCTATT
**
79805127 TTGGATTCCTCTATT
1 TTGGATTTTTCTATT
79805142 TTGG-TTTT
1 TTGGATTTT
79805150 CTTGTCATCT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.11, C:0.11, G:0.16, T:0.63
Consensus pattern (15 bp):
TTGGATTTTTCTATT
Found at i:79808314 original size:44 final size:45
Alignment explanation
Indices: 79808259--79808344 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
79808249 GAACTATGTG
*
79808259 ATTTGAACTCA-TGAGTTGTGGTCTGAGTTTATGATATATGTGAC
1 ATTTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
*
79808303 ATTTGAACTCATTGAGTTGTGGTTTGAGTTCATGATATATGT
1 ATTTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGT
79808345 TACACATGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 11 0.28
45 28 0.72
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.43
Consensus pattern (45 bp):
ATTTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
Found at i:79809407 original size:22 final size:22
Alignment explanation
Indices: 79809382--79809425 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
79809372 ATTTGCTAAG
*
79809382 AATGTGTCTTAAGAAAGGATGC
1 AATGTGTCTTAAGAAAAGATGC
79809404 AATGTGTCTTAAGAAAAGATGC
1 AATGTGTCTTAAGAAAAGATGC
79809426 GTTATCATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (22 bp):
AATGTGTCTTAAGAAAAGATGC
Found at i:79810553 original size:27 final size:27
Alignment explanation
Indices: 79810512--79810684 Score: 265
Period size: 27 Copynumber: 6.4 Consensus size: 27
79810502 TGGATAAGTT
79810512 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
79810539 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
79810566 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
79810593 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
79810620 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
79810647 GTAGAATTACCGAGATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
79810674 GTAAAATTACC
1 GTAGAATTACC
79810685 ATTTTTCCCC
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:79811444 original size:26 final size:27
Alignment explanation
Indices: 79811415--79811474 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
79811405 CCATATATAT
*
79811415 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
79811441 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
79811468 ATATCTG
1 ATATCTG
79811475 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:79819814 original size:90 final size:90
Alignment explanation
Indices: 79819695--79819863 Score: 250
Period size: 90 Copynumber: 1.9 Consensus size: 90
79819685 TTTCACTGGT
* *
79819695 ATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGCATTGTAGCCTATTAGGCTCA
1 ATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGCATTATAGCCTACTAGGCTCA
* *
79819760 AAGTCCTAAATAGTATCTCATTGGC
66 AAGGCCCAAATAGTATCTCATTGGC
* * * *
79819785 ATTATAGCTTGCTAGGCTC-AAAGGCCCGAATAGTGTCTCATCGGCATTATAGCCTGCTAGGCTC
1 ATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGCATTATAGCCTACTAGGCTC
79819849 AAAGGCCCAAATAGT
65 AAAGGCCCAAATAGT
79819864 GTCGTACGAT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
89 3 0.04
90 67 0.96
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (90 bp):
ATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGCATTATAGCCTACTAGGCTCA
AAGGCCCAAATAGTATCTCATTGGC
Found at i:79819866 original size:45 final size:45
Alignment explanation
Indices: 79819695--79819863 Score: 223
Period size: 45 Copynumber: 3.8 Consensus size: 45
79819685 TTTCACTGGT
* *
79819695 ATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGC
1 ATTATAGCCTGCTAGGCTC-AAAGGCCCAAATAGTATCTCATCGGC
* ** * * *
79819740 ATTGTAGCCTATTAGGCTCAAAGTCCTAAATAGTATCTCATTGGC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCATCGGC
* * *
79819785 ATTATAGCTTGCTAGGCTCAAAGGCCCGAATAGTGTCTCATCGGC
1 ATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCATCGGC
79819830 ATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGT
1 ATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGT
79819864 GTCGTACGAT
Statistics
Matches: 104, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 3 0.03
45 101 0.97
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (45 bp):
ATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCATCGGC
Found at i:79827589 original size:12 final size:13
Alignment explanation
Indices: 79827572--79827603 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
79827562 ATAGCACATT
79827572 TCAAAAC-ATGCA
1 TCAAAACTATGCA
79827584 TCAAAACTATGCA
1 TCAAAACTATGCA
79827597 -CAAAACT
1 TCAAAACT
79827604 TAATATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:79827826 original size:29 final size:29
Alignment explanation
Indices: 79827784--79827842 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
79827774 TACGATAACT
79827784 GTAAAACAAACAGAAATCACACAGAGTAA
1 GTAAAACAAACAGAAATCACACAGAGTAA
79827813 GTAAAACAAACAGAAATCACACAGAGTAA
1 GTAAAACAAACAGAAATCACACAGAGTAA
79827842 G
1 G
79827843 CTACGAAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (29 bp):
GTAAAACAAACAGAAATCACACAGAGTAA
Found at i:79841686 original size:12 final size:13
Alignment explanation
Indices: 79841669--79841700 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
79841659 ATAGCACATT
79841669 TCAAAAC-ATGCA
1 TCAAAACTATGCA
79841681 TCAAAACTATGCA
1 TCAAAACTATGCA
79841694 -CAAAACT
1 TCAAAACT
79841701 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:79843567 original size:93 final size:93
Alignment explanation
Indices: 79843455--79843627 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
79843445 AACTGTTACA
* *
79843455 TTATCAATACAACCTATTTCAATATGTATTTTAACTACCATGAATCACACACAAAGCTTGACTCA
1 TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCACACACAAAGCTTGACTCA
79843520 TAAATCATTTATTAGCCACATATCATAC
66 TAAATCATTTATTAGCCACATATCATAC
*
79843548 TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCATACACAAAGCTTGACTCA
1 TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCACACACAAAGCTTGACTCA
79843613 TAAATCATTTATTAG
66 TAAATCATTTATTAG
79843628 TCATTCACTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (93 bp):
TTATCAATACAACCCATTTCAATATGTATTTTAACTACCATCAATCACACACAAAGCTTGACTCA
TAAATCATTTATTAGCCACATATCATAC
Found at i:79845641 original size:46 final size:45
Alignment explanation
Indices: 79845589--79845805 Score: 199
Period size: 46 Copynumber: 4.7 Consensus size: 45
79845579 TTTGTGTGCT
*
79845589 AGTGTAAGATATGTCTGGGACATGCATCGGCCAAAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAAAG-ATGAGAGCC
* * *
79845635 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--AAGATGAGAGCC
* ** *
79845683 AGTGTAAGACATGTTTGGGACATGCATCAACCTCAAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-AAAGATG-AGAGCC
* * * *
79845729 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGA-GATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAAAGATGA-GAGCC
*
79845773 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79845806 ACGGTTATGT
Statistics
Matches: 140, Mismatches: 19, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 14 0.10
45 14 0.10
46 56 0.40
47 28 0.20
48 24 0.17
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCAAAGATGAGAGCC
Found at i:79847667 original size:43 final size:43
Alignment explanation
Indices: 79847619--79847710 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
79847609 CAGATATGGT
* * *
79847619 CTTACATGAAATCGATTATCGATGCCACTGTCCTAGACAGGGC
1 CTTACATGAAATCGATTAACGATGCCAATGTCCCAGACAGGGC
* *
79847662 CTTACATGAAATCGATTAACGATGCCAATGTCCCAGACATGGT
1 CTTACATGAAATCGATTAACGATGCCAATGTCCCAGACAGGGC
79847705 CTTACA
1 CTTACA
79847711 CGTAATCACA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (43 bp):
CTTACATGAAATCGATTAACGATGCCAATGTCCCAGACAGGGC
Found at i:79850045 original size:79 final size:79
Alignment explanation
Indices: 79849896--79850104 Score: 258
Period size: 79 Copynumber: 2.6 Consensus size: 79
79849886 TGAAATTGTA
** * * * *
79849896 TTCTGTTTGTAAATAGAAATCAATTAAACAATTCTATTTTAGGATTTTATTCCTGCAGTCCAACA
1 TTCTGTTTCCAAACAGAAATCAATTAAACAATTATGTTTTAGGATTTTATTCCTACAGTCCAACA
79849961 AAATTT-TTTCAATT
66 AAATTTGTTT-AATT
* * * *
79849975 TTCTTTTTCCAAACAGAAATCAATTAAACAATTTTGTTTTAGGATTTTATTCCTACTGTTCAACA
1 TTCTGTTTCCAAACAGAAATCAATTAAACAATTATGTTTTAGGATTTTATTCCTACAGTCCAACA
* *
79850040 GAATTTGTTTGATT
66 AAATTTGTTTAATT
** * *
79850054 TTCTGTTTCCAAGTAAAAATCAATTAAACAATTATGTTTTAGGATTCTATT
1 TTCTGTTTCCAAACAGAAATCAATTAAACAATTATGTTTTAGGATTTTATT
79850105 ATTACCATTT
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 109 0.97
80 3 0.03
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (79 bp):
TTCTGTTTCCAAACAGAAATCAATTAAACAATTATGTTTTAGGATTTTATTCCTACAGTCCAACA
AAATTTGTTTAATT
Found at i:79850122 original size:79 final size:79
Alignment explanation
Indices: 79849912--79850138 Score: 226
Period size: 79 Copynumber: 2.9 Consensus size: 79
79849902 TTGTAAATAG
* * * * * * * *
79849912 AAATCAATTAAACAATTCTATTTTAGGATTTTATTCCT-GCAGTCCAACAAAATTT-TTTCAATT
1 AAATCAATTAAACAATTATGTTTTAGGATTCTATTACTACCA-TTCAACAGAATTTATTT-GATT
* *
79849975 TTCTTTTTCCAAACAG
64 TTCTGTTTCCAAACAA
* * * ** *
79849991 AAATCAATTAAACAATTTTGTTTTAGGATTTTATTCCTACTGTTCAACAGAATTTGTTTGATTTT
1 AAATCAATTAAACAATTATGTTTTAGGATTCTATTACTACCATTCAACAGAATTTATTTGATTTT
**
79850056 CTGTTTCCAAGTAA
66 CTGTTTCCAAACAA
* * *
79850070 AAATCAATTAAACAATTATGTTTTAGGATTCTATTATTACCATTTAATAGAATTTATTTGATTTT
1 AAATCAATTAAACAATTATGTTTTAGGATTCTATTACTACCATTCAACAGAATTTATTTGATTTT
79850135 -TGTT
66 CTGTT
79850139 GTTAACACTA
Statistics
Matches: 125, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
78 4 0.03
79 118 0.94
80 3 0.02
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (79 bp):
AAATCAATTAAACAATTATGTTTTAGGATTCTATTACTACCATTCAACAGAATTTATTTGATTTT
CTGTTTCCAAACAA
Found at i:79854542 original size:46 final size:46
Alignment explanation
Indices: 79854475--79854647 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
79854465 AACCCGCCCC
* * *
79854475 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * * * * *
79854521 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCA
* * * *
79854567 TTTCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
79854614 TAAGTGAACTCGGACTCAACTCCACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
79854648 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 63 0.64
47 32 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:79854590 original size:93 final size:93
Alignment explanation
Indices: 79854480--79854650 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
79854470 GCCCCTAAGT
* *
79854480 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79854545 CGAGTTCAGATGCCTAGTTACATTTCAC
66 CGAGTTCAGATGCCTAGTTACATTTCAC
* *
79854573 GAACTC-GAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCC
1 GAACTCAG-ACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
79854637 ACGAGTTCGGATGC
65 ACGAGTTCAGATGC
79854651 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:79861721 original size:93 final size:92
Alignment explanation
Indices: 79861563--79861732 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 92
79861553 GCCCCTAAGT
*
79861563 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
79861628 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
*
79861655 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79861720 CGAGTTCGGATGC
65 CGAGTTCGGATGC
79861733 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 27 0.36
93 48 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:79861748 original size:46 final size:46
Alignment explanation
Indices: 79861557--79861741 Score: 159
Period size: 45 Copynumber: 4.0 Consensus size: 46
79861547 TAACCCGCCC
* * * * *
79861557 CTAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
79861603 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * * *
79861650 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCAT
79861696 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
79861741 C
1 C
79861742 CTAGTGACAT
Statistics
Matches: 113, Mismatches: 13, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 34 0.30
46 30 0.27
47 30 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:79864654 original size:24 final size:24
Alignment explanation
Indices: 79864618--79864755 Score: 251
Period size: 24 Copynumber: 5.8 Consensus size: 24
79864608 CTTATTATGT
**
79864618 TCGCAC-CATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
79864641 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79864665 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79864689 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79864713 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79864737 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
79864756 TATTTCCAGC
Statistics
Matches: 112, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
23 6 0.05
24 106 0.95
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:79864780 original size:29 final size:29
Alignment explanation
Indices: 79864738--79864810 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
79864728 CATAGTAAAT
*
79864738 CGCACACATAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
79864767 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
79864796 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
79864811 TCTCGTCACC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:79872569 original size:24 final size:24
Alignment explanation
Indices: 79872542--79872632 Score: 164
Period size: 24 Copynumber: 3.8 Consensus size: 24
79872532 CTTATTATGT
**
79872542 TCGCACACATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
79872566 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79872590 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79872614 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
79872633 TATCCAGCAC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:79872656 original size:26 final size:28
Alignment explanation
Indices: 79872615--79872685 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
79872605 CATAGTAAAT
79872615 CGCACACATAGTGCCATATA-TCCAGCA
1 CGCACACATAGTGCCATATATTCCAGCA
79872642 CGCACAC-TAGTGCCATATATTTCCAGCA
1 CGCACACATAGTGCCATATA-TTCCAGCA
*
79872670 CGCACACTTAGTGCCA
1 CGCACACATAGTGCCA
79872686 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 12 0.29
27 7 0.17
28 14 0.34
29 8 0.20
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.21
Consensus pattern (28 bp):
CGCACACATAGTGCCATATATTCCAGCA
Found at i:79880463 original size:24 final size:24
Alignment explanation
Indices: 79880427--79880516 Score: 155
Period size: 24 Copynumber: 3.8 Consensus size: 24
79880417 CTTATTATGT
**
79880427 TCGCAC-CATAGTGCCATAGCGAA
1 TCGCACACATAGTGCCATAGTAAA
79880450 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79880474 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
79880498 TCGCACACATAGTGCCATA
1 TCGCACACATAGTGCCATA
79880517 TATCCAGCAC
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
23 6 0.09
24 58 0.91
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:79880537 original size:27 final size:28
Alignment explanation
Indices: 79880499--79880570 Score: 119
Period size: 29 Copynumber: 2.6 Consensus size: 28
79880489 CATAGTAAAT
*
79880499 CGCACACATAGTGCCATATA-TCCAGCA
1 CGCACACTTAGTGCCATATATTCCAGCA
79880526 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATA-TTCCAGCA
79880555 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
79880571 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 19 0.45
29 23 0.55
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCCAGCA
Found at i:79890446 original size:21 final size:21
Alignment explanation
Indices: 79890407--79890446 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79890397 ATTGTTGGAA
*
79890407 GTAACAATGAAATGGTAAAAC
1 GTAACAAAGAAATGGTAAAAC
* *
79890428 GTAACAAAGACATGTTAAA
1 GTAACAAAGAAATGGTAAA
79890447 TTCAAGATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.10, G:0.17, T:0.20
Consensus pattern (21 bp):
GTAACAAAGAAATGGTAAAAC
Found at i:79893205 original size:13 final size:13
Alignment explanation
Indices: 79893187--79893211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79893177 ATATTCTAAA
79893187 ACACAAAAATAAC
1 ACACAAAAATAAC
79893200 ACACAAAAATAA
1 ACACAAAAATAA
79893212 TATTATAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.20, G:0.00, T:0.08
Consensus pattern (13 bp):
ACACAAAAATAAC
Found at i:79895902 original size:6 final size:6
Alignment explanation
Indices: 79895891--79895925 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
79895881 CATATCATAT
79895891 CATTGA CATTGA CATTGA CATTGA CATTGA CATTG
1 CATTGA CATTGA CATTGA CATTGA CATTGA CATTG
79895926 TCACATCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (6 bp):
CATTGA
Found at i:79903782 original size:29 final size:29
Alignment explanation
Indices: 79903747--79903820 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
79903737 GTTGTGAGAT
* *
79903747 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
79903776 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
79903805 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
79903821 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:79918704 original size:27 final size:27
Alignment explanation
Indices: 79918628--79918717 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
79918618 TTTAGTTTAC
* *
79918628 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
79918655 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
79918682 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
79918709 TAAAATTAC
1 TAAAATTAC
79918718 CGTTTTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:79918726 original size:27 final size:26
Alignment explanation
Indices: 79918669--79918906 Score: 149
Period size: 27 Copynumber: 8.8 Consensus size: 26
79918659 AATACTGAAA
* ***
79918669 TACCCTCGATTTGTAAAATTACTGAAA
1 TACCCTCGATTT-TAAAATTACCGTTT
* *
79918696 TACCTTCGACTTGTAAAATTACCGTTT
1 TACCCTCGA-TTTTAAAATTACCGTTT
*
79918723 TACCCTCGA-TTTACAGAATTACTGTTT
1 TACCCTCGATTTTA-A-AATTACCGTTT
*
79918750 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTT-TAAAATTACCGTTT
* *
79918777 TACCCTTGA-TTTACAGAATTACTGTTT
1 TACCCTCGATTTTA-A-AATTACCGTTT
* *
79918804 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTT-TAAAATTACCGTTT
* * **
79918831 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTT-TAAAATTACCGTTT
* * * **
79918858 TTCTCTTGA-TTTACAGAATTACTATTT
1 TACCCTCGATTTTA-A-AATTACCGTTT
*
79918885 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTT-TAAAATTAC
79918907 AAAAATACCC
Statistics
Matches: 165, Mismatches: 33, Indels: 26
0.74 0.15 0.12
Matches are distributed among these distances:
25 7 0.04
26 6 0.04
27 137 0.83
28 11 0.07
29 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (26 bp):
TACCCTCGATTTTAAAATTACCGTTT
Found at i:79918727 original size:54 final size:54
Alignment explanation
Indices: 79918709--79918906 Score: 261
Period size: 54 Copynumber: 3.7 Consensus size: 54
79918699 CTTCGACTTG
79918709 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
* *
79918763 TAAAATTACCATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
* * * * * * * *
79918817 CAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
* * ** *
79918871 CAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
79918907 AAAAATACCC
Statistics
Matches: 125, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 125 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (54 bp):
TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
Found at i:79918754 original size:81 final size:82
Alignment explanation
Indices: 79918669--79918905 Score: 263
Period size: 81 Copynumber: 2.9 Consensus size: 82
79918659 AATACTGAAA
* *
79918669 TACCCTCGATTTGTAAAATTACTGA-AATA-CCTTCGACTTGTA-A-AATTACCGTTTTACCCTC
1 TACCCTCGATTTATAAAATTACTCATAATACCCTT-GA-TT-TACAGAATTACCGTTTTACCCTC
*
79918730 GATTTACAGAATTA-CTGTTT
63 GATTTACAAAATTATC-GTTT
** *
79918750 TACCCTCGATTTATAAAATTAC-CATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACTCATAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGAT
79918814 TTACAAAATTATCGTTT
66 TTACAAAATTATCGTTT
* * ** * * **
79918831 TACCGTCGATTTATAGAATTACT-ATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACTCATAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGAT
79918895 TTACAAAATTA
66 TTACAAAATTA
79918906 CAAAAATACC
Statistics
Matches: 139, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
79 2 0.01
80 4 0.03
81 128 0.92
82 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (82 bp):
TACCCTCGATTTATAAAATTACTCATAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGAT
TTACAAAATTATCGTTT
Found at i:79918915 original size:27 final size:27
Alignment explanation
Indices: 79918885--79918997 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
79918875 ATTACTATTT
* *
79918885 TACCCTCGATTTACAAAATTACAAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
79918912 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
79918939 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
79918966 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCGATTT-ATAAAATTACCAAAA
79918993 TACCC
1 TACCC
79918998 CTGTAGGGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 2 0.03
27 71 0.97
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:79918932 original size:54 final size:54
Alignment explanation
Indices: 79918669--79918933 Score: 201
Period size: 54 Copynumber: 4.9 Consensus size: 54
79918659 AATACTGAAA
** * * * **
79918669 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACTATTT
* *** *
79918723 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACTATTT
* * *** * *
79918777 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACT-ATTT
* * * ** * * * * *
79918831 TACCGTCGATTTATAGAATTACT-ATTTTTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGA-AATACCCTCGATTTATAAAATTACTATTT
** * *
79918885 TACCCTCGATTTACAAAATTACAAAAATACCCTCAATTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTATAAAATTAC
79918934 CAAAATACCC
Statistics
Matches: 171, Mismatches: 36, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
54 169 0.99
55 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACTATTT
Found at i:79918933 original size:81 final size:80
Alignment explanation
Indices: 79918720--79918906 Score: 293
Period size: 81 Copynumber: 2.3 Consensus size: 80
79918710 AAAATTACCG
*
79918720 TTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTG
1 TTTTACCCTCGATTTACAAAATTAC-GTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTG
*
79918785 ATTTACAGAATTACTG
65 ATTTACAGAATTACTA
* * * * *
79918801 TTTTACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTTCTCTTG
1 TTTTACCCTCGATTTACAAAATTA-CGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTG
79918866 ATTTACAGAATTACTA
65 ATTTACAGAATTACTA
79918882 TTTTACCCTCGATTTACAAAATTAC
1 TTTTACCCTCGATTTACAAAATTAC
79918907 AAAAATACCC
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
80 1 0.01
81 96 0.98
82 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (80 bp):
TTTTACCCTCGATTTACAAAATTACGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGA
TTTACAGAATTACTA
Found at i:79918943 original size:54 final size:54
Alignment explanation
Indices: 79918885--79918998 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
79918875 ATTACTATTT
*
79918885 TACCCTCGA-TTTACAAAATTACAAAAATACCC-TCAATTTGTAAAATTACCAAAA
1 TACCC-CGAGTTTACAAAATTACAAAAATACCCAT-AATTTGAAAAATTACCAAAA
* ** * ** *
79918939 TACCCCTAGTTTGTAAAATTACCAAAATACCCATGGTTTGAAAAATTACTAAAA
1 TACCCCGAGTTTACAAAATTACAAAAATACCCATAATTTGAAAAATTACCAAAA
79918993 TACCCC
1 TACCCC
79918999 TGTAGGGTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.04
54 47 0.94
55 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (54 bp):
TACCCCGAGTTTACAAAATTACAAAAATACCCATAATTTGAAAAATTACCAAAA
Found at i:79919009 original size:54 final size:54
Alignment explanation
Indices: 79918899--79919025 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
79918889 CTCGATTTAC
* **
79918899 AAAATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
* ** *
79918953 AAAATTACCAAAATACCCAT-GGTTTGAAAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACAAAAATACCC-TCAATTTGAAAAATTACCAAAATACCCCTAGT-GGGT
**
79919007 AAAATTACTGAAATACCCT
1 AAAATTACAAAAATACCCT
79919026 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
53 3 0.05
54 58 0.94
55 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
Found at i:79919010 original size:27 final size:27
Alignment explanation
Indices: 79918924--79919043 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
79918914 CCCTCAATTT
**
79918924 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
79918951 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
79918978 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
79919005 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
79919032 GTAAAATTACCA
1 GTAAAATTACCA
79919044 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:79919695 original size:28 final size:28
Alignment explanation
Indices: 79919662--79919758 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
79919652 GCGTAGATCA
79919662 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
79919690 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
* *
79919718 CGAAATTACCCTTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
79919746 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
79919759 GGGTTTAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 3 0.05
27 7 0.11
28 53 0.84
ACGTcount: A:0.45, C:0.25, G:0.08, T:0.22
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:79925881 original size:40 final size:40
Alignment explanation
Indices: 79925716--79925896 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
79925706 TTTGAATGGT
* * * *
79925716 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA
* *
79925757 ATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAA
* * * *
79925797 ATCCGAGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAA
* *
79925837 AACCGGGTTAAGTCCCGAGGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-A
* *
79925878 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
79925897 ACAATCGAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
40 90 0.75
41 30 0.25
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAA
Found at i:79933858 original size:40 final size:40
Alignment explanation
Indices: 79933767--79933947 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
79933757 TTTGAATGGT
* * * *
79933767 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
79933808 ATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
79933848 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
79933888 AACCGGGTTAAGTCCCGAGGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
79933929 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
79933948 ACAATCAAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 94 0.76
41 29 0.24
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:79938381 original size:94 final size:94
Alignment explanation
Indices: 79938263--79938436 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 94
79938253 TCTCAAGTCT
* ** * ** *
79938263 ATGCCATGTCCCAGACAGGGTCTTACACTGACTATCATTTTGTAGTTGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAAACAGGGTCTTACACTGACTATCATAATGCAGCCGATGCATGTCCCAAACAT
79938328 GTCTTACACTAGCTCTCGTCTCAGTGCCG
66 GTCTTACACTAGCTCTCGTCTCAGTGCCG
* * *
79938357 ATGCCATGTCCCAAAC-GTGGTCTTACACTGGCTCTCATAATGCGGCCGATGCATGTCCCAAACA
1 ATGCCATGTCCCAAACAG-GGTCTTACACTGACTATCATAATGCAGCCGATGCATGTCCCAAACA
79938421 TGTCTTACACTAGCTC
65 TGTCTTACACTAGCTC
79938437 ACACACAAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
93 1 0.01
94 68 0.99
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (94 bp):
ATGCCATGTCCCAAACAGGGTCTTACACTGACTATCATAATGCAGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCTCTCGTCTCAGTGCCG
Found at i:79938384 original size:48 final size:46
Alignment explanation
Indices: 79938310--79938436 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 46
79938300 TTTTGTAGTT
* * *
79938310 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGT-CT-CAGTGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATGC-G-GCC
* *
79938356 GATGCCATGTCCCAAACGTGGTCTTACACTGGCTCTCATAATGCGGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATAATGCGGCC
79938404 GATGCATGTCCCAAACATGTCTTACACTAGCTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTC
79938437 ACACACAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
46 18 0.26
47 25 0.36
48 24 0.34
49 2 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATGCGGCC
Found at i:79945917 original size:46 final size:46
Alignment explanation
Indices: 79945817--79946038 Score: 198
Period size: 46 Copynumber: 4.7 Consensus size: 46
79945807 TATCTCAAGT
* * ** * * * *
79945817 CGATGTCATGTCCCAGACAGGGTCTTACATTAACTATCATCTTGTAGC
1 CGATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCGTCTCGTGGC
* *
79945865 CAATGCATGTTCCAGACATGTCTTACACTGGCT-TACGTCTCGTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCGTGGC
* *
79945911 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTC-GTGGC
* * * *
79945957 CGATGCCATGTTCCAGACATGGTCTTACACGGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCGTGGC
* *
79946005 CGATGCATGTCCCAGACATGTCCTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
79946039 ACACACAAAT
Statistics
Matches: 144, Mismatches: 23, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 74 0.51
47 41 0.28
48 27 0.19
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCGTGGC
Found at i:79949829 original size:42 final size:42
Alignment explanation
Indices: 79949782--79949894 Score: 118
Period size: 43 Copynumber: 2.7 Consensus size: 42
79949772 AGTACAATAC
* ** *
79949782 CAATGCCATATCCCAGATATGGTCTTATATGGGATCTCAAAT
1 CAATGCCATATCCCAGATATGGTCTTACATGAAATCCCAAAT
* * *
79949824 CAATGCCAATAGCCCAGCTATGGTCTTACATGAAATCCCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACATGAAATCCCAAAT
** * *
79949867 TGATGCCATGTCCCAGATATAGTCTTAC
1 CAATGCCATATCCCAGATATGGTCTTAC
79949895 TCCTAAACTC
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACATGAAATCCCAAAT
Found at i:79951580 original size:13 final size:13
Alignment explanation
Indices: 79951562--79951586 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79951552 CTCGGAAGGG
79951562 ACACGCCCGTGTC
1 ACACGCCCGTGTC
79951575 ACACGCCCGTGT
1 ACACGCCCGTGT
79951587 TTCAGTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.44, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTC
Found at i:79957979 original size:42 final size:44
Alignment explanation
Indices: 79957867--79958020 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 44
79957857 AGCTCATACA
* * * *
79957867 ATGCCAACGTCCCAGAC-GTGGTCTTACA-TTTAACCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGTAAATCAAATATCG
* *
79957910 ATGCCACTGTCCCAGATAGGGTCTTACACG-AAATCAAATAT-G
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAAATCAAATATCG
* * * *
79957952 ATGTCAATGTCCCAGACATGGTTTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAAATCA-AATATCG
*
79957996 ATGCCAACGTCCCAGAC-GTGGTCTT
1 ATGCCAATGTCCCAGACAG-GGTCTT
79958021 CCTCGAAAAC
Statistics
Matches: 89, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 26 0.29
43 39 0.44
44 24 0.27
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAAATCAAATATCG
Found at i:79964813 original size:20 final size:18
Alignment explanation
Indices: 79964779--79964816 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
79964769 GAAAAAAAAT
79964779 GGAGAGAAAAATGAGAGA
1 GGAGAGAAAAATGAGAGA
79964797 GGAGAAGAAAGAATGAGAGA
1 GGAG-AGAAA-AATGAGAGA
79964817 ATGTTGTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
20 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.05
Consensus pattern (18 bp):
GGAGAGAAAAATGAGAGA
Found at i:79967356 original size:43 final size:43
Alignment explanation
Indices: 79967294--79967396 Score: 111
Period size: 42 Copynumber: 2.4 Consensus size: 43
79967284 TACCAGACGT
* * *
79967294 GGTCTTACATGT-AACCAAATATCGATGACACTATCCAAGACAG
1 GGTCTTACACGTAAATCAAATAT-GATGACAATATCCAAGACAG
* * * * *
79967337 GGTCTTCCACG-AAATCAAATATGATGTCAATGTCCCAGACAT
1 GGTCTTACACGTAAATCAAATATGATGACAATATCCAAGACAG
79967379 GGTCTTACACGTAAATCA
1 GGTCTTACACGTAAATCA
79967397 TAAGTCGATG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 25 0.51
43 24 0.49
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAAATATGATGACAATATCCAAGACAG
Found at i:79967420 original size:44 final size:45
Alignment explanation
Indices: 79967359--79967443 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 45
79967349 AATCAAATAT
* *
79967359 GATGTCAATGTCCCAGACATGGTCTTACACGTAAAT-CATAAGTC
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAAATACATAAGTC
* *
79967403 GATGCCAATGTCTCAGACGTGGTCTTACACGAAAATACATA
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAAATACATA
79967444 TCGATCCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 32 0.89
45 4 0.11
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (45 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGAAAATACATAAGTC
Found at i:79980919 original size:54 final size:55
Alignment explanation
Indices: 79980807--79980923 Score: 130
Period size: 54 Copynumber: 2.2 Consensus size: 55
79980797 AGGCATAGAA
* * * *
79980807 AGTTACAC-AGCTTGGCGACACAACCATGTGACCCTAAACTACAAGGTCACGGTG
1 AGTTACACGAGCTTGGCCACACAACCATGTGACCCTAAACTACAAGATCACAGTC
** * * * *
79980861 AGTTACACGA-CTTGGCCACACGGCCATGTGACCTTATACTGCACGATCACAGTC
1 AGTTACACGAGCTTGGCCACACAACCATGTGACCCTAAACTACAAGATCACAGTC
79980915 AGTTACACG
1 AGTTACACG
79980924 GTTAGCGTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 51 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (55 bp):
AGTTACACGAGCTTGGCCACACAACCATGTGACCCTAAACTACAAGATCACAGTC
Found at i:79984349 original size:28 final size:28
Alignment explanation
Indices: 79984310--79984369 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
79984300 GGAAATGTGT
79984310 AAGT-GTACATAATCGCAACAAGTAATA
1 AAGTGGTACATAATCGCAACAAGTAATA
79984337 AAGTGGTACATAATCGCAACAAGTAATA
1 AAGTGGTACATAATCGCAACAAGTAATA
79984365 AAGTG
1 AAGTG
79984370 ACAAGTAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.12
28 28 0.88
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.22
Consensus pattern (28 bp):
AAGTGGTACATAATCGCAACAAGTAATA
Found at i:79985278 original size:20 final size:20
Alignment explanation
Indices: 79985253--79985301 Score: 89
Period size: 20 Copynumber: 2.4 Consensus size: 20
79985243 CAAATCCGGT
79985253 GTTTCTCCGAGGCTTGACTA
1 GTTTCTCCGAGGCTTGACTA
79985273 GTTTCTCCGAGGCTTGACTA
1 GTTTCTCCGAGGCTTGACTA
79985293 GTTTGCTCC
1 GTTT-CTCC
79985302 ACTCCTCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 24 0.86
21 4 0.14
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.37
Consensus pattern (20 bp):
GTTTCTCCGAGGCTTGACTA
Found at i:79986780 original size:11 final size:10
Alignment explanation
Indices: 79986764--79986797 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
79986754 GTACATATGC
79986764 TCTTTTTTTGT
1 TCTTTTTTT-T
79986775 TCTTTTTCTTT
1 TCTTTTT-TTT
79986786 TCTTTTTTTT
1 TCTTTTTTTT
79986796 TC
1 TC
79986798 ATGAGCATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.23
11 15 0.68
12 2 0.09
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:79988071 original size:3 final size:3
Alignment explanation
Indices: 79988063--79988094 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
79988053 CTCTATGGGA
79988063 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
79988095 AGGATCCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:79991426 original size:27 final size:27
Alignment explanation
Indices: 79991372--79991723 Score: 220
Period size: 27 Copynumber: 13.3 Consensus size: 27
79991362 TTAGTTTACC
* * *
79991372 AAATTA-CTAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
79991398 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
79991425 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
** * * *
79991452 AAATTACTGAAATA----AGA-TAAAA
1 AAATTACCAAAATACCCTCGATTTATA
*** *
79991474 AAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
** * * *
79991501 AAATTACTGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
** **
79991528 AAATTACCCTAATACCCTCGATCAATA
1 AAATTACCAAAATACCCTCGATTTATA
* *
79991555 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
79991582 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
79991609 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * * *
79991636 AAATTACTAAAATACCCTTGGTTTATT
1 AAATTACCAAAATACCCTCGATTTATA
* * *
79991663 AAATCACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* *
79991690 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
79991717 AAATTAC
1 AAATTAC
79991724 TGAAAGACCC
Statistics
Matches: 252, Mismatches: 63, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
22 11 0.04
23 2 0.01
26 9 0.04
27 230 0.91
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:79991546 original size:54 final size:54
Alignment explanation
Indices: 79991486--79991761 Score: 275
Period size: 54 Copynumber: 5.1 Consensus size: 54
79991476 ATTACCATTT
** * ** **
79991486 TACCCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCCTAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
** *
79991540 TACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
* * *
79991594 TACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
* * ** * *
79991648 TACCCTTGGTTTATTAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
* ** ** * * * * *
79991702 TACCC-CTAGTTTGTAAAATTACTGAAAGACCCCTGATTTGTGAAATTATCGAAA
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
79991756 TACCCT
1 TACCCT
79991762 TATAGGGTAG
Statistics
Matches: 185, Mismatches: 35, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
54 185 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAA
Found at i:79991638 original size:81 final size:81
Alignment explanation
Indices: 79991500--79991762 Score: 294
Period size: 81 Copynumber: 3.2 Consensus size: 81
79991490 CTCGATTTAC
** ** * *** *
79991500 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCCTAATA-CCCTCGATCAATAAAATTACCA
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACTA
79991564 AAATACCCCTGGTTTGT
65 AAATACCCCTGGTTTGT
79991581 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
* *
79991646 AATACCCTTGGTTTAT
66 AATACCCCTGGTTTGT
* * * * ** * *
79991662 TAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTGA
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
* *
79991727 AAGACCCCTGATTTGT
66 AATACCCCTGGTTTGT
* * *
79991743 GAAATTATCGAAATACCCTT
1 AAAATTACCAAAATACCCTT
79991763 ATAGGGTAGA
Statistics
Matches: 153, Mismatches: 28, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 149 0.97
82 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAA
AATACCCCTGGTTTGT
Found at i:79991733 original size:27 final size:27
Alignment explanation
Indices: 79991553--79991760 Score: 263
Period size: 27 Copynumber: 7.7 Consensus size: 27
79991543 CCTCGATCAA
79991553 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
79991580 TAAAATTACCAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
*
79991607 CAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * *
79991634 TAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
* * *
79991661 TTAAATCACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
79991688 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
** * *
79991715 TAAAATTACTGAAAGACCCCTGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * *
79991742 TGAAATTATCGAAATACCC
1 TAAAATTACCAAAATACCC
79991761 TTATAGGGTA
Statistics
Matches: 155, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:79991776 original size:81 final size:81
Alignment explanation
Indices: 79991553--79991787 Score: 211
Period size: 81 Copynumber: 2.9 Consensus size: 81
79991543 CCTCGATCAA
* * * * * * * * ****
79991553 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA
1 TAAAATTACTAAAAGACCCCTGATTTATGAAATCACCAAAATACCCCTAGTGGGTAAAATTACCA
*
79991618 AAATACCCCTGGTTTG
66 AAATACCCCTAGTTTG
* * * * **
79991634 TAAAATTACTAAAATACCCTTGGTTTATTAAATCACCAAAATACCCCTAGTTTGTAAAATTACCA
1 TAAAATTACTAAAAGACCCCTGATTTATGAAATCACCAAAATACCCCTAGTGGGTAAAATTACCA
79991699 AAATACCCCTAGTTTG
66 AAATACCCCTAGTTTG
* * * * * * *
79991715 TAAAATTACTGAAAGACCCCTGATTTGTGAAATTATCGAAATACCCTTA-TAGGGTAGAATTACC
1 TAAAATTACTAAAAGACCCCTGATTTATGAAATCACCAAAATACCCCTAGT-GGGTAAAATTACC
*
79991779 GAAATACCC
65 AAAATACCC
79991788 TTGTAGGGTA
Statistics
Matches: 129, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
80 1 0.01
81 128 0.99
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (81 bp):
TAAAATTACTAAAAGACCCCTGATTTATGAAATCACCAAAATACCCCTAGTGGGTAAAATTACCA
AAATACCCCTAGTTTG
Found at i:79992097 original size:26 final size:27
Alignment explanation
Indices: 79991745--79992099 Score: 475
Period size: 27 Copynumber: 13.3 Consensus size: 27
79991735 TGATTTGTGA
* * *
79991745 AATTATCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79991772 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79991799 AATTACCAGAAA-ACCCCTGTAGGGTAG
1 AATTACC-GAAATACCCCTGTAGGGTAG
* *
79991826 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79991853 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
79991880 AATTATCGCAATACCCCTATACGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
79991907 AATTACCGAAATACCCCTGTAGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79991933 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
79991960 AATTACCAAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
79991986 AATTATCGCAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
79992013 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
79992040 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
79992067 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
79992093 AATTACC
1 AATTACC
79992100 ATTTTTCCCT
Statistics
Matches: 290, Mismatches: 34, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
26 66 0.23
27 220 0.76
28 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:79992779 original size:27 final size:27
Alignment explanation
Indices: 79992749--79992850 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
79992739 ATTCTGTTAT
* *
79992749 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
79992776 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
79992803 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
79992830 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
79992851 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:79993031 original size:31 final size:31
Alignment explanation
Indices: 79992987--79993097 Score: 125
Period size: 31 Copynumber: 3.5 Consensus size: 31
79992977 TTGCATTCAC
* *
79992987 ATTCTGATTTTTGATTCTGTTACCTCATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTAATACTG
* * *
79993019 ATTCTGGTTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* **
79993050 ATT-TCGATTCTGATTCTGTCACCTAATTTTG
1 ATTCT-GATTCTGATTCTGTTACCTAATACTG
79993081 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
79993098 AGTTCTGATA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
30 1 0.01
31 61 0.88
32 7 0.10
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTAATACTG
Found at i:79995071 original size:27 final size:26
Alignment explanation
Indices: 79995040--79995134 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 26
79995030 TTAGTTTACC
*
79995040 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTAC-GAAATACCCTCGATTTGTA
* *
79995067 AAATTACCAAAGTACCC-CTGATTTATA
1 AAATTACGAAA-TACCCTC-GATTTGTA
*
79995094 AAATTACGCAAATATCCTCGATTTGTA
1 AAATTACG-AAATACCCTCGATTTGTA
79995121 AAATTACTGAAATA
1 AAATTAC-GAAATA
79995135 AGATAGAATT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.07
27 48 0.84
28 5 0.09
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGATTTGTA
Found at i:79995213 original size:27 final size:27
Alignment explanation
Indices: 79995179--79995377 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
79995169 CCTCGATCAA
79995179 TAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
79995206 TAAGATTACCAAAATACCCCTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
79995233 CAAAATTACCAAAAATACCCCTAGTTTG
1 TAAAATTACC-AAAATACCCCTGGTTTG
* * *
79995261 TAAAATTACTAAAATACCCTTTGGTTTA
1 TAAAATTACCAAAATACCC-CTGGTTTG
* *
79995289 TAAAATTACCAAAATACCCTTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * *
79995316 TAAAATTATCAAAATATCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* * *
79995343 TAAAATTATCGAAATACCCCTGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
79995370 TGAAATTA
1 TAAAATTA
79995378 TTGAAATACC
Statistics
Matches: 148, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
27 102 0.69
28 46 0.31
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:79995269 original size:55 final size:54
Alignment explanation
Indices: 79995178--79995377 Score: 249
Period size: 55 Copynumber: 3.7 Consensus size: 54
79995168 CCCTCGATCA
* *
79995178 ATAAAATTACCAAAATACCCCTGGTTTGTAAGATTACCAAAATACCCCTGGTTT
1 ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTT
* * *
79995232 ACAAAATTACCAAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGGTTT
1 ATAAAATTACC-AAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CTGGTTT
* * * *
79995288 ATAAAATTACCAAAATACCCTTAGTTTGTAAAATTATCAAAATATCCCTAGTTT
1 ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTT
* * * *
79995342 GTAAAATTATCGAAATACCCCT-GATTTGTGAAATTA
1 ATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTA
79995378 TTGAAATACC
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
53 1 0.01
54 44 0.35
55 65 0.52
56 16 0.13
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTT
Found at i:79995427 original size:27 final size:27
Alignment explanation
Indices: 79995380--79995863 Score: 702
Period size: 27 Copynumber: 18.0 Consensus size: 27
79995370 TGAAATTATT
79995380 GAAATA-CCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79995406 GAAATACCCTTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79995433 GGAATACCCCTGTAGGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995460 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79995487 GCAATACCCCTTTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995514 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995541 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79995568 GAAATATCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995595 GCAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79995622 AAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995649 GAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995676 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995703 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79995730 GAAATACCCCTGTAGTGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995757 GCAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79995784 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79995811 AAAATACCCCTGTAGGGTGGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
79995838 GAGATA-CCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
79995864 ATTTTACCCC
Statistics
Matches: 408, Mismatches: 49, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
26 22 0.05
27 386 0.95
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:79996350 original size:22 final size:22
Alignment explanation
Indices: 79996290--79996354 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
79996280 TTAAAGCCCT
* *
79996290 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
79996312 CT-ACATATAGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
79996334 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
79996355 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:79996543 original size:27 final size:27
Alignment explanation
Indices: 79996513--79996614 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
79996503 ATTCTGTTAT
* *
79996513 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
79996540 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
79996567 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * **
79996594 GTGACTCTATCACAATATCTG
1 GTGGCTATGCCACAATATCTG
79996615 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:79996608 original size:54 final size:52
Alignment explanation
Indices: 79996505--79996614 Score: 130
Period size: 54 Copynumber: 2.1 Consensus size: 52
79996495 TGCCACGTAT
* * * * *
79996505 TCTGTTATGTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATA
1 TCTGTTATGTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCAC-AATA
* * *
79996558 TCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTATCACAATA
1 TCTGTTAT-GTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCACAATA
79996611 TCTG
1 TCTG
79996615 ATAACTGAGC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 15 0.31
54 33 0.69
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (52 bp):
TCTGTTATGTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCACAATA
Found at i:79996795 original size:31 final size:31
Alignment explanation
Indices: 79996751--79996861 Score: 125
Period size: 31 Copynumber: 3.5 Consensus size: 31
79996741 TTGCATTCAC
79996751 ATTCTGATTTTTGATTCTGTTACCTCATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTCATACTG
* *
79996783 ATTCTGGTTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTCATACTG
* * * * **
79996814 ATTTTGATTCTGATTCTGTCACCTAATTTTG
1 ATTCTGATTTTGATTCTGTTACCTCATACTG
79996845 ATTCTGATTCTT-ATTCT
1 ATTCTGATT-TTGATTCT
79996862 AGTTCTGATA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
31 60 0.90
32 7 0.10
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTCATACTG
Found at i:80006906 original size:27 final size:27
Alignment explanation
Indices: 80006854--80006909 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
80006844 ATAATTTAAG
*
80006854 TACAATTTAATTATTTTATAATAATTA
1 TACAATTTAATTATTTTATAAGAATTA
80006881 TACAATTTAATTATTTTATAAGAATTA
1 TACAATTTAATTATTTTATAAGAATTA
80006908 TA
1 TA
80006910 TATTTTTGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (27 bp):
TACAATTTAATTATTTTATAAGAATTA
Found at i:80014843 original size:19 final size:19
Alignment explanation
Indices: 80014795--80014833 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
80014785 GTGATCCTTG
80014795 TTTCTAAAATTTTCATATT
1 TTTCTAAAATTTTCATATT
80014814 TTTCTAAAATTTTC-TATT
1 TTTCTAAAATTTTCATATT
80014832 TT
1 TT
80014834 GTTTCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.28, C:0.10, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTCTAAAATTTTCATATT
Found at i:80017316 original size:28 final size:28
Alignment explanation
Indices: 80017285--80017344 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
80017275 TTTGGTGGAT
80017285 ATTCCACATAAGATAGTCCATGGCAGAC
1 ATTCCACATAAGATAGTCCATGGCAGAC
* *
80017313 ATTCCACGTAAGATAGTCCATGGCGGAC
1 ATTCCACATAAGATAGTCCATGGCAGAC
80017341 -TTCC
1 ATTCC
80017345 TTTTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (28 bp):
ATTCCACATAAGATAGTCCATGGCAGAC
Found at i:80026421 original size:2 final size:2
Alignment explanation
Indices: 80026416--80026447 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80026406 TATATATATA
80026416 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
80026448 GAGTAAAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:80030296 original size:2 final size:2
Alignment explanation
Indices: 80030289--80030323 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80030279 TTTTCTAGAT
80030289 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80030324 TCTATTTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:80030913 original size:22 final size:21
Alignment explanation
Indices: 80030885--80030938 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
80030875 GATTTCACAA
80030885 TTTTTCTAATTTTATA-CTAATT
1 TTTTTCTAATTTTATAGCT--TT
*
80030907 TTTTTCT-ATATTATAGCTTT
1 TTTTTCTAATTTTATAGCTTT
*
80030927 TTTTTTTAATTT
1 TTTTTCTAATTT
80030939 AGTCTTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 8 0.30
21 10 0.37
22 9 0.33
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (21 bp):
TTTTTCTAATTTTATAGCTTT
Found at i:80038812 original size:31 final size:31
Alignment explanation
Indices: 80038761--80038874 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 31
80038751 TATAAAATTA
80038761 ATAATACATAAGATATTTTAAA-AACTTAAAT
1 ATAATACATAAGATATTTTAAATAA-TTAAAT
*
80038792 ATAATA-ATAA-ATTATATTTAAATAATTTAAT
1 ATAATACATAAGA-TAT-TTTAAATAATTAAAT
*
80038823 ATAATGTTACATAAAATA-TTTAAATAATTTAACAT
1 ATAA---TACATAAGATATTTTAAATAA-TTAA-AT
*
80038858 AATAATACATAAAATAT
1 -ATAATACATAAGATAT
80038875 AAATTAATTT
Statistics
Matches: 69, Mismatches: 2, Indels: 21
0.75 0.02 0.23
Matches are distributed among these distances:
29 1 0.01
30 7 0.10
31 21 0.30
32 2 0.03
33 20 0.29
34 5 0.07
35 8 0.12
36 5 0.07
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (31 bp):
ATAATACATAAGATATTTTAAATAATTAAAT
Found at i:80038845 original size:33 final size:33
Alignment explanation
Indices: 80038759--80038887 Score: 135
Period size: 33 Copynumber: 4.0 Consensus size: 33
80038749 TATATAAAAT
* *
80038759 TAATAATACATAAGATATTTTAAA-AACTTAA-A
1 TAATAATACATAAAATA-TTTAAATAATTTAACA
*
80038791 T-ATAATA-ATAAATTATATTTAAATAATTTAATA
1 TAATAATACATAAA--ATATTTAAATAATTTAACA
**
80038824 TAATGTTACATAAAATATTTAAATAATTTAACA
1 TAATAATACATAAAATATTTAAATAATTTAACA
80038857 TAATAATACATAAAATA--TAAATTAATTTAAC
1 TAATAATACATAAAATATTTAAA-TAATTTAAC
80038888 TTTTATATAC
Statistics
Matches: 83, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
30 4 0.05
31 16 0.19
32 19 0.23
33 35 0.42
34 4 0.05
35 5 0.06
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (33 bp):
TAATAATACATAAAATATTTAAATAATTTAACA
Found at i:80038857 original size:23 final size:24
Alignment explanation
Indices: 80038811--80038864 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 24
80038801 AATTATATTT
80038811 AAATAATTTAATATAATGTTACATA
1 AAAT-ATTTAATATAATGTTACATA
80038836 AAATATTTAA-ATAAT-TTAACATA
1 AAATATTTAATATAATGTT-ACATA
80038859 ATAATA
1 A-AATA
80038865 CATAAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 2 0.07
23 11 0.41
24 10 0.37
25 4 0.15
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (24 bp):
AAATATTTAATATAATGTTACATA
Found at i:80038885 original size:65 final size:67
Alignment explanation
Indices: 80038738--80038886 Score: 153
Period size: 64 Copynumber: 2.3 Consensus size: 67
80038728 TTAAGTAGTT
* * *
80038738 AATATAAATTATATATAAAATTAATAATACATAAGATATTTTAAAAACTTAAATATAATAATAAA
1 AATATAAATTA-ATTTAAAATTAATAATACATAAAATATTTTAAAAACTTAAACATAATAATAAA
*
80038803 TTA
65 TAA
* * * ** * *
80038806 TATTTAAA-TAATTTAATA-TAATGTTACATAAAATA-TTTAAATAA-TTTAACATAATAATACA
1 AATATAAATTAATTTAAAATTAATAATACATAAAATATTTTAAA-AACTTAAACATAATAATAAA
80038867 TAA
65 TAA
80038870 AATATAAATTAATTTAA
1 AATATAAATTAATTTAA
80038887 CTTTTATATA
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
64 28 0.42
65 24 0.36
66 6 0.09
67 2 0.03
68 6 0.09
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.39
Consensus pattern (67 bp):
AATATAAATTAATTTAAAATTAATAATACATAAAATATTTTAAAAACTTAAACATAATAATAAAT
AA
Found at i:80042173 original size:40 final size:40
Alignment explanation
Indices: 80042088--80042238 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
80042078 AATTGAATGA
* * * **
80042088 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
80042128 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
80042169 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
80042208 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
80042239 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:80042252 original size:40 final size:40
Alignment explanation
Indices: 80042125--80042254 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
80042115 ATGCTGGAAA
* * *
80042125 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
80042165 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
80042205 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
80042245 TTATATCCGG
1 TTATATCCGG
80042255 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:80050173 original size:40 final size:40
Alignment explanation
Indices: 80050107--80050257 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
80050097 AAATTGAATG
* * *
80050107 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80050146 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
80050186 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
80050226 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
80050258 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80050271 original size:40 final size:40
Alignment explanation
Indices: 80050144--80050273 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
80050134 ATGCTGGAAA
* * *
80050144 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
80050184 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
80050224 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
80050264 TTATATCCGG
1 TTATATCCGG
80050274 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:80055190 original size:19 final size:19
Alignment explanation
Indices: 80055140--80055190 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
80055130 TAAAAATAAA
*
80055140 ATACATGTGTATTGAATATT
1 ATACATGTAT-TTGAATATT
**
80055160 ATACATACATTTGTAATA-T
1 ATACATGTATTTG-AATATT
80055179 ATACATGTATTT
1 ATACATGTATTT
80055191 ACTTATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (19 bp):
ATACATGTATTTGAATATT
Found at i:80055231 original size:5 final size:5
Alignment explanation
Indices: 80055223--80055254 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
80055213 ATTATTAAGT
80055223 TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TA
80055255 GCATAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:80055260 original size:15 final size:15
Alignment explanation
Indices: 80055227--80055269 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
80055217 TTAAGTTAAT
*
80055227 ATAATATAATATAAT
1 ATAATATAATATAAC
*
80055242 ATAATATAATATAGC
1 ATAATATAATATAAC
*
80055257 ATAA-ATTATATAA
1 ATAATATAATATAA
80055270 TAGAAATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (15 bp):
ATAATATAATATAAC
Found at i:80059232 original size:21 final size:22
Alignment explanation
Indices: 80059206--80059246 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80059196 AAAAGTCGTG
80059206 TCTTT-AGTTTAAAATGAAATT
1 TCTTTAAGTTTAAAATGAAATT
* *
80059227 TCTTTAAGTTTGAAGTGAAA
1 TCTTTAAGTTTAAAATGAAA
80059247 ACATTCAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (22 bp):
TCTTTAAGTTTAAAATGAAATT
Found at i:80061132 original size:43 final size:42
Alignment explanation
Indices: 80061085--80061241 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 42
80061075 AACATATACA
80061085 ATGCCAACGTCCCAGACATGGTCTTACATGTAATAAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATAAAA-ATCG
* * * * *
80061128 ATGCC-ACTGTCCCAGATAGGGTCTTACATGAAATCAGATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAAT-AAAAATCG
* * * *
80061170 TTGCCGATGTCCCAGACATGGTCTTACACGTAA-AATAGAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATAA-A-AA-TCG
* * *
80061214 ATGCCAACATCTCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
80061242 CGAAATCCTA
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 29 0.33
43 32 0.36
44 25 0.28
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATAAAAATCG
Found at i:80066848 original size:58 final size:58
Alignment explanation
Indices: 80066731--80066853 Score: 149
Period size: 58 Copynumber: 2.1 Consensus size: 58
80066721 AATCACCAAC
* * * * * *
80066731 TATACTTGAAAAAATTTTGAAAGATAACCAACTGGGGATATGAATCTATGAGTTTTTT
1 TATACTTGAAAAAATTCTGAAAGATAACCAACTAGGGATATGAATCCACGAGCTGTTT
* * *
80066789 TATACTT-AAGAAAATTCTGAGAGATAACCAACTAGGGATGTGAATCCGCGAGCTGTTT
1 TATACTTGAA-AAAATTCTGAAAGATAACCAACTAGGGATATGAATCCACGAGCTGTTT
80066847 TATACTT
1 TATACTT
80066854 CCTTAAAATT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 2 0.04
58 53 0.96
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (58 bp):
TATACTTGAAAAAATTCTGAAAGATAACCAACTAGGGATATGAATCCACGAGCTGTTT
Found at i:80067029 original size:71 final size:70
Alignment explanation
Indices: 80066893--80067371 Score: 337
Period size: 70 Copynumber: 6.8 Consensus size: 70
80066883 GGAGTTTTTA
* * * * * *
80066893 ACTTTCGCTAACTATGTTGGAGGC-AGTAG-TTTTTATCCTATGAGCCTTAATATGACAACTTGG
1 ACTTTCGCTAACTGTGTTGGAGGCTA-TGGTTTTTTATTCTACGAGCCTTAGTATGACAACTGGG
80066956 AGCTTT
65 AGCTTT
* * ** * * *
80066962 ACTTTCACTAACTATGTTAAAGGCTATGGTTTTTTTATTCTATGAGTCTTAGTATGACAGCTGGG
1 ACTTTCGCTAACTGTGTTGGAGGCTATGG-TTTTTTATTCTACGAGCCTTAGTATGACAACTGGG
80067027 AGCTTT
65 AGCTTT
* * * *
80067033 ACTTTCGCTAACTGTGTTGGAGGCT-TCGATTTTTTA-TCTTACGATCCTTAGTATGATAGCTGG
1 ACTTTCGCTAACTGTGTTGGAGGCTAT-GGTTTTTTATTC-TACGAGCCTTAGTATGACAACTGG
*
80067096 GAGTTTT
64 GAGCTTT
* * * * * * * *
80067103 GCTCTT-GCTAACTGTATTTGAGGCTGTGGTTTTTTATACTGCGAGCCTTAGAATGACAATTGGG
1 ACT-TTCGCTAACTGTGTTGGAGGCTATGGTTTTTTATTCTACGAGCCTTAGTATGACAACTGGG
80067167 AGCTTT
65 AGCTTT
* * * * *
80067173 TCTTTCGCTAACTATGTTGGAGGTTACGAG-TTTTTA-TCTTACGAGCCTTAGTATGACAATTGG
1 ACTTTCGCTAACTGTGTTGGAGGCTATG-GTTTTTTATTC-TACGAGCCTTAGTATGACAACTGG
80067236 GAGCTTT
64 GAGCTTT
* * * * * * * * * * *
80067243 -GTTCTCACCAATTGTGTTGAAGGCTATAGTTTTTTTATCCTACGAGCCTTAATATGATAATTAG
1 ACTT-TCGCTAACTGTGTTGGAGGCTAT-GGTTTTTTATTCTACGAGCCTTAGTATGACAACTGG
80067307 GAGCTTT
64 GAGCTTT
* * * ** * * ** *
80067314 GCTCTCACTAACCATGATAGAGGCTGCGATTTTTTA-TCTTACGAGCCTTAGTATGACA
1 ACTTTCGCTAACTGTGTTGGAGGCTATGGTTTTTTATTC-TACGAGCCTTAGTATGACA
80067372 TAAATGTTGT
Statistics
Matches: 324, Mismatches: 69, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
69 31 0.10
70 180 0.56
71 111 0.34
72 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (70 bp):
ACTTTCGCTAACTGTGTTGGAGGCTATGGTTTTTTATTCTACGAGCCTTAGTATGACAACTGGGA
GCTTT
Found at i:80067153 original size:140 final size:140
Alignment explanation
Indices: 80066893--80067371 Score: 480
Period size: 141 Copynumber: 3.4 Consensus size: 140
80066883 GGAGTTTTTA
* * * * * *
80066893 ACTTTCGCTAACTATGTTGGAGGC--AGTAGTTTTTATCCTATGAGCCTTAATATGACAACTTGG
1 ACTTTCGCTAACTATGTTGGAGGCTTCG-ATTTTTTATCTTACGAGCCTTAGTATGACAACTGGG
* * * * * * * *
80066956 AGCTTTACTTTCACTAACTATGTTAAAGGCTATGGTTTTTTTATTCTATGAGTCTTAGTATGACA
65 AGCTTTGCTCTCACCAACTGTGTTGAAGGCTATGG-TTTTTTATACTACGAGCCTTAGTATGACA
**
80067021 GCTGGGAGCTTT
129 ATTGGGAGCTTT
* * * *
80067033 ACTTTCGCTAACTGTGTTGGAGGCTTCGATTTTTTATCTTACGATCCTTAGTATGATAGCTGGGA
1 ACTTTCGCTAACTATGTTGGAGGCTTCGATTTTTTATCTTACGAGCCTTAGTATGACAACTGGGA
* ** * * * * *
80067098 GTTTTGCTCTTGCTAACTGTATTTG-AGGCTGTGGTTTTTTATACTGCGAGCCTTAGAATGACAA
66 GCTTTGCTCTCACCAACTGT-GTTGAAGGCTATGGTTTTTTATACTACGAGCCTTAGTATGACAA
80067162 TTGGGAGCTTT
130 TTGGGAGCTTT
* * *
80067173 TCTTTCGCTAACTATGTTGGAGG-TTACGAGTTTTTATCTTACGAGCCTTAGTATGACAATTGGG
1 ACTTTCGCTAACTATGTTGGAGGCTT-CGATTTTTTATCTTACGAGCCTTAGTATGACAACTGGG
* * * * * *
80067237 AGCTTTGTTCTCACCAATTGTGTTGAAGGCTATAGTTTTTTTATCCTACGAGCCTTAATATGATA
65 AGCTTTGCTCTCACCAACTGTGTTGAAGGCTAT-GGTTTTTTATACTACGAGCCTTAGTATGACA
*
80067302 ATTAGGAGCTTT
129 ATTGGGAGCTTT
* * * * * * *
80067314 GCTCTCACTAACCATGATAGAGGCTGCGATTTTTTATCTTACGAGCCTTAGTATGACA
1 ACTTTCGCTAACTATGTTGGAGGCTTCGATTTTTTATCTTACGAGCCTTAGTATGACA
80067372 TAAATGTTGT
Statistics
Matches: 276, Mismatches: 56, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
139 5 0.02
140 132 0.48
141 135 0.49
142 4 0.01
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (140 bp):
ACTTTCGCTAACTATGTTGGAGGCTTCGATTTTTTATCTTACGAGCCTTAGTATGACAACTGGGA
GCTTTGCTCTCACCAACTGTGTTGAAGGCTATGGTTTTTTATACTACGAGCCTTAGTATGACAAT
TGGGAGCTTT
Found at i:80067356 original size:141 final size:140
Alignment explanation
Indices: 80066893--80067371 Score: 475
Period size: 140 Copynumber: 3.4 Consensus size: 140
80066883 GGAGTTTTTA
* * * *
80066893 ACTTTCGCTAACTATGTTGGAGGC-A-GTAGTTTTTATCCTATGAGCCTTAATATGACAACTT-G
1 ACTTTCGCTAACTATGTTGGAGGCTACG-ATTTTTTATCTTACGAGCCTTAGTATGACAA-TTGG
* * * * * * *
80066955 GAGCTTTACTT-TCACTAACTATGTTAAAGGCTATGGTTTTTTTATTCTATGAGTCTTAGTATGA
64 GAGCTTT-GTTCTCACTAACTGTGTTGAAGGCTAT-GTTTTTTTATACTACGAGCCTTAATATGA
**
80067019 CAGCTGGGAGCTTT
127 CAATTGGGAGCTTT
* * * * **
80067033 ACTTTCGCTAACTGTGTTGGAGGCTTCGATTTTTTATCTTACGATCCTTAGTATGATAGCTGGGA
1 ACTTTCGCTAACTATGTTGGAGGCTACGATTTTTTATCTTACGAGCCTTAGTATGACAATTGGGA
* * ** * * * *
80067098 GTTTTGCTCTTGCTAACTGTATTTG-AGGCTGTGGTTTTTTATACTGCGAGCCTTAGA-ATGACA
66 GCTTTGTTCTCACTAACTGT-GTTGAAGGCTATGTTTTTTTATACTACGAGCCTTA-ATATGACA
80067161 ATTGGGAGCTTT
129 ATTGGGAGCTTT
* * *
80067173 TCTTTCGCTAACTATGTTGGAGGTTACGAGTTTTTATCTTACGAGCCTTAGTATGACAATTGGGA
1 ACTTTCGCTAACTATGTTGGAGGCTACGATTTTTTATCTTACGAGCCTTAGTATGACAATTGGGA
* * * *
80067238 GCTTTGTTCTCACCAATTGTGTTGAAGGCTATAGTTTTTTTATCCTACGAGCCTTAATATGATAA
66 GCTTTGTTCTCACTAACTGTGTTGAAGGCTAT-GTTTTTTTATACTACGAGCCTTAATATGACAA
*
80067303 TTAGGAGCTTT
130 TTGGGAGCTTT
* * * * * * *
80067314 GCTCTCACTAACCATGATAGAGGCTGCGATTTTTTATCTTACGAGCCTTAGTATGACA
1 ACTTTCGCTAACTATGTTGGAGGCTACGATTTTTTATCTTACGAGCCTTAGTATGACA
80067372 TAAATGTTGT
Statistics
Matches: 272, Mismatches: 58, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
139 3 0.01
140 136 0.50
141 130 0.48
142 3 0.01
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (140 bp):
ACTTTCGCTAACTATGTTGGAGGCTACGATTTTTTATCTTACGAGCCTTAGTATGACAATTGGGA
GCTTTGTTCTCACTAACTGTGTTGAAGGCTATGTTTTTTTATACTACGAGCCTTAATATGACAAT
TGGGAGCTTT
Found at i:80067754 original size:24 final size:24
Alignment explanation
Indices: 80067722--80067770 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
80067712 GGACAAGACT
80067722 TAGCCTGTTGACCACCTAATTAGC
1 TAGCCTGTTGACCACCTAATTAGC
* *
80067746 TAGCCTGTTGGCCTCCTAATTAGC
1 TAGCCTGTTGACCACCTAATTAGC
80067770 T
1 T
80067771 TCCTCATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (24 bp):
TAGCCTGTTGACCACCTAATTAGC
Found at i:80070553 original size:26 final size:24
Alignment explanation
Indices: 80070523--80070591 Score: 66
Period size: 26 Copynumber: 2.7 Consensus size: 24
80070513 AACCATTTTC
80070523 AGAAAAAAAAAAGAGCAAAAGCAAAA
1 AGAAAAAAAAAAGA--AAAAGCAAAA
* *
80070549 AGAAAGAAAACAAAGAAAGAGGAAAA
1 AGAAA-AAAA-AAAGAAAAAGCAAAA
*
80070575 AAAAAATAAAAAAGAAA
1 AGAAAA-AAAAAAGAAA
80070592 CGTTCAGCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
25 8 0.22
26 20 0.54
27 4 0.11
28 5 0.14
ACGTcount: A:0.78, C:0.04, G:0.16, T:0.01
Consensus pattern (24 bp):
AGAAAAAAAAAAGAAAAAGCAAAA
Found at i:80073570 original size:40 final size:41
Alignment explanation
Indices: 80073515--80073782 Score: 122
Period size: 41 Copynumber: 6.5 Consensus size: 41
80073505 GCAAAAATTG
* *
80073515 TAAAACACAGAGCAATAGCGGCGTTTTA-CCAAAAACGCCGC
1 TAAAA-ACAAAGCAATAGCGGCGTTTTAGCAAAAAACGCCGC
** *
80073556 TAAAAACAAAGCAATAGTAGCGTTTTAGTAAAAAACGCCGC
1 TAAAAACAAAGCAATAGCGGCGTTTTAGCAAAAAACGCCGC
* * * * *
80073597 TAAAGACAAGAGCACTAGCGGTGCTTTT-G-ATAAAACACCGC
1 TAAAAACAA-AGCAATAGCGGCG-TTTTAGCAAAAAACGCCGC
** * * ** *
80073638 TAAAGATTAGAGCATTAGCGGCGCTTTT-G-GTAAAATGCCGC
1 TAAA-AACAAAGCAATAGCGGCG-TTTTAGCAAAAAACGCCGC
* * * **
80073679 TAAAGACCAGAGCATTAGCGGCGCTTTT-G-GTAAAACGCCGC
1 TAAA-AACAAAGCAATAGCGGCG-TTTTAGCAAAAAACGCCGC
* * * **
80073720 TAAAGACCAGAGCATTAGCGGCGCTTTT-G-GTAAAACGCCGC
1 TAAA-AACAAAGCAATAGCGGCG-TTTTAGCAAAAAACGCCGC
* *
80073761 TAAAGACCAAAGCATTAGCGGC
1 TAAA-AACAAAGCAATAGCGGC
80073783 TCTTTTGGTA
Statistics
Matches: 198, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
40 19 0.10
41 164 0.83
42 11 0.06
43 4 0.02
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (41 bp):
TAAAAACAAAGCAATAGCGGCGTTTTAGCAAAAAACGCCGC
Found at i:80073632 original size:41 final size:41
Alignment explanation
Indices: 80073546--80073805 Score: 337
Period size: 41 Copynumber: 6.3 Consensus size: 41
80073536 CGTTTTACCA
* * ** *
80073546 AAAACGCCGCTAAAAACAA-AGCAATAGTAGCG-TTTTAGT
1 AAAACGCCGCTAAAGACAAGAGCATTAGCGGCGCTTTTGGT
* * *
80073585 AAAAAACGCCGCTAAAGACAAGAGCACTAGCGGTGCTTTTGAT
1 --AAAACGCCGCTAAAGACAAGAGCATTAGCGGCGCTTTTGGT
* **
80073628 AAAACACCGCTAAAGATTAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACAAGAGCATTAGCGGCGCTTTTGGT
* *
80073669 AAAATGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACAAGAGCATTAGCGGCGCTTTTGGT
*
80073710 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACAAGAGCATTAGCGGCGCTTTTGGT
*
80073751 AAAACGCCGCTAAAGACCAA-AGCATTAGCGGCTCTTTTGGT
1 AAAACGCCGCTAAAGA-CAAGAGCATTAGCGGCGCTTTTGGT
80073792 AAAACGCCGCTAAA
1 AAAACGCCGCTAAA
80073806 AGTCATATAA
Statistics
Matches: 196, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
41 180 0.92
42 11 0.06
43 5 0.03
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAGACAAGAGCATTAGCGGCGCTTTTGGT
Found at i:80073986 original size:14 final size:14
Alignment explanation
Indices: 80073964--80074058 Score: 63
Period size: 14 Copynumber: 6.9 Consensus size: 14
80073954 TTAATTATCA
* *
80073964 TTATAGTTTAAGGT
1 TTATGGTTTAAGAT
80073978 TTATGGTTTAAGAT
1 TTATGGTTTAAGAT
* *
80073992 ATATGGGTTTAAGCT
1 TTAT-GGTTTAAGAT
80074007 TTATGAG-TT-A-A-
1 TTATG-GTTTAAGAT
*
80074018 CTATGGTTTAAGAT
1 TTATGGTTTAAGAT
* * *
80074032 ATATGGTTTAGGGT
1 TTATGGTTTAAGAT
*
80074046 TTAAGGTTTAAGA
1 TTATGGTTTAAGA
80074059 GTTAACTAGT
Statistics
Matches: 61, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
10 1 0.02
11 6 0.10
12 1 0.02
13 2 0.03
14 38 0.62
15 13 0.21
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.44
Consensus pattern (14 bp):
TTATGGTTTAAGAT
Found at i:80074254 original size:2 final size:2
Alignment explanation
Indices: 80074247--80074279 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
80074237 TTGTCCCTTG
80074247 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80074280 TTAGGGTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80075658 original size:7 final size:7
Alignment explanation
Indices: 80075642--80075715 Score: 73
Period size: 7 Copynumber: 10.9 Consensus size: 7
80075632 TGGGGATATA
*
80075642 GTTTATG
1 GTTTAGG
80075649 GTTTAGG
1 GTTTAGG
*
80075656 GTTTATG
1 GTTTAGG
*
80075663 GTTTAAG
1 GTTTAGG
*
80075670 G-AT-GG
1 GTTTAGG
80075675 GTTTAGG
1 GTTTAGG
*
80075682 GCTTAGG
1 GTTTAGG
80075689 G-TTAGG
1 GTTTAGG
80075695 GTTTAGG
1 GTTTAGG
80075702 GTTTTAGG
1 G-TTTAGG
80075710 GTTTAG
1 GTTTAG
80075716 AGTATAATTT
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
5 2 0.04
6 8 0.14
7 39 0.70
8 7 0.12
ACGTcount: A:0.16, C:0.01, G:0.39, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:80076620 original size:45 final size:44
Alignment explanation
Indices: 80076563--80076664 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
80076553 TTCCCTTTCC
*
80076563 TCCCCTA-ATTCCCCAAACTCGAAATCCCTAACATTTTCCCCAAA
1 TCCCCTATTTTCCCCAAACTC-AAATCCCTAACATTTTCCCCAAA
* * **
80076607 TCCCCTATTTTCCCCATAGTCATTTCCCTAACATTTTCCCCAAA
1 TCCCCTATTTTCCCCAAACTCAAATCCCTAACATTTTCCCCAAA
**
80076651 TCCCCCCTTTTCCC
1 TCCCCTATTTTCCC
80076665 GATACTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 40 0.80
45 10 0.20
ACGTcount: A:0.24, C:0.43, G:0.02, T:0.31
Consensus pattern (44 bp):
TCCCCTATTTTCCCCAAACTCAAATCCCTAACATTTTCCCCAAA
Found at i:80079897 original size:2 final size:2
Alignment explanation
Indices: 80079890--80079926 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
80079880 GGTCAAATTG
80079890 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80079927 GTTATTGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:80080924 original size:241 final size:241
Alignment explanation
Indices: 80080501--80080987 Score: 893
Period size: 241 Copynumber: 2.0 Consensus size: 241
80080491 ATGAATTAAT
* * *
80080501 TTTATTACCATGTAGCTTGCTTGTCCGTTAAAATTACAACAATAGTTGACCTTCTCTCCAACTTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
80080566 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGTTGGAAACCTGACAGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAG
* *
80080631 CTGTAAGATATAATGGATCCTCTCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTCTAACAACGCCACGTATGATGAATCTTAAAAAATTC
80080696 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
80080742 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
1 TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
*
80080807 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAG
66 ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAG
*
80080872 CTGTAAGATATAATGGATCCTCCCTAGGTCTAACAATGCCACGTATGATGAATCTTAAAAAATTC
131 CTGTAAGATATAATGGATCCTCCCTAGGTCTAACAACGCCACGTATGATGAATCTTAAAAAATTC
*
80080937 AAAAAGACTTGAAAGAAGTTCTATCGAGCTCATTTACTATTGAATA
196 AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
80080983 TTTAT
1 TTTAT
80080988 ATAACCTTAA
Statistics
Matches: 237, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
241 237 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (241 bp):
TTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTT
ATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACAGGTTGCCTTATATCGAG
CTGTAAGATATAATGGATCCTCCCTAGGTCTAACAACGCCACGTATGATGAATCTTAAAAAATTC
AAAAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATA
Found at i:80081446 original size:9 final size:9
Alignment explanation
Indices: 80081423--80081550 Score: 112
Period size: 9 Copynumber: 13.6 Consensus size: 9
80081413 ATTGATCATT
*
80081423 ACTTAAATA
1 ACTTACATA
*
80081432 AATTACATA
1 ACTTACATA
80081441 ACTTACATA
1 ACTTACATA
* *
80081450 ACTCATATA
1 ACTTACATA
80081459 ACTTACATA
1 ACTTACATA
*
80081468 ATTTACATA
1 ACTTACATA
80081477 ACAAGTTACATA
1 AC---TTACATA
*
80081489 ACTCACATA
1 ACTTACATA
*
80081498 ACTTGCATA
1 ACTTACATA
*
80081507 ATTTACATA
1 ACTTACATA
*
80081516 ACTCACATA
1 ACTTACATA
*
80081525 ACGTACATAACA
1 ACTTACAT---A
80081537 ACTTACATA
1 ACTTACATA
80081546 ACTTA
1 ACTTA
80081551 ACTAATACAT
Statistics
Matches: 94, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
9 77 0.82
12 17 0.18
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:80081499 original size:39 final size:36
Alignment explanation
Indices: 80081423--80081535 Score: 138
Period size: 39 Copynumber: 3.1 Consensus size: 36
80081413 ATTGATCATT
* * *
80081423 ACTTAAATAAATTACATAACTTACATAACTCATATA
1 ACTTACATAATTTACATAACTTACATAACTCACATA
80081459 ACTTACATAATTTACATAACAAGTTACATAACTCACATA
1 ACTTACATAATTTACATAAC---TTACATAACTCACATA
* *
80081498 ACTTGCATAATTTACATAACTCACATAACGT-ACATA
1 ACTTACATAATTTACATAACTTACATAAC-TCACATA
80081534 AC
1 AC
80081536 AACTTACATA
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
36 33 0.49
37 1 0.01
39 34 0.50
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (36 bp):
ACTTACATAATTTACATAACTTACATAACTCACATA
Found at i:80081513 original size:48 final size:48
Alignment explanation
Indices: 80081434--80081526 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
80081424 CTTAAATAAA
* * * *
80081434 TTACATAACTTACATAACTCATATAACTTACATAATTTACATAACAAG
1 TTACATAACTCACATAACTCACATAACTTACATAACTCACATAACAAG
** *
80081482 TTACATAACTCACATAACTTGCATAATTTACATAACTCACATAAC
1 TTACATAACTCACATAACTCACATAACTTACATAACTCACATAAC
80081527 GTACATAACA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (48 bp):
TTACATAACTCACATAACTCACATAACTTACATAACTCACATAACAAG
Found at i:80081524 original size:57 final size:57
Alignment explanation
Indices: 80081436--80081548 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 57
80081426 TAAATAAATT
* * ** *
80081436 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAAGTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* * *
80081493 ACATAACTTGCATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
80081549 TAACTAATAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.45, C:0.22, G:0.03, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:80087450 original size:43 final size:43
Alignment explanation
Indices: 80087350--80087454 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 43
80087340 ACTGGGCAAA
* *
80087350 TTAGCGGTGTTTTTTATAAAAGCGCCACTAAAGGTTCCAATCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCACTAAAAGTTCCAATCT
* *
80087393 TTAGCGGCGGTTTTTA-AAAAGCGCCGCTAAAAG-T-CATGATCT
1 TTAGCGGCGTTTTTTATAAAAGCGCCACTAAAAGTTCCA--ATCT
* *
80087435 TTAGTGGCGTTTTTTTTAAA
1 TTAGCGGCGTTTTTTATAAA
80087455 CAAACATCGC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
40 2 0.04
41 1 0.02
42 32 0.62
43 17 0.33
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTATAAAAGCGCCACTAAAAGTTCCAATCT
Found at i:80088743 original size:234 final size:234
Alignment explanation
Indices: 80088330--80088756 Score: 737
Period size: 234 Copynumber: 1.8 Consensus size: 234
80088320 AAGTGTACCA
* *
80088330 ATCCCTCTAATTCATCCTTCTTCTGATGAAGAGTACCGGGGGTGGCTTGGGTAAGATCCCAAGGC
1 ATCCCTCTAATTCATCCTTCTTCTAATGAAGAGTACCGGGGGTGGCTTGGGTAAGATCCCAAAGC
* *
80088395 TCTTGAATTGAGTGAGAATGTAGGCTCGGGTAGCGTTTAAGGGGGTGTAAGCTTCAAATCTTCCC
66 TCTTGAATTGAATGAGAATATAGGCTCGGGTAGCGTTTAAGGGGGTGTAAGCTTCAAATCTTCCC
* *
80088460 TGAGGAGCATATCTTCTGGTGTGGTCTTACTAAAGTCTTAAGGGAGCCCTGAGTGTGTCACCTTG
131 TGAGGAACATATCTTCTGGTGTGGTCTTACTAAAGTCTTAAGAGAGCCCTGAGTGTGTCACCTTG
80088525 GGCCTGAATCTTTTGTAGCCTATCGAGTAAACTGCACCG
196 GGCCTGAATCTTTTGTAGCCTATCGAGTAAACTGCACCG
*
80088564 ATCCCTCTAATTCATCCTTCTTCTAATGAAGAGTATCGGGGGTGGCTTGGGTAAGATCCCAAAGC
1 ATCCCTCTAATTCATCCTTCTTCTAATGAAGAGTACCGGGGGTGGCTTGGGTAAGATCCCAAAGC
* * * *
80088629 TCTTGACTTGAATGAGAATATAGGTTCGGGTAGCGTTTAAGGGTGTGTAAGCTTCAAATCTTCCT
66 TCTTGAATTGAATGAGAATATAGGCTCGGGTAGCGTTTAAGGGGGTGTAAGCTTCAAATCTTCCC
* *
80088694 TGAGGAACATATCTTCTGGTGTGTTCTTACTAAAGTCTTAAGAGAGCCCTGAGTGTGTTACCT
131 TGAGGAACATATCTTCTGGTGTGGTCTTACTAAAGTCTTAAGAGAGCCCTGAGTGTGTCACCT
80088757 GACTCTTCTA
Statistics
Matches: 180, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
234 180 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (234 bp):
ATCCCTCTAATTCATCCTTCTTCTAATGAAGAGTACCGGGGGTGGCTTGGGTAAGATCCCAAAGC
TCTTGAATTGAATGAGAATATAGGCTCGGGTAGCGTTTAAGGGGGTGTAAGCTTCAAATCTTCCC
TGAGGAACATATCTTCTGGTGTGGTCTTACTAAAGTCTTAAGAGAGCCCTGAGTGTGTCACCTTG
GGCCTGAATCTTTTGTAGCCTATCGAGTAAACTGCACCG
Found at i:80090360 original size:26 final size:26
Alignment explanation
Indices: 80090299--80090361 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
80090289 ACCTTGACTT
*
80090299 GCGAGCTAGGTCATTGGCTTTGCCTC
1 GCGAGCTGGGTCATTGGCTTTGCCTC
* *
80090325 GCGAGTTGGGTCTTTGGCTTTGCCTC
1 GCGAGCTGGGTCATTGGCTTTGCCTC
80090351 GCGAGCTGGGT
1 GCGAGCTGGGT
80090362 TCATGAGCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.08, C:0.24, G:0.37, T:0.32
Consensus pattern (26 bp):
GCGAGCTGGGTCATTGGCTTTGCCTC
Found at i:80096180 original size:30 final size:30
Alignment explanation
Indices: 80096123--80096180 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
80096113 TTTTCGAGTA
* **
80096123 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
80096153 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
80096181 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:80096590 original size:47 final size:46
Alignment explanation
Indices: 80096521--80096692 Score: 197
Period size: 47 Copynumber: 3.7 Consensus size: 46
80096511 TTACTTGTGT
*
80096521 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCTAGAGAATGAGC
1 GCCAGTGTAAGACATGTCTGGGACAT-GCATCAGCTAGAGAATGAGA
* * *
80096568 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACG-ATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG-CTAGA-GAATGAGA
* * * *
80096615 GCCAGTGTAAGACGTGTCTGGGACATGCATCAGCTA-AGAGT-TGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAGAGAATGAGA
* * *
80096659 GCTAGTGTAAGACATGTCTGGTACATGTATCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
80096693 ACACATAGAC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
44 31 0.29
45 2 0.02
46 8 0.07
47 65 0.61
48 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAGAGAATGAGA
Found at i:80101181 original size:2 final size:2
Alignment explanation
Indices: 80101174--80101208 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80101164 ATGGTAAAAG
80101174 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80101209 AAGCAAATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80101499 original size:42 final size:42
Alignment explanation
Indices: 80101452--80101549 Score: 196
Period size: 42 Copynumber: 2.3 Consensus size: 42
80101442 CACGGGCAGA
80101452 CACACGGGCGTGTGTCTCAACCGTGTGTGACACACGGCCATG
1 CACACGGGCGTGTGTCTCAACCGTGTGTGACACACGGCCATG
80101494 CACACGGGCGTGTGTCTCAACCGTGTGTGACACACGGCCATG
1 CACACGGGCGTGTGTCTCAACCGTGTGTGACACACGGCCATG
80101536 CACACGGGCGTGTG
1 CACACGGGCGTGTG
80101550 GTTTGGCCAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (42 bp):
CACACGGGCGTGTGTCTCAACCGTGTGTGACACACGGCCATG
Found at i:80102878 original size:30 final size:30
Alignment explanation
Indices: 80102842--80102898 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
80102832 TTTGATTTTC
* *
80102842 AAGTCTAGGGGTAAAATGGTCATTTTGTGA
1 AAGTCTAAGGGTAAAATAGTCATTTTGTGA
80102872 AAGTCTAAGGGTAAAATAGTCATTTTG
1 AAGTCTAAGGGTAAAATAGTCATTTTG
80102899 CCCAATAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.33
Consensus pattern (30 bp):
AAGTCTAAGGGTAAAATAGTCATTTTGTGA
Found at i:80103334 original size:48 final size:46
Alignment explanation
Indices: 80103236--80103506 Score: 191
Period size: 48 Copynumber: 5.8 Consensus size: 46
80103226 TTTGTGTACC
* *
80103236 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTA-TGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTAGAGAGAGCT
*
80103282 AGTGTAAGACCATGTCTGGGACATGGAATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-AGA-GAGAGCT
* * * * * *
80103330 AGTGTAAGA-CATGTTTGGGATA-AGTATCGG--TTACA-AGATGTGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAGAGAGA-G-CT
* * *
80103373 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTATAGAG-GTGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--T-TAGAGAGAGCT
* * * * *
80103422 AGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGATATGTGAGAGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-GCA-TTA-GAGAGAGCT
80103472 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
80103507 CCTACCATAT
Statistics
Matches: 176, Mismatches: 29, Indels: 39
0.72 0.12 0.16
Matches are distributed among these distances:
41 3 0.02
42 1 0.01
43 3 0.02
44 11 0.06
45 15 0.09
46 21 0.12
47 25 0.14
48 54 0.31
49 4 0.02
50 35 0.20
51 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAGAGAGAGCT
Found at i:80105182 original size:42 final size:42
Alignment explanation
Indices: 80105135--80105241 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
80105125 TATTGTTCTC
80105135 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
80105177 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
* *
80105219 GGCACTACGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
80105242 ATTGTACAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:80105306 original size:27 final size:28
Alignment explanation
Indices: 80105249--80105318 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
80105239 AAAATTGTAC
**
80105249 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
80105277 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
80105304 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
80105319 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Done.