Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 277 of 427
Found at i:80108555 original size:31 final size:31
Alignment explanation
Indices: 80108519--80108581 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
80108509 AAGAGTTTGT
* *
80108519 TTCTTCATTTGGACTGCTCTAAAATAAAGAC
1 TTCTTCATTTGAACTACTCTAAAATAAAGAC
80108550 TTCTTCATTTGAACTACTCTAAAATAAAGAC
1 TTCTTCATTTGAACTACTCTAAAATAAAGAC
80108581 T
1 T
80108582 CATTACAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (31 bp):
TTCTTCATTTGAACTACTCTAAAATAAAGAC
Found at i:80111312 original size:39 final size:39
Alignment explanation
Indices: 80111268--80111396 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 39
80111258 CGGAATATAA
80111268 CCGGATATAACATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACATGTGCACAAATGCCTTCGGGTCTTAGC
* *
80111307 CCGGATA-GA-ATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACATG--T-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
80111347 CCGGATGTAGCCACT-AGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACA-TGTGCACAAATGCCTTCGGGTCTTAGC
80111387 CCGGATATAA
1 CCGGATATAA
80111397 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
37 3 0.04
38 1 0.01
39 8 0.11
40 58 0.81
43 1 0.01
44 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:80111411 original size:40 final size:40
Alignment explanation
Indices: 80111283--80111433 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
80111273 TATAACATGT
* * *
80111283 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
* ** *
80111323 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
80111363 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* *
80111403 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
80111434 CATTCAATTT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 15 0.16
40 75 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:80118351 original size:40 final size:40
Alignment explanation
Indices: 80118243--80118452 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80118233 CGGGATTTAA
* * * * *
80118243 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80118283 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80118323 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80118363 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80118403 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80118443 CCGGATATAT
1 CCGGATATAT
80118453 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80124859 original size:40 final size:40
Alignment explanation
Indices: 80124814--80124980 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
80124804 CGGAATATAA
*
80124814 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
80124854 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80124894 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
80124934 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
80124973 CCGGATAT
1 CCGGATAT
80124981 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80131894 original size:40 final size:40
Alignment explanation
Indices: 80131786--80131995 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
80131776 CGGGATTTAA
* * * * *
80131786 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
80131826 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80131866 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80131906 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80131946 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
80131986 CCGGATATAT
1 CCGGATATAT
80131996 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:80136167 original size:40 final size:40
Alignment explanation
Indices: 80136122--80136289 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
80136112 CGGAATATAA
*
80136122 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
80136162 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
80136202 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
80136242 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
80136282 CCGGATAT
1 CCGGATAT
80136290 CATTCAATTT
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 100 0.95
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80136272 original size:80 final size:80
Alignment explanation
Indices: 80136138--80136287 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
80136128 ATAAGCATGT
* *
80136138 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
80136203 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
80136218 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
80136281 CCCGGAT
64 CCCGGAT
80136288 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:80144493 original size:25 final size:25
Alignment explanation
Indices: 80144464--80144514 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
80144454 AAGAATAATT
*
80144464 TGAATATTTGATATTGCCTAATAAA
1 TGAATATCTGATATTGCCTAATAAA
* *
80144489 TGAATATCTGATATTGCTTAGTAAA
1 TGAATATCTGATATTGCCTAATAAA
80144514 T
1 T
80144515 CTCAAGCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (25 bp):
TGAATATCTGATATTGCCTAATAAA
Found at i:80148532 original size:31 final size:31
Alignment explanation
Indices: 80148497--80148587 Score: 112
Period size: 31 Copynumber: 2.9 Consensus size: 31
80148487 AAAAAAACTT
*
80148497 AACAACTTAGTGACTTAAATAAAAACTTTTG
1 AACAACTTAGTGACATAAATAAAAACTTTTG
* * *
80148528 AACAATTTAGTGACATAAACAAAAATTTTTG
1 AACAACTTAGTGACATAAATAAAAACTTTTG
* *
80148559 AAC-AGTTCAGTGACATAAATGAAAACTTT
1 AACAACTT-AGTGACATAAATAAAAACTTT
80148588 CAAATAATTC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 3 0.06
31 48 0.94
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (31 bp):
AACAACTTAGTGACATAAATAAAAACTTTTG
Found at i:80152317 original size:42 final size:43
Alignment explanation
Indices: 80152236--80152319 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 43
80152226 CACATGTATC
* * *
80152236 GCATCCATTATGAACTCGGACCACTCAACGAGCCCGGATGCTT
1 GCATCCATAATGAACTCAGACCACTCAACAAGCCCGGATGCTT
* **
80152279 GCATCCA-AATGAACTCAGACCATTCAACAAGCTTGGATGCT
1 GCATCCATAATGAACTCAGACCACTCAACAAGCCCGGATGCT
80152320 ACATATATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
42 28 0.80
43 7 0.20
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (43 bp):
GCATCCATAATGAACTCAGACCACTCAACAAGCCCGGATGCTT
Found at i:80155938 original size:46 final size:47
Alignment explanation
Indices: 80155674--80155930 Score: 371
Period size: 46 Copynumber: 5.6 Consensus size: 47
80155664 CGACAAGATA
* * *
80155674 CCATAGTGTCTTTCAACTATGGTCTTACTCATTT-TCTGTCATGTTG
1 CCATAGTATCTTTCAACCATGGTCTTATTCATTTCTCTGTCATGTTG
*
80155720 CCATAGTATCTTTCAACCATGGTCTTATTCATTTCT-TGTCACGTTG
1 CCATAGTATCTTTCAACCATGGTCTTATTCATTTCTCTGTCATGTTG
* *
80155766 CAATAGTATCTTTCAACCATGGTCTTATTCATTTC-CTTTCATGTTG
1 CCATAGTATCTTTCAACCATGGTCTTATTCATTTCTCTGTCATGTTG
*
80155812 CCATGGTATCTTTCAACCATGGTCTTATTCATTTCT-TGTCATGTTG
1 CCATAGTATCTTTCAACCATGGTCTTATTCATTTCTCTGTCATGTTG
* * *
80155858 CCATGGTATCTTTCAAGCATGGTCTTATTCATTTCTCT-TCATATTG
1 CCATAGTATCTTTCAACCATGGTCTTATTCATTTCTCTGTCATGTTG
* *
80155904 ACATAGTATCTTTCAACTATGGTCTTA
1 CCATAGTATCTTTCAACCATGGTCTTA
80155931 CACATTTCAA
Statistics
Matches: 191, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
46 189 0.99
47 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (47 bp):
CCATAGTATCTTTCAACCATGGTCTTATTCATTTCTCTGTCATGTTG
Found at i:80155970 original size:45 final size:45
Alignment explanation
Indices: 80155913--80156028 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 45
80155903 GACATAGTAT
* *
80155913 CTTTCAACTATGGTCTTACACATTTCAATCGCGATGCCATAGCGC
1 CTTTCAGCTATGGTCTTACTCATTTCAATCGCGATGCCATAGCGC
* ** * * * *
80155958 CTTTCAGTTATGGTCTTACTTGTCTGAATCGTGATGCCATAGCGT
1 CTTTCAGCTATGGTCTTACTCATTTCAATCGCGATGCCATAGCGC
80156003 CTTTCAGCTATGGTCTTACTCATTTC
1 CTTTCAGCTATGGTCTTACTCATTTC
80156029 TGGTATGATG
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (45 bp):
CTTTCAGCTATGGTCTTACTCATTTCAATCGCGATGCCATAGCGC
Found at i:80156089 original size:33 final size:33
Alignment explanation
Indices: 80156040--80156192 Score: 116
Period size: 33 Copynumber: 4.6 Consensus size: 33
80156030 GGTATGATGT
*
80156040 CATAGTCCAGCTATGGTCTTACACGTGTATTGC
1 CATAGCCCAGCTATGGTCTTACACGTGTATTGC
* * ** *
80156073 CATGGCCCAGCCATGGTCTTACAC-TCGTGGTGT
1 CATAGCCCAGCTATGGTCTTACACGT-GTATTGC
* *
80156106 CATATCCCAGATATGGTCTTATCATCAG-G-A-TGC
1 CATAGCCCAGCTATGGTCTTA-CA-C-GTGTATTGC
* * * *
80156139 CATAGCCTAGCTATGGTCTTAAACATATATTGC
1 CATAGCCCAGCTATGGTCTTACACGTGTATTGC
* *
80156172 CATGGCCCAGCCATGGTCTTA
1 CATAGCCCAGCTATGGTCTTA
80156193 TCCGTCAATT
Statistics
Matches: 91, Mismatches: 21, Indels: 16
0.71 0.16 0.12
Matches are distributed among these distances:
31 1 0.01
32 3 0.03
33 83 0.91
34 2 0.02
35 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (33 bp):
CATAGCCCAGCTATGGTCTTACACGTGTATTGC
Found at i:80157769 original size:8 final size:8
Alignment explanation
Indices: 80157756--80157780 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
80157746 ATATATTTTG
80157756 AATAAAAT
1 AATAAAAT
80157764 AATAAAAT
1 AATAAAAT
80157772 AATAAAAT
1 AATAAAAT
80157780 A
1 A
80157781 TCATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:80159215 original size:23 final size:23
Alignment explanation
Indices: 80159185--80159230 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
80159175 TATAATTCCT
*
80159185 TTGTGAACAAACTCTGGACAAAA
1 TTGTGAACAAACTCTGAACAAAA
80159208 TTGTGAACAAACTCTGAACAAAA
1 TTGTGAACAAACTCTGAACAAAA
80159231 GAAGTTGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (23 bp):
TTGTGAACAAACTCTGAACAAAA
Found at i:80161726 original size:2 final size:2
Alignment explanation
Indices: 80161719--80161750 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80161709 ACAAAAAGAA
80161719 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80161751 TAAGAAGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80165429 original size:13 final size:12
Alignment explanation
Indices: 80165406--80165468 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
80165396 AATAATTTTA
80165406 TATTAAAATTAT
1 TATTAAAATTAT
80165418 TATT-AAA-TAT
1 TATTAAAATTAT
80165428 TATTAATAATTA-
1 TATTAA-AATTAT
*
80165440 TATTAAGAA-TGT
1 TATTAA-AATTAT
80165452 TATT-AAATTAT
1 TATTAAAATTAT
80165463 ATATTA
1 -TATTA
80165469 TTTTATAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:80165433 original size:22 final size:23
Alignment explanation
Indices: 80165406--80165468 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
80165396 AATAATTTTA
80165406 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
80165428 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
80165452 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
80165469 TTTTATAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:80165461 original size:29 final size:27
Alignment explanation
Indices: 80165429--80165517 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 27
80165419 ATTAAATATT
80165429 ATTAATAATTATATTAAGAATGTTATTAA
1 ATTAATAATTATATTAA-AAT-TTATTAA
* *
80165458 ATT-ATATATTATTTTATAAATTGTATTTA
1 ATTAATA-ATTATATTA-AAATT-TATTAA
* *
80165487 A-TAATAATTATGTTAAAATATGATTAA
1 ATTAATAATTATATTAAAAT-TTATTAA
80165514 ATTA
1 ATTA
80165518 TTTATTTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
27 9 0.18
28 16 0.33
29 23 0.47
30 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (27 bp):
ATTAATAATTATATTAAAATTTATTAA
Found at i:80165475 original size:34 final size:33
Alignment explanation
Indices: 80165398--80165475 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
80165388 TTCTTAATAA
80165398 TAATTTTATATTAAAATTATTATTAAATATTAT
1 TAATTTTATATTAAAATTATTATTAAATATTAT
* *
80165431 TAATAATTATATTAAGAA-TGTTATTAAATTATATAT
1 TAAT-TTTATATTAA-AATTATTATTAAA-TAT-TAT
80165467 T-ATTTTATA
1 TAATTTTATA
80165476 AATTGTATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
33 4 0.11
34 23 0.61
35 7 0.18
36 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (33 bp):
TAATTTTATATTAAAATTATTATTAAATATTAT
Found at i:80165581 original size:25 final size:26
Alignment explanation
Indices: 80165532--80165582 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
80165522 TTTTTTATTT
*
80165532 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
80165558 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
80165583 ATCTACCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:80165724 original size:44 final size:46
Alignment explanation
Indices: 80165652--80165739 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 46
80165642 TATTACAACA
80165652 TCTATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTAT
1 TCTATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTAT
* * *** *
80165696 TCTATTTCATTTAACCAAACAGTTGAATTATTGATTACAGCTCT
1 TCTATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCT
80165740 TTTTCATTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
44 24 0.67
45 1 0.03
46 11 0.31
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (46 bp):
TCTATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTAT
Found at i:80165783 original size:16 final size:17
Alignment explanation
Indices: 80165744--80165784 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
80165734 AGCTCTTTTT
80165744 CATTAC-ATCTCTATTC
1 CATTACAATCTCTATTC
*
80165760 AATTACAATC-CTATTC
1 CATTACAATCTCTATTC
80165776 CATTACAAT
1 CATTACAAT
80165785 GAACCAAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.34, C:0.27, G:0.00, T:0.39
Consensus pattern (17 bp):
CATTACAATCTCTATTC
Found at i:80167787 original size:2 final size:2
Alignment explanation
Indices: 80167780--80167812 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
80167770 TCATAAATTG
*
80167780 TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80167813 GTACACACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:80168335 original size:29 final size:30
Alignment explanation
Indices: 80168297--80168365 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 30
80168287 TTTATAATTT
*
80168297 AAATTAATAAAAAAATATA-AAA-ATTGTAAA
1 AAATT-ATAAAAAAATATAGAAATATAG-AAA
*
80168327 AAATTAT-AAAATATATAGAAATATAGAAA
1 AAATTATAAAAAAATATAGAAATATAGAAA
80168356 AAATTATAAA
1 AAATTATAAA
80168366 GTTTTATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 9 0.26
29 15 0.44
30 10 0.29
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (30 bp):
AAATTATAAAAAAATATAGAAATATAGAAA
Found at i:80168363 original size:170 final size:172
Alignment explanation
Indices: 80168142--80168466 Score: 507
Period size: 170 Copynumber: 1.9 Consensus size: 172
80168132 TAAAATTTAC
*
80168142 TAAAAATTAGTAAAAAAATTATAAAATATATAGAAATATTGAAAAAATTATAAAATTTTATAAAG
1 TAAAAATTAGTAAAAAAATTATAAAATATATAGAAATATAGAAAAAATTATAAAATTTTATAAAG
* * *
80168207 TCTGTAAGAAAATTATGAAAAATA-TAAAGAAATATAAAATTAGTAAAATAA-A-ATAAAATTAA
66 T-AGTAAGAAAATTAT-AAAAAAAGTAAAGAAATATAAAATTAGTAAAA-AATATAAAAAATTAA
80168269 TAGTACCAAAAGAAACATTTTATAATTTAAATTAATAAAAAAATA
128 TAGTACCAAAAGAAACATTTTATAATTTAAATTAATAAAAAAATA
*
80168314 TAAAAATT-GT-AAAAAATTATAAAATATATAGAAATATAGAAAAAATTATAAAGTTTTATAAAG
1 TAAAAATTAGTAAAAAAATTATAAAATATATAGAAATATAGAAAAAATTATAAAATTTTATAAAG
* * * *
80168377 TAGTAAGAGAATTATAAAAAAAGTAAAGAAATATAAAATTCGTAAAAAATATAAAAAATTTATCG
66 TAGTAAGAAAATTATAAAAAAAGTAAAGAAATATAAAATTAGTAAAAAATATAAAAAATTAATAG
80168442 TACCAAAAGAAACATTTTATAATTT
131 TACCAAAAGAAACATTTTATAATTT
80168467 TTCTATAAAT
Statistics
Matches: 141, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
168 8 0.06
169 36 0.26
170 87 0.62
171 2 0.01
172 8 0.06
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (172 bp):
TAAAAATTAGTAAAAAAATTATAAAATATATAGAAATATAGAAAAAATTATAAAATTTTATAAAG
TAGTAAGAAAATTATAAAAAAAGTAAAGAAATATAAAATTAGTAAAAAATATAAAAAATTAATAG
TACCAAAAGAAACATTTTATAATTTAAATTAATAAAAAAATA
Found at i:80168686 original size:11 final size:10
Alignment explanation
Indices: 80168622--80168766 Score: 57
Period size: 10 Copynumber: 15.4 Consensus size: 10
80168612 GTTTGATACA
80168622 TTTTATAATT
1 TTTTATAATT
*
80168632 TTTT-TTATGAT
1 TTTTATAAT--T
**
80168643 TTTTATAAAA
1 TTTTATAATT
* * *
80168653 TATTACAAAT
1 TTTTATAATT
80168663 TTTTAT-ATT
1 TTTTATAATT
80168672 TTTTATAACTT
1 TTTTATAA-TT
80168683 TTTTATAA--
1 TTTTATAATT
80168691 TTTTA-AA-T
1 TTTTATAATT
80168699 TTTTA-AATAT
1 TTTTATAAT-T
*
80168709 TTTTATTAA-A
1 TTTTA-TAATT
*
80168719 TTTAATAA-T
1 TTTTATAATT
80168728 TTTTATAATT
1 TTTTATAATT
* *
80168738 TTAT-TGA--
1 TTTTATAATT
80168745 TTTT-T-ATT
1 TTTTATAATT
80168753 TTTTATAATT
1 TTTTATAATT
80168763 TTTT
1 TTTT
80168767 GCCACATGTC
Statistics
Matches: 103, Mismatches: 17, Indels: 30
0.69 0.11 0.20
Matches are distributed among these distances:
6 1 0.01
7 6 0.06
8 16 0.16
9 24 0.23
10 37 0.36
11 15 0.15
12 4 0.04
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (10 bp):
TTTTATAATT
Found at i:80168735 original size:9 final size:9
Alignment explanation
Indices: 80168660--80168765 Score: 87
Period size: 9 Copynumber: 11.8 Consensus size: 9
80168650 AAATATTACA
80168660 AATTTTTAT
1 AATTTTTAT
*
80168669 ATTTTTTAT
1 AATTTTTAT
80168678 AACTTTTTTAT
1 AA--TTTTTAT
80168689 AA-TTTTA-
1 AATTTTTAT
*
80168696 AATTTTTAA
1 AATTTTTAT
80168705 ATATTTTTATT
1 A-ATTTTTA-T
* *
80168716 AAATTTAAT
1 AATTTTTAT
80168725 AATTTTTAT
1 AATTTTTAT
80168734 AA-TTTTATT
1 AATTTTTA-T
*
80168743 GATTTTTAT
1 AATTTTTAT
80168752 --TTTTTAT
1 AATTTTTAT
80168759 AATTTTT
1 AATTTTT
80168766 TGCCACATGT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
7 9 0.11
8 15 0.19
9 28 0.35
10 17 0.22
11 10 0.13
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (9 bp):
AATTTTTAT
Found at i:80168766 original size:27 final size:27
Alignment explanation
Indices: 80168660--80168766 Score: 96
Period size: 27 Copynumber: 3.9 Consensus size: 27
80168650 AAATATTACA
80168660 AATTTTTATATTTTTTATAACTTTTTTA-T
1 AATTTTTA-A-TTTTTATAA-TTTTTTATT
*
80168689 AATTTTAAATTTTTA-AATATTTTTATT
1 AATTTTTAATTTTTATAAT-TTTTTATT
*
80168716 AAATTTAATAATTTTTATAA--TTTTATT
1 -AATTT-TTAATTTTTATAATTTTTTATT
* *
80168743 GATTTTTATTTTTTATAATTTTTT
1 AATTTTTAATTTTTATAATTTTTT
80168767 GCCACATGTC
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
25 12 0.18
26 12 0.18
27 18 0.28
28 6 0.09
29 15 0.23
30 2 0.03
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (27 bp):
AATTTTTAATTTTTATAATTTTTTATT
Found at i:80169339 original size:93 final size:92
Alignment explanation
Indices: 80168935--80169402 Score: 468
Period size: 93 Copynumber: 5.2 Consensus size: 92
80168925 AATTTCAATT
* * *
80168935 TTTTGAAAAAATTTGAGGGTCTTTTTTATGCATTTTGACAGTTCAAGTACCCAATTAAGTGCAAA
1 TTTTGAAAAAATTTGAGGGT-ATTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAA
* *
80169000 AAGAAAAAGCATGGGCTTAATTGCTTTA
65 AAAAAAAAGCAGGGGCTTAATTGCTTTA
* * * *
80169028 TTTTGAAAAAAATTGACGGTCTTTTTTATGCA-TTTGAAAGTTCAAGTACCCGATTGAGT---AA
1 TTTTGAAAAAATTTGAGGGT-ATTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAA
*
80169089 AAAAGAAAGCAGGGGCTTAATTGC-TT-
65 AAAAAAAAGCAGGGGCTTAATTGCTTTA
** * * *
80169115 TTTTG-AAAAATTTGAAAGCCT-TTTTTATACATTTT-AAAATTTAAGTACCCAATTGAGTGCAA
1 TTTTGAAAAAATTTG--AGGGTATTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAA
**
80169177 AAAAAAAAA-CAATGGCTTAATTGCTTTA
64 AAAAAAAAAGCAGGGGCTTAATTGCTTTA
* * * * *
80169205 TTTTGAAAAAAATT-AAGGCATTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTGAGTACAAA
1 TTTTGAAAAAATTTGAGGGTA-TTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGC-AA
80169269 AAAAAATAAAGCAGGGGCTTAATTGCTTT-
64 AAAAAA-AAAGCAGGGGCTTAATTGCTTTA
* * * * *
80169298 TCTTT-AAAAATTTTGAGGGTATTTTTATGCATTTTAAAAGTTTAAGTATCCAATTGAGTGGAAA
1 T-TTTGAAAAAATTTGAGGGTATTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAA
* *
80169362 AAAAACAA--A--GGCTTAATTG-TTTT
65 AAAAAAAAGCAGGGGCTTAATTGCTTTA
*
80169385 TTTTGAAAAAAATTGAGG
1 TTTTGAAAAAATTTGAGG
80169403 ACCTTTTACA
Statistics
Matches: 314, Mismatches: 42, Indels: 44
0.79 0.10 0.11
Matches are distributed among these distances:
86 43 0.14
87 30 0.10
88 18 0.06
89 35 0.11
90 18 0.06
91 30 0.10
92 40 0.13
93 77 0.25
94 23 0.07
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (92 bp):
TTTTGAAAAAATTTGAGGGTATTTTTATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAA
AAAAAAAGCAGGGGCTTAATTGCTTTA
Found at i:80169377 original size:269 final size:267
Alignment explanation
Indices: 80168869--80169394 Score: 640
Period size: 270 Copynumber: 2.0 Consensus size: 267
80168859 CAAAGGACAT
* * * * *
80168869 TTTTTTATGCATTTTGACAGTTTAAGTACCCAATTGAGTGCAAAAGAAAAAGGCTTAATTTCAAT
1 TTTTTTATACATTTTGAAAATTTAAGTACCCAATTGAGTGCAAAAAAAAAAGGCTTAATTGCAAT
* * * *
80168934 TTTTTGAAAAAATTTGAGGGTCTTTTTTATGCATTTTGACAGTTCAAGTACCCAATTAAGTGCAA
66 TTTTTGAAAAAAATTGAAGGTCTTTTTTATGCATTTTGAAAGTTCAAGTACCCAATTAAGTACAA
* * * *
80168999 AAAGAAAAAGCATGGGCTTAATTGCTTTATTTTGAAAAAAATTGACGGTCTTTTTTATGCATTTG
131 AAAAAAAAAGCAGGGGCTTAATTGCTTTATTTTGAAAAAAATTGACGGTCATTTTTATGCATTTA
* **
80169064 AAAGTTCAAGTACCCGATTGAGTAAAAAAGAAAGCAGGGGCTTAATTG-CTTTTTTGAAAAATTT
196 AAAGTTCAAGTACCCAATTGAGTAAAAAAGAAAGCAAAGGCTTAATTGTCTTTTTTGAAAAATTT
80169128 GAAAGCC
261 GAAAGCC
80169135 TTTTTTATACATTTT-AAAATTTAAGTACCCAATTGAGTGCAAAAAAAAAAACAATGGCTTAATT
1 TTTTTTATACATTTTGAAAATTTAAGTACCCAATTGAGTGC---AAAAAAAA-AA-GGCTTAATT
* * *
80169199 GC-TTTATTTTGAAAAAAATT-AAGG-CATTTTTTATGCATTTTGAAAGTTCAAGTATCCAATTG
61 GCAATT-TTTTGAAAAAAATTGAAGGTC-TTTTTTATGCATTTTGAAAGTTCAAGTACCCAATTA
** *
80169261 AGTACAAAAAAAAATAAAGCAGGGGCTTAATTGCTTT-TCTTT-AAAAATTTTGAGGGT-ATTTT
124 AGTAC-AAAAAAAA-AAAGCAGGGGCTTAATTGCTTTAT-TTTGAAAAAAATTGACGGTCATTTT
* * * *
80169323 TATGCATTTTAAAAGTTTAAGTATCCAATTGAGTGGAAAAA-AAA-CAAAGGCTTAATTGTTTTT
186 TATGCA-TTTAAAAGTTCAAGTACCCAATTGAGT-AAAAAAGAAAGCAAAGGCTTAATTGTCTTT
80169386 TTTGAAAAA
249 TTTGAAAAA
80169395 AATTGAGGAC
Statistics
Matches: 221, Mismatches: 26, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
265 23 0.10
266 14 0.06
268 8 0.04
269 66 0.30
270 81 0.37
271 29 0.13
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (267 bp):
TTTTTTATACATTTTGAAAATTTAAGTACCCAATTGAGTGCAAAAAAAAAAGGCTTAATTGCAAT
TTTTTGAAAAAAATTGAAGGTCTTTTTTATGCATTTTGAAAGTTCAAGTACCCAATTAAGTACAA
AAAAAAAAAGCAGGGGCTTAATTGCTTTATTTTGAAAAAAATTGACGGTCATTTTTATGCATTTA
AAAGTTCAAGTACCCAATTGAGTAAAAAAGAAAGCAAAGGCTTAATTGTCTTTTTTGAAAAATTT
GAAAGCC
Found at i:80170389 original size:6 final size:6
Alignment explanation
Indices: 80170378--80170411 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
80170368 CTTTGCTATT
*
80170378 ACCATC ACCATC ACCATC TCCATC ACCATC ACCA
1 ACCATC ACCATC ACCATC ACCATC ACCATC ACCA
80170412 ATAAAATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (6 bp):
ACCATC
Found at i:80171858 original size:24 final size:24
Alignment explanation
Indices: 80171831--80171879 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
80171821 CCAATCGTTG
80171831 TTGATCCTTCCAAAACATAAACTC
1 TTGATCCTTCCAAAACATAAACTC
80171855 TTGATCCTTCCAAAACATAAACTC
1 TTGATCCTTCCAAAACATAAACTC
80171879 T
1 T
80171880 GCCAATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.31
Consensus pattern (24 bp):
TTGATCCTTCCAAAACATAAACTC
Found at i:80173611 original size:21 final size:21
Alignment explanation
Indices: 80173587--80173631 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
80173577 AAACCAACTC
*
80173587 ATATTTTTTCTA-GCCCAACAA
1 ATATTTTTCCTATGCCCAA-AA
80173608 ATA-TTTTCCTATGCCCAAAA
1 ATATTTTTCCTATGCCCAAAA
80173628 ATAT
1 ATAT
80173632 GATTTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.38
Consensus pattern (21 bp):
ATATTTTTCCTATGCCCAAAA
Found at i:80178631 original size:15 final size:17
Alignment explanation
Indices: 80178606--80178637 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
80178596 TAGGTTATTG
80178606 GATCAAAATGAA-AATT
1 GATCAAAATGAACAATT
80178622 GATC-AAATGAACAATT
1 GATCAAAATGAACAATT
80178638 AAAATGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.25
Consensus pattern (17 bp):
GATCAAAATGAACAATT
Found at i:80181154 original size:26 final size:26
Alignment explanation
Indices: 80181125--80181232 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
80181115 TGATACAAAT
*
80181125 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80181151 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80181177 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80181203 TGATAATGCGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80181229 TGAT
1 TGAT
80181233 GAGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80182738 original size:54 final size:53
Alignment explanation
Indices: 80182650--80182790 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 53
80182640 AGGAAGCGTC
* *
80182650 CTGGTGGCTATGCCACAATTATCTGATTTAGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTCTGCCACATATATCTGTT
80182703 CTTGGTGGCTATGCCACAATAATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 C-TGGTGGCTATGCCACAAT-ATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
80182758 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATATCTG-ATCTGGTG
80182791 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
53 7 0.09
54 72 0.89
55 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:80182787 original size:27 final size:27
Alignment explanation
Indices: 80182650--80182808 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
80182640 AGGAAGCGTC
*
80182650 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* * *
80182677 TTAGTGGCTCTGCCACATATATCTGTCT
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
80182705 -TGGTGGCTATGCCACAATAATCTG-AT
1 CTGGTGGCTCTGCCACAAT-ATCTGTAT
80182731 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
80182758 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
80182785 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
80182809 GCAATCTCGC
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 12 0.11
27 98 0.86
28 4 0.04
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:80182802 original size:81 final size:80
Alignment explanation
Indices: 80182650--80182808 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 80
80182640 AGGAAGCGTC
* *
80182650 CTGGTGGCTATGCCACAATTATCTGATTTAGTGGCTCTGCCACATATATCTGTCTTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATTTAGTGGCTCTGCCACATATATCTGTATTGGTGACTAT
80182715 GCCACAATAATCTGAT
66 GCCACAAT-ATCTGAT
* *
80182731 CTGGTGGCTCTGCCAC-ATATATCTG-TTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATT-TAGTGGCTCTGCCACATATATCTGTAT-TGGTGAC
*
80182793 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
80182809 GCAATCTCGC
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
80 19 0.28
81 50 0.72
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATTTAGTGGCTCTGCCACATATATCTGTATTGGTGACTAT
GCCACAATATCTGAT
Found at i:80188117 original size:26 final size:26
Alignment explanation
Indices: 80188060--80188166 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80188050 TGATACAAAT
80188060 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80188085 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80188111 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80188137 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80188163 TGAT
1 TGAT
80188167 GGAATTTCAT
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 23 0.29
26 55 0.71
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80189796 original size:27 final size:27
Alignment explanation
Indices: 80189756--80189896 Score: 173
Period size: 27 Copynumber: 5.2 Consensus size: 27
80189746 AGGAAACGTC
*
80189756 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
80189783 TTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
80189809 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
80189837 CTGGTGACTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
80189864 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
80189891 CTGGTG
1 CTGGTG
80189897 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 9, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.11
27 83 0.85
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:80189835 original size:54 final size:54
Alignment explanation
Indices: 80189753--80189899 Score: 242
Period size: 54 Copynumber: 2.7 Consensus size: 54
80189743 TGGAGGAAAC
* *
80189753 GTCCTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
80189807 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
* *
80189861 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACT
80189900 TCGTCACAAT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
53 6 0.07
54 82 0.93
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:80189907 original size:27 final size:27
Alignment explanation
Indices: 80189756--80189914 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
80189746 AGGAAACGTC
* *
80189756 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGACTCTGCCACAA-TATCTGTAT
* * *
80189783 TTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGACTCTGCCACA-ATATCTGTAT
* *
80189810 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGACTCTGCCACAA-TATCTGTAT
80189837 CTGGTGACTCTGCCACATATATCTGT-T
1 CTGGTGACTCTGCCACA-ATATCTGTAT
*
80189864 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGTAT
*
80189891 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
80189915 GCAGTCTCGC
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGACTCTGCCACAATATCTGTAT
Found at i:80189908 original size:81 final size:80
Alignment explanation
Indices: 80189756--80189914 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 80
80189746 AGGAAACGTC
* *
80189756 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGACTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
80189821 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* *
80189837 CTGGTGACTCTGCCAC-ATATATCTG-TTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGAC
1 CTGGTGACTATGCCACAAT-TATCTGATT-TGGTGGCTCTGCCACATATATCTGT-CCTGGTGAC
*
80189899 T-TCGTCACAATATCTG
63 TAT-GCCACAATATCTG
80189915 GCAGTCTCGC
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
80 19 0.28
81 50 0.72
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGACTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:80191584 original size:34 final size:34
Alignment explanation
Indices: 80191541--80191626 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 34
80191531 TACATTGTAT
* *
80191541 TCTGGTGTGTTGGTTGGTCTAGCTTATACGAGCA
1 TCTGGTGTGTTGGTTGGTCTAGCTCATACAAGCA
*
80191575 TCTGGTGTGTTGGTTGGTCTAGCTCATTCAAGCA
1 TCTGGTGTGTTGGTTGGTCTAGCTCATACAAGCA
* * *
80191609 TATGGTGTGCTGGATGGT
1 TCTGGTGTGTTGGTTGGT
80191627 TAACCGTGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.14, C:0.14, G:0.34, T:0.38
Consensus pattern (34 bp):
TCTGGTGTGTTGGTTGGTCTAGCTCATACAAGCA
Found at i:80192990 original size:28 final size:28
Alignment explanation
Indices: 80192925--80193055 Score: 133
Period size: 28 Copynumber: 4.8 Consensus size: 28
80192915 ACAAAATTTT
* *
80192925 CCACAAAGGCTTCTATTTTCTTAGATTG
1 CCACAAAGGCTTCCATTTTCTTAGATTA
* *
80192953 CCTCTAAGGCTTCCATTTTCTTAGATTA
1 CCACAAAGGCTTCCATTTTCTTAGATTA
* * *
80192981 CCATACAGGCTTCCA--TT-TTAGATACA
1 CCACAAAGGCTTCCATTTTCTTAGAT-TA
* * *
80193007 CCACAAAGACTTCCATTTTCTTATATTG
1 CCACAAAGGCTTCCATTTTCTTAGATTA
*
80193035 CAACAAAGGCTTCCATTTTCT
1 CCACAAAGGCTTCCATTTTCT
80193056 GACATGTTCA
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
25 6 0.07
26 15 0.18
28 56 0.68
29 5 0.06
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (28 bp):
CCACAAAGGCTTCCATTTTCTTAGATTA
Found at i:80193582 original size:154 final size:156
Alignment explanation
Indices: 80193372--80193777 Score: 453
Period size: 154 Copynumber: 2.6 Consensus size: 156
80193362 AATTCAGCGG
* *** * ** *
80193372 CTTTAGCGGCGCTTTACAAAAAACGCCTCAAAA-AATTTAACACAACGCCGTCGTTTTGTATTGA
1 CTTTAGCGACGCTTTTTGAAAAACGCCGCAAAAGAATTTTGCAAAACGCCGTCGTTTTGTATTGA
* * * *
80193436 GCCTTTAGTGGCTTCAGCGGCGCTTTTTAGAAACGCCGTTAAAGTTCGAGTATTAGCGGCA-CTT
66 GCTTTTAGTGGCTTTAGCGGCGCTTTTTAGAAACGCCGCTAAAGATCGAGTATTAGCGGCATCTT
** *
80193500 TTTAAAAAACGCCGCTA-ATGCTTGAT
131 TTTAAAAAACGCCGCTATA-GCTACAC
* * * * *
80193526 CTTTAGCGACG-TTTTTTAAAAACGCCGCAAAAGAATTTTGCAAAATGCCGTTGTTTTTTATTAA
1 CTTTAGCGACGCTTTTTGAAAAACGCCGCAAAAGAATTTTGCAAAACGCCGTCGTTTTGTATTGA
* * * * * *
80193590 GCTTTTAGTGGCTTTAGCGGTGCCTTTTAAAAATGCCGCTAAAGATCTAGTATTAGCGGCATTTT
66 GCTTTTAGTGGCTTTAGCGGCGCTTTTTAGAAACGCCGCTAAAGATCGAGTATTAGCGGCATCTT
** *
80193655 TTTATGAAACGCCGCTATAGGTACAC
131 TTTAAAAAACGCCGCTATAGCTACAC
* * * *
80193681 CTTTAGCGGCGCTTTTTGAAAAACGCCGCTAAAGAATTTTGCAAAACGCCATCATTTTGTATTGA
1 CTTTAGCGACGCTTTTTGAAAAACGCCGCAAAAGAATTTTGCAAAACGCCGTCGTTTTGTATTGA
* *
80193746 GCTTTTAGTTGCTTTAGCGGCTCTTTTT-GAAA
66 GCTTTTAGTGGCTTTAGCGGCGCTTTTTAGAAA
80193778 AACAGCACAA
Statistics
Matches: 206, Mismatches: 42, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
153 17 0.08
154 86 0.42
155 33 0.16
156 70 0.34
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (156 bp):
CTTTAGCGACGCTTTTTGAAAAACGCCGCAAAAGAATTTTGCAAAACGCCGTCGTTTTGTATTGA
GCTTTTAGTGGCTTTAGCGGCGCTTTTTAGAAACGCCGCTAAAGATCGAGTATTAGCGGCATCTT
TTTAAAAAACGCCGCTATAGCTACAC
Found at i:80194053 original size:14 final size:13
Alignment explanation
Indices: 80194023--80194087 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 13
80194013 TAGAGATTAT
80194023 GGTTTAAGGG-T-
1 GGTTTAAGGGTTG
80194034 GGTTTAAGGGTTGG
1 GGTTTAAGGGTT-G
* *
80194048 GGTTTAAGGTTTA
1 GGTTTAAGGGTTG
80194061 GGTGTTAAGGGTTAAG
1 GGT-TTAAGGGTT--G
80194077 GGTTT-AGGGTT
1 GGTTTAAGGGTT
80194088 TATGTTTTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
11 10 0.23
12 1 0.02
13 3 0.07
14 25 0.57
15 2 0.05
16 3 0.07
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.38
Consensus pattern (13 bp):
GGTTTAAGGGTTG
Found at i:80194060 original size:7 final size:7
Alignment explanation
Indices: 80194034--80194139 Score: 54
Period size: 7 Copynumber: 14.9 Consensus size: 7
80194024 GTTTAAGGGT
80194034 GGTTTAA
1 GGTTTAA
* **
80194041 GGGTTGG
1 GGTTTAA
80194048 GGTTTAA
1 GGTTTAA
80194055 GGTTT-A
1 GGTTTAA
80194061 GGTGTTAA
1 GGT-TTAA
*
80194069 GGGTTAA
1 GGTTTAA
*
80194076 GGGTTTAG
1 -GGTTTAA
80194084 GGTTT-A
1 GGTTTAA
* *
80194090 TGTTTTA
1 GGTTTAA
*
80194097 GGATTTAT
1 GG-TTTAA
* *
80194105 GATTTAG
1 GGTTTAA
80194112 GGTTTAA
1 GGTTTAA
* *
80194119 GGATTAG
1 GGTTTAA
80194126 GAGTTTAA
1 G-GTTTAA
80194134 GGTTTA
1 GGTTTA
80194140 GATTAATTAG
Statistics
Matches: 71, Mismatches: 22, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
6 8 0.11
7 46 0.65
8 17 0.24
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (7 bp):
GGTTTAA
Found at i:80194096 original size:14 final size:14
Alignment explanation
Indices: 80194079--80194117 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
80194069 GGGTTAAGGG
*
80194079 TTTAGGGTTTATGT
1 TTTAGGGTTTATGA
*
80194093 TTTAGGATTTATGA
1 TTTAGGGTTTATGA
80194107 TTTAGGGTTTA
1 TTTAGGGTTTA
80194118 AGGATTAGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.54
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:80194132 original size:22 final size:22
Alignment explanation
Indices: 80194047--80194139 Score: 68
Period size: 22 Copynumber: 4.3 Consensus size: 22
80194037 TTAAGGGTTG
* * *
80194047 GGGTTTAAGGTTTAGGTGTTAA
1 GGGTTTAAGGATTAGGAGTTTA
*
80194069 GGG-TTAAGGGTTTAGG-GTTTA
1 GGGTTTAA-GGATTAGGAGTTTA
* * *
80194090 -TGTTTTAGGATTTATGA-TTTA
1 GGGTTTAAGGA-TTAGGAGTTTA
80194111 GGGTTTAAGGATTAGGAGTTTA
1 GGGTTTAAGGATTAGGAGTTTA
*
80194133 AGGTTTA
1 GGGTTTA
80194140 GATTAATTAG
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
20 3 0.05
21 24 0.43
22 29 0.52
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (22 bp):
GGGTTTAAGGATTAGGAGTTTA
Found at i:80194321 original size:15 final size:16
Alignment explanation
Indices: 80194301--80194339 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
80194291 TACTATTTTA
80194301 AGGTTTATGG-ATTAT
1 AGGTTTATGGCATTAT
80194316 AGGTTTA-GGCATTAT
1 AGGTTTATGGCATTAT
80194331 A-GTTTATGG
1 AGGTTTATGG
80194340 TTCAAGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.26, C:0.03, G:0.28, T:0.44
Consensus pattern (16 bp):
AGGTTTATGGCATTAT
Found at i:80195126 original size:22 final size:22
Alignment explanation
Indices: 80195098--80195140 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
80195088 CGGCGCTTTG
*
80195098 TATGAAAATGCCGCAAACTATA
1 TATGAAAATGCCACAAACTATA
80195120 TATGAAAATGCCACAAACTAT
1 TATGAAAATGCCACAAACTAT
80195141 CGACCCTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.23
Consensus pattern (22 bp):
TATGAAAATGCCACAAACTATA
Found at i:80196563 original size:26 final size:26
Alignment explanation
Indices: 80196515--80196564 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
80196505 TAATACGGTG
* *
80196515 TTAAAAATACATACATCATATAGTTA
1 TTAAAAATACATACATAAGATAGTTA
* *
80196541 TTAAAAATATATATATAAGATAGT
1 TTAAAAATACATACATAAGATAGT
80196565 ACAAAAACAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (26 bp):
TTAAAAATACATACATAAGATAGTTA
Found at i:80196729 original size:27 final size:26
Alignment explanation
Indices: 80196668--80196726 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
80196658 AAAAGGATAG
*
80196668 ATATATAATATAGTATGAAAAATATAT
1 ATATATAAGATAG-ATGAAAAATATAT
* * *
80196695 GTACATAAGATA-ATGTAAAATATAT
1 ATATATAAGATAGATGAAAAATATAT
80196720 ATATATA
1 ATATATA
80196727 TAACTAATAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
25 17 0.65
27 9 0.35
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (26 bp):
ATATATAAGATAGATGAAAAATATAT
Found at i:80196949 original size:24 final size:26
Alignment explanation
Indices: 80196920--80196982 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 26
80196910 ATATACGAAG
*
80196920 CAATTTAAAGTAGA-TAATATA-AA-A
1 CAATTTAAAATA-ATTAATATATAACA
80196944 CAATTTAAAATAATTAATATATAACA
1 CAATTTAAAATAATTAATATATAACA
*
80196970 TAATTTAAAATAA
1 CAATTTAAAATAA
80196983 AATAAAGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 1 0.03
24 18 0.53
25 2 0.06
26 13 0.38
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (26 bp):
CAATTTAAAATAATTAATATATAACA
Found at i:80197242 original size:29 final size:28
Alignment explanation
Indices: 80197212--80197267 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
80197202 AAGGATTTTA
*
80197212 AAATAACAGTATGT-AAAGACTTAAAAAT
1 AAATAA-AGTATATGAAAGACTTAAAAAT
* *
80197240 AAATAATGTATATGAAAGATTTAAAAAT
1 AAATAAAGTATATGAAAGACTTAAAAAT
80197268 GACAGTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.29
Consensus pattern (28 bp):
AAATAAAGTATATGAAAGACTTAAAAAT
Found at i:80200541 original size:105 final size:105
Alignment explanation
Indices: 80200410--80200765 Score: 610
Period size: 105 Copynumber: 3.4 Consensus size: 105
80200400 GCCGTTAAAG
* * *
80200410 TTTTATTTTA-TTTT-AATTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTT
80200473 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
80200513 TTTTATTTTATTTTTAAATTAACTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTT
* *
80200578 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAT
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
80200618 TTTTATTTTATTTTTAAATTATCTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTT
*
80200683 TATTTTATTTTAATTTAATCA-AAAAAATATTTTGTCTAC
66 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
80200722 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTT
80200766 TTAAATATTG
Statistics
Matches: 239, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
103 10 0.04
104 62 0.26
105 167 0.70
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAACTTTTATTTTAAATATTT
TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTAC
Found at i:80200563 original size:48 final size:48
Alignment explanation
Indices: 80200511--80200765 Score: 141
Period size: 48 Copynumber: 5.0 Consensus size: 48
80200501 TATTTTGTCT
*
80200511 ACTTTTATTTTATTTTTAAATTAACTAATTAAAGTAAATTGTATTTAA
1 ACTTTTATTTTATTTTTAAATTATCTAATTAAAGTAAATTGTATTTAA
** * * * * * * **
80200559 ACTTTTATTTTAAATATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCT
1 ACTTTTATTTT--AT-TTTTAAATTA-TCTA-ATTAA--A-GTAAATTGTATT-TAA
*
80200616 ATTTTTATTTTATTTTTAAATTATCTAATTAAAGTAAATTGTATTTAA
1 ACTTTTATTTTATTTTTAAATTATCTAATTAAAGTAAATTGTATTTAA
** * ** * * * **
80200664 ACTTTTATTTTAAATATTTTATTTTATTTTAATTTAATCAAAAAAATATTTTGTCT
1 ACTTTTATTTT--AT-TTTTAAATTA-TCTAA-TTAA--AGTAAATTGTATT-TAA
* *
80200720 ACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
1 ACTTTTATTTTATTTTTAAATTATCTAATTAAAGTAAATTGTATTT
80200766 TTAAATATTG
Statistics
Matches: 148, Mismatches: 42, Indels: 34
0.66 0.19 0.15
Matches are distributed among these distances:
48 23 0.16
49 16 0.11
50 5 0.03
51 20 0.14
52 13 0.09
53 19 0.13
54 10 0.07
55 11 0.07
56 20 0.14
57 11 0.07
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (48 bp):
ACTTTTATTTTATTTTTAAATTATCTAATTAAAGTAAATTGTATTTAA
Found at i:80201112 original size:9 final size:9
Alignment explanation
Indices: 80201040--80201149 Score: 74
Period size: 9 Copynumber: 13.0 Consensus size: 9
80201030 ATATCATATC
80201040 TTACATAAT
1 TTACATAAT
80201049 TTACATAAT
1 TTACATAAT
*
80201058 TTACATAAC
1 TTACATAAT
80201067 TTACATAA-
1 TTACATAAT
80201075 -TACATAA-
1 TTACATAAT
*
80201082 ATACAT-A-
1 TTACATAAT
80201089 -TA-AT-AT
1 TTACATAAT
80201095 CTTACATAAT
1 -TTACATAAT
*
80201105 TTACATAAG
1 TTACATAAT
* * * *
80201114 ATAAACAAC
1 TTACATAAT
*
80201123 TTAGATAAT
1 TTACATAAT
*
80201132 TTACATAAC
1 TTACATAAT
80201141 TTACATAAT
1 TTACATAAT
80201150 ACATAAATAT
Statistics
Matches: 82, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
5 3 0.04
6 2 0.02
7 8 0.10
8 7 0.09
9 60 0.73
10 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (9 bp):
TTACATAAT
Found at i:80201124 original size:56 final size:56
Alignment explanation
Indices: 80201020--80201131 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 56
80201010 AATCCCATCA
* * ** * *
80201020 ACATAAATATATATCATATCTTACATAATTTACATAATTTACATAACTTACATAAT
1 ACATAAATACATATAATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
*
80201076 ACATAAATACATATAATATCTTACATAATTTACATAAGATAAACAACTTAGATAAT
1 ACATAAATACATATAATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
80201132 TTACATAACT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (56 bp):
ACATAAATACATATAATATCTTACATAATTTACATAAGATAAACAACTTACATAAT
Found at i:80206165 original size:13 final size:14
Alignment explanation
Indices: 80206149--80206177 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80206139 TTATAAATAT
80206149 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
80206162 TTATAATGGTTTAA
1 TTATAATGGTTTAA
80206176 TT
1 TT
80206178 CGTTGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:80206615 original size:21 final size:21
Alignment explanation
Indices: 80206590--80206635 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
80206580 TAGAGCGGAT
*
80206590 GCAGCAGCGAG-GAAGGCAGCG
1 GCAGCAGCGAGAG-AGGCAGAG
80206611 GCAGCAGCGAGAGAGGCAGAG
1 GCAGCAGCGAGAGAGGCAGAG
80206632 GCAG
1 GCAG
80206636 TAGCAGTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.48, T:0.00
Consensus pattern (21 bp):
GCAGCAGCGAGAGAGGCAGAG
Found at i:80206939 original size:31 final size:31
Alignment explanation
Indices: 80206897--80206993 Score: 140
Period size: 31 Copynumber: 3.1 Consensus size: 31
80206887 TGTATTTTTT
*
80206897 ATGCTACATTTGTTGTATTTGGTTGGGTTCA
1 ATGCTATATTTGTTGTATTTGGTTGGGTTCA
*
80206928 ATGCTATATTTGCTGTATTTGGTTGGGTTCA
1 ATGCTATATTTGTTGTATTTGGTTGGGTTCA
* * * *
80206959 ATGCTATATTTTTTGTTTTTGGTTGGATTTA
1 ATGCTATATTTGTTGTATTTGGTTGGGTTCA
80206990 ATGC
1 ATGC
80206994 AAGAAGGGTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (31 bp):
ATGCTATATTTGTTGTATTTGGTTGGGTTCA
Found at i:80207113 original size:43 final size:43
Alignment explanation
Indices: 80207066--80207246 Score: 265
Period size: 43 Copynumber: 4.2 Consensus size: 43
80207056 TAACAAAAGT
* * *
80207066 GCCGCTAAAAGG-CATGACTTTTAGCGGCGCTTTTCCCATAAAC
1 GCCGCT-AAAGGCCATGACTTTTAGCGGTGCCTTTCCCACAAAC
** *
80207109 GCCGCTAAAGGCCATGACTTTTAGCTATACCTTTCCCACAAAC
1 GCCGCTAAAGGCCATGACTTTTAGCGGTGCCTTTCCCACAAAC
*
80207152 GCCGCTAAAGGCCATGACTTTTAGCTGTGCCTTTCCCACAAAC
1 GCCGCTAAAGGCCATGACTTTTAGCGGTGCCTTTCCCACAAAC
*
80207195 GCCGCTAAAGGCCATGACTTTTAGCGGTGCTTTTCCCACAAAC
1 GCCGCTAAAGGCCATGACTTTTAGCGGTGCCTTTCCCACAAAC
*
80207238 GCCGTTAAA
1 GCCGCTAAA
80207247 AGTCATAATC
Statistics
Matches: 126, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
42 5 0.04
43 121 0.96
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGGCCATGACTTTTAGCGGTGCCTTTCCCACAAAC
Found at i:80211051 original size:42 final size:43
Alignment explanation
Indices: 80210987--80211096 Score: 161
Period size: 42 Copynumber: 2.6 Consensus size: 43
80210977 TTTTGTCCAT
* *
80210987 ACGGGCAGAGACACGGGCGTGTGTCTT-AGCCGTGTGTGACAC
1 ACGGCCAGAGACACGGGCGTGTGTCTTCAGCCGTATGTGACAC
80211029 ACGGCCAGAGACACGGGCGTGTGT-TTCAGCCGTATGTGACAC
1 ACGGCCAGAGACACGGGCGTGTGTCTTCAGCCGTATGTGACAC
* *
80211071 ATGGCCAGATGACACGGCCGTGTGTC
1 ACGGCCAGA-GACACGGGCGTGTGTC
80211097 CCCTGTATCT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
41 2 0.03
42 45 0.74
43 14 0.23
ACGTcount: A:0.20, C:0.25, G:0.35, T:0.19
Consensus pattern (43 bp):
ACGGCCAGAGACACGGGCGTGTGTCTTCAGCCGTATGTGACAC
Found at i:80216110 original size:22 final size:22
Alignment explanation
Indices: 80216062--80216113 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
80216052 AATATTCAAA
* *
80216062 ATTCAAAATATTTATAATTTTT
1 ATTCAAAATATTTATAATATAT
*
80216084 TTTCAAAAT-TTTATAAATATAT
1 ATTCAAAATATTTAT-AATATAT
80216106 ATTCAAAA
1 ATTCAAAA
80216114 AATAAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTCAAAATATTTATAATATAT
Found at i:80222116 original size:8 final size:8
Alignment explanation
Indices: 80222090--80222124 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
80222080 GCACAGTATG
80222090 ATAATTTT
1 ATAATTTT
*
80222098 AT-ATTTG
1 ATAATTTT
80222105 ATAATTTT
1 ATAATTTT
80222113 ATAATTTT
1 ATAATTTT
80222121 ATAA
1 ATAA
80222125 CAGTTTACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 6 0.25
8 18 0.75
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (8 bp):
ATAATTTT
Found at i:80226676 original size:21 final size:21
Alignment explanation
Indices: 80226650--80226706 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
80226640 ATAAATAAAA
80226650 ACCTTGGCCACCTACTCCACC
1 ACCTTGGCCACCTACTCCACC
*
80226671 ACCTTGGCCACCAACTCCACC
1 ACCTTGGCCACCTACTCCACC
80226692 ACCCTTGGCCACCTA
1 A-CCTTGGCCACCTA
80226707 AACCACCCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.21, C:0.51, G:0.11, T:0.18
Consensus pattern (21 bp):
ACCTTGGCCACCTACTCCACC
Found at i:80226832 original size:19 final size:20
Alignment explanation
Indices: 80226779--80226832 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
80226769 AGGGGGTGGT
* *
80226779 TTTTGTTTTTTTTGAGAAGG
1 TTTTCTTTTTTTTGAGGAGG
*
80226799 ATTGTTCTTTGTTTTGAGGAGG
1 -TT-TTCTTTTTTTTGAGGAGG
80226821 TTTT-TTTTTTTT
1 TTTTCTTTTTTTT
80226833 TTGGAGGTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 7 0.25
20 2 0.07
21 4 0.14
22 15 0.54
ACGTcount: A:0.11, C:0.02, G:0.22, T:0.65
Consensus pattern (20 bp):
TTTTCTTTTTTTTGAGGAGG
Found at i:80226838 original size:19 final size:21
Alignment explanation
Indices: 80226806--80226858 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 21
80226796 AGGATTGTTC
**
80226806 TTTGTTTTGAGGAGGT-TTTT
1 TTTGTTTTTTGGAGGTGTTTT
80226826 TTT-TTTTTTGGAGGTGTTTT
1 TTTGTTTTTTGGAGGTGTTTT
80226846 TTTGTTTTTTGGA
1 TTTGTTTTTTGGA
80226859 AAGAAGGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 10 0.34
20 10 0.34
21 9 0.31
ACGTcount: A:0.08, C:0.00, G:0.26, T:0.66
Consensus pattern (21 bp):
TTTGTTTTTTGGAGGTGTTTT
Found at i:80227199 original size:3 final size:3
Alignment explanation
Indices: 80227185--80227269 Score: 63
Period size: 3 Copynumber: 28.3 Consensus size: 3
80227175 GAGCTTCGTT
* *
80227185 TTA TTA TT- TTA TTA TTT TTA CTA -TA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
80227228 TTTA TCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 -TTA TTA T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
80227270 ATATGCCCTC
Statistics
Matches: 67, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 8 0.12
3 49 0.73
4 10 0.15
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:80227242 original size:27 final size:29
Alignment explanation
Indices: 80227186--80227250 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
80227176 AGCTTCGTTT
* *
80227186 TATTATT-TTATTATTTTTACTATATTTA
1 TATTATTATTATTATTTATACTATATATA
*
80227214 TATTATTATTATTATTTAT-C-ATGTATA
1 TATTATTATTATTATTTATACTATATATA
80227241 TATTATTATT
1 TATTATTATT
80227251 TATATTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.45
28 8 0.24
29 10 0.30
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.65
Consensus pattern (29 bp):
TATTATTATTATTATTTATACTATATATA
Found at i:80230113 original size:19 final size:19
Alignment explanation
Indices: 80230091--80230137 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
80230081 CTTCCTTTCT
80230091 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
80230110 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
80230129 TTTGCATTA
1 TTTGCATTA
80230138 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:80232965 original size:16 final size:16
Alignment explanation
Indices: 80232921--80232965 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
80232911 AAAGGCAAAA
*
80232921 AAAAAAAAAAAAACAC
1 AAAAAAAACAAAACAC
*
80232937 -AAAAACACAAAAACAC
1 AAAAAAAAC-AAAACAC
80232953 AAAAAAAACAAAA
1 AAAAAAAACAAAA
80232966 AAATTCTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 6 0.25
16 11 0.46
17 7 0.29
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAACAAAACAC
Found at i:80234210 original size:66 final size:66
Alignment explanation
Indices: 80234110--80234236 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
80234100 CATTCATATA
*
80234110 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACACATT
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
80234175 C
66 C
*
80234176 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACA
1 ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACA
80234237 TAAGCATAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (66 bp):
ATAACACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATCATTTGACACATT
C
Found at i:80234484 original size:128 final size:130
Alignment explanation
Indices: 80234288--80234629 Score: 358
Period size: 128 Copynumber: 2.6 Consensus size: 130
80234278 TAGAATCAGT
* * * * * * *
80234288 GAATTCACAAGCCTTAAGCCC-CTAAGCAATAGGGTAACAG-GCTAAGATTTACAGATCTTAACC
1 GAATTTACAAACCTTAA-CCCTCTAAGCAGTAGGGAAACAGATCAAAGA-TGA-AGATCTTAACC
* *
80234351 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGG-TCTTAAACCCCTAATC-GATAGGGTAAC
63 CCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGCT-TTAAACCCCTAAGCAG-TAGGGTAAC
80234414 -AGACC
126 AAG-CC
* * * * *
80234419 GAA-TTGCAGATCTT-ACTCC-CTAAGTAGTAGGGAAACAGATCGAAGATGAAGATCTTAACCCC
1 GAATTTACAAACCTTAAC-CCTCTAAGCAGTAGGGAAACAGATCAAAGATGAAGATCTTAACCCC
* * *
80234481 CTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGC
65 CTAAGCAGTAGGGAAACAGATCAAAGACGAAGGGCTTTAAACCCCTAAGCAGTAGGGTAACAAGC
*
80234546 T
130 C
* **
80234547 GAATTTACAAACCTTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCC
1 GAATTTACAAACCTTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGATGAAGATC-TTAACCCC
*
80234612 CTAAGCAGTAGGGTAACA
65 CTAAGCAGTAGGGAAACA
80234630 AGCCGAATTT
Statistics
Matches: 176, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
128 70 0.40
129 35 0.20
130 43 0.24
131 28 0.16
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (130 bp):
GAATTTACAAACCTTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGATGAAGATCTTAACCCCC
TAAGCAGTAGGGAAACAGATCAAAGACGAAGGGCTTTAAACCCCTAAGCAGTAGGGTAACAAGCC
Found at i:80234491 original size:43 final size:44
Alignment explanation
Indices: 80234300--80234935 Score: 367
Period size: 43 Copynumber: 14.6 Consensus size: 44
80234290 ATTCACAAGC
* * * * *
80234300 CTTAAGCCCCTAAGCAATAGGGTAACAG-GCTAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGA-TGACAGAT
* * *
80234344 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACA-GAT
* * * *
80234388 CTTAAACCCCTAATC-GATAGGGTAACAGACCGAA-TTG-CAGAT
1 CTTAACCCCCTAAGCAG-TAGGGTAACAGATCGAAGATGACAGAT
* * *
80234430 CTT-ACTCCCTAAGTAGTAGGGAAACAGATCGAAGATGA-AGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * **
80234472 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
80234515 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCTGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGACAGAT
* * * * **
80234559 CTTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
80234602 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGACAGAT
* * * * **
80234646 CTTAACCCCCTAAGCAGTAGGGAAACAAATCAAAGATGA-TGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * *
80234689 CTTTAACCCCCTAAGCAGTAGGGTAACA-AGCCGAA-TTTACAAAC
1 C-TTAACCCCCTAAGCAGTAGGGTAACAGA-TCGAAGATGACAGAT
* * * * *
80234733 CTTAACCCCCTAAGCAGTAGGGTAACA-AGCTGAA-TTTACAAAC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGATGACAGAT
* * * * *
80234776 CTTAAACCCCAAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATC-GAAGA-TGACAGAT
* * * * * *
80234821 CTTAGCCCCCTAACCAGTAGGGTAACAGGTTGAA-TTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* * * * ** **
80234864 CTTAACCCCTTAAGCAGTTGGGAAATAGATCGAAGATGATGGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
* *
80234908 CTTAAACCCCTAAGTAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
80234936 GCTGGAAATT
Statistics
Matches: 457, Mismatches: 108, Indels: 54
0.74 0.17 0.09
Matches are distributed among these distances:
41 22 0.05
42 16 0.04
43 207 0.45
44 173 0.38
45 39 0.09
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (44 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGATCGAAGATGACAGAT
Found at i:80234563 original size:87 final size:87
Alignment explanation
Indices: 80234472--80234759 Score: 540
Period size: 87 Copynumber: 3.3 Consensus size: 87
80234462 AGATGAAGAT
80234472 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
*
80234537 GTAACAAGCTGAATTTACAAAC
66 GTAACAAGCCGAATTTACAAAC
*
80234559 CTTAACCCTCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
80234624 GTAACAAGCCGAATTTACAAAC
66 GTAACAAGCCGAATTTACAAAC
*
80234646 CTTAACCCCCTAAGCAGTAGGGAAACAAATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
80234711 GTAACAAGCCGAATTTACAAAC
66 GTAACAAGCCGAATTTACAAAC
*
80234733 CTTAACCCCCTAAGCAGTAGGGTAACA
1 CTTAACCCCCTAAGCAGTAGGGAAACA
80234760 AGCTGAATTT
Statistics
Matches: 196, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 196 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (87 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
GTAACAAGCCGAATTTACAAAC
Found at i:80234651 original size:130 final size:130
Alignment explanation
Indices: 80234517--80234848 Score: 346
Period size: 130 Copynumber: 2.5 Consensus size: 130
80234507 ATGATGGGCT
* *
80234517 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAACCTTAACCCTCTAAGCAGTAGGGA
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAACCTTAACCCCCTAAGCAGTAGGGT
* **** *
80234582 AACAGA-TCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAAC
66 AACAGAGCCAAA-ATGACAAACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAAC
80234646 C
130 C
* * * * * **** *
80234647 TTAACCCCCTAAGCAGTAGGGAAACAA-ATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCT-GAA-TTTACAAACCTTAACCCCCTAAGCAGTAGG
* * * *
80234711 GTAACA-AGCCGAATTTACAAACCTTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAA
64 GTAACAGAGCCAAAATGACAAACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAA
80234775 CC
129 CC
* * * * * *
80234777 TTAAACCCCAAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAGCCCCCTAACCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTTACAAACCTTAACCCCCTAAGCAGTAGG
80234842 GTAACAG
64 GTAACAG
80234849 GTTGAATTTA
Statistics
Matches: 157, Mismatches: 38, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
129 1 0.01
130 97 0.62
131 58 0.37
132 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (130 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAACCTTAACCCCCTAAGCAGTAGGGT
AACAGAGCCAAAATGACAAACCTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACC
Found at i:80234868 original size:88 final size:86
Alignment explanation
Indices: 80234517--80234881 Score: 313
Period size: 87 Copynumber: 4.2 Consensus size: 86
80234507 ATGATGGGCT
* * * * *
80234517 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAACCTTAACCCTCTAAGCAGTAGGGA
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCCTAACCAGTAGGGT
* * * * **** *
80234582 AAC-AGATCAAAGATGATGGGCT
66 AACAAGCT-GAA-TTTACAAACC
* * *
80234604 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCCTAAGCAGTAGGGA
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCCTAACCAGTAGGGT
* * * * **** *
80234669 AACAA-ATCAAAGATGATGGGCT
66 AACAAGCT-GAA-TTTACAAACC
* *
80234691 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCCTAAGCAGTAGGGT
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCCTAACCAGTAGGGT
80234756 AACAAGCTGAATTTACAAACC
66 AACAAGCTGAATTTACAAACC
* * * * *
80234777 TTAAACCCCAAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAGCCCCCTAACCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAACCTTAACCCCCTAACCAGTAGG
* * * *
80234842 GTAACAGGTTGAATTTACAGATC
64 GTAACAAGCTGAATTTACAAACC
80234865 TT-AACCCCTTAAGCAGT
1 TTAAACCCC-TAAGCAGT
80234882 TGGGAAATAG
Statistics
Matches: 249, Mismatches: 24, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
86 30 0.12
87 161 0.65
88 58 0.23
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (86 bp):
TTAAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCCTAACCAGTAGGGT
AACAAGCTGAATTTACAAACC
Found at i:80234873 original size:130 final size:130
Alignment explanation
Indices: 80234604--80234881 Score: 335
Period size: 130 Copynumber: 2.1 Consensus size: 130
80234594 ATGATGGGCT
* *
80234604 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAACCCCCTAAGCAGTAGGGA
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCAAAGCAGTAGGGA
*** *
80234669 AACAAATCAAAGATGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACC
66 AACAAATCAAAGATGAAAAGCTTTAACCCCCTAACCAGTAGGGTAACAAGCCGAATTTACAAACC
* *
80234734 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAAACCTTAAACCCCAAAGCAGTAGGGT
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCAAAGCAGTAGGGA
** * * * * * ** *
80234799 AAC-AGGCTGAAGATTTACAAATC-TTAGCCCCCTAACCAGTAGGGTAACAGGTTGAATTTACAG
66 AACAAATC-AAAGA-TGA-AAAGCTTTAACCCCCTAACCAGTAGGGTAACAAGCCGAATTTACAA
*
80234862 ATC
128 ACC
*
80234865 TTAACCCCTTAAGCAGT
1 TTAACCCCCTAAGCAGT
80234882 TGGGAAATAG
Statistics
Matches: 125, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
129 2 0.02
130 68 0.54
131 54 0.43
132 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.21
Consensus pattern (130 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAACCTTAAACCCCAAAGCAGTAGGGA
AACAAATCAAAGATGAAAAGCTTTAACCCCCTAACCAGTAGGGTAACAAGCCGAATTTACAAACC
Found at i:80234900 original size:88 final size:88
Alignment explanation
Indices: 80234691--80234888 Score: 231
Period size: 88 Copynumber: 2.3 Consensus size: 88
80234681 ATGATGGGCT
* * * * * *
80234691 TTAACCCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAAACCTTAACCCCCTAAGCAGTAGG
1 TTAAACCCCAAAGCAGTAGGGAAACAGGCTGAAGATTTACAAACCTTAACCCCCTAACCAGTAGG
80234754 GTAACAAGCTGAATTTACAAACC
66 GTAACAAGCTGAATTTACAAACC
* * *
80234777 TTAAACCCCAAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCTTAGCCCCCTAACCAGTAGG
1 TTAAACCCCAAAGCAGTAGGGAAACAGGCTGAAGATTTACAAACCTTAACCCCCTAACCAGTAGG
* * * *
80234842 GTAACAGGTTGAATTTACAGATC
66 GTAACAAGCTGAATTTACAAACC
* *
80234865 TT-AACCCCTTAAGCAGTTGGGAAA
1 TTAAACCCC-AAAGCAGTAGGGAAA
80234889 TAGATCGAAG
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
86 27 0.28
87 7 0.07
88 61 0.64
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (88 bp):
TTAAACCCCAAAGCAGTAGGGAAACAGGCTGAAGATTTACAAACCTTAACCCCCTAACCAGTAGG
GTAACAAGCTGAATTTACAAACC
Found at i:80235070 original size:68 final size:68
Alignment explanation
Indices: 80234953--80235151 Score: 294
Period size: 68 Copynumber: 2.9 Consensus size: 68
80234943 ATTACAAATT
*
80234953 TCTTTT-TCCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG-
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
*
80235016 AGGA
66 A-AA
* *
80235020 TCTTTTCTTCCTGAAATGGCGTTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTTTCAGC
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
80235085 AAA
66 AAA
* * ** *
80235088 CCTCTTCTTCCAAAAATGGCATTGGAGAGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
1 TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAG
80235152 TGGAAGAAGA
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
67 6 0.05
68 112 0.94
69 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (68 bp):
TCTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTTCAGC
AAA
Found at i:80235311 original size:44 final size:44
Alignment explanation
Indices: 80235263--80235989 Score: 615
Period size: 44 Copynumber: 16.5 Consensus size: 44
80235253 GATTTTAGCA
* *
80235263 TGGCATCCCTGTGCTTATAGAGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* *
80235307 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * *
80235351 TGGCATCCCTGTACTTATAGGGAAC-GGATCGAAGATAGT-AGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATA-TCAGATT
* * * * *
80235395 TGACATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAATATCAGATT
* * * * * * *
80235439 TGACATTCTTGTGCTTATAGTGAAGC-AGATCGAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAG-TTGAAAATATCAG-ATT
* *
80235483 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
80235527 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * *
80235571 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
* *
80235615 TGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * *
80235659 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * * * * *
80235703 TGACATTCCTGTGCTTACA-GTAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
* *
80235746 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATTAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* * * *
80235790 TGGCATCCCTGTGCTTATAGGGAACGAA-TCGAAGATAGCAGATC
1 TGGCATCCCTGTGCTTATAGGGAAC-AAGTTGAAAATATCAGATT
* * * * * * *
80235834 TGACATTCCTGTGCTTACAGTGAAGC-AGATCAAAGATTTCAGCA--
1 TGGCATCCCTGTGCTTATAGGGAA-CAAGTTGAAA-ATATCAG-ATT
*
80235878 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
* *
80235922 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
80235966 TGGCATCCCTGTGCTTATAGGGAA
1 TGGCATCCCTGTGCTTATAGGGAA
80235990 TGGATCGAAG
Statistics
Matches: 551, Mismatches: 103, Indels: 58
0.77 0.14 0.08
Matches are distributed among these distances:
42 4 0.01
43 50 0.09
44 464 0.84
45 30 0.05
46 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATATCAGATT
Found at i:80235454 original size:132 final size:132
Alignment explanation
Indices: 80235351--80235989 Score: 980
Period size: 132 Copynumber: 4.8 Consensus size: 132
80235341 ACAACAGATT
* * * * * *
80235351 TGGCATCCCTGTACTTATAGGGAAC-GGATCGAAGATAGTAGATTTGACATCCCTGTGCTTATAG
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACAGTAGATTTGGCATCCCTGTGCTTATAG
* * * * *
80235415 GGAACAGATCGAAGATAGCAGATCTGACATTCTTGTGCTTATAGTGAAGCAGATCGAAGATTTCA
65 GGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGGGAAGCAGATCAAAGATTTCA
80235480 GCA
130 GCA
*
80235483 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGTAGATTTGGCATCCCTGTGCTTATAGG
*
80235548 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGGGAAGCAGATCAAAGATTTCAG
80235613 CA
131 CA
*
80235615 TGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAACA-TCAGATTTGGCATCCCTGTGCTTATAG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGT-AGATTTGGCATCCCTGTGCTTATAG
*
80235679 GGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACA-GTAAGCAGATCAAAGATTTCA
65 GGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGGGAAGCAGATCAAAGATTTCA
80235743 GCA
130 GCA
*
80235746 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATTAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGTAGATTTGGCATCCCTGTGCTTATAGG
* *
80235811 GAACGAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
66 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGGGAAGCAGATCAAAGATTTCAG
80235876 CA
131 CA
80235878 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA-TCAGATTTGGCATCCCTGTGCTTATAG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGT-AGATTTGGCATCCCTGTGCTTATAG
* * * * * * * * *
80235942 GGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGGGAA
65 GGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGGGAA
80235990 TGGATCGAAG
Statistics
Matches: 472, Mismatches: 30, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
131 126 0.27
132 345 0.73
133 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGTAGATTTGGCATCCCTGTGCTTATAGG
GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGGGAAGCAGATCAAAGATTTCAG
CA
Found at i:80235824 original size:263 final size:264
Alignment explanation
Indices: 80235390--80235948 Score: 1030
Period size: 263 Copynumber: 2.1 Consensus size: 264
80235380 CGAAGATAGT
* * *
80235390 AGATTTGACATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCTTGTGCTT
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
* *
80235455 ATAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
66 ACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
80235520 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGC
131 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGC
80235585 TTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAA
196 TTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAA
80235650 CATC
261 CATC
80235654 AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
80235719 ACAGT-AAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
66 ACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
** *
80235783 TTAGATTTGGCATCCCTGTGCTTATAGGGAACGAATCGAAGATAGCAGATCTGACATTCCTGTGC
131 GCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGC
*
80235848 TTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAA
196 TTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAA
80235913 CATC
261 CATC
80235917 AGATTTGGCATCCCTGTGCTTATAGGGAACAA
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAA
80235949 GTTGAAAACA
Statistics
Matches: 286, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
263 220 0.77
264 66 0.23
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (264 bp):
AGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTT
ACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
GCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGC
TTACAGTGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAA
CATC
Found at i:80235979 original size:263 final size:264
Alignment explanation
Indices: 80235351--80235982 Score: 1020
Period size: 263 Copynumber: 2.4 Consensus size: 264
80235341 ACAACAGATT
* * * * * *
80235351 TGGCATCCCTGTACTTATAGGGAAC-GGATCGAAGATAGT-AGATTTGACATCCCTGTGCTTATA
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACA-TCAGATTTGGCATCCCTGTGCTTATA
* * *
80235414 GGGAAC-AGATCGAAGATAGCAGATCTGACATTCTTGTGCTTATAGTGAAGCAGATCGAAGATTT
64 GGGAACAAG-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTT
80235478 CAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTT
128 CAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTT
80235543 ATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
193 ATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGAT
80235608 TTCAGCA
258 TTCAGCA
*
80235615 TGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
*
80235680 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT-AAGCAGATCAAAGATTTCAG
66 GAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
**
80235744 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATTAGATTTGGCATCCCTGTGCTTATA
131 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
*
80235809 GGGAACGAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTC
196 GGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTC
80235874 AGCA
261 AGCA
80235878 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
* * * * * * *
80235943 GAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTA
66 GAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTA
80235983 TAGGGAATGG
Statistics
Matches: 342, Mismatches: 23, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
263 247 0.72
264 93 0.27
265 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (264 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
GAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTCAG
CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
GGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCAAAGATTTC
AGCA
Found at i:80236026 original size:132 final size:131
Alignment explanation
Indices: 80235263--80235989 Score: 937
Period size: 132 Copynumber: 5.5 Consensus size: 131
80235253 GATTTTAGCA
* * * * * * * * *
80235263 TGGCATCCCTGTGCTTATAGAGAACAAGTTGAAAACATCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGG
* * * *** * * * * *
80235328 GAACAAGTTGAAA-ACAACAG-ATTTGGCATCCCTGTACTTATAGGGAAC-GGATCGAAGATAGT
66 GAA-GAGATCAAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAAACA-T
80235390 -AGATT
126 CAGATT
* * *
80235395 TGACATCCCTGTGCTTATAGGGAAC-AGATCGAAGATAGCAGATCTGACATTCTTGTGCTTATAG
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAG
* * *
80235459 TGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAG
65 GGAAG-AGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAG
80235524 ATT
129 ATT
* *
80235527 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
1 TGGCATCCCTGTGCTTATAGGGAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGG
*
80235592 GAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAACATCAGA
66 GAAG-AGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGA
80235657 TT
130 TT
*
80235659 TGGCATCCCTGTGCTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACA-G
1 TGGCATCCCTGTGCTTATAGGGAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGG
* *
80235723 TAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATTAGA
66 GAAG-AGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGA
80235788 TT
130 TT
80235790 TGGCATCCCTGTGCTTATAGGGAACGAA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAG
1 TGGCATCCCTGTGCTTATAGGGAAC-AAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAG
*
80235854 TGAAGCAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAG
65 GGAAG-AGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAG
80235919 ATT
129 ATT
* * * * * * * *
80235922 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAACAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGG
80235987 GAA
66 GAA
80235990 TGGATCGAAG
Statistics
Matches: 538, Mismatches: 47, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
131 128 0.24
132 403 0.75
133 6 0.01
134 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (131 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGG
GAAGAGATCAAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACATCAGAT
T
Found at i:80236383 original size:21 final size:21
Alignment explanation
Indices: 80236357--80236413 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
80236347 ATAAATAAAA
80236357 ACCTTGGCCACCTACTCCACC
1 ACCTTGGCCACCTACTCCACC
*
80236378 ACCTTGGCCACCAACTCCACC
1 ACCTTGGCCACCTACTCCACC
80236399 ACCCTTGGCCACCTA
1 A-CCTTGGCCACCTA
80236414 AACCACCCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.21, C:0.51, G:0.11, T:0.18
Consensus pattern (21 bp):
ACCTTGGCCACCTACTCCACC
Found at i:80236552 original size:24 final size:22
Alignment explanation
Indices: 80236522--80236574 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
80236512 TTGTTCTTTG
80236522 TTTTGGAGGAGGTTTTTTTTTATT
1 TTTTGGAGG-GG-TTTTTTTTATT
* *
80236546 TTTTGGAGGTGTTTTTTTTGTT
1 TTTTGGAGGGGTTTTTTTTATT
80236568 TTTTGGA
1 TTTTGGA
80236575 AAGAAGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 17 0.63
23 1 0.04
24 9 0.33
ACGTcount: A:0.09, C:0.00, G:0.26, T:0.64
Consensus pattern (22 bp):
TTTTGGAGGGGTTTTTTTTATT
Found at i:80236555 original size:21 final size:22
Alignment explanation
Indices: 80236529--80236574 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
80236519 TTGTTTTGGA
80236529 GGAGGT-TTTTTTTTATTTTTT
1 GGAGGTGTTTTTTTTATTTTTT
*
80236550 GGAGGTGTTTTTTTTGTTTTTT
1 GGAGGTGTTTTTTTTATTTTTT
80236572 GGA
1 GGA
80236575 AAGAAGGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.09, C:0.00, G:0.26, T:0.65
Consensus pattern (22 bp):
GGAGGTGTTTTTTTTATTTTTT
Found at i:80236914 original size:3 final size:3
Alignment explanation
Indices: 80236900--80236985 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
80236890 GAACTTCGTT
* *
80236900 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
80236944 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
80236986 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:80236938 original size:27 final size:27
Alignment explanation
Indices: 80236899--80236985 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
80236889 AGAACTTCGT
80236899 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
80236926 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
80236951 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
80236977 -TTATATTAT
1 TTTATATTAT
80236986 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:80236960 original size:21 final size:18
Alignment explanation
Indices: 80236900--80236989 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
80236890 GAACTTCGTT
*
80236900 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
80236920 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
80236938 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
80236959 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
80236977 TTA-TATTATATAT
1 TTATTATT-TATAT
80236990 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:80237234 original size:16 final size:16
Alignment explanation
Indices: 80237209--80237246 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
80237199 TATATTAGTG
*
80237209 TATATTTTTATATATA
1 TATATATTTATATATA
*
80237225 TATATATTTATATTTA
1 TATATATTTATATATA
80237241 TATATA
1 TATATA
80237247 GTATTGTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATATATTTATATATA
Found at i:80238515 original size:18 final size:19
Alignment explanation
Indices: 80238481--80238516 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80238471 TATAACTACC
80238481 AAAATAAAAATAAAAAGAG
1 AAAATAAAAATAAAAAGAG
*
80238500 AAAATAAAGA-AAAAAGA
1 AAAATAAAAATAAAAAGA
80238517 TGATGGTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.08
Consensus pattern (19 bp):
AAAATAAAAATAAAAAGAG
Found at i:80239520 original size:21 final size:21
Alignment explanation
Indices: 80239479--80239521 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
80239469 TCGATTTGTA
*
80239479 AAAATTATAAAATTCATGTTT
1 AAAATTATAAAATTAATGTTT
*
80239500 AAAATTATGAAA-TAATGGTTT
1 AAAATTATAAAATTAAT-GTTT
80239521 A
1 A
80239522 TTTAGGTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.49, C:0.02, G:0.09, T:0.40
Consensus pattern (21 bp):
AAAATTATAAAATTAATGTTT
Found at i:80239953 original size:38 final size:38
Alignment explanation
Indices: 80239902--80240056 Score: 213
Period size: 38 Copynumber: 4.1 Consensus size: 38
80239892 CGAATTATAT
** *
80239902 TGTTATTCAGGCTTCATGCCTAGCAGACTTAGTG-TCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCT-GG
*
80239940 TGTTATTCGGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
* * * *
80239978 TGTTATTCGGGCTTTGTGCCTAGAAGGCTTATTGCTGA
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
*
80240016 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCCGG
1 TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
80240054 TGT
1 TGT
80240057 ATTAAAAGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 103 0.99
39 1 0.01
ACGTcount: A:0.14, C:0.19, G:0.30, T:0.37
Consensus pattern (38 bp):
TGTTATTCAGGCTTTGTGCCTAGCAGGCTTAGTGCTGG
Found at i:80242366 original size:48 final size:48
Alignment explanation
Indices: 80242295--80242585 Score: 345
Period size: 48 Copynumber: 6.1 Consensus size: 48
80242285 CACACCCTAG
* *
80242295 GTGCCAATATCATGGCCTGAAGCCAAATCAATG-AAGCTCGAACCCAAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAA-CTCGAACCCGAA
*
80242343 GTGCCAATATCATGGCCTGAAGCCAAATCAATGTAACTC-ACACCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGA-ACCCGAA
* * *
80242391 GTGCTAATAGCATGG-CTCGAAGCCAAATCAATGTAACTCGCACCCAAA
1 GTGCTAATATCATGGCCT-GAAGCCAAATCAATGTAACTCGAACCCGAA
* * * * * *
80242439 GTGCTAATATCATGGCCTAAACCCAAATCGATGCAACTTGTACCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGAACCCGAA
** * * *
80242487 GTGCTAATATCAAAGCCCGAAGCCAAATCAAAGTAACTCGCACCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGAACCCGAA
** * *
80242535 GTGCTAATATCATGGCCCAAAGCCAAATCAATGTAACTCGCATCCGAA
1 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGAACCCGAA
80242583 GTG
1 GTG
80242586 AAGCCAAATC
Statistics
Matches: 210, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
47 3 0.01
48 203 0.97
49 4 0.02
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (48 bp):
GTGCTAATATCATGGCCTGAAGCCAAATCAATGTAACTCGAACCCGAA
Found at i:80242448 original size:96 final size:95
Alignment explanation
Indices: 80242283--80242585 Score: 383
Period size: 96 Copynumber: 3.2 Consensus size: 95
80242273 ACTCAGAAGT
* * * *
80242283 CTCACACCCTAGGTGCCAATATCATGGCCTGAAGCCAAATCAATG-AAGCTCGAACCCAAAGTGC
1 CTCACACCCGAAGTGCTAATATCATGGCC-GAAGCCAAATCAATGTAA-CTCGCACCCAAAGTGC
* *
80242347 CAATATCATGGCCTGAAGCCAAATCAATGTAA
64 TAATATCATGGCCTAAAGCCAAATCAATGTAA
*
80242379 CTCACACCCGAAGTGCTAATAGCATGGCTCGAAGCCAAATCAATGTAACTCGCACCCAAAGTGCT
1 CTCACACCCGAAGTGCTAATATCATGGC-CGAAGCCAAATCAATGTAACTCGCACCCAAAGTGCT
* * *
80242444 AATATCATGGCCTAAACCCAAATCGATGCAA
65 AATATCATGGCCTAAAGCCAAATCAATGTAA
*** * * * *
80242475 CTTGTACCCGAAGTGCTAATATCAAAGCCCGAAGCCAAATCAAAGTAACTCGCACCCGAAGTGCT
1 CTCACACCCGAAGTGCTAATATC-ATGGCCGAAGCCAAATCAATGTAACTCGCACCCAAAGTGCT
*
80242540 AATATCATGGCCCAAAGCCAAATCAATGTAA
65 AATATCATGGCCTAAAGCCAAATCAATGTAA
* *
80242571 CTCGCATCCGAAGTG
1 CTCACACCCGAAGTG
80242586 AAGCCAAATC
Statistics
Matches: 179, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
96 173 0.97
97 6 0.03
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.19
Consensus pattern (95 bp):
CTCACACCCGAAGTGCTAATATCATGGCCGAAGCCAAATCAATGTAACTCGCACCCAAAGTGCTA
ATATCATGGCCTAAAGCCAAATCAATGTAA
Found at i:80242549 original size:144 final size:144
Alignment explanation
Indices: 80242295--80242585 Score: 404
Period size: 144 Copynumber: 2.0 Consensus size: 144
80242285 CACACCCTAG
* * **
80242295 GTGCCAATATCATGGCCTGAAGCCAAATCAATGAAGCTCGAACCCAAAGTGCCAATATCATGGCC
1 GTGCCAATATCATGGCCTAAACCCAAATCAATGAAGCTCGAACCCAAAGTGCCAATATCAAAGCC
* * * *
80242360 TGAAGCCAAATCAATGTAACTCACACCCGAAGTGCTAATAGCATGGCTCGAAGCCAAATCAATGT
66 CGAAGCCAAATCAAAGTAACTCACACCCGAAGTGCTAATAGCATGGCCCAAAGCCAAATCAATGT
80242425 AACTCGCACCCAAA
131 AACTCGCACCCAAA
* * * * * *
80242439 GTGCTAATATCATGGCCTAAACCCAAATCGATGCAA-CTTGTACCCGAAGTGCTAATATCAAAGC
1 GTGCCAATATCATGGCCTAAACCCAAATCAATG-AAGCTCGAACCCAAAGTGCCAATATCAAAGC
* *
80242503 CCGAAGCCAAATCAAAGTAACTCGCACCCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAATG
65 CCGAAGCCAAATCAAAGTAACTCACACCCGAAGTGCTAATAGCATGGCCCAAAGCCAAATCAATG
* *
80242568 TAACTCGCATCCGAA
130 TAACTCGCACCCAAA
80242583 GTG
1 GTG
80242586 AAGCCAAATC
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
144 126 0.98
145 2 0.02
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (144 bp):
GTGCCAATATCATGGCCTAAACCCAAATCAATGAAGCTCGAACCCAAAGTGCCAATATCAAAGCC
CGAAGCCAAATCAAAGTAACTCACACCCGAAGTGCTAATAGCATGGCCCAAAGCCAAATCAATGT
AACTCGCACCCAAA
Found at i:80243181 original size:21 final size:20
Alignment explanation
Indices: 80243153--80243191 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
80243143 CAAAACTTGT
80243153 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
80243173 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
80243192 CAAAATACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:80245395 original size:48 final size:48
Alignment explanation
Indices: 80245327--80245559 Score: 173
Period size: 48 Copynumber: 4.9 Consensus size: 48
80245317 TGTCAAGGCC
* * * *
80245327 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAAATTGT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAAATAGT
* * * * ** *
80245375 GATGCCATCTTCCAAACATGGTCTTATACTGGCTCACATATCGA-GGT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAAATAGT
* ** * *
80245422 CGATGCCATG-TCCTATACATGGTCTTATGCTAGCTCTCGTATAAATACT
1 -GATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATATAAATAGT
* * * ** * **
80245471 GATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATTGAGACC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAAATAGT
* * * * *
80245519 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAT
80245560 CCTTAGTATC
Statistics
Matches: 146, Mismatches: 35, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
47 5 0.03
48 137 0.94
49 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAAATAGT
Found at i:80245455 original size:96 final size:96
Alignment explanation
Indices: 80245284--80245553 Score: 316
Period size: 96 Copynumber: 2.9 Consensus size: 96
80245274 TATCGGTGTC
* * * * *
80245284 GATGCCATGTTCCAAACATGGTCTTACA----C-CATATGTCAAGGCCGATGCCATGTCCCAGAC
1 GATGCCATCTTCCAAACATGGTCTTACACTGGCTCACATATCGAGACCGATGCCATGTCCCAGAC
**
80245344 ATGGTCTTACACTAGCTCTCACATAAATTGT
66 ATGGTCTTACACTAGCTCTCACATAAATACT
* ** * *
80245375 GATGCCATCTTCCAAACATGGTCTTATACTGGCTCACATATCGAGGTCGATGCCATGTCCTATAC
1 GATGCCATCTTCCAAACATGGTCTTACACTGGCTCACATATCGAGACCGATGCCATGTCCCAGAC
** **
80245440 ATGGTCTTATGCTAGCTCTCGTATAAATACT
66 ATGGTCTTACACTAGCTCTCACATAAATACT
* * * *
80245471 GATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATTGAGACCAATGCCATGTCCCAGAC
1 GATGCCATCTTCCAAACATGGTCTTACACTGGCTCACATATCGAGACCGATGCCATGTCCCAGAC
*
80245536 ATGGTCTTACACTGGCTC
66 ATGGTCTTACACTAGCTC
80245554 ACATATCCTT
Statistics
Matches: 148, Mismatches: 26, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
91 26 0.18
95 1 0.01
96 121 0.82
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (96 bp):
GATGCCATCTTCCAAACATGGTCTTACACTGGCTCACATATCGAGACCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCACATAAATACT
Found at i:80255240 original size:18 final size:17
Alignment explanation
Indices: 80255202--80255240 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
80255192 TTTTGAAAAG
80255202 AAAAACAAATGAATCTT
1 AAAAACAAATGAATCTT
*
80255219 AAAAACGAATGAATCTT
1 AAAAACAAATGAATCTT
80255236 AAAAA
1 AAAAA
80255241 TGTAATAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.62, C:0.10, G:0.08, T:0.21
Consensus pattern (17 bp):
AAAAACAAATGAATCTT
Found at i:80266136 original size:59 final size:59
Alignment explanation
Indices: 80266044--80266160 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
80266034 CTCAATAGTC
*
80266044 GCTTTCCTCCTCTCTTTTACTAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTAT
1 GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTAT
80266103 GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTA
1 GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTA
80266161 CAAATTCTCT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.14, C:0.37, G:0.12, T:0.38
Consensus pattern (59 bp):
GCTTTCCTCCTCTCTTTTACCAGCTCTTCTGCCTTGCATGCTCTCTCAACGAGCACTAT
Found at i:80268576 original size:46 final size:46
Alignment explanation
Indices: 80268525--80268650 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 46
80268515 TAGCCGATGT
*
80268525 ATGTCCCAAACATGTCTTACACTGGCTTACGTCTCAAGGCCGAAG-C
1 ATGTCCCAAACATGTCTTACACTGGCTT-CATCTCAAGGCCGAAGCC
* * * * *
80268571 ATGTCCCAAACATGTCTTATACTAGCACTCATCTCAATGCCGATGCC
1 ATGTCCCAAACATGTCTTACACTGGC-TTCATCTCAAGGCCGAAGCC
* *
80268618 ATGTCCCAGACATGATCTTACATTGGCTCTCAT
1 ATGTCCCAAACATG-TCTTACACTGGCT-TCAT
80268651 AATATGGCCG
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
46 37 0.57
47 15 0.23
48 13 0.20
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (46 bp):
ATGTCCCAAACATGTCTTACACTGGCTTCATCTCAAGGCCGAAGCC
Found at i:80269699 original size:16 final size:17
Alignment explanation
Indices: 80269678--80269711 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
80269668 GACCCTCAAT
80269678 TTTTAT-TCTCTAGCTA
1 TTTTATATCTCTAGCTA
*
80269694 TTTTATATCTTTAGCTA
1 TTTTATATCTCTAGCTA
80269711 T
1 T
80269712 CAATTTAGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.21, C:0.15, G:0.06, T:0.59
Consensus pattern (17 bp):
TTTTATATCTCTAGCTA
Found at i:80271170 original size:40 final size:40
Alignment explanation
Indices: 80271124--80271202 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
80271114 ACACACCATG
* * *
80271124 TGGGGATAAAATCGACCCA-CCTAGCCCTGCACACCAAGTA
1 TGGGGATAAAATCAACCCATCC-AACCCTACACACCAAGTA
*
80271164 TGGGGATAGAATCAACCCATCCAACCCTACACACCAAGT
1 TGGGGATAAAATCAACCCATCCAACCCTACACACCAAGT
80271203 GGTACCATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.34, C:0.33, G:0.18, T:0.15
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:80276542 original size:72 final size:72
Alignment explanation
Indices: 80276440--80276615 Score: 187
Period size: 72 Copynumber: 2.5 Consensus size: 72
80276430 ATGCTCGCAT
* * *
80276440 TTGAGCTACTCACGGGTCTGTACACAAAGTCAGCACCT-AGACCCCAAAGCATTATCATG-TAAT
1 TTGAGCTACTCACGGGTCTATACACAAAGTCAGCACCTGA-AACCCAAAGCATTAACATGAT-AT
80276503 GCCCGCTCA
64 GCCCGCTCA
* * * *
80276512 TTGAGCTACTCACGGGTTTATATATAAAGTCAGTACCTGAAACCCAAAGCATTAACATGATATGC
1 TTGAGCTACTCACGGGTCTATACACAAAGTCAGCACCTGAAACCCAAAGCATTAACATGATATGC
*
80276577 TCGCTCA
66 CCGCTCA
*** * * *
80276584 GCAAGTTACTCACTGGT-TTTACACAAAGTCAG
1 TTGAGCTACTCACGGGTCTATACACAAAGTCAG
80276616 TACTTGGACC
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
71 12 0.14
72 72 0.84
73 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (72 bp):
TTGAGCTACTCACGGGTCTATACACAAAGTCAGCACCTGAAACCCAAAGCATTAACATGATATGC
CCGCTCA
Found at i:80283454 original size:72 final size:72
Alignment explanation
Indices: 80283338--80283539 Score: 216
Period size: 72 Copynumber: 2.8 Consensus size: 72
80283328 CCATATATTT
* *
80283338 TGTAATGCCCG--CATTTGAGATACTCATGGGTCTATACACAAAGTTA-TCAC-CTGGACCCCAA
1 TGTAATGCCCGCTCA-TTGAGATACTCACGGGTTTATACACAAAGTTAGT-ACTC-GGACCCCAA
*
80283399 AGCATTATCA
63 AGCATTAACA
* * * *
80283409 TGTAATGCCCGCTCATTGAGCTACTCACGGGTTTATATACCAAGTTAGTACTCGGACCCCATAGC
1 TGTAATGCCCGCTCATTGAGATACTCACGGGTTTATACACAAAGTTAGTACTCGGACCCCAAAGC
80283474 ATTAACA
66 ATTAACA
* ** * * *
80283481 TG-ATATGCTCGCTCAGCGAGTTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCC
1 TGTA-ATGCCCGCTCATTGAGATACTCACGGGTTTATACACAAAGTTAGTACTCGGACCC
80283540 ATATTACATA
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
71 12 0.11
72 95 0.86
73 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (72 bp):
TGTAATGCCCGCTCATTGAGATACTCACGGGTTTATACACAAAGTTAGTACTCGGACCCCAAAGC
ATTAACA
Found at i:80285657 original size:13 final size:13
Alignment explanation
Indices: 80285639--80285663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80285629 CCTAGCACAC
80285639 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
80285652 GCCCGTGTCCCT
1 GCCCGTGTCCCT
80285664 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:80292345 original size:48 final size:50
Alignment explanation
Indices: 80292222--80292554 Score: 283
Period size: 48 Copynumber: 6.9 Consensus size: 50
80292212 GGGTAAAATA
*
80292222 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATC-AGCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAG-G
* * * *
80292272 TCGATGCCATGTTCCAAACATGGTCTTACACTAGC-CT-ATATGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
* * * * * *
80292320 CCGATACCATGTACCAGACATGGTCTTACACTATCTCTCACATA--AATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
* ** * *
80292368 CCGATGCTATGTTTCAAACATGGTCTTACACT-G-GCTCATATATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
** * * * **
80292416 TTGATGCCATGTCCCAGACATGGTCTTACACTAGATATCATATA--AATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
* * ** **
80292464 CCGATGCCATGTTCCAAACATGGTCTTACACT-G-GATCACGTATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
* * * *
80292512 CCAATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
80292555 CCCTAATATC
Statistics
Matches: 218, Mismatches: 54, Indels: 22
0.74 0.18 0.07
Matches are distributed among these distances:
46 13 0.06
47 1 0.00
48 152 0.70
49 8 0.04
50 44 0.20
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (50 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGG
Found at i:80292426 original size:96 final size:96
Alignment explanation
Indices: 80292222--80292554 Score: 418
Period size: 96 Copynumber: 3.4 Consensus size: 96
80292212 GGGTAAAATA
* *
80292222 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCA-GCGTCGATGCCATGTTC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA-AATGC--CGATGCCATGTTC
* *
80292286 CAAACATGGTCTTACACTAGC-CTATATGTCGAGG
63 CAAACATGGTCTTACACTGGCTC-ATATATCGAGG
* * * * * *
80292320 CCGATACCATGTACCAGACATGGTCTTACACTATCTCTCACATAAATGCCGATGCTATGTTTCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAA
80292385 ACATGGTCTTACACTGGCTCATATATCGAGG
66 ACATGGTCTTACACTGGCTCATATATCGAGG
** * * *
80292416 TTGATGCCATGTCCCAGACATGGTCTTACACTAGATATCATATAAATACCGATGCCATGTTCCAA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAA
* **
80292481 ACATGGTCTTACACTGGATCACGTATCGAGG
66 ACATGGTCTTACACTGGCTCATATATCGAGG
* * * *
80292512 CCAATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATAT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
80292555 CCCTAATATC
Statistics
Matches: 201, Mismatches: 32, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
96 158 0.79
97 2 0.01
98 41 0.20
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAA
ACATGGTCTTACACTGGCTCATATATCGAGG
Found at i:80292533 original size:144 final size:144
Alignment explanation
Indices: 80292225--80292555 Score: 369
Period size: 144 Copynumber: 2.3 Consensus size: 144
80292215 TAAAATACCG
* *
80292225 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGCGTCGATGCCATGTTCCAAA
1 ATGCCATGTCTCAGACATGGTCTTACACTGG--CTCATATATCAGCGTCGATGCCATGTCCCAAA
* * ** * * **
80292290 CATGGTCTTACACTAGCCTATATGTCGAGGCCGATACCATGTACCAGACATGGTCTTACACTATC
64 CATGGTCTTACACTAGCATATATATAAAGACCGATACCATGTACCAAACATGGTCTTACACTAGA
* * *
80292355 TCTCACATAAATGCCG
129 TCACACATAAAGGCCA
* * * * *
80292371 ATGCTATGTTTCAAACATGGTCTTACACTGGCTCATATATCGAG-GTTGATGCCATGTCCCAGAC
1 ATGCCATGTCTCAGACATGGTCTTACACTGGCTCATATATC-AGCGTCGATGCCATGTCCCAAAC
* * * *
80292435 ATGGTCTTACACTAG-ATATCATATAAATACCGATGCCATGTTCCAAACATGGTCTTACACTGGA
65 ATGGTCTTACACTAGCATAT-ATATAAAGACCGATACCATGTACCAAACATGGTCTTACACTAGA
** **
80292499 TCACGTATCGAGGCCA
129 TCACACATAAAGGCCA
*
80292515 ATGCCATGTCTCAGACATGGTCTTACACTGGCTCACATATC
1 ATGCCATGTCTCAGACATGGTCTTACACTGGCTCATATATC
80292556 CCTAATATCA
Statistics
Matches: 153, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
143 3 0.02
144 121 0.79
145 2 0.01
146 27 0.18
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (144 bp):
ATGCCATGTCTCAGACATGGTCTTACACTGGCTCATATATCAGCGTCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCATATATATAAAGACCGATACCATGTACCAAACATGGTCTTACACTAGATC
ACACATAAAGGCCA
Found at i:80300526 original size:27 final size:27
Alignment explanation
Indices: 80300424--80300527 Score: 73
Period size: 27 Copynumber: 3.9 Consensus size: 27
80300414 AATACTTTAG
* *
80300424 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA
* ** * * *
80300451 CTTGTAAAATTACCAAAGTACCCCCGA
1 TTTACAAAATTACTAAAATACCCTCGA
* * **** *
80300478 TTTATAGAATTACTGTTTTACCCTTGA
1 TTTACAAAATTACTAAAATACCCTCGA
80300505 TTTACAAAATTACTAAAATACCC
1 TTTACAAAATTACTAAAATACCC
80300528 CTGTAGGGTA
Statistics
Matches: 53, Mismatches: 24, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACTAAAATACCCTCGA
Found at i:80300542 original size:27 final size:27
Alignment explanation
Indices: 80300520--80300653 Score: 169
Period size: 27 Copynumber: 5.0 Consensus size: 27
80300510 AAAATTACTA
* *
80300520 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
80300547 AAATACCCTTGTAGGGTAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
80300574 AAATACCCTTGTAGGGTAGAAATAAGG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
80300601 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
80300628 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
80300654 ATTTTGCCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:80301155 original size:20 final size:20
Alignment explanation
Indices: 80301115--80301155 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
80301105 GTTGTGCCAT
*
80301115 TATTGTAGGCTTCGTATCGA
1 TATTGTAGGCTTCGTACCGA
* *
80301135 TATTGTGGGCTTCGTGCCGA
1 TATTGTAGGCTTCGTACCGA
80301155 T
1 T
80301156 TATAGACCCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTGTAGGCTTCGTACCGA
Done.