Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 278 of 427
Found at i:80301168 original size:96 final size:98
Alignment explanation
Indices: 80300959--80301177 Score: 325
Period size: 96 Copynumber: 2.3 Consensus size: 98
80300949 CATCCGAGAT
* *
80300959 GATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACTGAAGGCTGTGTGCCTTTATTA
1 GATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTA
* * * *
80301024 TGGGCTTTGTATTAATATTGTGGGCTTTGTACC
66 TAGGCTTCGTATCAATATTGTGGGCTTCGTACC
* *
80301057 GATTATAGACCCGTTATCGATGGCTGAGTGTCGATCATGTTACCGAAGG-T-TGTGCCATTATTG
1 GATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTA
* *
80301120 TAGGCTTCGTATCGATATTGTGGGCTTCGTGCC
66 TAGGCTTCGTATCAATATTGTGGGCTTCGTACC
*
80301153 GATTATAGACCCGTTATCAATGGCT
1 GATTATAGACCCGTTATCGATGGCT
80301178 TTGTGCCACG
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 62 0.56
97 1 0.01
98 47 0.43
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (98 bp):
GATTATAGACCCGTTATCGATGGCTGAGTGCCGATCATGTTACCGAAGGCTGTGTGCCATTATTA
TAGGCTTCGTATCAATATTGTGGGCTTCGTACC
Found at i:80301383 original size:6 final size:6
Alignment explanation
Indices: 80301374--80301458 Score: 59
Period size: 6 Copynumber: 13.8 Consensus size: 6
80301364 TTGCATTCAC
* *
80301374 ATTCTG ATTCTG ATTCTG -TCACTTG ATTCTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
80301423 -TCACCTG ATTCTG ATTCT- AGTTCTC ATTTTG ATTCT
1 AT--TCTG ATTCTG ATTCTG A-TTCTG ATTCTG ATTCT
80301459 AGTTTTGATA
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
5 3 0.05
6 50 0.81
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80301409 original size:31 final size:31
Alignment explanation
Indices: 80301374--80301440 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
80301364 TTGCATTCAC
* *
80301374 ATTCTGATTCTGATTCTGTCACTTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
80301405 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
80301436 ATTCT
1 ATTCT
80301441 AGTTCTCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATTCTG
Found at i:80303551 original size:27 final size:27
Alignment explanation
Indices: 80303521--80303588 Score: 102
Period size: 26 Copynumber: 2.6 Consensus size: 27
80303511 CGATTTACAA
* *
80303521 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
80303548 AATTACTGAAATA-CCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAG
*
80303574 AATTACCGAAATACC
1 AATTACTGAAATACC
80303589 AGAAATATCG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 24 0.65
27 13 0.35
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAAGGTAG
Found at i:80303619 original size:27 final size:27
Alignment explanation
Indices: 80303589--80303647 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
80303579 CCGAAATACC
*
80303589 AGAAATATCGAAATACCCCTGTAGGGT
1 AGAAATATCGAAATACCCCTATAGGGT
* * *
80303616 AGAACTATCGAGATACCCTTATAGGGT
1 AGAAATATCGAAATACCCCTATAGGGT
80303643 A-AAAT
1 AGAAAT
80303648 TACCATTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (27 bp):
AGAAATATCGAAATACCCCTATAGGGT
Found at i:80304131 original size:98 final size:98
Alignment explanation
Indices: 80303956--80304173 Score: 301
Period size: 98 Copynumber: 2.2 Consensus size: 98
80303946 TCGCTCGAGA
** * * * *
80303956 CGATTATAGACCCATTATCGATGGCTGAGTGCCAATCATGTTACCGAAAGCTGTGTGCCGTTATT
1 CGATTATAGACCTGTTATCGATAGCTGAGTACCAATCATGTTACCGAAAGCTATGTGCCATTATT
*
80304021 GTGGGCTCCGTATTGATATTATGGGCTTCGTGC
66 GTGGGCTCCGTATCGATATTATGGGCTTCGTGC
** *
80304054 CGATTATAGACCTGTTATCGATATTTGAGTACCGATCATGTTACCGAAAGCTATGTGCCATTATT
1 CGATTATAGACCTGTTATCGATAGCTGAGTACCAATCATGTTACCGAAAGCTATGTGCCATTATT
* * *
80304119 GTGGTCTTCGTATCGATATTGTGGGCTTCGTGC
66 GTGGGCTCCGTATCGATATTATGGGCTTCGTGC
* *
80304152 CAATTATAGACTTGTTATCGAT
1 CGATTATAGACCTGTTATCGAT
80304174 GGCTTTGTGC
Statistics
Matches: 105, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 105 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (98 bp):
CGATTATAGACCTGTTATCGATAGCTGAGTACCAATCATGTTACCGAAAGCTATGTGCCATTATT
GTGGGCTCCGTATCGATATTATGGGCTTCGTGC
Found at i:80304383 original size:6 final size:6
Alignment explanation
Indices: 80304374--80304467 Score: 52
Period size: 6 Copynumber: 15.3 Consensus size: 6
80304364 TTGCATTCAC
* * *
80304374 ATTCTG ATTCTA ATTCT- ATCACTTG ATTCTG ATTCTG ATTCTA ATTCT-
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
80304422 ATCACCTG ATTCTG ATTCT- AGTTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG A-TTCTG AT
80304468 AATGTTTCTT
Statistics
Matches: 69, Mismatches: 9, Indels: 20
0.70 0.09 0.20
Matches are distributed among these distances:
5 6 0.09
6 53 0.77
7 6 0.09
8 4 0.06
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:80304409 original size:31 final size:31
Alignment explanation
Indices: 80304374--80304440 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
80304364 TTGCATTCAC
*
80304374 ATTCTGATTCTAATTCTATCACTTGATTCTG
1 ATTCTGATTCTAATTCTATCACCTGATTCTG
80304405 ATTCTGATTCTAATTCTATCACCTGATTCTG
1 ATTCTGATTCTAATTCTATCACCTGATTCTG
80304436 ATTCT
1 ATTCT
80304441 AGTTCTCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.22, C:0.21, G:0.09, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTATCACCTGATTCTG
Found at i:80305511 original size:48 final size:48
Alignment explanation
Indices: 80305440--80305797 Score: 457
Period size: 48 Copynumber: 7.5 Consensus size: 48
80305430 CGCACCCTAG
* ** *
80305440 GTGCCAATATCATGGCCCGAAGCCAAATCAATG-AAGCTCGTACCCAAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA-CTCACACCCGAA
* * * * * *
80305488 GTGCCAATATCATGGCCCGAAGCCAAATTAATATAACTCGCACTCGAG
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCACACCCGAA
* * * *
80305536 GTGCTAATATCATGGCCTGAAGCCAAATCAATGTCAGTCACACCTGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCACACCCGAA
* ** *
80305584 GTGCTAATATCATGGCCCGAAGCCAAATTAATGTAACTTGCACCAGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCACACCCGAA
* * **
80305632 GTGCTAATATCGTGGCCTGAAGCCAAATCAATGTAACTCATTCCCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCACACCCGAA
* *
80305680 GTGCTAATATCATGGCCCGAAGCCAAATCAACGTAACTCACACCTGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCACACCCGAA
* * *
80305728 GTACTAATATCATGGCCCGAAGCCAAATCAATGTAACTTACACTCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCACACCCGAA
80305776 GTGCTAATATCATGGCCCGAAG
1 GTGCTAATATCATGGCCCGAAG
80305798 AGAAATCAGT
Statistics
Matches: 266, Mismatches: 43, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
48 264 0.99
49 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (48 bp):
GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCACACCCGAA
Found at i:80307950 original size:21 final size:21
Alignment explanation
Indices: 80307926--80307979 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
80307916 GTGATTGACA
*
80307926 CACACGCCTGTGTGGTTATTC
1 CACACGCCTGTGTGGATATTC
* * * *
80307947 CACATGCTTATTTGGATATTC
1 CACACGCCTGTGTGGATATTC
*
80307968 CACACGTCTGTG
1 CACACGCCTGTG
80307980 CTCTTAAGCC
Statistics
Matches: 23, Mismatches: 10, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (21 bp):
CACACGCCTGTGTGGATATTC
Found at i:80309023 original size:70 final size:70
Alignment explanation
Indices: 80308938--80309078 Score: 167
Period size: 70 Copynumber: 2.0 Consensus size: 70
80308928 TAATAAAGTT
* * * * *
80308938 TGTGCCTAGCACTAGTTGGATAAACCAACAAT-GTTTTGCTCCCAACACTAGTTGAATAACTGAC
1 TGTGCCCAACACTAGTTGAATAAACCAAC-ATGGTTTTGCGCCCAACACTAGTCGAATAACTGAC
*
80309002 GGATTG
65 GAATTG
* * * * *
80309008 TGTGCCCAACACTAGTTGAATGAATCGACATGGTTTTGCGCCCAGCGCTAGTCGAATAACTGACG
1 TGTGCCCAACACTAGTTGAATAAACCAACATGGTTTTGCGCCCAACACTAGTCGAATAACTGACG
80309073 AATTG
66 AATTG
80309078 T
1 T
80309079 AGCCCAGTGC
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
69 2 0.03
70 57 0.97
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (70 bp):
TGTGCCCAACACTAGTTGAATAAACCAACATGGTTTTGCGCCCAACACTAGTCGAATAACTGACG
AATTG
Found at i:80312889 original size:20 final size:20
Alignment explanation
Indices: 80312864--80312904 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80312854 TAAGAATTTG
80312864 GCAATTGAGATGGATCATCC
1 GCAATTGAGATGGATCATCC
80312884 GCAATTGAGATGGATCATCC
1 GCAATTGAGATGGATCATCC
80312904 G
1 G
80312905 ATAGAACGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (20 bp):
GCAATTGAGATGGATCATCC
Found at i:80315300 original size:30 final size:30
Alignment explanation
Indices: 80315266--80315325 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80315256 ATTTAATACG
80315266 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
80315296 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
80315326 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:80321332 original size:40 final size:40
Alignment explanation
Indices: 80321277--80321480 Score: 212
Period size: 40 Copynumber: 5.1 Consensus size: 40
80321267 TGAATGATAC
* * *
80321277 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* *
80321317 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGATTATAT
* * ** *
80321357 CCAGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * ** *
80321397 CCGGGTTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
* * ** *
80321437 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
80321477 CCGG
1 CCGG
80321481 CAAAATTCCG
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 138 0.98
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATTATAT
Found at i:80321479 original size:80 final size:80
Alignment explanation
Indices: 80321277--80321480 Score: 237
Period size: 80 Copynumber: 2.5 Consensus size: 80
80321267 TGAATGATAC
* *
80321277 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
80321342 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * * ** * * *
80321357 CCAGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
80321422 TGCAAGTTACCAAAT
66 TGCAAGTTACCAAAT
* * * *
80321437 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
80321481 CAAAATTCCG
Statistics
Matches: 99, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
80 99 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:80323654 original size:47 final size:45
Alignment explanation
Indices: 80323582--80323893 Score: 187
Period size: 47 Copynumber: 6.7 Consensus size: 45
80323572 GGTATAAAGC
*
80323582 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-C-TCAAGT
* * ** *
80323629 CGATGCCATGTTCCAGACATTGTCTTACACTAACTC-TCACATATCCGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCA-A-----GT
* * * * *
80323679 CGATACCATGTCCCAGACATGGTCTTACATTGGCACATTTTGC-AGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-TCT-CAAGT
* *
80323725 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCTC-AAGT
* * *
80323771 CGAAG-CATGTCCCAGACAT-GTCTTACACTAGCTCGTGTCTCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ATCTCAAGT
*
80323815 GCTGATGTCATGTCCCAGACATGGTCTTACACTGGCTC-TC-CTAATGT
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTC-AA-GT
*
80323862 GGCTGATG-TATGTCCCAGACAT-GTCTTACACT
1 --C-GATGCCATGTCCCAGACATGGTCTTACACT
80323894 AGCACACAAA
Statistics
Matches: 213, Mismatches: 29, Indels: 47
0.74 0.10 0.16
Matches are distributed among these distances:
44 17 0.08
45 25 0.12
46 57 0.27
47 59 0.28
48 21 0.10
50 31 0.15
51 1 0.00
52 1 0.00
53 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTCAAGT
Found at i:80323784 original size:46 final size:45
Alignment explanation
Indices: 80323579--80323851 Score: 196
Period size: 46 Copynumber: 5.8 Consensus size: 45
80323569 CGGGGTATAA
* *
80323579 AGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-CATCCATCA
1 AGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTACAT-C-TCG
* * * ** *
80323626 AGTCGATGCCATGTTCCAGACATTGTCTTACACTAACTCTCACATATCCG
1 AGCCGATG-CATGTCCCAGACATGGTCTTACACT--GGCT-ACATCT-CG
* * * * * *
80323676 TGTCGATACCATGTCCCAGACATGGTCTTACATTGGC-ACATTTTG
1 AGCCGAT-GCATGTCCCAGACATGGTCTTACACTGGCTACATCTCG
80323721 CAGCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG
1 -AGCCGATGCATGTCCCAGACATGGTCTTACACTGGC-TACATCTCG
* * * *
80323767 AGGCCGAAGCATGTCCCAGACAT-GTCTTACACTAGCT-CGTGTCTCA
1 A-GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTAC--ATCTCG
*
80323813 ATGCTGATGTCATGTCCCAGACATGGTCTTACACTGGCT
1 A-GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCT
80323852 CTCCTAATGT
Statistics
Matches: 181, Mismatches: 31, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
44 13 0.07
45 17 0.09
46 58 0.32
47 44 0.24
48 14 0.08
49 3 0.02
50 29 0.16
51 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
AGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTACATCTCG
Found at i:80323842 original size:94 final size:92
Alignment explanation
Indices: 80323726--80323896 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
80323716 TTTTGCAGCC
*
80323726 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGAGGCCGAAGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGGCCGAAGCATGTCCCAGACA
80323789 TGTCTTACACTAGCTCGTGTCTCAATGCT
64 TGTCTTACACTAGCTCGTGTCTCAATGCT
* * * * *
80323818 GATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCCTAATGTGGCTGATGTATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACA
80323883 TGTCTTACACTAGC
64 TGTCTTACACTAGC
80323897 ACACAAATGA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 49 0.71
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGAGGCCGAAGCATGTCCCAGACATG
TCTTACACTAGCTCGTGTCTCAATGCT
Found at i:80326714 original size:40 final size:39
Alignment explanation
Indices: 80326657--80326841 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
80326647 ATTAAATGAT
* * *
80326657 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
80326697 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
80326737 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
80326777 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
80326817 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
80326842 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:80326793 original size:80 final size:80
Alignment explanation
Indices: 80326656--80326862 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
80326646 AATTAAATGA
* * ** * *
80326656 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
80326721 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
80326734 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
80326799 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
80326816 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
80326863 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:80326847 original size:40 final size:39
Alignment explanation
Indices: 80326655--80326862 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
80326645 CAATTAAATG
* * ** *
80326655 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
80326695 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
80326735 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
80326775 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
80326815 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
80326855 ATATCCGG
1 ATATCCGG
80326863 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:80334688 original size:40 final size:39
Alignment explanation
Indices: 80334631--80334836 Score: 232
Period size: 40 Copynumber: 5.2 Consensus size: 39
80334621 ATTAAATGAT
* * * *
80334631 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * * *
80334671 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTAA
*
80334711 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTAA
* **
80334751 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
* * *
80334791 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTAA
80334831 ATCCGG
1 ATCCGG
80334837 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
39 2 0.01
40 139 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTAA
Found at i:80334767 original size:80 final size:80
Alignment explanation
Indices: 80334630--80334836 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 80
80334620 AATTAAATGA
* * ** * *
80334630 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
80334695 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
80334708 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* *
80334773 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* * *
80334790 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
80334837 TTGTATTCCG
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 107 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:80338675 original size:20 final size:20
Alignment explanation
Indices: 80338650--80338695 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
80338640 CAGAAAATGA
80338650 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
80338670 TTTCT-GAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
80338689 TTTCTGG
1 TTTCTGG
80338696 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:80339154 original size:46 final size:46
Alignment explanation
Indices: 80339084--80339205 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
80339074 AATAATATTA
* * *
80339084 TCCAAATGCATAATTAGTAGTACACCACATGATAACAACAACACTG
1 TCCAAGTGCATAACTAGTATTACACCACATGATAACAACAACACTG
* * * *
80339130 TCCAAGTGCATAACTAATATTACACCACATGATTACAACAGCATTG
1 TCCAAGTGCATAACTAGTATTACACCACATGATAACAACAACACTG
80339176 TCCAAGTGCATAACTAGTATTACACCACAT
1 TCCAAGTGCATAACTAGTATTACACCACAT
80339206 TAAAAGTATC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.25
Consensus pattern (46 bp):
TCCAAGTGCATAACTAGTATTACACCACATGATAACAACAACACTG
Found at i:80341770 original size:15 final size:15
Alignment explanation
Indices: 80341750--80341789 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
80341740 TTCTCAAGCA
*
80341750 ATGACTAAAGTTACT
1 ATGACTAAAGTTACC
80341765 ATGACTAAAGTTACC
1 ATGACTAAAGTTACC
*
80341780 ATGATTAAAG
1 ATGACTAAAG
80341790 GGAATGGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (15 bp):
ATGACTAAAGTTACC
Found at i:80345468 original size:30 final size:31
Alignment explanation
Indices: 80345434--80345495 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
80345424 GGAGGTGGAA
**
80345434 AAAGTTGAAGAATTGAAG-AAAAAAAGGCTT
1 AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
80345464 AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
1 AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
80345495 A
1 A
80345496 CCTGGATGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.55, C:0.05, G:0.24, T:0.16
Consensus pattern (31 bp):
AAAGTTGAAGAACGGAAGAAAAAAAAGGCTT
Found at i:80346739 original size:40 final size:40
Alignment explanation
Indices: 80346695--80346823 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
80346685 TGCTGGAAAT
* * *
80346695 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
80346735 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
80346775 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
80346815 TATATCCGG
1 TATATCCGG
80346824 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:80353718 original size:40 final size:40
Alignment explanation
Indices: 80353652--80353818 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80353642 AAATTGAATG
* * *
80353652 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80353691 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
80353731 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80353771 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80353811 ATATCCGG
1 ATATCCGG
80353819 TTATATTCTG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80367425 original size:72 final size:72
Alignment explanation
Indices: 80367339--80367522 Score: 246
Period size: 72 Copynumber: 2.6 Consensus size: 72
80367329 AATGTGGGTT
* *
80367339 CGGGTACTGACTTTGTGTATAAACCCGTGAGTAACTCACTGAGCGAGCA-TATCAT-ATTAATGC
1 CGGGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCATTA-CATGA-TAATGC
80367402 TTTGAGGTC
64 TTTGAGGTC
* *
80367411 CGGGTACTGACTTTGTGTATAAACCCTTGAGTAGCTCAATGAGCGGGCATTACATGATAATGCTT
1 CGGGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCATTACATGATAATGCTT
*
80367476 TGGGGTC
66 TGAGGTC
* * * * *
80367483 CGAGTGCTGACTTTCTGTACAGACCCGTGAGTAGCTCAAT
1 CGGGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAAT
80367523 TGTGGGCATT
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
72 96 0.97
73 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (72 bp):
CGGGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCATTACATGATAATGCTT
TGAGGTC
Found at i:80374039 original size:26 final size:26
Alignment explanation
Indices: 80374003--80374055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
80373993 TTATAACCTT
*
80374003 AAAATTGTTAGTACAAATCTCCGGTG
1 AAAACTGTTAGTACAAATCTCCGGTG
*
80374029 AAAACTGTTAGTACAAATCTCTGGTG
1 AAAACTGTTAGTACAAATCTCCGGTG
80374055 A
1 A
80374056 GGAAAATCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (26 bp):
AAAACTGTTAGTACAAATCTCCGGTG
Found at i:80376027 original size:30 final size:30
Alignment explanation
Indices: 80375993--80376053 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80375983 TTCCCGAGCC
* *
80375993 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * *
80376023 TAGGGGAAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
80376053 T
1 T
80376054 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:80376869 original size:64 final size:64
Alignment explanation
Indices: 80376788--80376971 Score: 219
Period size: 67 Copynumber: 2.8 Consensus size: 64
80376778 AGACATTATG
* * *
80376788 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
80376852 ATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
80376917 AA
63 AA
* * * *
80376919 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
80376972 CAAACTATAT
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 23 0.23
67 32 0.32
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:80380041 original size:12 final size:12
Alignment explanation
Indices: 80380026--80380054 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
80380016 ATATATTTAA
80380026 AAATATTAAAAT
1 AAATATTAAAAT
80380038 AAATATTAAAAT
1 AAATATTAAAAT
80380050 AAATA
1 AAATA
80380055 AAAATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATATTAAAAT
Found at i:80380041 original size:24 final size:25
Alignment explanation
Indices: 80379983--80380043 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
80379973 CTTATTTCAT
* *
80379983 TAAATAAAAAAATTTAAAAATATAA
1 TAAATAAATATATTTAAAAATATAA
*
80380008 TAAATCAAATATATTTAAAAATATTA
1 TAAAT-AAATATATTTAAAAATATAA
80380034 -AAATAAATAT
1 TAAATAAATAT
80380044 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 9 0.28
26 17 0.53
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAATAAATATATTTAAAAATATAA
Found at i:80380063 original size:21 final size:20
Alignment explanation
Indices: 80379983--80380069 Score: 61
Period size: 21 Copynumber: 4.0 Consensus size: 20
80379973 CTTATTTCAT
80379983 TAAATAAAAAAAT-TTAAAAA
1 TAAATAAAAAAATATT-AAAA
80380003 TATAATAAATCAAATATATTTAAAA
1 TA-AATAAA--AAA-ATA-TTAAAA
*
80380028 -ATATTAAAATAAATATTAAAA
1 TA-AATAAAA-AAATATTAAAA
*
80380049 TAAATAAAAATAATACTAAAA
1 TAAATAAAAA-AATATTAAAA
80380070 CAATTTTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
20 3 0.05
21 27 0.49
22 5 0.09
23 5 0.09
24 9 0.16
25 4 0.07
26 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAATAAAAAAATATTAAAA
Found at i:80380149 original size:15 final size:16
Alignment explanation
Indices: 80380119--80380159 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
80380109 AAATAGTTAT
80380119 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
80380136 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
80380151 A--AAAAATTA
1 ATTAAAAATTA
80380160 TATATTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 2 0.09
15 8 0.35
17 8 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:80382874 original size:15 final size:15
Alignment explanation
Indices: 80382854--80382882 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80382844 ATTCCACGTT
80382854 TAAATGAAATGCATG
1 TAAATGAAATGCATG
80382869 TAAATGAAATGCAT
1 TAAATGAAATGCAT
80382883 CTATTGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (15 bp):
TAAATGAAATGCATG
Found at i:80384042 original size:2 final size:2
Alignment explanation
Indices: 80384035--80384063 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80384025 GAGACTAGTC
80384035 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80384064 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80386098 original size:30 final size:30
Alignment explanation
Indices: 80386064--80386124 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80386054 TCCTTAACTC
80386064 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80386094 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80386124 A
1 A
80386125 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80391339 original size:26 final size:26
Alignment explanation
Indices: 80391308--80391389 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
80391298 AGAAATGCCC
*
80391308 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
80391334 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
80391360 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
80391386 ATCA
1 ATCA
80391390 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:80392836 original size:21 final size:20
Alignment explanation
Indices: 80392807--80392845 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
80392797 CTTGAGAGTA
*
80392807 TTGTCACACCGCAAGTTTTTC
1 TTGTAACACC-CAAGTTTTTC
*
80392828 TTGTAACACCCCAGTTTT
1 TTGTAACACCCAAGTTTT
80392846 GGCGAGTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.21, C:0.28, G:0.13, T:0.38
Consensus pattern (20 bp):
TTGTAACACCCAAGTTTTTC
Found at i:80394376 original size:43 final size:43
Alignment explanation
Indices: 80394315--80394512 Score: 369
Period size: 43 Copynumber: 4.6 Consensus size: 43
80394305 CTGGCATTAC
80394315 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
80394358 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
80394401 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
80394444 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80394487 GCCTGCTAGGCACGAAAGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
80394513 TAATACCAGC
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 150 1.00
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.10
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:80394612 original size:38 final size:38
Alignment explanation
Indices: 80394510--80394605 Score: 131
Period size: 38 Copynumber: 2.5 Consensus size: 38
80394500 GAAAGCCCGA
* * *
80394510 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCTG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTATACCTG
80394548 ATATAATACCAGCACGAAGCCTGCGGGATTTA-ACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTATACCT-G
**
80394586 ATATTTTACCAGCACGAAGC
1 ATATAATACCAGCACGAAGC
80394606 TCGCGGGTCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
37 3 0.06
38 49 0.94
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTATACCTG
Found at i:80395599 original size:2 final size:2
Alignment explanation
Indices: 80395587--80395617 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
80395577 CACTTTCAAA
80395587 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80395618 TCAAATTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80399751 original size:43 final size:43
Alignment explanation
Indices: 80399693--80399932 Score: 392
Period size: 43 Copynumber: 5.6 Consensus size: 43
80399683 CTGGCATTAC
* * *
80399693 GCCTGTTAGGTACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80399736 GCCTGCTAGGCACGAA-GCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80399778 GCCAGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
80399821 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80399864 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
80399907 GCCTGCTAGGCACGAAAGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
80399933 TAATACCAGC
Statistics
Matches: 183, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
42 39 0.21
43 144 0.79
ACGTcount: A:0.31, C:0.32, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:80399973 original size:38 final size:38
Alignment explanation
Indices: 80399925--80400048 Score: 131
Period size: 38 Copynumber: 3.2 Consensus size: 38
80399915 GGCACGAAAG
* * * *
80399925 CCCGAATATAATACCAGCACTAGGCCTGCAGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
*
80399963 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
** * * * *
80400001 CCCGGATATTTTACTAGCACGAAGCTTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCAGG-ATTTAA
80400040 GCCCGGATA
1 -CCCGGATA
80400049 CACATCAAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 61 0.82
39 5 0.07
40 8 0.11
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
Found at i:80399976 original size:129 final size:128
Alignment explanation
Indices: 80399699--80399944 Score: 388
Period size: 128 Copynumber: 1.9 Consensus size: 128
80399689 TTACGCCTGT
* *
80399699 TAGGTACGAAGGCCCGAATACACATCACCGGCATGAAGCCTGCTAGGCACGAAGCCCGAATACAC
1 TAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGCCCGAATACAC
* * *
80399764 ATCACCGGTACGAAGCCAGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTAC
66 ATCACCGGCACGAAGCCAGCTAGGCACGAAAGCCCGAATACACATCACCAGCACGAAGCCTAC
*
80399827 TAGGCACGAAGGCCCGAATACACATCACCGGTACGAAGCCTGCTAGGCACGAAGGCCCGAATACA
1 TAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAA-GCCCGAATACA
* * *
80399892 CATCACTGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATATA-AT-ACCAGCAC
65 CATCACCGGCACGAAGCCAGCTAGGCACGAAAGCCCGAATACACATCACCAGCAC
80399945 TAGGCCTGCA
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
127 7 0.06
128 52 0.48
129 49 0.45
ACGTcount: A:0.33, C:0.32, G:0.24, T:0.11
Consensus pattern (128 bp):
TAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGCCCGAATACAC
ATCACCGGCACGAAGCCAGCTAGGCACGAAAGCCCGAATACACATCACCAGCACGAAGCCTAC
Found at i:80400843 original size:20 final size:20
Alignment explanation
Indices: 80400818--80400856 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
80400808 ATGATGGGGA
80400818 TCAAGAATATC-AAGTTGGAT
1 TCAAGAA-ATCGAAGTTGGAT
80400838 TCAAGAAATCGAAGTTGGA
1 TCAAGAAATCGAAGTTGGA
80400857 GGAGAGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (20 bp):
TCAAGAAATCGAAGTTGGAT
Found at i:80402837 original size:46 final size:46
Alignment explanation
Indices: 80402770--80403103 Score: 501
Period size: 46 Copynumber: 7.3 Consensus size: 46
80402760 TGAAATGTGT
* * *
80402770 GATACCATGGTAGCCTAATATGAAATGTGTAAGACGATGGTTGAAA
1 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
80402816 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
1 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
80402862 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
1 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
80402908 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
1 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
* *
80402954 GATACCATGGTAACCTGATATGAAATGTGTAAGACCATGGTTGAAA
1 GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
* * *
80403000 GATACCATGGCAACGTGATATGAAATG-GACAAGACCATGGTTGAAA
1 GATACCATGGCAGCCTGATATGAAATGTG-TAAGACCATGGTTGAAA
* * * * *
80403046 GATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAA
1 GATACCATGGCAGCCTGATATG-AAATGTGTAAGACCATGGTTGAAA
* *
80403092 GACACTATGGCA
1 GATACCATGGCA
80403104 TCATGTCAAA
Statistics
Matches: 271, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.01
46 268 0.99
47 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
GATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAAA
Found at i:80406720 original size:54 final size:53
Alignment explanation
Indices: 80406644--80406829 Score: 207
Period size: 54 Copynumber: 3.5 Consensus size: 53
80406634 CTTTGTAGAT
* * * *
80406644 AAACATGAAAAAAAAGCCTTTGTGGAAAATCATGAAAGAAAAGCTTTTGTTGCG
1 AAACATGAAAGAAAAGCTTTTGTGG-AAATCATGAAAGAAAAGCCTTTGTTGTG
* * *
80406698 AAACATGAAAGAAAAGTTTTTGTGGCAAATCTTGAAAGAAAAGCCTTTGTGGTG
1 AAACATGAAAGAAAAGCTTTTGTGG-AAATCATGAAAGAAAAGCCTTTGTTGTG
* * *
80406752 AAATATGAAAGGAAAGCTTTATG-GTGAAAT-ATGAAAGAAAAACCTTTG-TGATG
1 AAACATGAAAGAAAAGCTTT-TGTG-GAAATCATGAAAGAAAAGCCTTTGTTG-TG
*
80406805 AAACATGAAAGAAAAACTTTTGTGG
1 AAACATGAAAGAAAAGCTTTTGTGG
80406830 CGAAATATGT
Statistics
Matches: 111, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
52 4 0.04
53 36 0.32
54 68 0.61
55 3 0.03
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.26
Consensus pattern (53 bp):
AAACATGAAAGAAAAGCTTTTGTGGAAATCATGAAAGAAAAGCCTTTGTTGTG
Found at i:80406827 original size:80 final size:79
Alignment explanation
Indices: 80406628--80406838 Score: 216
Period size: 80 Copynumber: 2.6 Consensus size: 79
80406618 TAAGAAATAA
*
80406628 AAAAACCTTTGTAGAT-AAACATGAAA-AAAAAGCCTTTGTGGAAAATCATGAAAGAAAAGCTTT
1 AAAAACCTTTGT-GATGAAACATGAAAGAAAAA-CCTTTGTGGGAAAT-ATGAAAGAAAAGCTTT
80406691 TGTTGCGAAACATGAAAG
63 TG-TGCGAAACATGAAAG
*** * * *
80406709 AAAAGTTTTTGTG--GCAAATCTTGAAAGAAAAGCCTTTGTGGTGAAATATGAAAGGAAAGCTTT
1 AAAAACCTTTGTGATG-AAA-CATGAAAGAAAAACCTTTGTGG-GAAATATGAAAGAAAAGCTTT
* *
80406772 ATG-GTGAAATATGAAAG
63 -TGTGCGAAACATGAAAG
*
80406789 AAAAACCTTTGTGATGAAACATGAAAGAAAAACTTTTGTGGCGAAATATG
1 AAAAACCTTTGTGATGAAACATGAAAGAAAAACCTTTGTGG-GAAATATG
80406839 TGTAACACCC
Statistics
Matches: 106, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
80 53 0.50
81 42 0.40
82 11 0.10
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (79 bp):
AAAAACCTTTGTGATGAAACATGAAAGAAAAACCTTTGTGGGAAATATGAAAGAAAAGCTTTTGT
GCGAAACATGAAAG
Found at i:80406834 original size:27 final size:27
Alignment explanation
Indices: 80406644--80406834 Score: 181
Period size: 27 Copynumber: 7.1 Consensus size: 27
80406634 CTTTGTAGAT
* *
80406644 AAACATGAAAAAAAAGCCTTTGTGG-A
1 AAACATGAAAGAAAAGCCTTTGTGGCG
* *
80406670 AAATCATGAAAGAAAAGCTTTTGTTGCG
1 AAA-CATGAAAGAAAAGCCTTTGTGGCG
**
80406698 AAACATGAAAGAAAAGTTTTTGTGGC-
1 AAACATGAAAGAAAAGCCTTTGTGGCG
* *
80406724 AAATCTTGAAAGAAAAGCCTTTGTGGTG
1 AAA-CATGAAAGAAAAGCCTTTGTGGCG
* * * *
80406752 AAATATGAAAGGAAAG-CTTTATGGTG
1 AAACATGAAAGAAAAGCCTTTGTGGCG
* * **
80406778 AAATATGAAAGAAAAACCTTTGTGATG
1 AAACATGAAAGAAAAGCCTTTGTGGCG
* *
80406805 AAACATGAAAGAAAAACTTTTGTGGCG
1 AAACATGAAAGAAAAGCCTTTGTGGCG
80406832 AAA
1 AAA
80406835 TATGTGTAAC
Statistics
Matches: 138, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
26 29 0.21
27 103 0.75
28 6 0.04
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.25
Consensus pattern (27 bp):
AAACATGAAAGAAAAGCCTTTGTGGCG
Found at i:80408348 original size:42 final size:42
Alignment explanation
Indices: 80408238--80408392 Score: 170
Period size: 42 Copynumber: 3.7 Consensus size: 42
80408228 TTTCATACCA
* * *
80408238 ATGCCATATCCCAGATATGGTCTTACATG-GGATCTCGT-TTCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATT-G
* * * *
80408280 ATGCCAATAGCCTAGCTATGGCCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
* * * *
80408323 ATGTCATATCCTAGATATGGTCTTACACGAAATCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
80408365 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
80408393 ATAGTCTTAG
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 63 0.66
43 29 0.31
44 3 0.03
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
Found at i:80418958 original size:42 final size:42
Alignment explanation
Indices: 80418831--80418980 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 42
80418821 GGCTGGTACA
** *
80418831 CCATATCCC-TAATATGGTCTTACATGGGATCTCATTTCGATG
1 CCATATCCCAT-ATATGGTCTTACATGAAATCTCATATCGATG
* * *
80418873 CCAATAACCCA-ACTATGGTCTTACACGAAGTCTCATATCGATG
1 CC-ATATCCCATA-TATGGTCTTACATGAAATCTCATATCGATG
* * *
80418916 CCATATCCCATATATAGTCTTACATGAAATCTAATATAGATG
1 CCATATCCCATATATGGTCTTACATGAAATCTCATATCGATG
* *
80418958 CCGTATCCCAGATAT-GTCTTACA
1 CCATATCCCATATATGGTCTTACA
80418981 CATAATCTTA
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
41 8 0.09
42 48 0.53
43 34 0.38
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (42 bp):
CCATATCCCATATATGGTCTTACATGAAATCTCATATCGATG
Found at i:80419640 original size:27 final size:27
Alignment explanation
Indices: 80419606--80419732 Score: 94
Period size: 27 Copynumber: 4.7 Consensus size: 27
80419596 TACAATATGA
*
80419606 AAAG-AAAGCCTTTGTGGAAAAACATG
1 AAAGAAAAGCCTTTGTGGCAAAACATG
** * *
80419632 AAAGAAAAGCCTTTGTATCGAATCATG
1 AAAGAAAAGCCTTTGTGGCAAAACATG
* ** * *
80419659 AAAGAAAAGCCCTTGTGGTGAAATATA
1 AAAGAAAAGCCTTTGTGGCAAAACATG
* * * *
80419686 AAAGAAAATCCCTTGTGGCAAACCTTG
1 AAAGAAAAGCCTTTGTGGCAAAACATG
* * *
80419713 CAAGGATAGCCTTTGTGGCA
1 AAAGAAAAGCCTTTGTGGCA
80419733 TACTCAGGAT
Statistics
Matches: 76, Mismatches: 24, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
26 4 0.05
27 72 0.95
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (27 bp):
AAAGAAAAGCCTTTGTGGCAAAACATG
Found at i:80423036 original size:27 final size:27
Alignment explanation
Indices: 80423006--80423097 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
80422996 ATTACCAAAG
* *
80423006 TACCCTTGATTTATAGAATCATTGTTT
1 TACCCTTGATTTACAGAATCACTGTTT
*
80423033 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAGAATCACTGTTT
* * * *
80423060 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTTGATTTACAGAATCACTGTTT
*
80423087 TACCCTCGATT
1 TACCCTTGATT
80423098 ATGAAATTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (27 bp):
TACCCTTGATTTACAGAATCACTGTTT
Found at i:80423222 original size:27 final size:27
Alignment explanation
Indices: 80423149--80423234 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
80423139 ATACCCCTAA
* *
80423149 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
*
80423177 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCCTTGG
80423205 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
80423232 TTT
1 TTT
80423235 GTAGATTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 23 0.47
28 7 0.14
29 19 0.39
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:80424232 original size:24 final size:25
Alignment explanation
Indices: 80424156--80424225 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
80424146 AGGAAGTGCT
* * *
80424156 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
80424181 AAAAGGGCTTTTCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
80424206 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
80424226 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:80426851 original size:27 final size:27
Alignment explanation
Indices: 80426794--80426884 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
80426784 ATTACCAAAG
* * **
80426794 TACCCTCGATTTA-TAAATCACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
80426820 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
80426847 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
80426874 TACCCTCGATT
1 TACCCTCGATT
80426885 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 12 0.22
27 42 0.78
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:80426946 original size:27 final size:27
Alignment explanation
Indices: 80426916--80427017 Score: 102
Period size: 27 Copynumber: 3.7 Consensus size: 27
80426906 TATAGGGCAG
*
80426916 AATTACCA-AAATACCCCTGATTTACAA
1 AATTA-CAGAAATACCCTTGATTTACAA
80426943 AATTACAGAAATACCCTTGACTTT-CTAAA
1 AATTACAGAAATACCCTTGA-TTTAC--AA
* * *
80426972 AATTATAGAAATACCATTGGTTTACAA
1 AATTACAGAAATACCCTTGATTTACAA
80426999 AATTACTA-AAATACCCTTG
1 AATTAC-AGAAATACCCTTG
80427018 GTTTGTAGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
26 2 0.03
27 34 0.54
28 7 0.11
29 20 0.32
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACAGAAATACCCTTGATTTACAA
Found at i:80427105 original size:27 final size:27
Alignment explanation
Indices: 80427062--80427135 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
80427052 AAATGATTAA
* *
80427062 AATACCCCTAATA-GGTAAAACGACTGT
1 AATACCCCT-GTAGGGTAAAACGACCGT
**
80427089 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAACGACCGT
*
80427116 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
80427136 TAACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAACGACCGT
Found at i:80427980 original size:25 final size:24
Alignment explanation
Indices: 80427942--80428011 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
80427932 AGGAAGTGCT
*
80427942 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
80427966 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
80427991 AAGAAGGGCTTTGCCCCAGTT
1 AA-AAGGGCTTTGCCCCAGTT
80428012 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 2 0.05
25 40 0.95
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:80428024 original size:24 final size:24
Alignment explanation
Indices: 80427941--80428024 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
80427931 GAGGAAGTGC
* *
80427941 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
80427966 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
80427990 CAAGAAGGGCTTTGCCCCAG-TTAT
1 TAA-AAGGGCTTTGCCCCAGTTTAT
80428014 TAAAAGAGGCT
1 TAAAAG-GGCT
80428025 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.06
24 12 0.23
25 37 0.71
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:80430265 original size:13 final size:13
Alignment explanation
Indices: 80430247--80430272 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80430237 AGGGTGAATT
80430247 TTTGAAAATTTTG
1 TTTGAAAATTTTG
80430260 TTTGAAAATTTTG
1 TTTGAAAATTTTG
80430273 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:80440280 original size:21 final size:21
Alignment explanation
Indices: 80440254--80440324 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
80440244 TGTGAAAAAG
80440254 GGCACACGGCTGTGTGACTGA
1 GGCACACGGCTGTGTGACTGA
* ** * *
80440275 GGCACACGCCCATTTGAAGTGA
1 GGCACACGGCTGTGTG-ACTGA
* * *
80440297 GGCACATGGTTGTGTGACTAA
1 GGCACACGGCTGTGTGACTGA
80440318 GGCACAC
1 GGCACAC
80440325 ACCCGTGTGG
Statistics
Matches: 35, Mismatches: 14, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
21 21 0.60
22 14 0.40
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.20
Consensus pattern (21 bp):
GGCACACGGCTGTGTGACTGA
Found at i:80441076 original size:3 final size:3
Alignment explanation
Indices: 80441068--80441094 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
80441058 AAAACATGAA
80441068 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
80441095 TAATTAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:80446049 original size:37 final size:37
Alignment explanation
Indices: 80445992--80446064 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
80445982 TTTTGAATTG
*
80445992 ATATCATATCTCTTTGTGGCTAAACAAAATAAAGTTT
1 ATATCATATCTCTTTATGGCTAAACAAAATAAAGTTT
*
80446029 ATATCATATCTTTTTATGGCTAAACAAAATAAAGTT
1 ATATCATATCTCTTTATGGCTAAACAAAATAAAGTT
80446065 ATCTGTTCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (37 bp):
ATATCATATCTCTTTATGGCTAAACAAAATAAAGTTT
Found at i:80448060 original size:9 final size:9
Alignment explanation
Indices: 80448046--80448081 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
80448036 AAAAAAATAA
80448046 ATTTAAAAT
1 ATTTAAAAT
80448055 ATTTAAAAT
1 ATTTAAAAT
*
80448064 ATTAAAAAT
1 ATTTAAAAT
*
80448073 ATATAAAAT
1 ATTTAAAAT
80448082 GCTAAATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
ATTTAAAAT
Found at i:80451353 original size:21 final size:23
Alignment explanation
Indices: 80451301--80451356 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
80451291 ATGTATAGAG
80451301 ATTAATTTTTAATAATAAAAATA
1 ATTAATTTTTAATAATAAAAATA
* *
80451324 GTTAAATTTTTAATAA-AAAATTA
1 ATT-AATTTTTAATAATAAAAATA
*
80451347 ATTATTTTTT
1 ATTAATTTTT
80451357 TATTTATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 6 0.21
23 10 0.36
24 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
ATTAATTTTTAATAATAAAAATA
Found at i:80451858 original size:7 final size:7
Alignment explanation
Indices: 80451835--80451871 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
80451825 ATAAATATGT
80451835 ATAAA-A
1 ATAAATA
80451841 ATAATATA
1 ATAA-ATA
80451849 ATAAATA
1 ATAAATA
80451856 ATAAATA
1 ATAAATA
80451863 ATAAA-A
1 ATAAATA
80451869 ATA
1 ATA
80451872 TTTCAAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 8 0.28
7 16 0.55
8 5 0.17
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
ATAAATA
Found at i:80454872 original size:31 final size:31
Alignment explanation
Indices: 80454831--80454894 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80454821 CCTTTTTATA
*
80454831 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
80454862 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
80454893 TT
1 TT
80454895 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:80455163 original size:23 final size:24
Alignment explanation
Indices: 80455088--80455229 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
80455078 GCTTTATCAT
*
80455088 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
80455113 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
80455137 ATAACTGGGGCATAAG-CCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
80455160 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
80455184 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80455207 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80455230 TCACTTCCTC
Statistics
Matches: 106, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
23 43 0.41
24 51 0.48
25 12 0.11
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80455168 original size:47 final size:47
Alignment explanation
Indices: 80455107--80455230 Score: 203
Period size: 47 Copynumber: 2.6 Consensus size: 47
80455097 GGCCTAGCCT
*
80455107 CTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
* * *
80455154 CTTTTGATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
80455201 CCTTTAATAACTGGGGCATAAGCCCTTTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTTTT
80455231 CACTTCCTCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
Found at i:80455301 original size:9 final size:9
Alignment explanation
Indices: 80455287--80455363 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
80455277 ATCTCGTGTG
80455287 CATATCATA
1 CATATCATA
*
80455296 CATATCATGTG
1 CATATCA--TA
80455307 CATATCATA
1 CATATCATA
* *
80455316 CATGTCATGTG
1 CATATCA--TA
80455327 CATATCATA
1 CATATCATA
*
80455336 CATATCATGTG
1 CATATCA--TA
80455347 CATATCATA
1 CATATCATA
80455356 CATATCAT
1 CATATCAT
80455364 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:80455306 original size:20 final size:20
Alignment explanation
Indices: 80455283--80455365 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
80455273 GAACATCTCG
80455283 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
80455303 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
80455323 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80455343 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80455363 TGT
1 TGT
80455366 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:80455312 original size:11 final size:11
Alignment explanation
Indices: 80455283--80455354 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
80455273 GAACATCTCG
80455283 TGTGCATATCA
1 TGTGCATATCA
*
80455294 --TACATATCA
1 TGTGCATATCA
80455303 TGTGCATATCA
1 TGTGCATATCA
* *
80455314 --TACATGTCA
1 TGTGCATATCA
80455323 TGTGCATATCA
1 TGTGCATATCA
*
80455334 --TACATATCA
1 TGTGCATATCA
80455343 TGTGCATATCA
1 TGTGCATATCA
80455354 T
1 T
80455355 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:80456672 original size:27 final size:27
Alignment explanation
Indices: 80456611--80456674 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
80456601 GGCATATTCG
*
80456611 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
80456638 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
*
80456665 TCTTTTTACC
1 TCATTTTACC
80456675 TAATAGAGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:80456845 original size:27 final size:27
Alignment explanation
Indices: 80456706--80456941 Score: 192
Period size: 27 Copynumber: 8.7 Consensus size: 27
80456696 TTCATCCTAC
* * *
80456706 AAGGGTGTTTTGGTAAATCTAC-AACT
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
80456732 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
80456759 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTTTACAAACT
* ** *
80456787 CAAGGGTATTTCT-GTAACTTTGTAAATT
1 -AAGGGTATTT-TGGTAATTTTACAAACT
* *
80456815 AGGGGTATTTTGGT-ATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
80456841 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
80456868 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
80456895 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
*
80456922 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTGGTAATTTT
80456942 GTAAATCGAG
Statistics
Matches: 166, Mismatches: 38, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
26 36 0.22
27 102 0.61
28 14 0.08
29 14 0.08
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:80456904 original size:54 final size:54
Alignment explanation
Indices: 80456817--80456955 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
80456807 TGTAAATTAG
*
80456817 GGGTATTTTGGT-ATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAA
* * *
80456870 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAA
* ** *
80456924 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATAGAGGGTA
80456956 AAACAGTAAT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 14 0.19
54 59 0.79
55 2 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:80456953 original size:27 final size:27
Alignment explanation
Indices: 80456732--80457009 Score: 143
Period size: 27 Copynumber: 10.3 Consensus size: 27
80456722 ATCTACAACT
* * *
80456732 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
80456759 AATGGTATTTCTA-TAATTTTTAGAAAGTC
1 AAGGGTATTT-TAGTAA-TTTTATAAA-TC
* * *
80456788 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TAGTAATTTTATAAATC
* * * *
80456815 AGGGGTATTTTGGT-ATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTATAAATC
* ** * * *
80456841 GAGGGTATTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTATAAATC
* *
80456868 AAGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTAGTAATTTTATAAATC
* * *
80456894 TAGGGGTATTTTGGTAATTTTACAAA-C
1 -AAGGGTATTTTAGTAATTTTATAAATC
*
80456921 TAAGGGTATTTTAGTAATTTTGTAAATC
1 -AAGGGTATTTTAGTAATTTTATAAATC
* **** * *
80456949 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*** *
80456976 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTATAAATC
*
80457003 GAGGGTA
1 AAGGGTA
80457010 AAATGGTAAT
Statistics
Matches: 205, Mismatches: 38, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
26 22 0.11
27 153 0.75
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTATAAATC
Found at i:80457010 original size:27 final size:27
Alignment explanation
Indices: 80456932--80457144 Score: 227
Period size: 27 Copynumber: 7.9 Consensus size: 27
80456922 AAGGGTATTT
*
80456932 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
80456959 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
80456986 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
80457013 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
80457040 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
80457067 -CGATAATTATGTAAATC-AGGGGTAAAA
1 TAG-TAATTCTGTAAATCGA-GGGTAAAA
* ** *
80457094 -CGATAATTAAGTAAATCGGGGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
*
80457121 T-GCTAATTCTGTAAATCGGGGGTA
1 TAG-TAATTCTGTAAATCGAGGGTA
80457145 CTTTGGTAAT
Statistics
Matches: 164, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 162 0.99
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:80457171 original size:27 final size:27
Alignment explanation
Indices: 80457150--80457239 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
80457140 GGGTACTTTG
*
80457150 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
80457177 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
80457204 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
80457231 GTAATTTTA
1 GTAATTTTA
80457240 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:80457191 original size:54 final size:54
Alignment explanation
Indices: 80457133--80457239 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
80457123 CTAATTCTGT
* * *
80457133 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
80457187 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
80457240 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:80457253 original size:27 final size:27
Alignment explanation
Indices: 80457150--80457254 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
80457140 GGGTACTTTG
* *
80457150 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
80457177 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
80457204 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
80457231 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
80457255 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:80459725 original size:16 final size:17
Alignment explanation
Indices: 80459704--80459735 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80459694 CAGCAAGGTT
80459704 AGGAAT-GATGAAATGG
1 AGGAATGGATGAAATGG
80459720 AGGAATGGATGAAATG
1 AGGAATGGATGAAATG
80459736 TGATTGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.44, C:0.00, G:0.38, T:0.19
Consensus pattern (17 bp):
AGGAATGGATGAAATGG
Found at i:80461643 original size:20 final size:20
Alignment explanation
Indices: 80461620--80461674 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
80461610 TTTTGCAATT
*
80461620 AGAGGAATCGAAGTGCAAAC
1 AGAGGAACCGAAGTGCAAAC
80461640 AGA-GATACCGAAGTGCAAAC
1 AGAGGA-ACCGAAGTGCAAAC
*
80461660 AGAGGCACCGAAGTG
1 AGAGGAACCGAAGTG
80461675 AAATCTTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.06
20 28 0.90
21 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.31, T:0.09
Consensus pattern (20 bp):
AGAGGAACCGAAGTGCAAAC
Found at i:80471416 original size:17 final size:18
Alignment explanation
Indices: 80471394--80471439 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
80471384 TCAGGAACAC
*
80471394 CTTGATGACTAAA-GGAG
1 CTTGATGACTAAATGAAG
80471411 CTTGATGACTAAATGAAG
1 CTTGATGACTAAATGAAG
80471429 CTTGATGACTA
1 CTTGATGACTA
80471440 GCTTCTGGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (18 bp):
CTTGATGACTAAATGAAG
Found at i:80474978 original size:18 final size:17
Alignment explanation
Indices: 80474950--80474984 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
80474940 ACATTGAAGA
80474950 GTTTTATTGAAAACCTT
1 GTTTTATTGAAAACCTT
80474967 GTTTTCATTGAAAACCTT
1 GTTTT-ATTGAAAACCTT
80474985 TCTTTGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (17 bp):
GTTTTATTGAAAACCTT
Found at i:80476268 original size:28 final size:28
Alignment explanation
Indices: 80476234--80476332 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
80476224 TAGCCCTTTT
* *
80476234 AGGCCCAATCTCATTCATATGACCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
80476262 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
80476290 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
80476318 AGGCCCAATCACATT
1 AGGCCCAATCACATT
80476333 TATAGTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:80476592 original size:16 final size:16
Alignment explanation
Indices: 80476555--80476585 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
80476545 CAAACTTCTG
80476555 GCTTTTCGGCATTTCA
1 GCTTTTCGGCATTTCA
80476571 GCTTTTCGGCATTTC
1 GCTTTTCGGCATTTC
80476586 GGGTTTTGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.26, G:0.19, T:0.45
Consensus pattern (16 bp):
GCTTTTCGGCATTTCA
Found at i:80476872 original size:21 final size:21
Alignment explanation
Indices: 80476843--80476882 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80476833 ACTAAACAAC
*
80476843 AAGTGACTCACAAATCATCTT
1 AAGTCACTCACAAATCATCTT
**
80476864 AAGTCACTCTTAAATCATC
1 AAGTCACTCACAAATCATC
80476883 CATGAAGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (21 bp):
AAGTCACTCACAAATCATCTT
Found at i:80492199 original size:2 final size:2
Alignment explanation
Indices: 80492192--80492228 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
80492182 CCTTTCTCAC
80492192 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80492229 CATCACCAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80493620 original size:17 final size:17
Alignment explanation
Indices: 80493598--80493630 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
80493588 TCAATGTAAG
80493598 AACCCTAAACCTTTAAA
1 AACCCTAAACCTTTAAA
80493615 AACCCTAAACCTTTAA
1 AACCCTAAACCTTTAA
80493631 CAATTTGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (17 bp):
AACCCTAAACCTTTAAA
Found at i:80496114 original size:40 final size:40
Alignment explanation
Indices: 80496059--80496280 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
80496049 TATTCGAATG
80496059 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
80496099 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
80496139 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
80496179 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
80496219 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
80496259 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80496281 TACTTGGGTT
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 154 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:80498536 original size:14 final size:15
Alignment explanation
Indices: 80498517--80498546 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
80498507 AAAATGAAAG
80498517 AAGGAGGA-GAAGAA
1 AAGGAGGAGGAAGAA
80498531 AAGGAGGAGGAAGAA
1 AAGGAGGAGGAAGAA
80498546 A
1 A
80498547 CTTTGTGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (15 bp):
AAGGAGGAGGAAGAA
Found at i:80502746 original size:16 final size:17
Alignment explanation
Indices: 80502715--80502748 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
80502705 CGGGGTTGGG
80502715 ACACGGGCGTGTGTGACC
1 ACACGGGCG-GTGTGACC
80502733 ACACGGGC-GTGTGACC
1 ACACGGGCGGTGTGACC
80502749 CCTGTTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.29, G:0.38, T:0.15
Consensus pattern (17 bp):
ACACGGGCGGTGTGACC
Found at i:80506801 original size:48 final size:48
Alignment explanation
Indices: 80506703--80506837 Score: 130
Period size: 48 Copynumber: 2.8 Consensus size: 48
80506693 CACCATGATT
* * * *
80506703 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTGGA
1 TATGAGAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGACATGGA
* *
80506751 TATGAGAGCCAGTGTAAGACCATGT-TCGAGACATTGCATCGACATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCT-GAGACATGGCATCGACATGGA
* * * * * *
80506799 TAT-ATGTGCCATTATAAGACCATATCTGGGATATGGCAT
1 TATGA-GAGCCAGTGTAAGACCATGTCTGAGACATGGCAT
80506838 TGGCCTTGGT
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
47 2 0.03
48 68 0.96
49 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGACATGGA
Found at i:80506925 original size:42 final size:42
Alignment explanation
Indices: 80506853--80507013 Score: 214
Period size: 42 Copynumber: 3.8 Consensus size: 42
80506843 TTGGTATGTA
* * * * *
80506853 ATTTCATGTAAGACCATATCTAGGATATGGCATTGATATGAG
1 ATTTCATATAAGACCATGTCTGGGACATGGCATCGATATGAG
* *
80506895 ATTTCATGTAAGATCATGTCTGGGACATGGCATCGATATGAG
1 ATTTCATATAAGACCATGTCTGGGACATGGCATCGATATGAG
**
80506937 ATTTTGTATAAGACCATGTCTGGGACATGGCATCGATATGAG
1 ATTTCATATAAGACCATGTCTGGGACATGGCATCGATATGAG
* **
80506979 GTTTTGTATAAGACCATGTCTGGGACATGGCATCG
1 ATTTCATATAAGACCATGTCTGGGACATGGCATCG
80507014 GCACCGACAT
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 109 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (42 bp):
ATTTCATATAAGACCATGTCTGGGACATGGCATCGATATGAG
Found at i:80507081 original size:90 final size:83
Alignment explanation
Indices: 80506861--80507099 Score: 237
Period size: 90 Copynumber: 2.8 Consensus size: 83
80506851 TAATTTCATG
* * *
80506861 TAAGACCATATCTAGGATATGGCATTGATATGAGATTTCATGTAAGATCATGTCTGGGACATGGC
1 TAAGACCATATCTAGGATATGGCATCGATATGAGA-CTCATGTAAGACCATGTCTGGGACATGGC
* * *
80506926 ATCGATATGAGATTTTGTA
65 ATCGACATGAGACTTCGTA
* * * * **
80506945 TAAGACCATGTCTGGGACATGGCATCGATATGAG-GTTTTGTATAAGACCATGTCTGGGACATGG
1 TAAGACCATATCTAGGATATGGCATCGATATGAGACTCATG--TAAGACCATGTCTGGGACATGG
80507009 CATCGGCACCGACATGAGACTTCGTA
64 CAT------CGACATGAGACTTCGTA
* * * *
80507035 TAAGACCATATTTAGGATATGGCATCGGTATGTAGACCCATGTAAGACCATGTCGGGGACATGGC
1 TAAGACCATATCTAGGATATGGCATCGATATG-AGACTCATGTAAGACCATGTCTGGGACATGGC
80507100 TTTGACATTT
Statistics
Matches: 124, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
82 3 0.02
84 54 0.44
90 63 0.51
91 2 0.02
92 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (83 bp):
TAAGACCATATCTAGGATATGGCATCGATATGAGACTCATGTAAGACCATGTCTGGGACATGGCA
TCGACATGAGACTTCGTA
Found at i:80526658 original size:40 final size:40
Alignment explanation
Indices: 80526531--80526660 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
80526521 ATGCTGGAAA
* *
80526531 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
80526571 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
80526611 TTCTATCCGGGCTAAGACCCGAAGGCATTCATGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
80526651 TTATATCCGG
1 TTATATCCGG
80526661 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:80528780 original size:48 final size:48
Alignment explanation
Indices: 80528725--80528823 Score: 162
Period size: 48 Copynumber: 2.1 Consensus size: 48
80528715 TTTTCCTAGG
* *
80528725 TAATTTAACCTAAAGGTATTTTCGTCATTTTACCACCTATGGTAAAAC
1 TAATTTAACCTAAAGGTATTTTCATCATTTTACAACCTATGGTAAAAC
* *
80528773 TAATTTAACCTAAGGGTATTTTCATTATTTTACAACCTATGGTAAAAC
1 TAATTTAACCTAAAGGTATTTTCATCATTTTACAACCTATGGTAAAAC
80528821 TAA
1 TAA
80528824 CCCGATTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (48 bp):
TAATTTAACCTAAAGGTATTTTCATCATTTTACAACCTATGGTAAAAC
Found at i:80533850 original size:16 final size:16
Alignment explanation
Indices: 80533829--80533860 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80533819 CGCCAAATCT
80533829 TGAGTGCAAAAACTAC
1 TGAGTGCAAAAACTAC
*
80533845 TGAGTGTAAAAACTAC
1 TGAGTGCAAAAACTAC
80533861 GGCAGCTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.22
Consensus pattern (16 bp):
TGAGTGCAAAAACTAC
Found at i:80538173 original size:25 final size:25
Alignment explanation
Indices: 80538145--80538192 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80538135 TTATACCATG
* * *
80538145 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
80538170 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
80538193 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:80538295 original size:20 final size:20
Alignment explanation
Indices: 80538235--80538295 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
80538225 ATAAATATGG
*
80538235 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
80538255 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
80538275 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
80538295 T
1 T
80538296 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:80538372 original size:24 final size:24
Alignment explanation
Indices: 80538345--80538487 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
80538335 GAGGAAGTGA
80538345 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
80538369 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
80538393 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
80538416 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
80538440 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
80538464 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80538488 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:80538438 original size:47 final size:47
Alignment explanation
Indices: 80538345--80538487 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
80538335 GAGGAAGTGA
80538345 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
80538393 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
80538440 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
80538488 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:80538461 original size:71 final size:72
Alignment explanation
Indices: 80538345--80538488 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
80538335 GAGGAAGTGA
*
80538345 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
80538408 CCAGTTAT
65 CCAGTTAT
** * *
80538416 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
80538481 CAGTTAT
66 CAGTTAT
80538488 A
1 A
80538489 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:80538714 original size:31 final size:31
Alignment explanation
Indices: 80538679--80538741 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
80538669 CGTTTACAGT
80538679 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
80538710 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
80538741 A
1 A
80538742 TTATGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:80540379 original size:40 final size:40
Alignment explanation
Indices: 80540334--80540461 Score: 220
Period size: 40 Copynumber: 3.2 Consensus size: 40
80540324 TATGTGCACA
80540334 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
80540374 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
80540414 GCATTCGTGCGAGTTATTATTACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
80540454 GCATTCGT
1 GCATTCGT
80540462 ACTGGTTGTT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:80540492 original size:80 final size:80
Alignment explanation
Indices: 80540334--80540492 Score: 219
Period size: 80 Copynumber: 2.0 Consensus size: 80
80540324 TATGTGCACA
* * *
80540334 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTACAACCG
* * *
80540399 GGCTAAGTCCTGAAG
66 AGCCAAATCCTGAAG
* * * *
80540414 GCATTCGTGCGAGTTATTATTACCGGGTTAAGTCCCGAAGGCATTCGTACTGGTTGTTACATCCG
1 GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTACAACCG
*
80540479 AGCCAAATTCTGAA
66 AGCCAAATCCTGAA
80540493 AGTATTTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (80 bp):
GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTACGGGTTATTACAACCG
AGCCAAATCCTGAAG
Found at i:80548129 original size:2 final size:2
Alignment explanation
Indices: 80548122--80548147 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80548112 TTTCGGCTAA
80548122 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80548148 TAGGTATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80548675 original size:40 final size:40
Alignment explanation
Indices: 80548630--80548804 Score: 260
Period size: 40 Copynumber: 4.4 Consensus size: 40
80548620 TATGTGCACA
*
80548630 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
* **
80548670 GCATTCGTGCGGGTTATTAAAACCAAGCTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
*
80548710 GCATTCGTGTGGGTTATTATAACCGGGCTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
* * * *
80548750 GCATTCGTACGAGTTATTATTACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
*
80548790 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
80548805 GTTACATCCG
Statistics
Matches: 119, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 119 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGCTAAGTCCCGAAG
Found at i:80548828 original size:80 final size:80
Alignment explanation
Indices: 80548630--80548828 Score: 202
Period size: 80 Copynumber: 2.5 Consensus size: 80
80548620 TATGTGCACA
* * * ** * * *
80548630 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTAAAACCA
1 GCATTCGTGTGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTACGAGTTATTAAAACCA
80548695 AGCTAAGTCCCGAAG
66 AGCTAAGTCCCGAAG
* * * * ** *
80548710 GCATTCGTGTGGGTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTACGAGTTATTATTACCG
1 GCATTCGTGTGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTACGAGTTATTAAAACCA
* *
80548775 GGTTAAGTCCCGAAG
66 AGCTAAGTCCCGAAG
* * *
80548790 GCATTCGTGCT-GGTTGTTACATCCGAGCCAAATTCCGAA
1 GCATTCGTG-TGGGTTATTACAACCGAGCCAAATCCCGAA
80548829 AGTATTTATG
Statistics
Matches: 102, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 101 0.99
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
GCATTCGTGTGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTACGAGTTATTAAAACCA
AGCTAAGTCCCGAAG
Found at i:80552115 original size:17 final size:16
Alignment explanation
Indices: 80552089--80552120 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
80552079 TGATATATCT
80552089 CTGACGAGCTTCCAAC
1 CTGACGAGCTTCCAAC
80552105 CTGATCGAGCTTCCAA
1 CTGA-CGAGCTTCCAA
80552121 TAATCTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.22
Consensus pattern (16 bp):
CTGACGAGCTTCCAAC
Found at i:80561909 original size:29 final size:29
Alignment explanation
Indices: 80561875--80562006 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
80561865 GATTTAAGCC
* *** * *
80561875 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
80561904 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
80561933 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80561962 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
80561991 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
80562007 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 95 1.00
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:80564094 original size:22 final size:22
Alignment explanation
Indices: 80564067--80564136 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
80564057 TAATCACTTT
80564067 AATATTAAATTAATATAATATA
1 AATATTAAATTAATATAATATA
* *
80564089 AATATTAGATTAAATTTAATATTA
1 AATATTAAATT-AATATAATA-TA
*
80564113 AATGTTATTAAATTAATAGAATAT
1 AA---TATTAAATTAATATAATAT
80564137 TTATCTACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
22 10 0.26
23 8 0.21
24 4 0.11
25 1 0.03
26 7 0.18
27 8 0.21
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
AATATTAAATTAATATAATATA
Found at i:80569589 original size:40 final size:39
Alignment explanation
Indices: 80569532--80569716 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
80569522 ATTAAATGAT
* * *
80569532 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
80569572 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
* **
80569612 ATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
80569652 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
80569692 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
80569717 CGTGCATGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 120 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:80569669 original size:80 final size:80
Alignment explanation
Indices: 80569531--80569737 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
80569521 AATTAAATGA
* * ** * *
80569531 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
80569596 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* * *
80569609 TAAATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
80569674 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
80569691 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
80569738 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:80569722 original size:40 final size:39
Alignment explanation
Indices: 80569530--80569737 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
80569520 CAATTAAATG
* * ** *
80569530 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
80569570 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
* *
80569610 AAATCTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
80569650 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
80569690 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
80569730 ATATCCGG
1 ATATCCGG
80569738 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
39 5 0.03
40 133 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Done.