Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 279 of 427
Found at i:80576964 original size:29 final size:31
Alignment explanation
Indices: 80576914--80576973 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 31
80576904 ACTTGAATGT
80576914 GTATTTATTTAATAGATGAAAT-T-GAGATA
1 GTATTTATTTAATAGATGAAATGTGGAGATA
* *
80576943 GTATTTATTTTATTAG-TTAAATGTGGAGATA
1 GTATTTA-TTTAATAGATGAAATGTGGAGATA
80576974 TTAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
29 12 0.46
30 8 0.31
31 6 0.23
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (31 bp):
GTATTTATTTAATAGATGAAATGTGGAGATA
Found at i:80578720 original size:28 final size:28
Alignment explanation
Indices: 80578680--80578752 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
80578670 GGCTATGTAC
* *
80578680 GGCACTTAGTGTGTGAGATATCGAGTGT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
*
80578708 GGCACTTAGTGTGCGAGATATTGAGTAT
1 GGCACTTAGTGTGCGAGATATCGAGTAT
* *
80578736 GACACTTAGTGTACGAG
1 GGCACTTAGTGTGCGAG
80578753 GCATTGAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATCGAGTAT
Found at i:80581219 original size:17 final size:17
Alignment explanation
Indices: 80581174--80581222 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
80581164 TATAAAGGAT
80581174 AAATAGATTGAAT-T-TG
1 AAAT-GATTGAATGTATG
*
80581190 -AATGA-TGATTGTATG
1 AAATGATTGAATGTATG
80581205 AAATGATTGAATGTATG
1 AAATGATTGAATGTATG
80581222 A
1 A
80581223 GAAAAGTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 4 0.15
14 3 0.11
15 5 0.19
16 5 0.19
17 10 0.37
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (17 bp):
AAATGATTGAATGTATG
Found at i:80584539 original size:49 final size:48
Alignment explanation
Indices: 80584482--80584574 Score: 132
Period size: 49 Copynumber: 1.9 Consensus size: 48
80584472 GCGTTAATAA
* * *
80584482 CATAGCTGGATTTTCATTTCCTTTGTTTTTTTCTCACTCATTTGGCTGC
1 CATAGCTGGATTATCATTTCCTTTG-TTTCTTCCCACTCATTTGGCTGC
**
80584531 CATAGCTGGATTATCATTTTTTTTGTTTCTTCCCACTCATTTGG
1 CATAGCTGGATTATCATTTCCTTTGTTTCTTCCCACTCATTTGG
80584575 TTAGGCCTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 17 0.44
49 22 0.56
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.51
Consensus pattern (48 bp):
CATAGCTGGATTATCATTTCCTTTGTTTCTTCCCACTCATTTGGCTGC
Found at i:80593499 original size:10 final size:10
Alignment explanation
Indices: 80593474--80593502 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
80593464 TTTGTGTGTT
80593474 CTTTATTTTA
1 CTTTATTTTA
80593484 -TTTATTTTA
1 CTTTATTTTA
80593493 CTTTATTTTA
1 CTTTATTTTA
80593503 ATTTTCACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (10 bp):
CTTTATTTTA
Found at i:80594805 original size:25 final size:25
Alignment explanation
Indices: 80594754--80594826 Score: 80
Period size: 24 Copynumber: 3.0 Consensus size: 25
80594744 AAAATATTAC
**
80594754 ATTAATATTTTTA-TTTT-TTTAAT
1 ATTAATATAATTATTTTTATTTAAT
*
80594777 ATTAATATGATTATTTTTATTTAAT
1 ATTAATATAATTATTTTTATTTAAT
* *
80594802 ATTAATATAAAT-TTTTTAATTAAT
1 ATTAATATAATTATTTTTATTTAAT
80594826 A
1 A
80594827 AGATTTTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
23 11 0.26
24 16 0.37
25 16 0.37
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (25 bp):
ATTAATATAATTATTTTTATTTAAT
Found at i:80596062 original size:33 final size:33
Alignment explanation
Indices: 80596014--80596080 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
80596004 AGATATTGCA
80596014 ATTAATCATAGAAATCATCAATCTAAAGAGTTG
1 ATTAATCATAGAAATCATCAATCTAAAGAGTTG
*
80596047 ATTAATCAT-GAAAATCATCAATCTAAAGGGTTG
1 ATTAATCATAG-AAATCATCAATCTAAAGAGTTG
80596080 A
1 A
80596081 AACATTGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (33 bp):
ATTAATCATAGAAATCATCAATCTAAAGAGTTG
Found at i:80603569 original size:7 final size:7
Alignment explanation
Indices: 80603557--80603600 Score: 88
Period size: 7 Copynumber: 6.3 Consensus size: 7
80603547 ATTACGATCC
80603557 CCCTTCA
1 CCCTTCA
80603564 CCCTTCA
1 CCCTTCA
80603571 CCCTTCA
1 CCCTTCA
80603578 CCCTTCA
1 CCCTTCA
80603585 CCCTTCA
1 CCCTTCA
80603592 CCCTTCA
1 CCCTTCA
80603599 CC
1 CC
80603601 TTACAACAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.14, C:0.59, G:0.00, T:0.27
Consensus pattern (7 bp):
CCCTTCA
Found at i:80606087 original size:19 final size:20
Alignment explanation
Indices: 80606054--80606092 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
80606044 TCTAAAAGGT
*
80606054 GATATATTGAAATATGTATG
1 GATATATTGAAATATATATG
80606074 GATATATT-AAATATATATG
1 GATATATTGAAATATATATG
80606093 AAAAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (20 bp):
GATATATTGAAATATATATG
Found at i:80607777 original size:18 final size:18
Alignment explanation
Indices: 80607756--80607795 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
80607746 AATATAAACT
80607756 AATGCGTGAGGGAAGTGA
1 AATGCGTGAGGGAAGTGA
80607774 AATGCGTGAGGGAAGTGA
1 AATGCGTGAGGGAAGTGA
80607792 AATG
1 AATG
80607796 GTCGAATACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.42, T:0.17
Consensus pattern (18 bp):
AATGCGTGAGGGAAGTGA
Found at i:80608851 original size:19 final size:21
Alignment explanation
Indices: 80608813--80608855 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
80608803 AATATTAATT
80608813 TAAAAAATGTCTAAATAATAA
1 TAAAAAATGTCTAAATAATAA
*
80608834 TAAAATATG-CTAAA-AATAA
1 TAAAAAATGTCTAAATAATAA
80608853 TAA
1 TAA
80608856 TACAAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 5 0.24
21 8 0.38
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.28
Consensus pattern (21 bp):
TAAAAAATGTCTAAATAATAA
Found at i:80609507 original size:12 final size:12
Alignment explanation
Indices: 80609492--80609522 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
80609482 TTTTTTCTTC
80609492 TTTTTTATTATA
1 TTTTTTATTATA
80609504 TTTTTTATTATA
1 TTTTTTATTATA
80609516 TTTTTTA
1 TTTTTTA
80609523 GTGAGTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTATTATA
Found at i:80609661 original size:64 final size:65
Alignment explanation
Indices: 80609549--80609672 Score: 207
Period size: 64 Copynumber: 1.9 Consensus size: 65
80609539 TATTTTACTA
*
80609549 GAGTAAGAATAATATATGTAAGTAAATTCGGAAAAAAGAGAGAGAAAAAA-AAAGAAATAAATAG
1 GAGTAAGAATAATATATGTAAGTAAATTCGGAAAAAAGAGAGAAAAAAAAGAAAGAAATAAATAG
*
80609613 GAGTAAGAATAATATATGTAAGTAAATTCGG-AAAAAGAGAGAAAAAAAAAGAAATAAATA
1 GAGTAAGAATAATATATGTAAGTAAATTCGGAAAAAAGAGAG-AAAAAAAAGAAAGAAATA
80609673 GACCTTGGTT
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
63 10 0.18
64 38 0.68
65 8 0.14
ACGTcount: A:0.61, C:0.02, G:0.19, T:0.18
Consensus pattern (65 bp):
GAGTAAGAATAATATATGTAAGTAAATTCGGAAAAAAGAGAGAAAAAAAAGAAAGAAATAAATAG
Found at i:80611047 original size:20 final size:20
Alignment explanation
Indices: 80611022--80611064 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
80611012 CTACAAAAAA
80611022 AAAAGGTATTTTAAAATTAC
1 AAAAGGTATTTTAAAATTAC
80611042 AAAAGGTATTTTAAAATTAC
1 AAAAGGTATTTTAAAATTAC
80611062 AAA
1 AAA
80611065 CTCTCACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (20 bp):
AAAAGGTATTTTAAAATTAC
Found at i:80612029 original size:32 final size:32
Alignment explanation
Indices: 80611992--80612056 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
80611982 GTTGTAGAGT
80611992 TTCTTACTTGACTACGAGATTCTACGACATTG
1 TTCTTACTTGACTACGAGATTCTACGACATTG
**
80612024 TTCTTACTTGACTGTGAGATTCTACGACATTG
1 TTCTTACTTGACTACGAGATTCTACGACATTG
80612056 T
1 T
80612057 CTTGATCCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (32 bp):
TTCTTACTTGACTACGAGATTCTACGACATTG
Found at i:80613170 original size:20 final size:21
Alignment explanation
Indices: 80613132--80613170 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
80613122 GACTACCCCG
* *
80613132 GTGGCCACATGGGCGTGTGTC
1 GTGGCCACATGGCCATGTGTC
80613153 GTGG-CACATGGCCATGTG
1 GTGGCCACATGGCCATGTG
80613171 GATTTGAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.13, C:0.23, G:0.41, T:0.23
Consensus pattern (21 bp):
GTGGCCACATGGCCATGTGTC
Found at i:80614198 original size:92 final size:93
Alignment explanation
Indices: 80614030--80614211 Score: 267
Period size: 92 Copynumber: 2.0 Consensus size: 93
80614020 GATGACATCA
* * * * *
80614030 TATCGGTATAGCAGATTACTGCATTGCACTGTACCGCATGTATGTTAGCTACGCTACGTACCATT
1 TATCGGTATAGCAAATTACCGCATTGCACCGTACCGCATGTACGTTAGCTACGCTACGTACCACT
*
80614095 AACTGAACTGGCAGTT-TTACTGCAACC
66 AACTGAACTGGCAGTTCGTACTGCAACC
* *
80614122 TATCGGTATAGCAAATTACCGTATTGCACCGTACCGCATGTACGTTAGCTACGCTACGTACTACT
1 TATCGGTATAGCAAATTACCGCATTGCACCGTACCGCATGTACGTTAGCTACGCTACGTACCACT
* *
80614187 AGCTGATCTGGCAGTTCGTACTGCA
66 AACTGAACTGGCAGTTCGTACTGCA
80614212 TGTCTGTACT
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
92 72 0.91
93 7 0.09
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (93 bp):
TATCGGTATAGCAAATTACCGCATTGCACCGTACCGCATGTACGTTAGCTACGCTACGTACCACT
AACTGAACTGGCAGTTCGTACTGCAACC
Found at i:80614645 original size:18 final size:18
Alignment explanation
Indices: 80614603--80614647 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
80614593 TGAGAATTAC
*
80614603 TGATACCGTGACTGAATG
1 TGATACTGTGACTGAATG
80614621 TGATACTGTGACTGAATG
1 TGATACTGTGACTGAATG
*
80614639 TGTTACTGT
1 TGATACTGT
80614648 TTGACTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (18 bp):
TGATACTGTGACTGAATG
Found at i:80616365 original size:2 final size:2
Alignment explanation
Indices: 80616358--80616392 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80616348 TATTTTAGAA
80616358 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
80616393 CCAATATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80620406 original size:48 final size:48
Alignment explanation
Indices: 80620334--80620576 Score: 219
Period size: 48 Copynumber: 5.1 Consensus size: 48
80620324 ACTCGAGAGT
* * * * **
80620334 CTCGCACCCTAAGTGCCAATATCATGGCTTGAAGCCAAATCAATGAAG
1 CTCGCACACAAAGTGTCGATATCATGGCCCGAAGCCAAATCAATGAAG
* *
80620382 TTCGCACACAAAGTGTCGATATCATGGCCCAAAGCCAAATCAATGTAA-
1 CTCGCACACAAAGTGTCGATATCATGGCCCGAAGCCAAATCAATG-AAG
* * * * * *
80620430 CTCGCACTCGAAGTGTCGATATAATGACCCGAAGCTAAATAAATGTAA-
1 CTCGCACACAAAGTGTCGATATCATGGCCCGAAGCCAAATCAATG-AAG
* ** *
80620478 CTCGCAC-CAGAAGTGCCGATATCATGGCATGAAGCCAAACCAAT-ATAG
1 CTCGCACACA-AAGTGTCGATATCATGGCCCGAAGCCAAATCAATGA-AG
*
80620526 CTCGCA-ACCGAAGTG-CTGATATCATGGCCCGAAGCCAAATCAATGAAG
1 CTCGCACA-CAAAGTGTC-GATATCATGGCCCGAAGCCAAATCAATGAAG
80620574 CTC
1 CTC
80620577 TTAATGACAT
Statistics
Matches: 158, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 150 0.95
49 4 0.03
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (48 bp):
CTCGCACACAAAGTGTCGATATCATGGCCCGAAGCCAAATCAATGAAG
Found at i:80623199 original size:20 final size:20
Alignment explanation
Indices: 80623166--80623203 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80623156 AATAATTGTG
*
80623166 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
80623186 CATGTGATGGTTAAATGT
1 CATGTGATGCTTAAATGT
80623204 GGTATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:80626474 original size:131 final size:132
Alignment explanation
Indices: 80626239--80626505 Score: 428
Period size: 131 Copynumber: 2.0 Consensus size: 132
80626229 GAAAGAGTTA
* * * *
80626239 AAAGCACAGTTGCAAGAACTAACGGATAAGGGTTTTGCAAGACCAAGCTTTTCGCCTTGGGGTGC
1 AAAGCACAATTGAAAGAACTAACGGATAAGGGTTTTCCAAGACCAAGCTTTTCGCCCTGGGGTGC
*
80626304 TCCCGTATTATTTGTAAAGAAGAAAGATGATTCGATGAGATTATGTATAGATTACCGCCAACTCA
66 TCCCGTATTATTTGTAAAGAAGAAAAATGATTCGATGAGATTATGTATAGATTACCGCCAACTCA
*
80626369 AT
131 AC
* *
80626371 AAAGCACAATTGAAAGAACTGACGGATAAGGG-TTTCCAAGACCAAGCTTTTTGCCCTGGGGTGC
1 AAAGCACAATTGAAAGAACTAACGGATAAGGGTTTTCCAAGACCAAGCTTTTCGCCCTGGGGTGC
* * *
80626435 TCCCGTATTATTTGTGAAGAAGAAAAATGGTTCGATGAGATTATGTATAGATTACTGCCAACTCA
66 TCCCGTATTATTTGTAAAGAAGAAAAATGATTCGATGAGATTATGTATAGATTACCGCCAACTCA
80626500 AC
131 AC
80626502 AAAG
1 AAAG
80626506 TAACTATTAA
Statistics
Matches: 124, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
131 95 0.77
132 29 0.23
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
AAAGCACAATTGAAAGAACTAACGGATAAGGGTTTTCCAAGACCAAGCTTTTCGCCCTGGGGTGC
TCCCGTATTATTTGTAAAGAAGAAAAATGATTCGATGAGATTATGTATAGATTACCGCCAACTCA
AC
Found at i:80628525 original size:25 final size:23
Alignment explanation
Indices: 80628496--80628560 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
80628486 AATAAAAAAC
*
80628496 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
80628521 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
80628542 -TAAAAACA-AAAAACAAATA
1 TTTAAAACATAAAAACAAATA
80628561 AAAAATAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 10 0.27
20 7 0.19
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:80628553 original size:19 final size:19
Alignment explanation
Indices: 80628524--80628565 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
80628514 AAATACATTT
80628524 AAAACATAAAAACAAATATA
1 AAAACATAAAAACAAATA-A
80628544 AAAACA-AAAAACAAATAA
1 AAAACATAAAAACAAATAA
80628562 AAAA
1 AAAA
80628566 TAAGACTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.23
19 11 0.50
20 6 0.27
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (19 bp):
AAAACATAAAAACAAATAA
Found at i:80638994 original size:16 final size:14
Alignment explanation
Indices: 80638973--80639016 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 14
80638963 CACCTGGTTG
80638973 TCTAAATTCATTTGAA
1 TCTAAATTCATTT--A
80638989 TCTAAATATTCATTTA
1 TCT-AA-ATTCATTTA
80639005 TCTAAATTCATT
1 TCTAAATTCATT
80639017 CTAAAACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.27
15 2 0.08
16 7 0.27
17 2 0.08
18 8 0.31
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (14 bp):
TCTAAATTCATTTA
Found at i:80639017 original size:18 final size:17
Alignment explanation
Indices: 80638978--80639011 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
80638968 GGTTGTCTAA
80638978 ATTCATTTGAATCTAAAT
1 ATTCATTT-AATCTAAAT
80638996 ATTCATTT-ATCTAAAT
1 ATTCATTTAATCTAAAT
80639012 TCATTCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (17 bp):
ATTCATTTAATCTAAAT
Found at i:80639041 original size:19 final size:19
Alignment explanation
Indices: 80639019--80639060 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
80639009 AATTCATTCT
*
80639019 AAAACTATAAAAATTATTA
1 AAAACTATAAAAAATATTA
*
80639038 AAAATTATAAAAAATATTA
1 AAAACTATAAAAAATATTA
80639057 AAAA
1 AAAA
80639061 ACATTAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAACTATAAAAAATATTA
Found at i:80639060 original size:9 final size:10
Alignment explanation
Indices: 80639026--80639060 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
80639016 TCTAAAACTA
80639026 TAAAAATTAT
1 TAAAAATTAT
80639036 TAAAAATTA-
1 TAAAAATTAT
*
80639045 TAAAAAATAT
1 TAAAAATTAT
80639055 TAAAAA
1 TAAAAA
80639061 ACATTAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:80644610 original size:126 final size:125
Alignment explanation
Indices: 80644380--80644992 Score: 660
Period size: 127 Copynumber: 4.8 Consensus size: 125
80644370 TTCTCAAATA
* * * * *
80644380 AGGAAATATTTTGTGTTTGGGAGTTCGAGG-GGTCGTGCCCAATCGTGTTGGGTTTCAATTTTTC
1 AGGAAATATTTCGTGTTTGGAAGTTTG-GGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCC
* * * ** **
80644444 GTTC-AGCTAAAATACAAAATATCCTTTGGAAATTTTGTCCATGTTTTTTTAAAAATTAAAACG
65 ATTCGA-CTAAAATACAGAATATCCTTTTGAAATTTCATCCACATTTTTTT-AAAA-TAAAACG
80644507 AGGAAATACTTT-GTGTTTGGAAG-TTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCC
1 AGGAAATA-TTTCGTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCC
* * * * ** *
80644570 ATTCGGCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATGTTTTTTTAAAAATTAAAATG
65 ATTCGACTAAAATACAGAATATCCTTTTGAAATTTCATCCACATTTTTTT-AAAA-TAAAACG
* * * * * * * *
80644633 AGGCAATATTTCTTATTTGGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCATTTTTTT
1 AGGAAATATTTCGTGTTT-GGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCA-ATTTTC
*
80644698 CATTCGACTAAAATATAGAATATCCTTTTTTTGAAATTTCATCCACATTTTTCTTAAAATAAAAC
64 CATTCGACTAAAATACAGAATATCC---TTTTGAAATTTCATCCACATTTTT-TTAAAATAAAAC
80644763 G
125 G
* * * * *
80644764 AGGCAATATTTCGTGCTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCTA
1 AGGAAATATTTCGTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCA
** * * *
80644829 TTCGACTAAAATATGGAGTATCATTTTTTGAAATTTCATCCACATGTTTTTAAAATAAAACG
66 TTCGACTAAAATACAGAATATC--CTTTTGAAATTTCATCCACATTTTTTTAAAATAAAACG
* * * *
80644891 A-GACAATATTTCGTGTTTGGAAGTTTGGGAAGTCATGCCCAATCGTGCTGGGCTTCAATCTTCC
1 AGGA-AATATTTCGTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCC
*
80644955 ATTCGACTAAAATACAAAATATCCTTTTGAAATTTCAT
65 ATTCGACTAAAATACAGAATATCCTTTTGAAATTTCAT
80644993 ACGTGTTTTC
Statistics
Matches: 421, Mismatches: 51, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
125 19 0.05
126 102 0.24
127 111 0.26
128 57 0.14
129 51 0.12
130 34 0.08
131 21 0.05
132 24 0.06
133 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.37
Consensus pattern (125 bp):
AGGAAATATTTCGTGTTTGGAAGTTTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCA
TTCGACTAAAATACAGAATATCCTTTTGAAATTTCATCCACATTTTTTTAAAATAAAACG
Found at i:80644900 original size:258 final size:253
Alignment explanation
Indices: 80644384--80645076 Score: 738
Period size: 258 Copynumber: 2.7 Consensus size: 253
80644374 CAAATAAGGA
* * * * * * *
80644384 AATATTTTGTGTTTGGGAGTTCGAGGGGTCGTGCCCAATCGTGTTGGGTTTCAATTTTTCGTTC-
1 AATATTTCGTATTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCAATTTTTCATTCG
* ** * *
80644448 AGCTAAAATACAAAATATCCTTTGGAAATTTTGTCCATGTTTTT-TTAAAAATTAAAACGAGGAA
66 A-CTAAAATACAAAATATCCTTTTGAAATTTCATCCACGTTTTTCTT-AAAA-TAAAACGAGGCA
*
80644512 ATACTTT-GTGTTTGGAAG-TTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCG
128 ATA-TTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCG
* * ** * * *
80644575 GCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATGTTTTTTTAAAAATTAAAATGAGGC
192 ACTAAAATACGGAATATCCTTTGGAAATTTCATCCACATGTTTTTAAAAATTAAAACGAGAC
* *
80644637 AATATTTCTTATTTGGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCATTTTTTTCATT
1 AATATTTCGTATTT-GGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCA-ATTTTTCATT
* * *
80644702 CGACTAAAATATAGAATATCCTTTTTTTGAAATTTCATCCACATTTTTCTTAAAATAAAACGAGG
64 CGACTAAAATACAAAATATCC---TTTTGAAATTTCATCCACGTTTTTCTTAAAATAAAACGAGG
* * *
80644767 CAATATTTCGTGCTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCTATTC
126 CAATATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTC
* * * *
80644832 GACTAAAATATGGAGTATCATTTTTTGAAATTTCATCCACATGTTTTT-AAAA-TAAAACGAGAC
191 GACTAAAATACGGAATATC--CTTTGGAAATTTCATCCACATGTTTTTAAAAATTAAAACGAGAC
* * * * * * *
80644895 AATATTTCGTGTTTGGAAGTTTGGGA-AGTCATGCCCAATCGTGCTGGGCTTCAATCTTCCATTC
1 AATATTTCGTATTTGGGAGTTTGAGAGA-TCGTGCCCAATCGTGCTGGGTTTCAATTTTTCATTC
* * * *
80644959 GACTAAAATACAAAATATCCTTTTGAAATTTCAT--ACGTGTTTTCTCAAATTAAAATGAGACAA
65 GACTAAAATACAAAATATCCTTTTGAAATTTCATCCACGT-TTTTCTTAAAATAAAACGAGGCAA
* * * * * ** * *
80645022 TGTTTCATATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTGGGTTTCTATTT
129 TATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTT
80645077 ACTGTTTGGG
Statistics
Matches: 368, Mismatches: 59, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
251 3 0.01
252 64 0.17
253 25 0.07
254 35 0.10
255 25 0.07
256 31 0.08
257 57 0.15
258 101 0.27
259 6 0.02
260 21 0.06
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (253 bp):
AATATTTCGTATTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCAATTTTTCATTCG
ACTAAAATACAAAATATCCTTTTGAAATTTCATCCACGTTTTTCTTAAAATAAAACGAGGCAATA
TTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCGACTA
AAATACGGAATATCCTTTGGAAATTTCATCCACATGTTTTTAAAAATTAAAACGAGAC
Found at i:80644911 original size:127 final size:126
Alignment explanation
Indices: 80644384--80645076 Score: 659
Period size: 127 Copynumber: 5.5 Consensus size: 126
80644374 CAAATAAGGA
* * * * * * *
80644384 AATATTTTGTGTTTGGGAGTTCGAGG-GGTCGTGCCCAATCGTGTTGGGTTTCAATTTTTCGTTC
1 AATATTTCGTGTTTGGAAGTTTG-GGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTC
* * ** ** *
80644448 -AGCTAAAATACAAAATATCCTTTGGAAATTTTGTCCATGTTTTTTTAAAAATTAAAACGAGGA-
65 GA-CTAAAATACAGAATATCCTTTTGAAATTTCATCCACATGTTTTTAAAAA-TAAAACGA-GAC
*
80644511 AATACTTT-GTGTTTGGAAG-TTGGGAGGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTC
1 AATA-TTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTC
* * * * ** * * *
80644574 GGCTAAAATACGGAATATCCTTTGGAAATTTCGTCCATGTTTTTTTAAAAATTAAAATGAGGC
65 GACTAAAATACAGAATATCCTTTTGAAATTTCATCCACATGTTTTTAAAAA-TAAAACGAGAC
* * * * * *
80644637 AATATTTCTTATTTGGGGAGTTTGAG-AGATCGTGCCCAATCGTGCTGGGTTTCATTTTTTTCAT
1 AATATTTCGTGTTT-GGAAGTTTGGGAAG-TCGTGCCCAATCGTGCTGGGTTTCA-ATTTTCCAT
* *
80644701 TCGACTAAAATATAGAATATCCTTTTTTTGAAATTTCATCCACAT-TTTTCTTAAAATAAAACGA
63 TCGACTAAAATACAGAATATCC---TTTTGAAATTTCATCCACATGTTTT-TAAAAATAAAACGA
*
80644765 GGC
124 GAC
* * *
80644768 AATATTTCGTGCTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCTATTCG
1 AATATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCG
** * *
80644833 ACTAAAATATGGAGTATCATTTTTTGAAATTTCATCCACATGTTTTT-AAAATAAAACGAGAC
66 ACTAAAATACAGAATATC--CTTTTGAAATTTCATCCACATGTTTTTAAAAATAAAACGAGAC
* * *
80644895 AATATTTCGTGTTTGGAAGTTTGGGAAGTCATGCCCAATCGTGCTGGGCTTCAATCTTCCATTCG
1 AATATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCG
* * * * *
80644960 ACTAAAATACAAAATATCCTTTTGAAATTTCAT--ACGTGTTTTCTCAAATTAAAATGAGAC
66 ACTAAAATACAGAATATCCTTTTGAAATTTCATCCACATGTTTT-TAAAAATAAAACGAGAC
* * * * * ** * *
80645020 AATGTTTCATATTTGGAAATTCGATAAATCGTGCCCAATCGTGCTGGGTTTCTATTT
1 AATATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTT
80645077 ACTGTTTGGG
Statistics
Matches: 483, Mismatches: 64, Indels: 40
0.82 0.11 0.07
Matches are distributed among these distances:
123 8 0.02
124 1 0.00
125 78 0.16
126 99 0.20
127 108 0.22
128 53 0.11
129 55 0.11
130 33 0.07
131 27 0.06
132 21 0.04
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (126 bp):
AATATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGTTTCAATTTTCCATTCG
ACTAAAATACAGAATATCCTTTTGAAATTTCATCCACATGTTTTTAAAAATAAAACGAGAC
Found at i:80646892 original size:10 final size:10
Alignment explanation
Indices: 80646877--80646904 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
80646867 GTGCATGTCG
80646877 GAAGGCAGGC
1 GAAGGCAGGC
80646887 GAAGGCAGGC
1 GAAGGCAGGC
80646897 GAAGGCAG
1 GAAGGCAG
80646905 ATTTATAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.50, T:0.00
Consensus pattern (10 bp):
GAAGGCAGGC
Found at i:80656314 original size:64 final size:64
Alignment explanation
Indices: 80656237--80656363 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
80656227 CATTCATAAT
*
80656237 ACATCTAGTTAGGAGCACTT-GATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCATC
1 ACATCTAGCTAGGAGCACTTGGATT-ATTTTGATCATAGCATCCTAATTATTTGACATAAGCATC
*
80656301 ACATCTAGCTAGGAGCACTTGGATTATTTTGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 ACATCTAGCTAGGAGCACTTGGATTATTTTGATCATAGCATCCTAATTATTTGACATAAGCAT
80656364 AGATACATGA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
64 56 0.93
65 4 0.07
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (64 bp):
ACATCTAGCTAGGAGCACTTGGATTATTTTGATCATAGCATCCTAATTATTTGACATAAGCATC
Found at i:80656561 original size:87 final size:88
Alignment explanation
Indices: 80656461--80656622 Score: 193
Period size: 88 Copynumber: 1.9 Consensus size: 88
80656451 TAGATCGAAG
* * * * ** * *
80656461 ATTACAAACCTTATCTCCCTGAAGCTGC-AGTGGAGCAGGT-TGAAGTGACAAGTCTTATCTTCT
1 ATTACAAACCTTATATCCATGAAGCAGCTA-TGGAGCAGATCAAAAATGACAAGTCTTATCTCCT
80656524 TGAAGTTACAGGAAGTAGACTAAA
65 TGAAGTTACAGGAAGTAGACTAAA
* * * *
80656548 ATTACAGATCTTATATCCATGTATCAGCTATGGAGCAGATCAAAAATGACAAGTCTTATCTCCTT
1 ATTACAAACCTTATATCCATGAAGCAGCTATGGAGCAGATCAAAAATGACAAGTCTTATCTCCTT
80656613 GAAGTTACAG
66 GAAGTTACAG
80656623 TGGCGTAGAC
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
87 30 0.49
88 31 0.51
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (88 bp):
ATTACAAACCTTATATCCATGAAGCAGCTATGGAGCAGATCAAAAATGACAAGTCTTATCTCCTT
GAAGTTACAGGAAGTAGACTAAA
Found at i:80656719 original size:134 final size:132
Alignment explanation
Indices: 80656470--80657076 Score: 583
Period size: 134 Copynumber: 4.6 Consensus size: 132
80656460 GATTACAAAC
* ** * * *
80656470 CTTATCTCCCTGAAGCTGCAGTGGAGCAGGTTGAAG-T-GACAAGTCTTATCTTCTTGAAGTTAC
1 CTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAAGATAG-CAAGTCTTATCTTCCTGAAGTTGC
* * * *
80656533 AGGAAGTAGACTAAAATTACAGATCTTATATCCATGTATCAGCTATGGAGCAGATCAAAAATGAC
64 AGGAAGCAGACTGAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGAC
80656598 AAGT
129 AAGT
* * * * *
80656602 CTTATCTCCTTGAAGTTACAGTGGCGTAGACTGAAGATAGCAAGTCTTATCTTCCTGAAGTTACA
1 CTTATCTCC-TGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAGTCTTATCTTCCTGAAGTTGCA
* * *
80656667 GGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGGCTATAGAGCAGATCAGAAATGGT
65 GGAAGCAGACTGAAA-TTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAAT-GA
*
80656732 GAA-T
128 CAAGT
* * * ** ** * *
80656736 CTTATCTCCATGTA-TCGGCTA-TGGAGCAGATTTTAGCCA-CTAGTCTTATCTTCTTGAAGTTG
1 CTTATCTCC-TGAAGT-TGC-AGTGGAGCAGACTAAAGATAGCAAGTCTTATCTTCCTGAAGTTG
* * *
80656798 CAGGAAGCAGACTAAAAATTTACAAATCTTATCTCCATGTATCGGCTATGGAGCAGATCTAAAAT
63 CAGGAAGCAGACT-GAAA-TTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAAT
*
80656863 GATAAGT
126 GACAAGT
* * *
80656870 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAGTAAGTCTTATCTTCCTAAAGTTGCA
1 CTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAGTCTTATCTTCCTGAAGTTGCA
* * *** **
80656935 GGAAGCAGATTG--A--A-AGATCTTATCTCCATGTATCGACTATGGAGCAGAT--TTTATTCCT
65 GGAAGCAGACTGAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGAC-
80656993 AAGT
129 AAGT
* * *
80656997 CTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGTAAGTCTTATCTCCCTGAAGTTGCT
1 CTTATC-TCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAGTCTTATCTTCCTGAAGTTGCA
*
80657062 GTGGAGCAGACTGAA
65 G-GAAGCAGACTGAA
80657077 GATAGCAAGT
Statistics
Matches: 392, Mismatches: 65, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
126 2 0.01
127 64 0.16
128 43 0.11
129 1 0.00
131 2 0.01
132 28 0.07
133 76 0.19
134 138 0.35
135 38 0.10
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (132 bp):
CTTATCTCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAGTCTTATCTTCCTGAAGTTGCAG
GAAGCAGACTGAAATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGACAA
GT
Found at i:80656873 original size:45 final size:45
Alignment explanation
Indices: 80656690--80656878 Score: 133
Period size: 45 Copynumber: 4.2 Consensus size: 45
80656680 AAGTTACAGA
* *
80656690 TCTTATCTCCATGTATCGGCTATAGAGCAGATC-AGAAATGGTGAA-
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCTA-AAATGAT-AAG
** ***
80656735 TCTTATCTCCATGTATCGGCTATGGAGCAGAT-TTTAGCCACT-AG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCTAAAATGA-TAAG
* * * * * * *
80656779 TCTTATCTTCTTGAAGT-TGC-A-GGAAGCAGA-CTAAAAATTTACAAA
1 TCTTATCTCCATGTA-TCGGCTATGG-AGCAGATCT-AAAA-TGATAAG
80656824 TCTTATCTCCATGTATCGGCTATGGAGCAGATCTAAAATGATAAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCTAAAATGATAAG
80656869 TCTTATCTCC
1 TCTTATCTCC
80656879 CTGAAGTTGC
Statistics
Matches: 106, Mismatches: 25, Indels: 26
0.68 0.16 0.17
Matches are distributed among these distances:
42 2 0.02
43 9 0.08
44 17 0.16
45 63 0.59
46 11 0.10
47 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (45 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATCTAAAATGATAAG
Found at i:80656895 original size:45 final size:45
Alignment explanation
Indices: 80656846--80657116 Score: 212
Period size: 45 Copynumber: 6.2 Consensus size: 45
80656836 GTATCGGCTA
80656846 TGGAGCAGATCTAAAAT-GATAAGTCTTATCTCCCTGAAGTTGCAG
1 TGGAGCAGATCTAAAATAG-TAAGTCTTATCTCCCTGAAGTTGCAG
* * *
80656891 TGGAGCA-AACTAAAGATAGTAAGTCTTATCTTCCTAAAGTTGCAG
1 TGGAGCAGATCTAAA-ATAGTAAGTCTTATCTCCCTGAAGTTGCAG
* * * * *
80656936 -GAAGCAGAT-T-GAA-AG--A-TCTTATCTCCATGTA-TCGACTA-
1 TGGAGCAGATCTAAAATAGTAAGTCTTATCTCCCTGAAGTTG-C-AG
** * ** *
80656974 TGGAGCAGAT-TTTATTCCTAAGTCTTATCTTCCTGAAGTTGCAG
1 TGGAGCAGATCTAAAATAGTAAGTCTTATCTCCCTGAAGTTGCAG
*
80657018 TGGAGCAGA-CTAAAGATAGTAAGTCTTATCTCCCTGAAGTTGCTG
1 TGGAGCAGATCTAAA-ATAGTAAGTCTTATCTCCCTGAAGTTGCAG
* * *
80657063 TGGAGCAGA-CTGAAGATAGCAAGTCTTATCTTCCTGAAGTTGCAG
1 TGGAGCAGATCT-AAAATAGTAAGTCTTATCTCCCTGAAGTTGCAG
*
80657108 -GAAGCAGAT
1 TGGAGCAGAT
80657117 TGAAAGATCT
Statistics
Matches: 177, Mismatches: 32, Indels: 34
0.73 0.13 0.14
Matches are distributed among these distances:
37 2 0.01
38 12 0.07
39 11 0.06
40 1 0.01
41 2 0.01
42 1 0.01
43 3 0.02
44 43 0.24
45 99 0.56
46 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (45 bp):
TGGAGCAGATCTAAAATAGTAAGTCTTATCTCCCTGAAGTTGCAG
Found at i:80657013 original size:82 final size:81
Alignment explanation
Indices: 80656910--80657241 Score: 324
Period size: 89 Copynumber: 3.9 Consensus size: 81
80656900 CTAAAGATAG
*
80656910 TAAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGACTAT
1 TAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCG-CTAT
*
80656975 GGAGCAGATTTTATTCC
65 GGAGCAGATTTTATACC
* * * * *
80656992 TAAGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGTAAGTCTTATCTCCCTGAAG
1 TAAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGA-T--TGAAAG--A-TCTTATCTCCATGTA-
* * *** *
80657057 TTGCTGTGGAGCAGACTGAAGATAGC
58 TCGCTATGGAGCAGA-T-TTTATACC
80657083 -AAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGGCTAT
1 TAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATC-GCTAT
*
80657147 GGAGCAGATTTTATCCC
65 GGAGCAGATTTTATACC
* * *
80657164 CAAGTCTTATCTTCCTGAAGTTGCAGGGAGCAGACTGAAAACATACAGATCTTATCTCCATGTAT
1 TAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTG-----A-A-AGATCTTATCTCCATGTAT
80657229 CAGCTATGGAGCA
59 C-GCTATGGAGCA
80657242 ATCCCTTTTT
Statistics
Matches: 203, Mismatches: 28, Indels: 31
0.77 0.11 0.12
Matches are distributed among these distances:
81 3 0.01
82 61 0.30
83 32 0.16
84 2 0.01
86 8 0.04
87 1 0.00
88 3 0.01
89 62 0.31
90 28 0.14
91 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (81 bp):
TAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGCTATG
GAGCAGATTTTATACC
Found at i:80657043 original size:172 final size:171
Alignment explanation
Indices: 80656846--80657222 Score: 598
Period size: 172 Copynumber: 2.2 Consensus size: 171
80656836 GTATCGGCTA
*
80656846 TGGAGCAGATCTAAAATGATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAGT
1 TGGAGCAGA-CTAAAATGATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAGC
80656911 AAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGACTATG
65 AAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGACTATG
* *
80656976 GAGCAGATTTTATTCCTAAGTCTTATCTTCCTGAAGTTGCAG
130 GAGCAGATTTTATCCCCAAGTCTTATCTTCCTGAAGTTGCAG
* * *
80657018 TGGAGCAGACTAAAGAT-AGTAAGTCTTATCTCCCTGAAGTTGCTGTGGAGCAGACTGAAGATAG
1 TGGAGCAGACTAAA-ATGA-TAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAG
* *
80657082 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGGCTAT
64 CAAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGACTAT
80657147 GGAGCAGATTTTATCCCCAAGTCTTATCTTCCTGAAGTTGCAG
129 GGAGCAGATTTTATCCCCAAGTCTTATCTTCCTGAAGTTGCAG
*
80657190 -GGAGCAGACTGAAAA-CATACAGATCTTATCTCC
1 TGGAGCAGACT-AAAATGATA-AG-TCTTATCTCC
80657223 ATGTATCAGC
Statistics
Matches: 191, Mismatches: 8, Indels: 12
0.91 0.04 0.06
Matches are distributed among these distances:
170 2 0.01
171 20 0.10
172 169 0.88
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (171 bp):
TGGAGCAGACTAAAATGATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAGATAGCA
AGTCTTATCTTCCTAAAGTTGCAGGAAGCAGATTGAAAGATCTTATCTCCATGTATCGACTATGG
AGCAGATTTTATCCCCAAGTCTTATCTTCCTGAAGTTGCAG
Found at i:80658028 original size:132 final size:131
Alignment explanation
Indices: 80657729--80658172 Score: 473
Period size: 132 Copynumber: 3.4 Consensus size: 131
80657719 TATTTAGTCC
* * * **
80657729 AACGAGAAAATCGAAACCCAGCACAG-TAGGGCACGGTTCTTCGAATTTCTAAACATCGAGCATT
1 AACGAG-AAATTGCAACCCAGCAC-GTTAGGGCACGATTCCGCGAATTTC-AAACATCGAGCATT
* ** * * * *
80657793 ACCTTATTTTTTTTAGAATTTTAAG-AAACATGAGGGAAATTCTAAAGGGGATGTTCGATTATTT
63 ACCTT-TATTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAA-GGGATATTCGATTATTT
* *
80657857 TGAACC
126 TGAGCA
* * * * *
80657863 AAC-AGGAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTATCAAACCTCGAGTATTT
1 AACGA-GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATT-TCAAACATCGAGCATTA
* * * * *
80657927 CCTTTGTTTTAAAGAGTTTTTAGAAAACATGAATGAAATTCCAAAGGGACATTCGATTGTTTTGA
64 CCTTTATTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGA
80657992 GCA
129 GCA
* * * *
80657995 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACGTTGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATT-TCAAACATCGAGCATTAC
* * * * *
80658060 CTTCATTTTAAAG-GATTTTTAGAAGACATGAGTGAAATTTTGAAGGGATATTCGTTTATTTTGA
65 CTTTATTTTAAAGAG-TTTTTAGAAAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGA
80658124 GCA
129 GCA
*
80658127 AACGAGAAATTGCAACCCAGCATGTTAGGGCACGATTCCGCGAATT
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATT
80658173 GCCAAATATC
Statistics
Matches: 263, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
131 1 0.00
132 187 0.71
133 69 0.26
134 6 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (131 bp):
AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTTCAAACATCGAGCATTACC
TTTATTTTAAAGAGTTTTTAGAAAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGAGC
A
Found at i:80671976 original size:45 final size:45
Alignment explanation
Indices: 80671924--80672155 Score: 180
Period size: 45 Copynumber: 5.2 Consensus size: 45
80671914 GAAGTTGCAG
80671924 GGAGCAGACTGAAAATTACAGA-TCTTATCTCCATGTATCGGCTAT
1 GGAGCAGACTGAAAATTACAGAGTCTTATCTCCATGTAT-GGCTAT
* * * *
80671969 GGAGCAGA-TCGAAAATGACA-AGTCTTATCTCCCTGAAGTTGC-AGT
1 GGAGCAGACT-GAAAATTACAGAGTCTTATCTCCATGTA-TGGCTA-T
* * * * *
80672014 GGAGCAGACTGAAGA-TAGCA-AGTCTTATCTTCTTGAAGTTGC-A-
1 GGAGCAGACTGAAAATTA-CAGAGTCTTATCTCCATGTA-TGGCTAT
80672057 GGAAGCAGACTGAAAATTACAGA-TCTTATCTCCATGTATCGGCTAT
1 GG-AGCAGACTGAAAATTACAGAGTCTTATCTCCATGTAT-GGCTAT
* ** *
80672103 GGAGTAGA-TCGAAAATGGC-GAGTCTTATCTCCATGTATTGACTAT
1 GGAGCAGACT-GAAAATTACAGAGTCTTATCTCCATGTA-TGGCTAT
80672148 GGAGCAGA
1 GGAGCAGA
80672156 TTTCAGCCAC
Statistics
Matches: 154, Mismatches: 18, Indels: 30
0.76 0.09 0.15
Matches are distributed among these distances:
43 3 0.02
44 35 0.23
45 111 0.72
46 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (45 bp):
GGAGCAGACTGAAAATTACAGAGTCTTATCTCCATGTATGGCTAT
Found at i:80672229 original size:45 final size:45
Alignment explanation
Indices: 80672170--80672335 Score: 235
Period size: 45 Copynumber: 3.7 Consensus size: 45
80672160 AGCCACCAGC
80672170 CTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAAGATAGTAAGT
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAAGATAGTAAGT
* * * * * *
80672215 ATTGTCTCTCTGAAGTTGCAGTGGAGTAGACTAAAGATTGTAAGT
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAAGATAGTAAGT
* * *
80672260 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAAGATAGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAAGATAGTAAGT
*
80672305 CTTATCTTCCTGAAGTTGCAG-GAAGCAGACT
1 CTTATCTCCCTGAAGTTGCAGTGAAGCAGACT
80672336 GAAAATTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 9 0.09
45 96 0.91
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAAGATAGTAAGT
Found at i:80672423 original size:134 final size:135
Alignment explanation
Indices: 80671898--80672401 Score: 557
Period size: 134 Copynumber: 3.8 Consensus size: 135
80671888 ATTTCTGCCC
* *
80671898 CAAGTCTTATCTTTCTGAAGTTGCAGGGAGCAGACTGAAAATTACAGATCTTATCTCCATGTATC
1 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATC
* * *
80671963 GGCTATGGAGCAGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGC-AGTGGAGCAGACTGAA
66 GGCTATGGAGCAGATCGAAAATGGCAAGTCTTATCTCCATGAAGTTGCTAGTGGAGCAGACTAAA
80672027 GATAG
131 GATAG
*
80672032 CAAGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATC
1 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATC
* * * * **
80672097 GGCTATGGAGTAGATCGAAAATGGCGAGTCTTATCTCCATGTA-TTGACTA-TGGAGCAGATTTC
66 GGCTATGGAGCAGATCGAAAATGGCAAGTCTTATCTCCATGAAGTTG-CTAGTGGAGCAGACTAA
**
80672160 AGCCA-
130 AGATAG
* * * * *
80672165 CCAGCCTTATCTCCCTGAAGTTGCAGTGAAGCAGACT-AAAGATAGTA-AG-TATTGTCTCTC-T
1 CAAGTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAA-AT--TACAGATCTTATCTC-CAT
* * * * * * *
80672226 GAAGT-TGC-AGTGGAGTAGA-CTAAAGATTGTAAGTCTTATCTCCCTGAAGTTG-TAGTGGAGC
61 GTA-TCGGCTA-TGGAGCAGATCGAAA-ATGGCAAGTCTTATCTCCATGAAGTTGCTAGTGGAGC
80672287 AGACTAAAGATAG
123 AGACTAAAGATAG
*
80672300 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCTATGTATC
1 CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATC
* **
80672365 GGCTATGAAGCAGATC-AGAAATGGTGAGTCTTATCTC
66 GGCTATGGAGCAGATCGA-AAATGGCAAGTCTTATCTC
80672402 TATGTGTCGA
Statistics
Matches: 305, Mismatches: 44, Indels: 42
0.78 0.11 0.11
Matches are distributed among these distances:
132 2 0.01
133 38 0.12
134 225 0.74
135 38 0.12
136 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (135 bp):
CAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATC
GGCTATGGAGCAGATCGAAAATGGCAAGTCTTATCTCCATGAAGTTGCTAGTGGAGCAGACTAAA
GATAG
Found at i:80674787 original size:127 final size:125
Alignment explanation
Indices: 80674644--80675311 Score: 626
Period size: 127 Copynumber: 5.2 Consensus size: 125
80674634 GGAGTTCGAG
* * * * * *
80674644 GGTCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTCAGCTAAAATACAAAATATCCTTTGGAA
1 GGTCGTGCCCAATCGTGCTGGGCTTCAATTTTTCATTC-GCTAAAATATAGAATATCCTTTTGAA
** * * * * *
80674709 ATTTTGTCCATGTTTTTTTTTAAATTAAAATGAGGTAATACTTCATGTTTGGAAGTTTGGGA
65 ATTTCATCCA-GTTTTTTCTTAAAATAAAACGAGGCAATATTTCATGTTTGGAAGTTTGGGA
* * * * *
80674771 GGTCGTGCCCAGTCGTGCTAGGATTCAATTTTCCATTCGGCTAAAATATGGAATAT-CTTTTGGA
1 GGTCGTGCCCAATCGTGCTGGGCTTCAATTTTTCATTC-GCTAAAATATAGAATATCCTTTT-GA
* * * * * *
80674835 AATTTCATCCATGTTTTTTC-AAAAATTAAAATGAGGCAATATTTCGTATTTGGGGAGTTTGAGA
64 AATTTCATCCA-GTTTTTTCTTAAAA-TAAAACGAGGCAATATTTCATGTTT-GGAAGTTTGGGA
* * **
80674899 GATCGTGCCCAATCGTGCTGGGTTTCGTTTTTTTCATTCGACTAAAATATAGAATATCCTTTTTT
1 GGTCGTGCCCAATCGTGCTGGGCTTC-AATTTTTCATTCG-CTAAAATATAGAATATCC---TTT
** *
80674964 TGAAATTTCATCCACATTTTTCTTAAAATAAAACGAGGCAATATTTCGTGTTTGGAAGTTTGGGA
61 TGAAATTTCATCCAGTTTTTTCTTAAAATAAAACGAGGCAATATTTCATGTTTGGAAGTTTGGGA
* * ** *
80675029 AGTCGTGCCCAATCGTGCTGGGCTTCAA-TTTTCTATTCAACTAAAATACGGAATATCATTTTTT
1 GGTCGTGCCCAATCGTGCTGGGCTTCAATTTTTC-ATTC-GCTAAAATATAGAATATC--CTTTT
** *
80675093 GAAATTTCATCCA-CATATTCTTAAAATAAAACGAGGCAATATTTCATGTTTGGAAGTTTGGGA
62 GAAATTTCATCCAGTTTTTTCTTAAAATAAAACGAGGCAATATTTCATGTTTGGAAGTTTGGGA
* * *
80675156 AGTCGTGCCCAATCGTGCTGGGCTTCAATCTTCCATTCGACTAAAATATAGAATATCCTTTTGAA
1 GGTCGTGCCCAATCGTGCTGGGCTTCAATTTTTCATTCG-CTAAAATATAGAATATCCTTTTGAA
* * * * * * * * * * **
80675221 ATTTCATACA-TGTTTTCTCAAATTAAAATGAGGCAATGTTTCGTATTTGGAAATTCGATA
65 ATTTCATCCAGTTTTTTCTTAAAATAAAACGAGGCAATATTTCATGTTTGGAAGTTTGGGA
** * *
80675281 AATCATGCCCAATCGTGCTGGGTTTCAATTT
1 GGTCGTGCCCAATCGTGCTGGGCTTCAATTT
80675312 ACAGTTTGGG
Statistics
Matches: 451, Mismatches: 74, Indels: 34
0.81 0.13 0.06
Matches are distributed among these distances:
125 80 0.18
126 7 0.02
127 179 0.40
128 58 0.13
129 43 0.10
130 34 0.08
131 29 0.06
132 17 0.04
133 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (125 bp):
GGTCGTGCCCAATCGTGCTGGGCTTCAATTTTTCATTCGCTAAAATATAGAATATCCTTTTGAAA
TTTCATCCAGTTTTTTCTTAAAATAAAACGAGGCAATATTTCATGTTTGGAAGTTTGGGA
Found at i:80675131 original size:258 final size:252
Alignment explanation
Indices: 80674619--80675311 Score: 779
Period size: 258 Copynumber: 2.7 Consensus size: 252
80674609 AACATAAGGA
* * * *
80674619 AATATTTTGTGTTTGGGAGTTCGAG-GGTCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTC-
1 AATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCG
* * * ** ** * *
80674682 AGCTAAAATACAAAATATCCTTTGGAAATTTTGTCCATGTTTTTTTTTAAATTAAAATGAGGTAA
66 A-CTAAAATATAGAATATCCTTTTGAAATTTCATCCA-CATTTTTCTTAAATTAAAATGAGGCAA
* * * * * **
80674747 TACTTCATGTTTGGAAGTTTGGGAGGTCGTGCCCAGTCGTGCTAGGATTCAATTTTCCATTCGGC
129 TATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGATTCAATTTTCCATTCAAC
* ** * *
80674812 TAAAATATGGAATATCTTTTGGAAATTTCATCCATGTTTTTTCAAAAATTAAAATGAGGC
194 TAAAATACGGAATATCTTTTGGAAATTTCATCCACATTTCTT-AAAAATTAAAACGAGGC
* *
80674872 AATATTTCGTATTTGGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGTTTTTTTCATT
1 AATATTTCGTGTTT-GGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCG-ATTTTTCATT
* *
80674937 CGACTAAAATATAGAATATCCTTTTTTTGAAATTTCATCCACATTTTTCTTAAAATAAAACGAGG
64 CGACTAAAATATAGAATATCC---TTTTGAAATTTCATCCACATTTTTCTTAAATTAAAATGAGG
* *
80675002 CAATATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGCTTCAATTTTCTATTC
126 CAATATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGATTCAATTTTCCATTC
*
80675067 AACTAAAATACGGAATATCATTTTTTGAAATTTCATCCACATATTCTT-AAAA-TAAAACGAGGC
191 AACTAAAATACGGAATATC--TTTTGGAAATTTCATCCACAT-TTCTTAAAAATTAAAACGAGGC
* * * * * * *
80675130 AATATTTCATGTTTGGAAGTTTGGGA-AGTCGTGCCCAATCGTGCTGGGCTTCAATCTTCCATTC
1 AATATTTCGTGTTTGGGAGTTTGAGAGA-TCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTC
*
80675194 GACTAAAATATAGAATATCCTTTTGAAATTTCAT--ACATGTTTTCTCAAATTAAAATGAGGCAA
65 GACTAAAATATAGAATATCCTTTTGAAATTTCATCCACAT-TTTTCTTAAATTAAAATGAGGCAA
* * * * ** * * *
80675257 TGTTTCGTATTTGGAAATTCGATAAATCATGCCCAATCGTGCTGGGTTTCAATTT
129 TATTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGATTCAATTT
80675312 ACAGTTTGGG
Statistics
Matches: 375, Mismatches: 53, Indels: 25
0.83 0.12 0.06
Matches are distributed among these distances:
251 4 0.01
252 67 0.18
253 26 0.07
254 10 0.03
255 26 0.07
256 54 0.14
257 34 0.09
258 114 0.30
259 18 0.05
260 18 0.05
261 4 0.01
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (252 bp):
AATATTTCGTGTTTGGGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCG
ACTAAAATATAGAATATCCTTTTGAAATTTCATCCACATTTTTCTTAAATTAAAATGAGGCAATA
TTTCGTGTTTGGAAGTTTGGGAAGTCGTGCCCAATCGTGCTGGGATTCAATTTTCCATTCAACTA
AAATACGGAATATCTTTTGGAAATTTCATCCACATTTCTTAAAAATTAAAACGAGGC
Found at i:80676277 original size:18 final size:18
Alignment explanation
Indices: 80676250--80676293 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
80676240 TACATCCAAT
80676250 ACAA-CCAATTAAACCCA
1 ACAACCCAATTAAACCCA
* *
80676267 ATAACCCAATTTAACCCA
1 ACAACCCAATTAAACCCA
80676285 ACAACCCAA
1 ACAACCCAA
80676294 GCTACCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAACCCAATTAAACCCA
Found at i:80676761 original size:14 final size:13
Alignment explanation
Indices: 80676736--80676765 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
80676726 AAACATATAA
80676736 AAATATAATAAAT
1 AAATATAATAAAT
80676749 AAATATAAATAAAT
1 AAATAT-AATAAAT
80676763 AAA
1 AAA
80676766 AAATTACCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AAATATAATAAAT
Found at i:80676764 original size:21 final size:21
Alignment explanation
Indices: 80676730--80676769 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
80676720 ATATTAAAAC
*
80676730 ATATAAAAATATAATAAATAA
1 ATATAAAAATATAAAAAATAA
80676751 ATATAAATAA-ATAAAAAAT
1 ATATAAA-AATATAAAAAAT
80676770 TACCTTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
ATATAAAAATATAAAAAATAA
Found at i:80677607 original size:2 final size:2
Alignment explanation
Indices: 80677594--80677657 Score: 76
Period size: 2 Copynumber: 32.0 Consensus size: 2
80677584 CGACTTACTA
*
80677594 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
80677635 GT AT AT TT TT AGT AT AT AT AT AT
1 AT AT AT AT AT A-T AT AT AT AT AT
80677658 TTGTGAAGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
1 1 0.02
2 51 0.94
3 2 0.04
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (2 bp):
AT
Found at i:80677718 original size:20 final size:18
Alignment explanation
Indices: 80677682--80677720 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
80677672 CAATAGTTGT
*
80677682 TTTTTTATATTATTATTA
1 TTTTTAATATTATTATTA
80677700 TTTTTAATATGTATATATTA
1 TTTTTAATAT-TAT-TATTA
80677720 T
1 T
80677721 GTATATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTAATATTATTATTA
Found at i:80677766 original size:17 final size:20
Alignment explanation
Indices: 80677742--80677799 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
80677732 AATACTACAT
*
80677742 TATATATATTT-TTATGTTA
1 TATATATATTTCTAATGTTA
*
80677761 TGTATATATTTCTAATGTTA
1 TATATATATTTCTAATGTTA
80677781 TATATTAAGTATTTCTAAT
1 TATA-T-A-TATTTCTAAT
80677800 ATCCTTATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 10 0.31
20 10 0.31
21 1 0.03
22 1 0.03
23 10 0.31
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (20 bp):
TATATATATTTCTAATGTTA
Found at i:80677961 original size:23 final size:23
Alignment explanation
Indices: 80677896--80677961 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
80677886 TGTATATAGC
* *
80677896 GTATATGTTTTATAT-GTATTAT
1 GTATATTTTTTATATACTATTAT
* *
80677918 GTATATATTTTCA-ATATTATTA-
1 GTATAT-TTTTTATATACTATTAT
80677940 GTTATATTTTTTATATACTATT
1 G-TATATTTTTTATATACTATT
80677962 CCATGTACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
22 14 0.40
23 21 0.60
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (23 bp):
GTATATTTTTTATATACTATTAT
Found at i:80678150 original size:20 final size:19
Alignment explanation
Indices: 80678099--80678150 Score: 50
Period size: 22 Copynumber: 2.5 Consensus size: 19
80678089 TTTATTATTA
*
80678099 ATATTAGTATATATATTTT
1 ATATTAGTATACATATTTT
*
80678118 ATTATTCTTGTATACATATTTT
1 A-TA-T-TAGTATACATATTTT
80678140 ATATATAGTAT
1 ATAT-TAGTAT
80678151 TATTTTCGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 1 0.04
20 8 0.31
21 3 0.12
22 14 0.54
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
ATATTAGTATACATATTTT
Found at i:80678404 original size:2 final size:2
Alignment explanation
Indices: 80678397--80678432 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
80678387 ATTACTATCC
80678397 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80678433 TACATACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80689229 original size:39 final size:39
Alignment explanation
Indices: 80689146--80689298 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
80689136 TATGGTAACC
* * *
80689146 CGCACAAATGCCTTCGGGACTTAACCTGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
80689186 CGCACAATTGCCTTCGGGCTTAGCCCGAATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
80689225 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
80689264 CACACAATTGCCTTCAGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
80689299 TCGAACATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 84 0.83
40 17 0.17
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:80693878 original size:73 final size:73
Alignment explanation
Indices: 80693682--80694141 Score: 595
Period size: 73 Copynumber: 6.2 Consensus size: 73
80693672 TAATGTTTTT
* *
80693682 ATTTCTG-TTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
80693746 T-ATTTCCA
66 TAATTT-CA
* * *
80693754 TTTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGGACACGCTAA
1 ATTTCTG-TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
80693819 GGTAATTTCA
64 GGTAATTTCA
**
80693829 ATTTCTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTACGCTGAG
1 ATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
80693893 GTATTTTCA
65 GTAATTTCA
* *
80693902 ATTTCTGCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 ATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
80693967 GTAATTTCA
65 GTAATTTCA
* *
80693976 ATTTCTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAG
1 ATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* *
80694040 TTATTTTCA
65 GTAATTTCA
*
80694049 ATTTCTGCTACTGCTTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 A--T-T--T-CTG-TTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
* **
80694114 ACGTTGAGGTGTTTTCA
57 ACGCTGAGGTAATTTCA
80694131 ATTTCTGTTTT
1 ATTTCTGTTTT
80694142 TTCAATTTAT
Statistics
Matches: 342, Mismatches: 28, Indels: 33
0.85 0.07 0.08
Matches are distributed among these distances:
72 8 0.02
73 120 0.35
74 72 0.21
75 67 0.20
76 8 0.02
77 1 0.00
78 1 0.00
79 6 0.02
80 4 0.01
82 55 0.16
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (73 bp):
ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTCA
Found at i:80693969 original size:147 final size:148
Alignment explanation
Indices: 80693682--80694140 Score: 690
Period size: 147 Copynumber: 3.1 Consensus size: 148
80693672 TAATGTTTTT
* * *
80693682 ATTTCTG-TT-TCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAG
1 ATTTCTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
* * *
80693745 GTATTTCCATTTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTTAGCCTCAGG
65 GTATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
80693810 ACACGCTAAGGTAATTTCA
130 ACACGCTGAGGTAATTTCA
*
80693829 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGTACGCTGAGG
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
*
80693894 TATTTTCAATTTCTGC-TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGA
66 TATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
80693958 CACGCTGAGGTAATTTCA
131 CACGCTGAGGTAATTTCA
* *
80693976 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCATGCTGAGT
1 ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
*
80694041 TATTTTCAATTTCTGCTACTGCTTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGC
66 TATTTTCAA--T-T--T-CTGCTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* **
80694106 CTCAGGACACGTTGAGGTGTTTTCA
124 CTCAGGACACGCTGAGGTAATTTCA
80694131 ATTTCTGTTT
1 ATTTCTGTTT
80694141 TTTCAATTTA
Statistics
Matches: 285, Mismatches: 17, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
147 141 0.49
148 64 0.22
149 3 0.01
150 1 0.00
152 1 0.00
153 4 0.01
154 4 0.01
155 67 0.24
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (148 bp):
ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
TATTTTCAATTTCTGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCA
Found at i:80694155 original size:14 final size:15
Alignment explanation
Indices: 80694125--80694160 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
80694115 CGTTGAGGTG
*
80694125 TTTTCAATTTCTGTT
1 TTTTCAATTTATGTT
80694140 TTTTCAATTTAT-TT
1 TTTTCAATTTATGTT
80694154 TTTTCAA
1 TTTTCAA
80694161 AAATCAACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.19, C:0.11, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTCAATTTATGTT
Found at i:80694302 original size:81 final size:81
Alignment explanation
Indices: 80694155--80694315 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
80694145 AATTTATTTT
* * * * *
80694155 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACATGTCGAGGTATTTTC
1 TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCTTCGGATCACATGTCGAGCTATCTTC
80694220 AAAATCTGCTTTTAAG
66 AAAATCTGCTTTTAAG
* *
80694236 TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCTTTGGATCACTTG-CTGAGCTATCTT
1 TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCTTCGGATCACATGTC-GAGCTATCTT
* *
80694300 CAAATTCTGTTTTTAA
65 CAAAATCTGCTTTTAA
80694316 TATCTATTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 69 0.99
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Consensus pattern (81 bp):
TTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTAAGCTTCGGATCACATGTCGAGCTATCTTC
AAAATCTGCTTTTAAG
Found at i:80694840 original size:18 final size:18
Alignment explanation
Indices: 80694813--80694856 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
80694803 TACGTCCAAT
80694813 ACAA-CCAATTAAACCCA
1 ACAACCCAATTAAACCCA
* *
80694830 ATAACCCAATTTAACCCA
1 ACAACCCAATTAAACCCA
80694848 ACAACCCAA
1 ACAACCCAA
80694857 GCTACCCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14
Consensus pattern (18 bp):
ACAACCCAATTAAACCCA
Found at i:80695298 original size:20 final size:19
Alignment explanation
Indices: 80695269--80695308 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
80695259 TTTCTAATAT
* *
80695269 ATATATTAAAACATATAAAA
1 ATATAATAAAA-AAATAAAA
80695289 ATATAATAAAAAAATAAAA
1 ATATAATAAAAAAATAAAA
80695308 A
1 A
80695309 AATTACACGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (19 bp):
ATATAATAAAAAAATAAAA
Found at i:80696154 original size:15 final size:15
Alignment explanation
Indices: 80696114--80696154 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
80696104 AATATATACA
* *
80696114 TATATATATTATTAT
1 TATATATATTTTTAG
*
80696129 TATGTATATTTTTAG
1 TATATATATTTTTAG
80696144 TATATATATTT
1 TATATATATTT
80696155 GTGAAGTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (15 bp):
TATATATATTTTTAG
Found at i:80696214 original size:20 final size:18
Alignment explanation
Indices: 80696176--80696214 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
80696166 TCAATAGTTG
*
80696176 TTTTTTATATTATTATTA
1 TTTTTAATATTATTATTA
80696194 TTTTTAATATGTATATATTA
1 TTTTTAATAT-TAT-TATTA
80696214 T
1 T
80696215 GTATATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 3 0.17
20 6 0.33
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTAATATTATTATTA
Found at i:80696452 original size:23 final size:23
Alignment explanation
Indices: 80696387--80696452 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
80696377 TGTATATAGC
* *
80696387 GTATATGTTTTATAT-GTATTAT
1 GTATATTTTTTATATACTATTAT
* *
80696409 GTATATATTTTCA-ATATTATTA-
1 GTATAT-TTTTTATATACTATTAT
80696431 GTTATATTTTTTATATACTATT
1 G-TATATTTTTTATATACTATT
80696453 CCATGTACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
22 14 0.40
23 21 0.60
ACGTcount: A:0.30, C:0.03, G:0.08, T:0.59
Consensus pattern (23 bp):
GTATATTTTTTATATACTATTAT
Found at i:80696679 original size:21 final size:21
Alignment explanation
Indices: 80696655--80696708 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
80696645 TTCATATATC
80696655 ATTATATTTATTATTAT-ACCT
1 ATTAT-TTTATTATTATCACCT
* *
80696676 ATTATTTTTACTATTATCACTT
1 ATTA-TTTTATTATTATCACCT
80696698 ATTATTTTATT
1 ATTATTTTATT
80696709 TTAATATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTATTTTATTATTATCACCT
Found at i:80696794 original size:11 final size:11
Alignment explanation
Indices: 80696772--80696802 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
80696762 ATATTTATTT
80696772 TATATATATATG
1 TATATAT-TATG
80696784 TATATATTATG
1 TATATATTATG
80696795 TATATATT
1 TATATATT
80696803 TTAACATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (11 bp):
TATATATTATG
Found at i:80698498 original size:20 final size:20
Alignment explanation
Indices: 80698470--80698526 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
80698460 ATACAGTATC
*
80698470 GATATTTTGTGTAAGGTGTT
1 GATACTTTGTGTAAGGTGTT
*
80698490 GATACTTTGTGCAAGGTGTT
1 GATACTTTGTGTAAGGTGTT
* *
80698510 GATACTTAGAGTAAGGT
1 GATACTTTGTGTAAGGT
80698527 ACTGATACCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.25, C:0.05, G:0.30, T:0.40
Consensus pattern (20 bp):
GATACTTTGTGTAAGGTGTT
Found at i:80700783 original size:2 final size:2
Alignment explanation
Indices: 80700752--80700794 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
80700742 TCCTTCATAC
* * * *
80700752 AT AT AC AT AT AC AT AT AC AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80700794 A
1 A
80700795 CATACAAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:80700794 original size:6 final size:6
Alignment explanation
Indices: 80700748--80700792 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
80700738 TTTTTCCTTC
* *
80700748 ATACAT ATACAT ATACAT ATACAT ATACAT ATATAT ATATAT ATA
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATA
80700793 TACATACAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (6 bp):
ATACAT
Found at i:80703146 original size:32 final size:32
Alignment explanation
Indices: 80703106--80703170 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 32
80703096 TGTATGCATT
80703106 TTAGCATTTTAATAGTTAAT-GATTGATGGGCA
1 TTAGCATTTTAATAGTTAATGGA-TGATGGGCA
80703138 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
80703170 T
1 T
80703171 AATAAGCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 30 0.94
33 2 0.06
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:80711184 original size:32 final size:32
Alignment explanation
Indices: 80711148--80711212 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 32
80711138 TGTATGCATT
80711148 TTAGCATTTTAATAGTTAAT-GAATGATGGGCA
1 TTAGCATTTTAATAGTTAATAG-ATGATGGGCA
80711180 TTAGCATTTTAATAGTTAATAGATGATGGGCA
1 TTAGCATTTTAATAGTTAATAGATGATGGGCA
80711212 T
1 T
80711213 GATAAGCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 31 0.97
33 1 0.03
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATAGATGATGGGCA
Found at i:80712745 original size:25 final size:26
Alignment explanation
Indices: 80712694--80712745 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
80712684 TTTACAGTTT
80712694 TACCCCTAGGAGATAAATTACCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
80712720 TACCCCTAGG-GTTAAATTACCTAAA
1 TACCCCTAGGAGATAAATTACCGAAA
80712745 T
1 T
80712746 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:80714193 original size:2 final size:2
Alignment explanation
Indices: 80714186--80714222 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
80714176 ATTTTTAATT
80714186 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80714223 TAAGATGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:80714770 original size:28 final size:28
Alignment explanation
Indices: 80714730--80714783 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
80714720 TGTAGTTCTA
80714730 TATGGATTTTACTTTTATTTTATTTTTT
1 TATGGATTTTACTTTTATTTTATTTTTT
80714758 TATGGATTTTACTTTTATTTTATTTT
1 TATGGATTTTACTTTTATTTTATTTT
80714784 ACCATTGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.19, C:0.04, G:0.07, T:0.70
Consensus pattern (28 bp):
TATGGATTTTACTTTTATTTTATTTTTT
Found at i:80716543 original size:126 final size:125
Alignment explanation
Indices: 80716383--80716625 Score: 432
Period size: 126 Copynumber: 1.9 Consensus size: 125
80716373 GTTTTAGCCT
80716383 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* *
80716448 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAGAGTGAACTAG
66 CTTCGAATTCTTTAAATACCAAACATT-CCTTTATTTTGAAAAATTTTGAGAGTGAACTAG
*
80716509 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* *
80716574 CTTTGAATTCTTTGAATACCAAACATTCCTTTATTTTGAAAAATTTTGAGAG
66 CTTCGAATTCTTTAAATACCAAACATTCCTTTATTTTGAAAAATTTTGAGAG
80716626 AAGATCAATG
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 24 0.21
126 88 0.79
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (125 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCGAATTCTTTAAATACCAAACATTCCTTTATTTTGAAAAATTTTGAGAGTGAACTAG
Found at i:80716766 original size:13 final size:13
Alignment explanation
Indices: 80716729--80716772 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
80716719 CATATATAGA
*
80716729 TAATAAAAATAA-
1 TAATAATAATAAT
*
80716741 TAATAATAGTAAT
1 TAATAATAATAAT
*
80716754 TAATAGTAATAAT
1 TAATAATAATAAT
80716767 TAATAA
1 TAATAA
80716773 AACAACAGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (13 bp):
TAATAATAATAAT
Found at i:80717107 original size:14 final size:14
Alignment explanation
Indices: 80717088--80717118 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
80717078 ACATATTTAC
*
80717088 ATAATAAATATATA
1 ATAATAAATAAATA
80717102 ATAATAAATAAATA
1 ATAATAAATAAATA
80717116 ATA
1 ATA
80717119 TAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:80717121 original size:19 final size:18
Alignment explanation
Indices: 80717090--80717126 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
80717080 ATATTTACAT
80717090 AATAAATATATAATAATA
1 AATAAATATATAATAATA
80717108 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
80717127 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:80717171 original size:60 final size:60
Alignment explanation
Indices: 80717104--80717235 Score: 148
Period size: 59 Copynumber: 2.2 Consensus size: 60
80717094 AATATATAAT
* *
80717104 AATAAATAAAT-AATATAATAAT-ATGAAACAT-AA-CTCAAATTAATTAAATTAATAG-AA
1 AATAAA-AAATAAATATAAAAATAATGAAA-ATAAAGCTCAAATTAATTAAATTAACAGTAA
* * *
80717161 AATAAAAAATAAATATAAAAATAATGAGAATAAAGCTGAAATTAATTAATTTAACAGTAA
1 AATAAAAAATAAATATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAACAGTAA
80717221 AATAACAAAAATAAA
1 AAT-A-AAAAATAAA
80717236 AAAGGGGTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
56 4 0.06
57 18 0.29
58 7 0.11
59 19 0.30
60 5 0.08
61 1 0.02
62 9 0.14
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (60 bp):
AATAAAAAATAAATATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAACAGTAA
Found at i:80717461 original size:11 final size:11
Alignment explanation
Indices: 80717441--80717486 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
80717431 GTATTCTCTA
80717441 AAAAATTCCTCC
1 AAAAA-TCCTCC
*
80717453 AAAAATCCTCT
1 AAAAATCCTCC
80717464 AAAAATCCTCTC
1 AAAAATCCTC-C
*
80717476 CAAAATCCTCC
1 AAAAATCCTCC
80717487 CCAAAATCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
11 16 0.53
12 14 0.47
ACGTcount: A:0.41, C:0.35, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATCCTCC
Found at i:80717468 original size:24 final size:23
Alignment explanation
Indices: 80717436--80717485 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
80717426 TATGTGTATT
80717436 CTCTAAAAAATTCCTC-CAAAAATC
1 CTCT-AAAAA-TCCTCTCAAAAATC
*
80717460 CTCTAAAAATCCTCTCCAAAATC
1 CTCTAAAAATCCTCTCAAAAATC
80717483 CTC
1 CTC
80717486 CCCAAAATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 5 0.21
23 15 0.62
24 4 0.17
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (23 bp):
CTCTAAAAATCCTCTCAAAAATC
Found at i:80717481 original size:12 final size:12
Alignment explanation
Indices: 80717449--80717495 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
80717439 TAAAAAATTC
80717449 CTCCAAAAATCCT
1 CTCC-AAAATCCT
*
80717462 CT-AAAAATCCT
1 CTCCAAAATCCT
80717473 CTCCAAAATCCT
1 CTCCAAAATCCT
*
80717485 CCCCAAAATCC
1 CTCCAAAATCC
80717496 CCCCATACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.33
12 18 0.60
13 2 0.07
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (12 bp):
CTCCAAAATCCT
Found at i:80717573 original size:17 final size:18
Alignment explanation
Indices: 80717551--80717588 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
80717541 ACTTATAACA
80717551 AGTA-GGGTGATGGAGGT
1 AGTAGGGGTGATGGAGGT
80717568 AGTAGGGGTGATGGAGGT
1 AGTAGGGGTGATGGAGGT
80717586 AGT
1 AGT
80717589 GGACGGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.24, C:0.00, G:0.53, T:0.24
Consensus pattern (18 bp):
AGTAGGGGTGATGGAGGT
Found at i:80717619 original size:37 final size:37
Alignment explanation
Indices: 80717569--80717643 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
80717559 GATGGAGGTA
*
80717569 GTAGGGGTGATGGAGGTAGTGGACGGTTTAGTAGGGT
1 GTAGGGGCGATGGAGGTAGTGGACGGTTTAGTAGGGT
*
80717606 GTAGGGGCGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTAGGGGCGATGGAGGTAGTGGACGGTTTAGTAGGGT
80717643 G
1 G
80717644 ATGGAGTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.19, C:0.03, G:0.52, T:0.27
Consensus pattern (37 bp):
GTAGGGGCGATGGAGGTAGTGGACGGTTTAGTAGGGT
Found at i:80717649 original size:29 final size:29
Alignment explanation
Indices: 80717614--80717672 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
80717604 GTGTAGGGGC
80717614 GATGGAGGTAGTGGAT-GGTTTAGTAGGGT
1 GATGGAGGTAGTGG-TCGGTTTAGTAGGGT
* *
80717643 GATGGAGTTAGTGGTCGGTTTAGTGGGGT
1 GATGGAGGTAGTGGTCGGTTTAGTAGGGT
80717672 G
1 G
80717673 TTTAATTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 1 0.04
29 26 0.96
ACGTcount: A:0.17, C:0.02, G:0.49, T:0.32
Consensus pattern (29 bp):
GATGGAGGTAGTGGTCGGTTTAGTAGGGT
Found at i:80718140 original size:133 final size:133
Alignment explanation
Indices: 80717885--80718992 Score: 1691
Period size: 133 Copynumber: 8.3 Consensus size: 133
80717875 GATCTACTGT
*** * *
80717885 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTA--TTTAGCCTGCTCCACTCC
* ** *
80717950 TGCTCAGTG-AGATAAGGCTGATGATTGGAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
64 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
*
80718014 ATCAA
129 ACCAA
** * *
80718019 AATTTGATCTGCTTTGCTCCTGCTCAGTGAAGATAAGATCTAGTATATAGCCTGTTCCACTCCTG
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
*
80718084 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCAGATACATGGAGATAAGATTCAC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
80718149 CAA
131 CAA
** * *
80718152 AATTTGATCTGCTCTACTCCTGCTCAGTGAAGATAAGATCTAGTATTTGGCCTGCTTCACTCCTG
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
* *
80718217 CTCAGTGAAGATAAGACTGGTGGCTGAAATCTGCTCCATTGCCGATACATGAAGATAAGATTCAC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
80718282 CAA
131 CAA
* * *
80718285 AATTTGATCTGCTCCGCTCCTACTCAGCGAAGATAAGATCTAGTATTTAACCTGCTCCACTCCTG
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
* * *
80718350 CTCAGTGAAGATAAGGCTGGTGGCTGAAATTTGCTCCATTACTGATACATGGAGATAAGATTCAC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
80718415 CAA
131 CAA
* * *
80718418 AATTTGATCTGCTCCACTCTTTCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
* * *
80718483 CTCAGTGAAGGTAAGGCTGGTGGCTGAAACCTGCTTCATTGCCGATACATGGAGATAAGATTCAC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
80718548 CAA
131 CAA
* * * *
80718551 AATTTGATCTGCTCCGCTCTTGCTCAGCGAAGATAAGATCTAGTATTTAGCATGCTCCACTCCTA
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
*
80718616 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGACTT-G
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TTCA
80718680 CCAA
130 CCAA
* * * *
80718684 AATTTGATCTGCTTCACTCCTACTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTA--TTTAGCCTGCTCCACTCC
80718749 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
64 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
80718814 ACCAA
129 ACCAA
* * *
80718819 AATTTAATCTGCTTCGCTCCTGCTTAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
* * *
80718884 CTCAGTGAAGATAAGGCTTGTGGCTGAAATCTGCTCTAATT-CCGATACATGGAGATAAGATTCG
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTC-CATTGCCGATACATGGAGATAAGATTCA
80718948 CCAA
130 CCAA
* *
80718952 AATTTGATCTGCTCCGCTTCTGCTCAGCGAAGATAAGATCT
1 AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCT
80718993 GTCAAAATTT
Statistics
Matches: 894, Mismatches: 74, Indels: 13
0.91 0.08 0.01
Matches are distributed among these distances:
132 25 0.03
133 698 0.78
134 49 0.05
135 122 0.14
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (133 bp):
AATTTGATCTGCTCCGCTCCTGCTCAGTGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAC
CAA
Found at i:80718186 original size:46 final size:43
Alignment explanation
Indices: 80718148--80718232 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
80718138 ATAAGATTCA
*
80718148 CCAAAATTTGATCTGC-TCTACTCCTGCTCAGTGAAGATAAGAT
1 CCAAAATTTGACCTGCTTC-ACTCCTGCTCAGTGAAGATAAGAT
* ** *
80718191 CTAGTATTTGGCCTGCTTCACTCCTGCTCAGTGAAGATAAGA
1 CCAAAATTTGACCTGCTTCACTCCTGCTCAGTGAAGATAAGA
80718233 CTGGTGGCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 34 0.94
44 2 0.06
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (43 bp):
CCAAAATTTGACCTGCTTCACTCCTGCTCAGTGAAGATAAGAT
Found at i:80720356 original size:24 final size:24
Alignment explanation
Indices: 80720329--80720398 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
80720319 TCGCCTTGGC
80720329 CTCTCCTTTGCTTTTCTTTTCTTT
1 CTCTCCTTTGCTTTTCTTTTCTTT
** * *
80720353 CTCTTTTTTGTTTTTCTCTTCTTT
1 CTCTCCTTTGCTTTTCTTTTCTTT
*
80720377 -T-TCCTTTTCTTTT-TTTCTCTTT
1 CTCTCCTTTGCTTTTCTTT-TCTTT
80720399 GCTTTTTCTC
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
21 2 0.06
22 13 0.36
23 1 0.03
24 20 0.56
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.73
Consensus pattern (24 bp):
CTCTCCTTTGCTTTTCTTTTCTTT
Found at i:80720387 original size:15 final size:15
Alignment explanation
Indices: 80720339--80720417 Score: 68
Period size: 13 Copynumber: 5.7 Consensus size: 15
80720329 CTCTCCTTTG
80720339 CTTTTCTTTTCTTTCT
1 CTTTTCTTTT-TTTCT
80720355 CTTTT-TTGTTTTTCT
1 CTTTTCTT-TTTTTCT
80720370 C--TTC--TTTTTC-
1 CTTTTCTTTTTTTCT
80720380 CTTTTCTTTTTTTCT
1 CTTTTCTTTTTTTCT
*
80720395 CTTTGC--TTTTTCT
1 CTTTTCTTTTTTTCT
80720408 CTTTT-TTTTT
1 CTTTTCTTTTT
80720418 GAAAGTGAAG
Statistics
Matches: 52, Mismatches: 2, Indels: 20
0.70 0.03 0.27
Matches are distributed among these distances:
10 1 0.02
11 6 0.12
12 3 0.06
13 13 0.25
14 9 0.17
15 13 0.25
16 7 0.13
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (15 bp):
CTTTTCTTTTTTTCT
Found at i:80720391 original size:25 final size:24
Alignment explanation
Indices: 80720340--80720417 Score: 86
Period size: 24 Copynumber: 3.1 Consensus size: 24
80720330 TCTCCTTTGC
* *
80720340 TTTTCTTTTCTTTCT-CTTTTTTGT
1 TTTTCTCTTCTTTTTCCTTTTTT-T
80720364 TTTTCTCTTCTTTTTCCTTTTCTTT
1 TTTTCTCTTCTTTTTCCTTTT-TTT
80720389 TTTTCTCTTTGCTTTTTCTCTTTTTTT
1 TTTTCTC-TT-CTTTTTC-CTTTTTTT
80720416 TT
1 TT
80720418 GAAAGTGAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
24 13 0.28
25 13 0.28
26 4 0.09
27 12 0.26
28 5 0.11
ACGTcount: A:0.00, C:0.19, G:0.03, T:0.78
Consensus pattern (24 bp):
TTTTCTCTTCTTTTTCCTTTTTTT
Found at i:80726617 original size:126 final size:125
Alignment explanation
Indices: 80726457--80726699 Score: 432
Period size: 126 Copynumber: 1.9 Consensus size: 125
80726447 GTTTTAGCCT
*
80726457 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACTCAGTACGTTAAGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
*
80726522 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAGAGTGAACTGG
66 CTTCGAATTCTTTAAATACCGAACATT-CCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* *
80726583 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
*
80726648 CTTCGAATTCTTTGAATACCGAACATTCCTTTATTTTGAAAAATTTTGAGAG
66 CTTCGAATTCTTTAAATACCGAACATTCCTTTATTTTGAAAAATTTTGAGAG
80726700 AAGATCAATG
Statistics
Matches: 112, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
125 24 0.21
126 88 0.79
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (125 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
CTTCGAATTCTTTAAATACCGAACATTCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:80728993 original size:30 final size:29
Alignment explanation
Indices: 80728921--80728985 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
80728911 TGACGAGATT
* *
80728921 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
80728950 GGCACTAAGTGTGCATGCTGGAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG-AAAAATAC
80728980 GGCACT
1 GGCACT
80728986 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:80736882 original size:30 final size:29
Alignment explanation
Indices: 80736810--80736874 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
80736800 TGACGAGATT
* *
80736810 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
80736839 GGCACTAAGTGTGCATGCTGGAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG-AAAAATAC
80736869 GGCACT
1 GGCACT
80736875 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:80738518 original size:12 final size:12
Alignment explanation
Indices: 80738486--80738545 Score: 61
Period size: 12 Copynumber: 5.1 Consensus size: 12
80738476 TATGTGTATT
*
80738486 CTCTAAAAAATTC
1 CTCTCAAAAA-TC
80738499 CT-TCAAAAATC
1 CTCTCAAAAATC
80738510 CTCT-AAAAATC
1 CTCTCAAAAATC
*
80738521 CTCTCCAAAATC
1 CTCTCAAAAATC
* *
80738533 CTCCCCAAAATC
1 CTCTCAAAAATC
80738545 C
1 C
80738546 CCCCCATACA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
11 15 0.36
12 25 0.60
13 2 0.05
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (12 bp):
CTCTCAAAAATC
Found at i:80738530 original size:23 final size:24
Alignment explanation
Indices: 80738486--80738535 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 24
80738476 TATGTGTATT
80738486 CTCTAAAAAATTCCTTCAAAAATC
1 CTCTAAAAAATTCCTTCAAAAATC
*
80738510 CTCT-AAAAA-TCCTCTCCAAAATC
1 CTCTAAAAAATTCCT-TCAAAAATC
80738533 CTC
1 CTC
80738536 CCCAAAATCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 16 0.67
24 4 0.17
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (24 bp):
CTCTAAAAAATTCCTTCAAAAATC
Found at i:80738550 original size:12 final size:12
Alignment explanation
Indices: 80738515--80738551 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
80738505 AAATCCTCTA
*
80738515 AAAATCCTCTCC
1 AAAATCCTCCCC
80738527 AAAATCCTCCCC
1 AAAATCCTCCCC
*
80738539 AAAATCCCCCCC
1 AAAATCCTCCCC
80738551 A
1 A
80738552 TACAATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.35, C:0.49, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATCCTCCCC
Found at i:80738629 original size:18 final size:18
Alignment explanation
Indices: 80738606--80738678 Score: 78
Period size: 18 Copynumber: 4.0 Consensus size: 18
80738596 ATAACAAGTA
80738606 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
80738624 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
80738642 ATGGT-TTAGTAGGGTA-TGG
1 -GGGTGAT-GGA-GGTAGTGG
80738661 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
80738679 ATGGTTTAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
17 4 0.09
18 27 0.61
19 9 0.20
20 4 0.09
ACGTcount: A:0.18, C:0.00, G:0.56, T:0.26
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:80738671 original size:37 final size:37
Alignment explanation
Indices: 80738616--80738698 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
80738606 GGGTGATGGA
80738616 GGTAGTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAG
1 GGTA-TGGGGGTGATGGAGGTAGTGGATGGTTTAGTAG
80738654 GGTATGGGGGTGATGGAGGTAGTGGATGGTTTAGTAG
1 GGTATGGGGGTGATGGAGGTAGTGGATGGTTTAGTAG
80738691 GGTGATGG
1 GGT-ATGG
80738699 AGTTAGTGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
37 36 0.82
38 8 0.18
ACGTcount: A:0.18, C:0.00, G:0.53, T:0.29
Consensus pattern (37 bp):
GGTATGGGGGTGATGGAGGTAGTGGATGGTTTAGTAG
Found at i:80738714 original size:29 final size:29
Alignment explanation
Indices: 80738661--80738723 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
80738651 TAGGGTATGG
*
80738661 GGGTGATGGAGGTAGTGGATGGTTTAGTA
1 GGGTGATGGAGGTAGTGGATAGTTTAGTA
* *
80738690 GGGTGATGGAGTTAGTGG-TCAGTTTAGTG
1 GGGTGATGGAGGTAGTGGAT-AGTTTAGTA
80738719 GGGTG
1 GGGTG
80738724 TTTAATTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.17, C:0.02, G:0.49, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGATAGTTTAGTA
Found at i:80739435 original size:2 final size:2
Alignment explanation
Indices: 80739428--80739460 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
80739418 ATAATTATTC
80739428 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80739461 TAGTTCCCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80740779 original size:27 final size:26
Alignment explanation
Indices: 80740735--80740787 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
80740725 CCGTGTTTTG
* *
80740735 AACAGTAAAAAGGAAAAAAATGTCAT
1 AACAGTAAAAAGAAAAAAAATCTCAT
80740761 AACAGTAAAAAGAAAAAAAAATCTCAT
1 AACAGTAAAAAG-AAAAAAAATCTCAT
80740788 TCTTGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.64, C:0.09, G:0.11, T:0.15
Consensus pattern (26 bp):
AACAGTAAAAAGAAAAAAAATCTCAT
Found at i:80750915 original size:18 final size:18
Alignment explanation
Indices: 80750892--80750936 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
80750882 TAGTGTGGAA
80750892 AACCCTAGTGTGCAACCC
1 AACCCTAGTGTGCAACCC
* *
80750910 AACCCTAGTGTGCCACCT
1 AACCCTAGTGTGCAACCC
80750928 AACCCTAGT
1 AACCCTAGT
80750937 ATATAATCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.27, C:0.38, G:0.16, T:0.20
Consensus pattern (18 bp):
AACCCTAGTGTGCAACCC
Found at i:80752648 original size:21 final size:21
Alignment explanation
Indices: 80752624--80752663 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
80752614 TCATCAATTC
80752624 TAGCATAAAGTATCGATTCCT
1 TAGCATAAAGTATCGATTCCT
80752645 TAGCATAAAGTATCGATTC
1 TAGCATAAAGTATCGATTC
80752664 TTGATCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
TAGCATAAAGTATCGATTCCT
Found at i:80756005 original size:79 final size:77
Alignment explanation
Indices: 80755808--80756013 Score: 245
Period size: 77 Copynumber: 2.6 Consensus size: 77
80755798 GAATAAGTAG
* *
80755808 CAATCAATCTAACATGTTCAGATATCGTATATTCTTCATCAACAAAGTAATGTAGAAGATCATAT
1 CAATCAATCTAACATATTCAGATATCGTATATTCTTCATCAACAAAGTAATGTAGAAGATCATAA
*
80755873 CAGAATCAATAA
66 CAAAATCAATAA
* * *
80755885 CAATTAATCTAACATATTCAGATATCGTATAATCCTT-ATCAACAAAGTAATGTA-AATGATTAT
1 CAATCAATCTAACATATTCAGATATCGTAT-ATTCTTCATCAACAAAGTAATGTAGAA-GATCAT
*
80755948 AAACTAAAATCACTAA
64 -AAC-AAAATCAATAA
* * *** *
80755964 CAATCAATCTAACATAATCAAATATAACATATTTTTCATCAACAAAGTAA
1 CAATCAATCTAACATATTCAGATATCGTATATTCTTCATCAACAAAGTAA
80756014 CACGGAGGCG
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
76 2 0.02
77 50 0.46
78 11 0.10
79 46 0.42
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.31
Consensus pattern (77 bp):
CAATCAATCTAACATATTCAGATATCGTATATTCTTCATCAACAAAGTAATGTAGAAGATCATAA
CAAAATCAATAA
Found at i:80766752 original size:49 final size:49
Alignment explanation
Indices: 80766590--80766764 Score: 159
Period size: 49 Copynumber: 3.7 Consensus size: 49
80766580 TCGGGACGTA
* *
80766590 AGCCAGTATAAGA-CATGTTTGGGACAT-GCATC-GGCTACG-AGATG-T
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCACCAGGCT-CGAAGATGAT
* * * * * *
80766635 -GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAGGGT-TATG-TGAG
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCA-C--CAGGCTCGAAGATGAT
* * *
80766684 AGCTAGCGTAAGACCATGTTTGGGACATGGCACCAGCCTCGAAGATGAT
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCACCAGGCTCGAAGATGAT
80766733 AGCCAGTGTAAGACCATGTTTGGGACATGGCA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCA
80766765 TCGGTACTTT
Statistics
Matches: 100, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
44 10 0.10
45 13 0.13
46 3 0.03
47 4 0.04
48 4 0.04
49 36 0.36
50 30 0.30
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (49 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGGCACCAGGCTCGAAGATGAT
Found at i:80772326 original size:14 final size:14
Alignment explanation
Indices: 80772307--80772345 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
80772297 TTGTTTTATT
* *
80772307 GAAAATGGTTTCTG
1 GAAAATGATTTCTA
80772321 GAAAATGATTTCTA
1 GAAAATGATTTCTA
80772335 GAAAATGATTT
1 GAAAATGATTT
80772346 TTTTTGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (14 bp):
GAAAATGATTTCTA
Found at i:80791779 original size:18 final size:17
Alignment explanation
Indices: 80791743--80791785 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
80791733 GATCGACTAC
80791743 CTTTA-TTTTTTTTGAA
1 CTTTATTTTTTTTTGAA
* *
80791759 CTTTGTTTTTTTGTTGTA
1 CTTTATTTTTTT-TTGAA
80791777 CTTTATTTT
1 CTTTATTTT
80791786 CCTCTTCTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 4 0.18
17 6 0.27
18 12 0.55
ACGTcount: A:0.12, C:0.07, G:0.09, T:0.72
Consensus pattern (17 bp):
CTTTATTTTTTTTTGAA
Found at i:80793447 original size:2 final size:2
Alignment explanation
Indices: 80793440--80793468 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80793430 TCCATGGTTT
80793440 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80793469 TTTTTTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80794153 original size:94 final size:92
Alignment explanation
Indices: 80794055--80794683 Score: 476
Period size: 94 Copynumber: 6.7 Consensus size: 92
80794045 ATTCCAACCT
* * *
80794055 ACTGCAACTTCAAGGGTATAGGATTTGTAGCTTCATTTTGCTCTACTGCAACTTCATGGAGATAA
1 ACTGCAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCA-GGAGATAA
* ** * *
80794120 GATTCACTATGGTAGCTTCGATCCAATCC
65 GATTGA-TATTATAACTTCGATCCGATCC
* * ** * * * * *
80794149 ACTGCATCTTCAAGGTTATAATATTTGTAGCTTCATCTTACTCTAATGCAACTTTAGGGAGACAA
1 ACTGCAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCA-GGAGATAA
* *
80794214 TATTTGATATTATAGCATT-GATCCGATCC
65 GA-TTGATATTATAAC-TTCGATCCGATCC
* * * *
80794243 ACTGTATCTT-TAGAGATATAGGA-TT-TACGACTTCATCTTGCACCACTGCAACTTCAAGGAGA
1 ACTGCAACTTCAAG-GATATAGGATTTGTA-G-CTTCATCTTGCTCCACTGCAACTTC-AGGAGA
*
80794305 TAAGATTTGGTA--ATAACTTCGATCCGATCC
62 TAAGA-TTGATATTATAACTTCGATCCGATCC
* * * *
80794335 ACTGCATCTTCAGGGATATAGGATTTG--GCTTCATCTTGCTCCGCTACAACTTCAGAGAGATAA
1 ACTGCAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAG-GAGATAA
* *
80794398 GATTTGATATTTTAACTTTGATCCGATCC
65 GA-TTGATATTATAACTTCGATCCGATCC
* ** * *
80794427 A-TTCAATCTTCAAGGATATAGGATTCATAGCTTTATCTTGCTCCACTGCAACTTTAGTGAGATA
1 ACTGCAA-CTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAG-GAGATA
* * * *
80794491 AGATTTGCTA-TAGTAATTTC-ATTCTGACCC
64 AGA-TTGATATTA-TAACTTCGA-TCCGATCC
* * * *
80794521 ACTTCAACCTCAAGGATATAGGATTTATAGCTTCATCTTGCTCCACTGTAACTTCAGGGAGATAA
1 ACTGCAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCA-GGAGATAA
** * *
80794586 GATTTGCA-A-TAGTAA-TTTTATTCTGACCC
65 GA-TTG-ATATTA-TAACTTCGA-TCCGATCC
* * * * * *
80794615 ACTGCAACTTCAGGGAGATAGGATTTTTAGCTTCATCTTGCTCCACTACAACTTTAAGGAGATTA
1 ACTGCAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAAC-TTCAGGAGATAA
80794680 GATT
65 GATT
80794684 TGCCATTTCA
Statistics
Matches: 442, Mismatches: 70, Indels: 47
0.79 0.13 0.08
Matches are distributed among these distances:
89 2 0.00
90 37 0.08
91 6 0.01
92 68 0.15
93 14 0.03
94 300 0.68
95 15 0.03
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (92 bp):
ACTGCAACTTCAAGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGAGATAAG
ATTGATATTATAACTTCGATCCGATCC
Found at i:80794590 original size:44 final size:44
Alignment explanation
Indices: 80794273--80794684 Score: 165
Period size: 50 Copynumber: 8.9 Consensus size: 44
80794263 GGATTTACGA
* * *
80794273 CTTCATCTTGCACCACTGCAACTTCAAGGAGATAAGATTTGGTAATAA
1 CTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGA-TT--T-ATAG
* * * * * *
80794321 CTTCGATC-CGATCCACTGCATCTTCAGGGATATAGGA-TT-TGG
1 CTTC-ATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTATAG
* * *
80794363 CTTCATCTTGCTCCGCTACAACTTCAGAGAGATAAGATTTGATA-
1 CTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTT-ATAG
* * * * * * * * *
80794407 TTTTAACTTTGATCCGATCCATTCAATCTTCAAGGATATAGGATTCATAG
1 CTTCATC-TTGCTCC-A--C-TGCAA-CTTCAGGGAGATAAGATTTATAG
* * *
80794457 CTTTATCTTGCTCCACTGCAACTTTAGTGAGATAAGATTTGCTATAG
1 CTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGA-TT--TATAG
* * * * * *
80794504 TAATTTCAT-TCTGAC-CCACTTCAACCTCAAGGATATAGGATTTATAG
1 ---CTTCATCT-TG-CTCCACTGCAACTTCAGGGAGATAAGATTTATAG
*
80794551 CTTCATCTTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCAATAG
1 CTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTT---ATAG
* * * *
80794598 TAATTTTAT-TCTGAC-CCACTGCAACTTCAGGGAGATAGGATTTTTAG
1 ---CTTCATCT-TG-CTCCACTGCAACTTCAGGGAGATAAGATTTATAG
* * * *
80794645 CTTCATCTTGCTCCACTACAACTTTAAGGAGATTAGATTT
1 CTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTT
80794685 GCCATTTCAA
Statistics
Matches: 265, Mismatches: 67, Indels: 68
0.66 0.17 0.17
Matches are distributed among these distances:
41 3 0.01
42 26 0.10
43 4 0.02
44 74 0.28
45 15 0.06
46 2 0.01
47 16 0.06
48 28 0.11
49 20 0.08
50 75 0.28
51 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (44 bp):
CTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTTATAG
Found at i:80794959 original size:13 final size:13
Alignment explanation
Indices: 80794941--80794967 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80794931 AATCCTATTG
80794941 AGTCTATTTTTAC
1 AGTCTATTTTTAC
80794954 AGTCTATTTTTAC
1 AGTCTATTTTTAC
80794967 A
1 A
80794968 TATAAGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (13 bp):
AGTCTATTTTTAC
Found at i:80796175 original size:64 final size:64
Alignment explanation
Indices: 80796048--80796176 Score: 150
Period size: 64 Copynumber: 2.0 Consensus size: 64
80796038 CGAGCATCTC
* * * * * * * *
80796048 GATTGGTATTGATCCTGCATGTGTTGCGGACATACCGCAGCTCTTTGTGAGCATCCTGTTATAT
1 GATTGGTATTGATCCTGCATATATTGCGGACATACCACAACTCTTTATAAGCATCCCGATATAT
* * * *
80796112 GATTTGTATTGATCTTGCATATATTGTGGACATACCACAACTCTTTATAAGCGTCCCGATATAT
1 GATTGGTATTGATCCTGCATATATTGCGGACATACCACAACTCTTTATAAGCATCCCGATATAT
80796176 G
1 G
80796177 GCTCTTCATG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.36
Consensus pattern (64 bp):
GATTGGTATTGATCCTGCATATATTGCGGACATACCACAACTCTTTATAAGCATCCCGATATAT
Found at i:80811645 original size:45 final size:45
Alignment explanation
Indices: 80811595--80811763 Score: 195
Period size: 45 Copynumber: 3.7 Consensus size: 45
80811585 TGGTTGAGCA
80811595 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
* *
80811640 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCGAA-T--G
*
80811685 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATG
* *
80811733 -CCCAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
80811764 TAGGGGCGGG
Statistics
Matches: 106, Mismatches: 7, Indels: 23
0.78 0.05 0.17
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
45 57 0.54
47 28 0.26
48 1 0.01
49 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATG
Found at i:80811749 original size:92 final size:92
Alignment explanation
Indices: 80811592--80811760 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
80811582 GGATGGTTGA
* *
80811592 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCCAACTCGTTGAGTT
80811657 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
80811684 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGTCCCAACTCGTTGAGT
80811748 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
80811761 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 60 0.82
93 13 0.18
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCCAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80819274 original size:47 final size:46
Alignment explanation
Indices: 80819157--80819329 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
80819147 GGATGGTTGA
80819157 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
80819204 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
80819247 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
80819297 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
80819330 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:80819326 original size:93 final size:92
Alignment explanation
Indices: 80819157--80819326 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
80819147 GGATGGTTGA
* *
80819157 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
80819222 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
80819249 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
80819314 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
80819327 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80825418 original size:46 final size:46
Alignment explanation
Indices: 80825368--80825540 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
80825358 TGGTTGAGCA
80825368 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80825414 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80825459 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80825507 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80825541 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80825524 original size:93 final size:93
Alignment explanation
Indices: 80825365--80825535 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80825355 GGATGGTTGA
* *
80825365 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80825430 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80825458 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80825523 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80825536 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80834656 original size:40 final size:39
Alignment explanation
Indices: 80834491--80834674 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80834481 AAATTGAATG
* * *
80834491 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80834531 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80834571 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80834611 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80834650 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80834675 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80834699 original size:80 final size:81
Alignment explanation
Indices: 80834531--80834719 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80834521 GCTGGAAATT
* * * *
80834531 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80834596 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80834612 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80834675 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80834691 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80834720 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Done.