Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 280 of 427
Found at i:80842774 original size:40 final size:39
Alignment explanation
Indices: 80842609--80842792 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
80842599 AAATTGAATG
* * *
80842609 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
80842649 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
80842689 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
80842729 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
80842768 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
80842793 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:80842817 original size:80 final size:81
Alignment explanation
Indices: 80842649--80842837 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
80842639 GCTGGAAATT
* * * *
80842649 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
80842714 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
80842730 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
80842793 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
80842809 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
80842838 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:80845975 original size:41 final size:41
Alignment explanation
Indices: 80845911--80846047 Score: 118
Period size: 41 Copynumber: 3.4 Consensus size: 41
80845901 ACGCCATAAT
* * *
80845911 AGGTAAAACAATAGCGGCATTTATGAGAAAATCACCGCAAA
1 AGGTAAAGCAGTAGCGACATTTATGAGAAAATCACCGCAAA
* * ** *
80845952 AGGTCAAGTAGTAGC-AGTGTTTATGAGTAAAAT-GCCGCAAA
1 AGGTAAAGCAGTAGCGA-CATTTATGAG-AAAATCACCGCAAA
* * * *
80845993 AAGAAAAGCATTAGCGACATTTATGAGAAAAACACCGCAAA
1 AGGTAAAGCAGTAGCGACATTTATGAGAAAATCACCGCAAA
*
80846034 AGGT-AAGCAATAGC
1 AGGTAAAGCAGTAGC
80846048 TTATTGATAA
Statistics
Matches: 72, Mismatches: 20, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
40 13 0.18
41 53 0.74
42 6 0.08
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (41 bp):
AGGTAAAGCAGTAGCGACATTTATGAGAAAATCACCGCAAA
Found at i:80846237 original size:14 final size:14
Alignment explanation
Indices: 80846200--80846230 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
80846190 CCTTATTTTT
80846200 TCCCCAAATCGAAA
1 TCCCCAAATCGAAA
*
80846214 TCCCCTAATCGAAA
1 TCCCCAAATCGAAA
80846228 TCC
1 TCC
80846231 TGAAATCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.39, G:0.06, T:0.19
Consensus pattern (14 bp):
TCCCCAAATCGAAA
Found at i:80846403 original size:27 final size:27
Alignment explanation
Indices: 80846373--80846428 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
80846363 GCTACAAGAT
80846373 TTAATGGATGCTTAGCCCTAAAATTGC
1 TTAATGGATGCTTAGCCCTAAAATTGC
*
80846400 TTAATGGATGTTTAGCCCTAAAATTGC
1 TTAATGGATGCTTAGCCCTAAAATTGC
80846427 TT
1 TT
80846429 GTTCTCTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (27 bp):
TTAATGGATGCTTAGCCCTAAAATTGC
Found at i:80850434 original size:9 final size:9
Alignment explanation
Indices: 80850420--80850454 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
80850410 TTTATTTTTA
*
80850420 ATTATTGAT
1 ATTATTAAT
80850429 ATTATTAAT
1 ATTATTAAT
80850438 ATTATTAAT
1 ATTATTAAT
80850447 ATTATTAA
1 ATTATTAA
80850455 GTGATTATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (9 bp):
ATTATTAAT
Found at i:80855071 original size:58 final size:58
Alignment explanation
Indices: 80855005--80855168 Score: 310
Period size: 58 Copynumber: 2.8 Consensus size: 58
80854995 GTCGGTTCAA
*
80855005 CAAAAACTTCGAAGGATGAGGCCAGATATACTGTTGAAAATAAAATAAAATAAGAGGT
1 CAAAAACTTCGAAGGATGAGGCCAGACATACTGTTGAAAATAAAATAAAATAAGAGGT
80855063 CAAAAACTTCGAAGGATGAGGCCAGACATACTGTTGAAAATAAAATAAAATAAGAGGT
1 CAAAAACTTCGAAGGATGAGGCCAGACATACTGTTGAAAATAAAATAAAATAAGAGGT
*
80855121 CAAAAACTTCGAAGGATGAGGCCAGACATACTATTGAAAATAAAATAA
1 CAAAAACTTCGAAGGATGAGGCCAGACATACTGTTGAAAATAAAATAA
80855169 GAGGTCAAGA
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 104 1.00
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.20
Consensus pattern (58 bp):
CAAAAACTTCGAAGGATGAGGCCAGACATACTGTTGAAAATAAAATAAAATAAGAGGT
Found at i:80858846 original size:42 final size:42
Alignment explanation
Indices: 80858758--80858911 Score: 141
Period size: 42 Copynumber: 3.7 Consensus size: 42
80858748 CTGAGACTAT
* * * ** *
80858758 GTGTAAGACCATATCTAGGATATGGCATCAACGTGAAACTTT-
1 GTGTAAGACCATATTTGGGATATGGCATCGATATGAGA-TTTC
*
80858800 GTGTAAGACCATATTTGCGATATGGCATCGATATGAGATTTC
1 GTGTAAGACCATATTTGGGATATGGCATCGATATGAGATTTC
** * * * **
80858842 GTGT-AGACCATAGCTGGGCTATTGCCATCGATATAAGATCCC
1 GTGTAAGACCATATTTGGGATA-TGGCATCGATATGAGATTTC
*
80858884 ATGTAAGACCATATTTGGGATATGGCAT
1 GTGTAAGACCATATTTGGGATATGGCAT
80858912 TGCTATGATA
Statistics
Matches: 89, Mismatches: 20, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
41 16 0.18
42 59 0.66
43 14 0.16
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATTTGGGATATGGCATCGATATGAGATTTC
Found at i:80862476 original size:13 final size:14
Alignment explanation
Indices: 80862452--80862480 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80862442 TTCAACCAAA
80862452 TAAGGTCACACGCC
1 TAAGGTCACACGCC
80862466 TAAGG-CACACGCC
1 TAAGGTCACACGCC
80862479 TA
1 TA
80862481 TGTCCTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.34, G:0.21, T:0.14
Consensus pattern (14 bp):
TAAGGTCACACGCC
Found at i:80869295 original size:42 final size:42
Alignment explanation
Indices: 80869234--80869351 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 42
80869224 CTGAGACTAT
* *
80869234 GTGTAAGACCATATTTGGGATATGGCATCAATTTAAAACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCAATATAAAACTTC
* * * * *
80869276 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTT
1 GTGTAAGACCATATCTGGGATATGGCATCAATATAAAACTTC
* * *
80869318 GTGTAAAACCATAGCTGGGCTATTGGCATCAATA
1 GTGTAAGACCATATCTGGGATA-TGGCATCAATA
80869352 CGAGATCCCA
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
42 54 0.84
43 10 0.16
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCAATATAAAACTTC
Found at i:80871891 original size:44 final size:44
Alignment explanation
Indices: 80871828--80872406 Score: 199
Period size: 44 Copynumber: 12.7 Consensus size: 44
80871818 ATTACAATAG
* *
80871828 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * * * * *
80871872 CAAATCCTATATCCCTGAAGATGCAGTGGATC-AGATCAAAGTTAATA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGAT-GAAG---CTA
* * * *
80871919 GCGAATCTTATCTCCCTGAAGTTGCAGTGGACCAAGATGAAG-TAA
1 -CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGATGAAGCT-A
* * * * * * *
80871964 TAAATCCTATATCCCTGAAGATATAGTAGACGGATCGAAG-TTAA--TA
1 CAAATCTTATATCCCTAAAG-T-T-GCAG-TGGAGC-AAGATGAAGCTA
* * * *
80872010 GCGAATCTTATCTTCCTAAAGTTGTAGTGGAGCAAGATGAAGCTA
1 -CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * * * * * *** *
80872055 TAAATCCTATATCCATGAAGATACAGTGGA-TTGGATCGAAGTTAATA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGAT-GAAG---CTA
* * * * * *
80872102 GCAAATCTTATCTCTCTAAAGTTGCAGTGGAGTACGATAAAACTA
1 -CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * * * * *
80872147 TAAATCCTATATCCCTAAAGATACAATGGA-CAAGATCGAAGTTAATA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGAT-GAAG---CTA
* * * *
80872194 GCGAATCTTATCTCCCTAAAGTTGTAGTGGAGCAAGATAAAGCTA
1 -CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * * *
80872239 TAAATCCTATATCCCTAAAGATGCAATGGATCGAATCAAAGTTAT-AA--TAA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGA--G---C-AAG--ATGAAGCT-A
* * * * * *
80872289 CAAATATTTTCTCCCTAAAGTTACAGTGAAGCAAGATAAAGCTA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTA
* * ***
80872333 CAAATCTTGTACCCCTAAAGTTGCAGTGG-GTTGGAATGAAGCTA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAG-ATGAAGCTA
* *
80872377 CAAATCCTATATCCCTAAAGTTGTAGTGGA
1 CAAATCTTATATCCCTAAAGTTGCAGTGGA
80872407 ATGGATTGAA
Statistics
Matches: 385, Mismatches: 108, Indels: 83
0.67 0.19 0.14
Matches are distributed among these distances:
42 5 0.01
43 22 0.06
44 184 0.48
45 11 0.03
46 4 0.01
47 24 0.06
48 87 0.23
49 19 0.05
50 25 0.06
51 2 0.01
52 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (44 bp):
CAAATCTTATATCCCTAAAGTTGCAGTGGAGCAAGATGAAGCTA
Found at i:80871946 original size:92 final size:92
Alignment explanation
Indices: 80871684--80872361 Score: 655
Period size: 92 Copynumber: 7.3 Consensus size: 92
80871674 AGTGAAACCT
* * * * * * *
80871684 CAAATCCTATACCCCTAAAGTTACAGTGGGTCAGATTGAAGCTATCATAGCAAGTCTTATCTCTC
1 CAAATCCTATATCCCTAAAGATACAGTGGATCAGATCGAAG-T-TAATAGCAAATCTTATCTCCC
* * * *
80871749 TGAAGTTGCAATGAAGCAAGACAAAGCTA
64 TAAAGTTGCAGTGGAGCAAGATAAAGCTA
** * * ** * *
80871778 CAAATCCTATATCCCTAAATTTGCAATATAAT-AGATTGAAATTACAATAGCAAATCTTATCTCC
1 CAAATCCTATATCCCTAAAGATACAGT-GGATCAGATCGAAGTT--AATAGCAAATCTTATCTCC
* *
80871842 CTGAAGTTGCAGTGGAGCAAGATGAAGCTA
63 CTAAAGTTGCAGTGGAGCAAGATAAAGCTA
* * * * *
80871872 CAAATCCTATATCCCTGAAGATGCAGTGGATCAGATCAAAGTTAATAGCGAATCTTATCTCCCTG
1 CAAATCCTATATCCCTAAAGATACAGTGGATCAGATCGAAGTTAATAGCAAATCTTATCTCCCTA
* *
80871937 AAGTTGCAGTGGACCAAGATGAAG-TAA
66 AAGTTGCAGTGGAGCAAGATAAAGCT-A
* * * * * * *
80871964 TAAATCCTATATCCCTGAAGATATAGTAGA-CGGATCGAAGTTAATAGCGAATCTTATCTTCCTA
1 CAAATCCTATATCCCTAAAGATACAGTGGATCAGATCGAAGTTAATAGCAAATCTTATCTCCCTA
* *
80872028 AAGTTGTAGTGGAGCAAGATGAAGCTA
66 AAGTTGCAGTGGAGCAAGATAAAGCTA
* * * ** *
80872055 TAAATCCTATATCCATGAAGATACAGTGGATTGGATCGAAGTTAATAGCAAATCTTATCTCTCTA
1 CAAATCCTATATCCCTAAAGATACAGTGGATCAGATCGAAGTTAATAGCAAATCTTATCTCCCTA
* * *
80872120 AAGTTGCAGTGGAGTACGATAAAACTA
66 AAGTTGCAGTGGAGCAAGATAAAGCTA
* * *
80872147 TAAATCCTATATCCCTAAAGATACAATGGA-CAAGATCGAAGTTAATAGCGAATCTTATCTCCCT
1 CAAATCCTATATCCCTAAAGATACAGTGGATC-AGATCGAAGTTAATAGCAAATCTTATCTCCCT
*
80872211 AAAGTTGTAGTGGAGCAAGATAAAGCTA
65 AAAGTTGCAGTGGAGCAAGATAAAGCTA
* * * * * * *
80872239 TAAATCCTATATCCCTAAAGATGCAATGGATC-GAATCAAAGTTATAATAACAAATATTTTCTCC
1 CAAATCCTATATCCCTAAAGATACAGTGGATCAG-ATCGAAG-T-TAATAGCAAATCTTATCTCC
* *
80872303 CTAAAGTTACAGTGAAGCAAGATAAAGCTA
63 CTAAAGTTGCAGTGGAGCAAGATAAAGCTA
* * * * *
80872333 CAAATCTTGTACCCCTAAAGTTGCAGTGG
1 CAAATCCTATATCCCTAAAGATACAGTGG
80872362 GTTGGAATGA
Statistics
Matches: 498, Mismatches: 74, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
91 82 0.16
92 240 0.48
93 5 0.01
94 170 0.34
95 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (92 bp):
CAAATCCTATATCCCTAAAGATACAGTGGATCAGATCGAAGTTAATAGCAAATCTTATCTCCCTA
AAGTTGCAGTGGAGCAAGATAAAGCTA
Found at i:80872062 original size:183 final size:183
Alignment explanation
Indices: 80871730--80872352 Score: 685
Period size: 183 Copynumber: 3.4 Consensus size: 183
80871720 TGAAGCTATC
* * * * * * * * *
80871730 ATAGCAAGTCTTATCTCTCTGAAGTTGCAATGAAGCAAGACAAAGCTACAAATCCTATATCCCTA
1 ATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGACCAAGATAAAACTATAAATCCTATATCCCTA
** * * * * * * *
80871795 AATTTGCAATATA-ATAGATTGAAATTACAATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
66 AAGATACAATAGACA-AGATCGAAGTT--AATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAG
*
80871859 CAAGATGAAGCTACAAATCCTATATCCCTGAAGATGCAGTGGATCAGATCAAAGTTA
128 CAAGATGAAGCTATAAATCCTATATCCCTGAAGATGCAGTGGATC-GATCAAAGTTA
* * * *
80871916 ATAGCGAATCTTATCTCCCTGAAGTTGCAGTGGACCAAGAT-GAAGTAATAAATCCTATATCCCT
1 ATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGACCAAGATAAAACT-ATAAATCCTATATCCCT
* * * * *
80871980 GAAGATATAGTAGAC-GGATCGAAGTTAATAGCGAATCTTATCTTCCTAAAGTTGTAGTGGAGCA
65 AAAGATACAATAGACAAGATCGAAGTTAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGCA
* * * *
80872044 AGATGAAGCTATAAATCCTATATCCATGAAGATACAGTGGATTGGATCGAAGTTA
130 AGATGAAGCTATAAATCCTATATCCCTGAAGATGCAGTGGA-TCGATCAAAGTTA
* ** *
80872099 ATAGCAAATCTTATCTCTCTAAAGTTGCAGTGGAGTACGATAAAACTATAAATCCTATATCCCTA
1 ATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGACCAAGATAAAACTATAAATCCTATATCCCTA
*
80872164 AAGATACAATGGACAAGATCGAAGTTAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGCAA
66 AAGATACAATAGACAAGATCGAAGTTAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGCAA
* * *
80872229 GATAAAGCTATAAATCCTATATCCCTAAAGATGCAATGGATCGAATCAAAGTTATA
131 GATGAAGCTATAAATCCTATATCCCTGAAGATGCAGTGGATCG-ATCAAAG-T-TA
* * * * * * * * * * *
80872285 ATAACAAATATTTTCTCCCTAAAGTTACAGTGAAGCAAGATAAAGCTACAAATCTTGTACCCCTA
1 ATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGACCAAGATAAAACTATAAATCCTATATCCCTA
80872350 AAG
66 AAG
80872353 TTGCAGTGGG
Statistics
Matches: 365, Mismatches: 64, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
183 147 0.40
184 93 0.25
185 11 0.03
186 114 0.31
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (183 bp):
ATAGCAAATCTTATCTCCCTAAAGTTGCAGTGGACCAAGATAAAACTATAAATCCTATATCCCTA
AAGATACAATAGACAAGATCGAAGTTAATAGCGAATCTTATCTCCCTAAAGTTGTAGTGGAGCAA
GATGAAGCTATAAATCCTATATCCCTGAAGATGCAGTGGATCGATCAAAGTTA
Found at i:80872423 original size:44 final size:44
Alignment explanation
Indices: 80872330--80872423 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
80872320 CAAGATAAAG
* * ** *
80872330 CTACAAATCTTGTACCCCTAAAGTTGCAGTGGGTTGGAATGAAG
1 CTACAAATCCTATACCCCTAAAGTTGCAGTGGAATGGAATGAAA
* * *
80872374 CTACAAATCCTATATCCCTAAAGTTGTAGTGGAATGGATTGAAA
1 CTACAAATCCTATACCCCTAAAGTTGCAGTGGAATGGAATGAAA
*
80872418 TTACAA
1 CTACAA
80872424 CAACAAATCT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (44 bp):
CTACAAATCCTATACCCCTAAAGTTGCAGTGGAATGGAATGAAA
Found at i:80876244 original size:15 final size:14
Alignment explanation
Indices: 80876221--80876259 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
80876211 TTTAAATTTC
80876221 AAAAAAAATATAAA
1 AAAAAAAATATAAA
*
80876235 AAATAAAAATA-AAC
1 AAA-AAAAATATAAA
80876249 AAAAAAAATAT
1 AAAAAAAATAT
80876260 TCAAGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 7 0.32
14 8 0.36
15 7 0.32
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAAAAAATATAAA
Found at i:80877456 original size:25 final size:25
Alignment explanation
Indices: 80877435--80877487 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
80877425 CAGCTCGTAT
80877435 GAGCTT-ACTATTATTCAACTCGGAG
1 GAGCTTAAC-ATTATTCAACTCGGAG
*
80877460 GAGCTTAACATTATTCAGCTCGGAG
1 GAGCTTAACATTATTCAACTCGGAG
80877485 GAG
1 GAG
80877488 TTTACCGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (25 bp):
GAGCTTAACATTATTCAACTCGGAG
Found at i:80884749 original size:25 final size:25
Alignment explanation
Indices: 80884711--80884769 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
80884701 CAGCTCGTAT
* * **
80884711 GAGCTTATCGTTATTCAACTCGGAG
1 GAGCTTACCATTATTCAACTCAAAG
* *
80884736 GAGCTTACCATTATTTAGCTCAAAG
1 GAGCTTACCATTATTCAACTCAAAG
80884761 GAGCTTACC
1 GAGCTTACC
80884770 GTTTACAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
GAGCTTACCATTATTCAACTCAAAG
Found at i:80887314 original size:40 final size:40
Alignment explanation
Indices: 80887269--80887434 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
80887259 CGGAATATAA
80887269 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
80887309 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
80887349 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
80887389 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAG-
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
80887427 CCGGATAT
1 CCGGATAT
80887435 CATTCAATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 8 0.07
39 5 0.05
40 95 0.88
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80888283 original size:17 final size:19
Alignment explanation
Indices: 80888260--80888305 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
80888250 AAGAAGCATG
80888260 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
80888278 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
80888296 AATCATGCTC
1 AATCATGCTC
80888306 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:80891197 original size:17 final size:19
Alignment explanation
Indices: 80891174--80891219 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
80891164 AAGAAGCATG
80891174 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
80891192 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
80891210 AATCATGCTC
1 AATCATGCTC
80891220 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:80892417 original size:22 final size:23
Alignment explanation
Indices: 80892388--80892436 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
80892378 AGGTTGCAAA
80892388 TTATTTTTTTAAAAGATTTTTTT
1 TTATTTTTTTAAAAGATTTTTTT
80892411 TTATTTTTTTAAAAGATTTTTTT
1 TTATTTTTTTAAAAGATTTTTTT
80892434 TTA
1 TTA
80892437 CTTATATAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (23 bp):
TTATTTTTTTAAAAGATTTTTTT
Found at i:80893088 original size:9 final size:9
Alignment explanation
Indices: 80893066--80893097 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
80893056 TTTGCTCCTT
80893066 TATT-TTTA
1 TATTATTTA
80893074 -ATTATTTA
1 TATTATTTA
80893082 TATTATTTA
1 TATTATTTA
80893091 TATTATT
1 TATTATT
80893098 AAGTGATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 3 0.14
8 4 0.18
9 15 0.68
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TATTATTTA
Found at i:80894231 original size:22 final size:19
Alignment explanation
Indices: 80894203--80894258 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 19
80894193 GTATTTTGTC
80894203 TTTTTTTTTTGTCACTGTAA
1 TTTTTTTTTTGTC-CTGTAA
* *
80894223 TTTGATTTTTTGGTTCTTGTAA
1 TTT--TTTTTTTG-TCCTGTAA
80894245 TTTTTTTTTTGTCC
1 TTTTTTTTTTGTCC
80894259 CTGTTGTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
19 2 0.07
20 10 0.34
22 15 0.52
23 2 0.07
ACGTcount: A:0.11, C:0.09, G:0.12, T:0.68
Consensus pattern (19 bp):
TTTTTTTTTTGTCCTGTAA
Found at i:80895638 original size:78 final size:78
Alignment explanation
Indices: 80895504--80895652 Score: 176
Period size: 78 Copynumber: 1.9 Consensus size: 78
80895494 GTTTGTAAAC
* * * * * * * * *
80895504 AGAAATCAGTTGAACAAATCTGTTTCAGGATTTTATTTCTGTTGTTCAGCAGAATTTGTTCGATT
1 AGAAATCAATTAAACAAATCTGTTTCAGGATTCTATTCCTGTTATTCAACAAAATTTATTC-AAT
80895569 TTCTATTTCCAAAT
65 TTCTATTTCCAAAT
*
80895583 AGAAATCAATTAAACAATTC-GTTTCAGGATTCTATTCCT-TTCATTCAACAAAATTTATTCAAT
1 AGAAATCAATTAAACAAATCTGTTTCAGGATTCTATTCCTGTT-ATTCAACAAAATTTATTCAAT
80895646 TTCTATT
65 TTCTATT
80895653 GTTAACAGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
77 11 0.19
78 31 0.53
79 17 0.29
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (78 bp):
AGAAATCAATTAAACAAATCTGTTTCAGGATTCTATTCCTGTTATTCAACAAAATTTATTCAATT
TCTATTTCCAAAT
Found at i:80908037 original size:21 final size:21
Alignment explanation
Indices: 80907997--80908037 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80907987 ACTGTGCTCA
* * *
80907997 AAGGTTTGACAGTCTTGATGC
1 AAGGTTCGACAGTATCGATGC
80908018 AAGGTTCGACAGTATCGATG
1 AAGGTTCGACAGTATCGATG
80908038 AGACTTTACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (21 bp):
AAGGTTCGACAGTATCGATGC
Found at i:80908137 original size:6 final size:6
Alignment explanation
Indices: 80908126--80908151 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
80908116 TTTAAGTCCA
80908126 TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
80908152 CCTTCATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:80909961 original size:28 final size:28
Alignment explanation
Indices: 80909916--80909970 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
80909906 TAGGCACTTC
*
80909916 CACACGGGTGATCCACACGCCCGTGTGA
1 CACACGGGTGATCCACACACCCGTGTGA
*
80909944 CACACGGGTAGA-CTACACACCCGTGTG
1 CACACGGGT-GATCCACACACCCGTGTG
80909971 TCATGGCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.24, C:0.35, G:0.27, T:0.15
Consensus pattern (28 bp):
CACACGGGTGATCCACACACCCGTGTGA
Found at i:80920752 original size:124 final size:125
Alignment explanation
Indices: 80920595--80920843 Score: 482
Period size: 125 Copynumber: 2.0 Consensus size: 125
80920585 TGGTTTCCAA
*
80920595 ATTCATGAAAGAACGAGTTGCCGTGGAATA-TTTTTCCGAATGTTATTAAGCATGTCGATAATAA
1 ATTCATGAAAGAACGAGTTGCCGTGGAATATTTTTTCCAAATGTTATTAAGCATGTCGATAATAA
80920659 ATTGAGTTTAGTTAAAGCAATTGTCCAAGTTTATTTATGTTATAATTATTGCAAATTGTG
66 ATTGAGTTTAGTTAAAGCAATTGTCCAAGTTTATTTATGTTATAATTATTGCAAATTGTG
80920719 ATTCATGAAAGAACGAGTTGCCGTGGAATATTTTTTCCAAATGTTATTAAGCATGTCGATAATAA
1 ATTCATGAAAGAACGAGTTGCCGTGGAATATTTTTTCCAAATGTTATTAAGCATGTCGATAATAA
80920784 ATTGAGTTTAGTTAAAGCAATTGTCCAAGTTTATTTATGTTATAATTATTGCAAATTGTG
66 ATTGAGTTTAGTTAAAGCAATTGTCCAAGTTTATTTATGTTATAATTATTGCAAATTGTG
80920844 TTTAATTTTG
Statistics
Matches: 123, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
124 30 0.24
125 93 0.76
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (125 bp):
ATTCATGAAAGAACGAGTTGCCGTGGAATATTTTTTCCAAATGTTATTAAGCATGTCGATAATAA
ATTGAGTTTAGTTAAAGCAATTGTCCAAGTTTATTTATGTTATAATTATTGCAAATTGTG
Found at i:80923057 original size:2 final size:2
Alignment explanation
Indices: 80923050--80923076 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80923040 TTTCAGATTT
80923050 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
80923077 TGTTATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80925890 original size:15 final size:17
Alignment explanation
Indices: 80925870--80925901 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
80925860 TTAGGAAACG
80925870 TACATAA-A-AAATATA
1 TACATAATATAAATATA
80925885 TACATAATATAAATATA
1 TACATAATATAAATATA
80925902 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:80926098 original size:21 final size:22
Alignment explanation
Indices: 80926074--80926130 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
80926064 ATATAGCTAA
80926074 ATATAATATAATA-ATAACAAT
1 ATATAATATAATAGATAACAAT
*
80926095 ATATAAAATAATAGTGATAACAAT
1 ATATAATATAATA--GATAACAAT
*
80926119 ATACATATATAA
1 ATATA-ATATAA
80926131 CATGATTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 12 0.41
24 12 0.41
25 5 0.17
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.32
Consensus pattern (22 bp):
ATATAATATAATAGATAACAAT
Found at i:80926136 original size:24 final size:24
Alignment explanation
Indices: 80926087--80926136 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
80926077 TAATATAATA
* *
80926087 ATAACAATATATAAAATAATAGTG
1 ATAACAATATACAAAATAACAGTG
*
80926111 ATAACAATATACATATATAACA-TG
1 ATAACAATATACA-AAATAACAGTG
80926135 AT
1 AT
80926137 TAATATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.30
Consensus pattern (24 bp):
ATAACAATATACAAAATAACAGTG
Found at i:80927662 original size:91 final size:91
Alignment explanation
Indices: 80927554--80927720 Score: 237
Period size: 91 Copynumber: 1.8 Consensus size: 91
80927544 AATAGACAAT
* * *
80927554 AAAAATAGAAATTGAAAATAGCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-CCTAAGGCTCAACTCACCTCTCGCAATACGA
80927618 GTCAATTTTTTTGAAAGGCAAAAATTG
65 GTCAATTTTTTTGAAAGGCAAAAATTG
* * **
80927645 AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATACGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAG
**
80927710 TTGATTTTTTT
66 TCAATTTTTTT
80927721 TTGACAACAG
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
90 2 0.03
91 64 0.97
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (91 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCTCTCGCAATACGAG
TCAATTTTTTTGAAAGGCAAAAATTG
Found at i:80928002 original size:75 final size:75
Alignment explanation
Indices: 80927813--80928053 Score: 274
Period size: 75 Copynumber: 3.2 Consensus size: 75
80927803 TATAAATTTA
* * * *
80927813 AAAG-CAGAAATTGAAATTAACTCAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTAACCTCTCGCAATATGAGT
80927876 TGA-TTTTTTG
65 TGATTTTTTTG
* * * * **
80927886 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTAACCTCTCGCAATATGAGTT
*
80927951 GATTTTTTTTT
66 GA-TTTTTTTG
* * *
80927962 ACA-ACAGAAACTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTAACCTCTCGCAATATGAGTT
80928026 GAATTTTTTTG
66 G-ATTTTTTTG
* * *
80928037 AAAAATATAAATTGAAA
1 AAAGACAGAAATTGAAA
80928054 AGCAGAAATT
Statistics
Matches: 137, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
73 4 0.03
74 50 0.36
75 64 0.47
76 19 0.14
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (75 bp):
AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTAACCTCTCGCAATATGAGTT
GATTTTTTTG
Found at i:80928103 original size:239 final size:237
Alignment explanation
Indices: 80927642--80929065 Score: 1469
Period size: 239 Copynumber: 6.0 Consensus size: 237
80927632 AAGGCAAAAA
* * * * * *
80927642 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGTCTCTCGCAATAC
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCGCAATAT
* * *
80927707 GAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACTTCAACATGTCCTGAGGCTCAACTCACC
64 GAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
* *
80927772 TCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAACTCA
128 TCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCA
* *
80927837 ACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTT
193 ACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* * *
80927883 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* *
80927948 GTTGATTTTTTTTTACAACAGAAACTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
66 GTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
80928013 CGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAAC
131 CGCAATATGAGTTGAA-TTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAAC
80928078 GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
195 GTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* * * *
80928122 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
80928187 GTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
66 GTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
80928252 CGCAATATGAGTTGAA-TTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACG
131 CGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACG
80928316 TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
196 TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
80928358 TTGACAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATG
1 TTGA-AAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
* * *
80928422 AGTTGATTTTTGAAAAATAAATTGAAACACAAAAATTGACAA-TACCTCAGCGTG-CCCGAGGCT
65 AGTTGATTTTT------T---TTGACA-ACAGAAATTGA-AATTACCTCAGCGTGTCCTGAGGCT
80928485 CAACTCACCTCTCGCAATATGAGTTG-A-TTTTTG----------A---AAAA-CAGAAATTGAA
119 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAA
* *
80928534 AATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
184 ATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
80928588 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
1 TTG--------AAA--G-ACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTC
* * * *
80928653 TCGCAATATGAGTTGATTTTTTTTGAAAGACA-AAATTGAAAATACCTCAGCATGTCTTGAGGCT
55 TCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
** *
80928717 CAACTCATTTCTCGCAATATGAGTTG-A-TTTTT------T-TAAA--G---A-CAAAAATTGAA
119 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAA
* * * * * **
80928767 AATACCTCAGCATGTCTTTAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTT
184 ATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTT
* * * **
80928827 TTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
* * *
80928891 GTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGA
66 GTTG-A---TTTT------T-T---TTGACAA-CAGAAATTGAAATTACCTCAGCGTGTCC-TGA
* *
80928955 GGCTCAACTTACCTCTCGCAGTATGAGTTG-A---TTT------T-T---TTGAAAAGCAGAAAT
115 GGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAAT
* * *
80929006 TGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
180 TGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
80929064 TT
1 TT
80929066 TTGAAACAGA
Statistics
Matches: 1049, Mismatches: 71, Indels: 130
0.84 0.06 0.10
Matches are distributed among these distances:
227 57 0.05
228 1 0.00
230 65 0.06
231 30 0.03
232 47 0.04
233 55 0.05
234 1 0.00
235 2 0.00
236 70 0.07
237 97 0.09
238 73 0.07
239 267 0.25
240 6 0.01
241 102 0.10
242 51 0.05
243 55 0.05
244 7 0.01
245 39 0.04
246 22 0.02
247 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (237 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
GTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGAATTTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACG
TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
Found at i:80928241 original size:75 final size:75
Alignment explanation
Indices: 80928052--80928907 Score: 498
Period size: 74 Copynumber: 11.0 Consensus size: 75
80928042 TATAAATTGA
*
80928052 AAAG-CAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
80928115 TGA-TTTTTTG
65 TGATTTTTTTG
* * * * * ** *
80928125 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGTAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80928190 GATTTTTTTTG
66 GA-TTTTTTTG
*
80928201 ACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
80928265 GA-ATTTTTG
66 GATTTTTTTG
* * * * ** *** * * * * *
80928274 AAAAATATAAATTGAAA--AGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCAC-
1 AAAGACAGAAATTGAAATTACCTCAGCGTG----T-CCT-GA-G-G-C-TCA-ACTCACCTCTCG
* * * **
80928336 C--TCTCGCAATATGAGTTGATT-
55 CAATAT-G-AGT-TGATTTTTTTG
*** ** *
80928357 TTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATG
1 AAAGAC----AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
80928422 AGTTGA--TTTTTG
62 AGTTGATTTTTTTG
* * *** * * * *
80928434 AAA-A-ATAAATTGAAA-CACAAAAATTGACAAT-ACCTCAGCGTGCCCGAGGCTCAACTCACCT
1 AAAGACAGAAATTGAAATTAC-CTCA--G-C-GTGTCCT--GAG-GCTC-A-----A-CTCACCT
80928495 CTCGCAATATGAGTTGA--TTTTTG
51 CTCGCAATATGAGTTGATTTTTTTG
* *
80928518 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
80928583 GATTTTTGAAAAACAT-
66 GATTTTT-------TTG
* * * **
80928599 AAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 AAA--G-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
80928664 GTTGATTTTTTTTG
63 GTTGA-TTTTTTTG
* * * **
80928678 AAAGACA-AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80928742 GATTTTTTT-
66 GATTTTTTTG
* * * * * **
80928751 AAAGACAAAAATTGAAAATACCTCAGCATGTCTTTAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80928816 GATTTTTTTTTTTG
66 GA----TTTTTTTG
*
80928830 ACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80928894 GAATTTTTTTG
66 G-ATTTTTTTG
80928905 AAA
1 AAA
80928908 AATATAAATT
Statistics
Matches: 607, Mismatches: 106, Indels: 138
0.71 0.12 0.16
Matches are distributed among these distances:
70 2 0.00
71 11 0.02
72 5 0.01
73 44 0.07
74 132 0.22
75 126 0.21
76 19 0.03
77 7 0.01
78 75 0.12
79 12 0.02
80 8 0.01
81 10 0.02
82 8 0.01
83 18 0.03
84 95 0.16
85 7 0.01
86 11 0.02
87 12 0.02
89 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
AAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTG
Found at i:80928354 original size:88 final size:87
Alignment explanation
Indices: 80928205--80928377 Score: 285
Period size: 88 Copynumber: 2.0 Consensus size: 87
80928195 TTTTTGACAA
*
80928205 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATT
* *
80928270 TTTGAAAAATATAAATTGAAAAG
65 TTTGAAAAACAGAAATTGAAAAG
80928293 CAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
80928357 TTTGACAAACAGAAATTGAAA
65 TTTGAAAAACAGAAATTGAAA
80928378 TTACCTCAGC
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
87 23 0.29
88 57 0.71
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (87 bp):
CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAAACAGAAATTGAAAAG
Found at i:80928378 original size:73 final size:72
Alignment explanation
Indices: 80928285--80928901 Score: 488
Period size: 73 Copynumber: 8.0 Consensus size: 72
80928275 AAAATATAAA
80928285 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
80928349 AGTTGATTT
64 AGTTGATTT
* ** *
80928358 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGA-AAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
80928423 GTTGATTT
65 GTTGATTT
* * ** ** * *
80928431 TTGAAAA-ATAAATTGAAA-CA-CAAAAATTGACAATACCTCAGCGTGCCCGAGGCTCAACTCAC
1 TTGAAAACAGAAATTGAAATTACCTCAACGTG----T-CCT--GAG-GCTC-A-----A-CTCAC
80928493 CTCTCGCAATATGAGTTGATTT
51 CTCTCGCAATATGAGTTGATTT
* *
80928515 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
80928580 GTTGATTT
65 GTTGATTT
* * **
80928588 TTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTC
1 TTG---------AA---AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTC
80928653 TCGCAATATGAGTTGATTTTTT
54 TCGCAATATGAGTTGA---TTT
* * * * **
80928675 TTGAAAGACA-AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
80928739 GTTGATTTT
65 GTTGA-TTT
* * * * * * * **
80928748 TTTAAAGACAAAAATTGAAAATACCTCAGCATGTCTTTAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
80928813 GTTGATTTTTTTTT
65 GTTGA------TTT
* *
80928827 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
80928892 TTGAATTT
66 TTG-ATTT
80928900 TT
1 TT
80928902 TTGAAAAATA
Statistics
Matches: 457, Mismatches: 44, Indels: 86
0.78 0.07 0.15
Matches are distributed among these distances:
69 4 0.01
70 1 0.00
71 10 0.02
72 3 0.01
73 115 0.25
74 67 0.15
75 57 0.12
76 5 0.01
77 3 0.01
78 58 0.13
79 10 0.02
80 3 0.01
81 5 0.01
83 4 0.01
84 87 0.19
85 4 0.01
86 10 0.02
87 7 0.02
88 4 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:80928540 original size:157 final size:160
Alignment explanation
Indices: 80928122--80929065 Score: 1110
Period size: 157 Copynumber: 5.9 Consensus size: 160
80928112 AGTTGATTTT
* * * * * ** *
80928122 TTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCGTAATATGA
1 TTGAAA-ACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
80928187 GTTGATTTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
65 GTTGA--TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
80928251 TCGCAATATGAGTTGAATTTTTGAAAAATATAAA
128 TCGCAATATGAGTTG-ATTTTTGAAAAATATAAA
*
80928285 TTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-CAAAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
* * **
80928349 AGTTGA-TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCT
64 AGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
80928413 CGTAATATGAGTTGATTTTTG-AAAA-ATAAA
129 CGCAATATGAGTTGATTTTTGAAAAATATAAA
* *
80928443 TTGAAACACAAAAATTGACAA-TACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAA-ACAAAAATTGA-AATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
80928506 AGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 AGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
80928570 CGCAATATGAGTTGATTTTTGAAAAACATAAA
129 CGCAATATGAGTTGATTTTTGAAAAATATAAA
* * * **
80928602 TTG--AACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
80928665 TTGATTTTTTTTGAAAGACA-AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCT
66 TTGA--TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
80928729 CGCAATATGAGTTGATTTTT------T-TAAA
129 CGCAATATGAGTTGATTTTTGAAAAATATAAA
* * * * * **
80928754 --G---ACAAAAATTGAAAATACCTCAGCATGTCTTTAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
80928814 TTGATTTTTTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
66 TTGA-----TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
80928878 TCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAA
126 TCTCGCAATATGAGTTG-A--TTTTTGAAAAATATAAA
* * * *
80928916 TTTAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATG
1 TTGAAAA-CAAAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
* ** *
80928980 AGTTGATTTTTTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTC
64 AGTTGA-TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
80929045 TCGCAATATGAGTTGATTTTT
128 TCGCAATATGAGTTGATTTTT
80929066 TTGAAACAGA
Statistics
Matches: 684, Mismatches: 63, Indels: 69
0.84 0.08 0.08
Matches are distributed among these distances:
149 58 0.08
150 1 0.00
151 4 0.01
152 66 0.10
153 1 0.00
155 7 0.01
156 21 0.03
157 140 0.20
158 37 0.05
159 75 0.11
160 25 0.04
161 61 0.09
162 11 0.02
163 57 0.08
164 9 0.01
165 59 0.09
167 2 0.00
168 50 0.07
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (160 bp):
TTGAAAACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGAAAAATATAAA
Found at i:80928643 original size:477 final size:476
Alignment explanation
Indices: 80927554--80929065 Score: 1745
Period size: 477 Copynumber: 3.2 Consensus size: 476
80927544 AATAGACAAT
* * * *
80927554 AAAAATAGAAATTGAAAATAGCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAACGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGA
** * * *
80927618 GTCAATTTTTTTGAAAGGCAAAAATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGA
63 GTTGA--TTTTTGAAA--CATAAATTG---AACAGAAATTGAAAATACCTCAGCGTGT--CTTGA
* * * *
80927683 GGCTCAACTCGTCTCTCGCAATACGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACTTCA
119 GGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCA
* *
80927748 ACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAATATAAATTTA
183 GCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-TTTTTGAAAAATATAAATTGA
* * *
80927813 AAAGCAGAAATTGAAATTAACTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTG
247 AAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * *
80927878 ATTTTTTGA-AAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCA
312 ATTTTTTGACAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
* *
80927942 ATATGAGTTGATTTTT------T---TTTACAACAGAAACTGAAATTACCTCAGCGTGTCCTGAG
376 ATATGAGTTGATTTTTGAAAAATAAATTTAAAACAGAAATTGAAATTACCTCAGCGTG-CCTGAG
80927998 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
440 GCTCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTTG
*
80928037 AAAAATATAAATTGAAAAGCAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTCACCT
1 ----------A---AAAA-CAGAAATTGAAAATACCTCAACGTGTCC-TGAGGCTCAACTCACCT
* *
80928101 CTCGCAATATGAGTTGATTTTT------TGAAA--G-ACAAAAATTGAAAATACCTCAGCATGTC
51 CTCGCAATATGAGTTGATTTTTGAAACAT-AAATTGAACAGAAATTGAAAATACCTCAGCGTGTC
* *
80928157 TTAAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACC
115 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACC
*
80928222 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATT
180 TCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATT
80928287 GAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
245 GAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
80928352 TGA-TTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGT
310 TGATTTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGC
* * *
80928416 AATATGAGTTGATTTTTGAAAAATAAATTGAAACACAAAAATTGACAA-TACCTCAGCGTGCCCG
375 AATATGAGTTGATTTTTGAAAAATAAATTTAAA-ACAGAAATTGA-AATTACCTCAGCGTGCCTG
80928480 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
438 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
80928518 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
80928583 GATTTTTGAAAAACATAAATTGAACAGAAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTC
66 GATTTTTG--AAACATAAATTGAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTC
* * *
80928648 ATTTCTCGCAATATGAGTTGATTTTTTTTGAAAGACA-AAATTGAAAATACCTCAGCATGTCTTG
129 ATTTCTCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCATGTCCTG
** *
80928712 AGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTT------T-TAAA--G---A-CAAAAAT
193 AGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATTGAAAAGCAGAAAT
* * * * * **
80928763 TGAAAATACCTCAGCATGTCTTTAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTT
258 TGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTT
**
80928828 TGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
318 TGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAG
*
80928892 TTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGG
383 TTG-A--TTTTTG-AAAA-ATAAATTTAAAA-CAGAAATTGAAATTACCTCAGCGTGCC-TGAGG
* *
80928957 CTCAACTTACCTCTCGCAGTATGAGTTGATTTTTTTG
441 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG
* * *
80928994 AAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80929059 GATTTTT
66 GATTTTT
80929066 TTGAAACAGA
Statistics
Matches: 901, Mismatches: 70, Indels: 113
0.83 0.06 0.10
Matches are distributed among these distances:
463 54 0.06
464 1 0.00
467 63 0.07
468 66 0.07
469 13 0.01
470 1 0.00
471 7 0.01
472 7 0.01
473 32 0.04
474 34 0.04
475 70 0.08
476 166 0.18
477 194 0.22
478 33 0.04
480 24 0.03
481 7 0.01
483 1 0.00
484 39 0.04
485 21 0.02
486 5 0.01
493 8 0.01
495 30 0.03
496 4 0.00
497 21 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (476 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAACATAAATTGAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCAT
TTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCATGTCCTGAGG
CTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATTGAAAAGCAGAAATTGA
AATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAAC
AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
TGAAAAATAAATTTAAAACAGAAATTGAAATTACCTCAGCGTGCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTG
Found at i:80928986 original size:317 final size:311
Alignment explanation
Indices: 80928048--80929067 Score: 1450
Period size: 317 Copynumber: 3.2 Consensus size: 311
80928038 AAAATATAAA
* *
80928048 TTGAAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
80928113 GTTGATTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTC
65 GTTGATTTTTTTAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTC
*
80928178 GTAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
130 GCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
*
80928243 CTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATTGAAAAGCAGAAATTGAAATTA
195 CTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTA
80928308 CCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
260 CCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * ** *
80928358 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * ***
80928423 GTTGATTTTTGAAAAATAAATTGAAACACAAAAATTGACAATACCTCAGCGTG-CCCGAGGCTCA
65 GTTGA-TTTT------T---TT-AAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCA
** * *
80928487 ACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT
119 ACTCATTTCTCGCAATATGAGTTGATTTTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGTGT
* *
80928549 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTGAAAAACATAAA-TT-GAA-CAG
183 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATTTAAAAGCAG
* * **
80928610 AAATTGAAACTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
248 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * **
80928675 TTGAAAGACA-AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
80928739 GTTGATTTTTTTAAAGACAAAAATTGAAAATACCTCAGCATGTCTTTAGGCTCAACTCATTTCTC
65 GTTGATTTTTTTAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTC
80928804 GCAATATGAGTTGATTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
130 GCAATATGAGTTGA---TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
80928869 CAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAGAAATTGA
192 CAACTCACCTCTCGCAATATGAGTTGAA--TTTTTGAAAAATATAAATTTAAAAGCAGAAATTGA
* *
80928934 AATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATTTTT
255 AATTACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
80928991 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
80929056 GTTGATTTTTTT
65 GTTGATTTTTTT
80929068 GAAACAGAAA
Statistics
Matches: 626, Mismatches: 52, Indels: 57
0.85 0.07 0.08
Matches are distributed among these distances:
305 27 0.04
306 33 0.05
309 1 0.00
310 60 0.10
311 70 0.11
312 7 0.01
314 74 0.12
315 9 0.01
316 73 0.12
317 151 0.24
318 63 0.10
320 31 0.05
321 27 0.04
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (311 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTAAAGACAAAAATTGAAAATACCTCAGCATGTCTTAAGGCTCAACTCATTTCTCG
CAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGAATTTTTGAAAAATATAAATTTAAAAGCAGAAATTGAAATTAC
CTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:80928991 original size:90 final size:89
Alignment explanation
Indices: 80928834--80928997 Score: 276
Period size: 90 Copynumber: 1.8 Consensus size: 89
80928824 TTTTTGACAA
*
80928834 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
1 CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATT
80928899 TTTTTGAAAAATATAAATTTAAAAG
65 TTTTTGAAAAATATAAATTTAAAAG
* *
80928924 CAGAAATTGAAATTACCTCAACGTG-CCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGATT
1 CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
80928988 TTTTTGAAAA
65 TTTTTGAAAA
80928998 GCAGAAATTG
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
89 15 0.21
90 55 0.79
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (89 bp):
CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGAAAAATATAAATTTAAAAG
Found at i:80929007 original size:75 final size:75
Alignment explanation
Indices: 80928919--80929078 Score: 261
Period size: 75 Copynumber: 2.2 Consensus size: 75
80928909 ATATAAATTT
* * *
80928919 AAAAGCAGAAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80928984 GATTTTTTTG
66 GATTTTTTTG
* *
80928994 AAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
80929059 GATTTTTTTG
66 GATTTTTTTG
80929069 -AAA-CAGAAAT
1 AAAAGCAGAAAT
80929079 AAAATATCAA
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
73 7 0.09
74 3 0.04
75 70 0.88
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
AAAAGCAGAAATTGAAAATACCTCAACGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTG
Found at i:80929050 original size:165 final size:164
Alignment explanation
Indices: 80928759--80929071 Score: 448
Period size: 165 Copynumber: 1.9 Consensus size: 164
80928749 TTAAAGACAA
* * * **
80928759 AAATTGAAAATACCTCAGCATGTCTTTAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT
* * *
80928824 TTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
63 TTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
80928889 GAGTTGAATTTTTTTGAAAAATATAAATTTAAAAGCAG
128 GAGTTG-ATTTTTTTGAAAAATATAAATTTAAAAGCAG
* * * *
80928927 AAATTGAAATTACCTCAACGTGCCTTGAGGCTCAACTTACCTCTCGCAGTATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
80928991 TTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
66 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
80929056 GTTGATTTTTTTGAAA
130 GTTGATTTTTTTGAAA
80929072 CAGAAATAAA
Statistics
Matches: 130, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
164 23 0.18
165 57 0.44
168 50 0.38
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.34
Consensus pattern (164 bp):
AAATTGAAAATACCTCAACATGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAAATATAAATTTAAAAGCAG
Found at i:80939216 original size:15 final size:17
Alignment explanation
Indices: 80939196--80939227 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
80939186 TTAGGAAACG
80939196 TACATAA-A-AAATATA
1 TACATAATATAAATATA
80939211 TACATAATATAAATATA
1 TACATAATATAAATATA
80939228 ATATATACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (17 bp):
TACATAATATAAATATA
Found at i:80946699 original size:88 final size:90
Alignment explanation
Indices: 80946570--80946745 Score: 257
Period size: 88 Copynumber: 2.0 Consensus size: 90
80946560 TTTTTGTATT
* * *
80946570 ATTTCTTTAAAATGTTTGTATTTTTTTTGTATCTATAAATTTAATTTAGTCGGTATTATTTGTAG
1 ATTTCTTTAAAATGTTTGTA-TTTTTTTGTATATAAAAATTTAATTTAGTCGGTATTATTTGTAA
*
80946635 TTTCAATTTTATATTTTCGTGTAATA
65 TTTCAATTTTAAATTTTCGTGTAATA
* *
80946661 ATTTC-TTAGAATGTTTGTA-TTTTTTGTATATAAAAATTTAATTTAGTCTGTATTATTTGTAAT
1 ATTTCTTTAAAATGTTTGTATTTTTTTGTATATAAAAATTTAATTTAGTCGGTATTATTTGTAAT
* *
80946724 TTGAATTTTAAATTTTTGTGTA
66 TTCAATTTTAAATTTTCGTGTA
80946746 TTGTGTATTA
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
88 59 0.77
90 13 0.17
91 5 0.06
ACGTcount: A:0.28, C:0.04, G:0.11, T:0.57
Consensus pattern (90 bp):
ATTTCTTTAAAATGTTTGTATTTTTTTGTATATAAAAATTTAATTTAGTCGGTATTATTTGTAAT
TTCAATTTTAAATTTTCGTGTAATA
Found at i:80949108 original size:47 final size:47
Alignment explanation
Indices: 80949039--80949312 Score: 190
Period size: 47 Copynumber: 5.8 Consensus size: 47
80949029 GGTATAATGC
* *
80949039 CGATGTCATGTCCCACACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * *
80949086 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--CATC-AAGT
* * *
80949135 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-ATCTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCA--AGT
* * * * * *
80949183 GCCAATGCCATGTCCCAAACATGGTCTTACACTGACACAT--TTCATAGC
1 --CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCA-AGT
*
80949231 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TGGCC-TCAA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--CCATCAAGT
* * *
80949275 GCAGATGCCATGTCCCAAACATAGTCTTCCACTGGCTC
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
80949313 TCATGATGTG
Statistics
Matches: 178, Mismatches: 31, Indels: 35
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.01
44 12 0.07
45 15 0.08
46 15 0.08
47 45 0.25
48 22 0.12
49 37 0.21
50 30 0.17
51 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:80949154 original size:49 final size:48
Alignment explanation
Indices: 80949037--80949259 Score: 203
Period size: 49 Copynumber: 4.7 Consensus size: 48
80949027 AGGGTATAAT
* * * *
80949037 GCCGATGTCATGTCCCACACATGGTCTTACACTGGCTCATC-CATC-AA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAATCGAA
* *
80949084 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATCGAA
* * *
80949133 GCCGACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-ATC-GAA
* * **
80949183 GCCAATGCCATGTCCCAAACATGGTCTTACACTGAC-A-CATTTC-ATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGA-A
80949229 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
80949260 AGCTCTGGCC
Statistics
Matches: 147, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
44 10 0.07
45 13 0.09
46 11 0.07
47 33 0.22
48 7 0.05
49 37 0.25
50 34 0.23
51 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCGAA
Found at i:80949216 original size:99 final size:94
Alignment explanation
Indices: 80949088--80949265 Score: 250
Period size: 99 Copynumber: 1.8 Consensus size: 94
80949078 CATCAAGTCG
* *
80949088 ATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGA-GGCCGACGCCATGTCCCAGA
1 ATGCCATGTCCCAAACATGGTCTTACACTGAC-A-C-AAATC-ATAGCCGACG-CATGTCCCAGA
80949152 CATGGTCTTACACTAGCTCTCACATATCTGTGCCA
61 CAT-GTCTTACACTAGCTCTCACATATCTGTGCCA
** *
80949187 ATGCCATGTCCCAAACATGGTCTTACACTGACACATTTCATAGCCGATGCATGTCCCAGACATGT
1 ATGCCATGTCCCAAACATGGTCTTACACTGACACAAATCATAGCCGACGCATGTCCCAGACATGT
80949252 CTTACACTAGCTCT
66 CTTACACTAGCTCT
80949266 GGCCTCAATG
Statistics
Matches: 73, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
94 16 0.22
95 15 0.21
96 9 0.12
97 1 0.01
98 1 0.01
99 31 0.42
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (94 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACACAAATCATAGCCGACGCATGTCCCAGACATGT
CTTACACTAGCTCTCACATATCTGTGCCA
Found at i:80949353 original size:26 final size:26
Alignment explanation
Indices: 80949324--80949376 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
80949314 CATGATGTGG
80949324 CCGATACATGTCCCAGACATGTCTTA
1 CCGATACATGTCCCAGACATGTCTTA
*
80949350 CCGATGCATGTCCCAGACATGTCTTA
1 CCGATACATGTCCCAGACATGTCTTA
80949376 C
1 C
80949377 ACTAGCACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (26 bp):
CCGATACATGTCCCAGACATGTCTTA
Found at i:80952471 original size:40 final size:40
Alignment explanation
Indices: 80952424--80952568 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
80952414 CTCGCACAAG
* * *
80952424 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCATAAAT
*
80952464 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCATAAAT
*** *
80952504 GCCTTC-GGATCTTAGTTTGGATGTAGTCGCTTAGCACTAAA-
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCA-TAAAT
*
80952545 GCCTTCGGGACCTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
80952569 CATTCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 58 0.67
41 20 0.23
42 6 0.07
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCATAAAT
Found at i:80958870 original size:20 final size:21
Alignment explanation
Indices: 80958829--80958878 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
80958819 CAGGGTACAT
80958829 GCCCGTGTGGAAGGGCAACAC
1 GCCCGTGTGGAAGGGCAACAC
80958850 GCCCGTGTGGAAGGG-AACAC
1 GCCCGTGTGGAAGGGCAACAC
80958870 GCCCGTGTG
1 GCCCGTGTG
80958879 AATTAAATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
GCCCGTGTGGAAGGGCAACAC
Found at i:80959986 original size:47 final size:47
Alignment explanation
Indices: 80959917--80960369 Score: 273
Period size: 46 Copynumber: 9.7 Consensus size: 47
80959907 GGTATAATGC
*
80959917 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCATCTATCGAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATCGAGT
* * *
80959964 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--TATCGA-GT
** * * * * *
80960013 CGACACCATGTCTCAGACATGATCTTACATTAGCTC-TCACATATCCGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT--C-TAT-CGAGT
* * * * * * *
80960063 CGATGCAATGTCCCAGACATGGTCTTACATTGACACCTCAATACGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTAT-CGAGT
* * * * * *
80960111 TGAAGCCATGT-CCAGACATAGTTTTACACTGCCACATCT-T-GTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATCG-AGT
*
80960156 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC--TCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCTATCGA-GT
80960202 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATC--TCGAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCTATCGAGT
* * * *
80960247 CCGATG-CATGTCCCAGACAT-GTCTTATACTAGCTC-TCGTCTC-AAT
1 -CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-TATCGAGT
* * * * *
80960292 GCGATGTCATGTCCCAAACATGGTCTTAAACTGTGTCTCAT-AAT-GTAGC
1 -CGATGCCATGTCCCAGACATGGTCTTACACTG-G-CTCATCTATCG-AGT
80960341 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
80960370 AGCAGAAAAA
Statistics
Matches: 327, Mismatches: 54, Indels: 51
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.01
44 18 0.06
45 24 0.07
46 107 0.33
47 77 0.24
48 27 0.08
49 35 0.11
50 33 0.10
51 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCTATCGAGT
Found at i:80960240 original size:92 final size:93
Alignment explanation
Indices: 80959915--80960369 Score: 321
Period size: 92 Copynumber: 4.8 Consensus size: 93
80959905 AGGGTATAAT
*
80959915 GCCGATGCCATGTCCAAGACATGGTCTTACACTGGC-T-CATCTATCG-AGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCT-T-GTAGTCGATG-CATGTCC
**
80959977 CAGACATGGTCTTACACTGACTATCGAAATCGAG
63 CAGACAT-GTCTTACACTGACTA-C-ATCTCGAG
** * * * * * *
80960011 GCCGACACCATGTCTCAGACATGATCTTACATTAGCTCTCACATATCCGT-GTCGATGCAATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-TGTAGTCGATGC-ATGTC
* * *
80960075 CCAGACATGGTCTTACATTGAC-ACCTCAATACG-T
62 CCAGACAT-GTCTTACACTGACTACATC--T-CGAG
** * * * *
80960109 GTTGAAGCCATGT-CCAGACATAGTTTTACACT-GC-CACATCTTGTAGTCGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTGTAGTCGATGCATGTCCCAG
*
80960171 ACATGTCTTACACTGGCTTACATCTCGAG
66 ACATGTCTTACACTGAC-TACATCTCGAG
*
80960200 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGTCCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTGTAGT-CGATGCATGTCCCA
* * * * *
80960262 GACATGTCTTATACT-AGCTCTCGTCTCAAT
65 GACATGTCTTACACTGA-CT-ACATCTCGAG
* * * ** *
80960292 G-CGATGTCATGTCCCAAACATGGTCTTAAACTGTG-TCT-CATAATGTAGCCGATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG-GCT-TACATCTTGTAGTCGATGCATGTCCC
80960354 AGACATGTCTTACACT
64 AGACATGTCTTACACT
80960370 AGCAGAAAAA
Statistics
Matches: 285, Mismatches: 50, Indels: 51
0.74 0.13 0.13
Matches are distributed among these distances:
90 16 0.06
91 35 0.12
92 71 0.25
93 60 0.21
94 4 0.01
96 31 0.11
97 15 0.05
98 13 0.05
99 36 0.13
100 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTTGTAGTCGATGCATGTCCCAG
ACATGTCTTACACTGACTACATCTCGAG
Found at i:80962865 original size:12 final size:12
Alignment explanation
Indices: 80962846--80962903 Score: 52
Period size: 11 Copynumber: 5.0 Consensus size: 12
80962836 GATTAGCATC
80962846 TATGAAATGAAA
1 TATGAAATGAAA
80962858 GT-TGAAATG-AA
1 -TATGAAATGAAA
80962869 TATGAAATGAAA
1 TATGAAATGAAA
* *
80962881 -ATAAAATATAAA
1 TATGAAAT-GAAA
80962893 T-TGAAATGAAA
1 TATGAAATGAAA
80962904 AAAATAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
10 1 0.03
11 18 0.49
12 17 0.46
13 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.26
Consensus pattern (12 bp):
TATGAAATGAAA
Found at i:80962897 original size:23 final size:23
Alignment explanation
Indices: 80962871--80962922 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
80962861 GAAATGAATA
* *
80962871 TGAAATGAAAATAAA-ATATAAAT
1 TGAAATGAAAA-AAATAAAAAAAT
80962894 TGAAATGAAAAAAATAAAAAAAT
1 TGAAATGAAAAAAATAAAAAAAT
80962917 TGAAAT
1 TGAAAT
80962923 AAGACAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (23 bp):
TGAAATGAAAAAAATAAAAAAAT
Found at i:80963002 original size:5 final size:5
Alignment explanation
Indices: 80962994--80963045 Score: 68
Period size: 5 Copynumber: 9.8 Consensus size: 5
80962984 TGTGAAACAA
*
80962994 AAATG AAATG AAATG AAATG AAAATG AAAATG AAGTG AAATG AAAATG
1 AAATG AAATG AAATG AAATG -AAATG -AAATG AAATG AAATG -AAATG
80963042 AAAT
1 AAAT
80963046 TTGAAATAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 27 0.63
6 16 0.37
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (5 bp):
AAATG
Found at i:80963018 original size:16 final size:16
Alignment explanation
Indices: 80962994--80963045 Score: 79
Period size: 16 Copynumber: 3.2 Consensus size: 16
80962984 TGTGAAACAA
80962994 AAATGAAATG-AAATG
1 AAATGAAATGAAAATG
80963009 AAATGAAAATGAAAATG
1 AAATG-AAATGAAAATG
*
80963026 AAGTGAAATGAAAATG
1 AAATGAAATGAAAATG
80963042 AAAT
1 AAAT
80963046 TTGAAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 5 0.15
16 19 0.58
17 9 0.27
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (16 bp):
AAATGAAATGAAAATG
Found at i:80963024 original size:22 final size:22
Alignment explanation
Indices: 80962993--80963044 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
80962983 ATGTGAAACA
80962993 AAAATG-AAATGAAATGAAATG
1 AAAATGAAAATGAAATGAAATG
*
80963014 AAAATGAAAATGAAGTGAAATG
1 AAAATGAAAATGAAATGAAATG
80963036 AAAATGAAA
1 AAAATGAAA
80963045 TTTGAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.17
Consensus pattern (22 bp):
AAAATGAAAATGAAATGAAATG
Found at i:80963624 original size:21 final size:20
Alignment explanation
Indices: 80963597--80963656 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 20
80963587 GTCTTGTCAA
80963597 TTTTTTTATTTCATTTAAAT
1 TTTTTTTATTTCATTTAAAT
*
80963617 TTATTTTT-TTATCATTTTAAT
1 TT-TTTTTATT-TCATTTAAAT
80963638 TTTTTGTCTCATTTCATTT
1 TTTTT-T-T-ATTTCATTT
80963657 TTTTTCATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
20 7 0.21
21 17 0.52
22 1 0.03
23 6 0.18
24 2 0.06
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTTTTTATTTCATTTAAAT
Found at i:80963656 original size:5 final size:5
Alignment explanation
Indices: 80963646--80963799 Score: 87
Period size: 5 Copynumber: 28.6 Consensus size: 5
80963636 ATTTTTTGTC
** *
80963646 TCATT TCATT TTTTT TCATT TCATAT TTATT TCAACTT TCATT TCATT
1 TCATT TCATT TCATT TCATT TCAT-T TCATT TC-A-TT TCATT TCATT
* * *
80963694 TTAGAT TCATT TCAAATT ACATT TCATT TCATAT TCATT TCAAATT TCATT
1 TCA-TT TCATT TC--ATT TCATT TCATT TCAT-T TCATT TC--ATT TCATT
* * *
80963745 TCATT TCAATT T-ATT T-TTT TCATT TCAATT TATATTT TAATT TCATT
1 TCATT TC-ATT TCATT TCATT TCATT TC-ATT T-CA-TT TCATT TCATT
*
80963792 TTATT TCA
1 TCATT TCA
80963800 AAATTTTAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
4 7 0.06
5 69 0.59
6 24 0.21
7 16 0.14
ACGTcount: A:0.26, C:0.14, G:0.01, T:0.59
Consensus pattern (5 bp):
TCATT
Found at i:80963673 original size:17 final size:17
Alignment explanation
Indices: 80963619--80963673 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
80963609 ATTTAAATTT
*
80963619 ATTTTTTTATCATTTTA
1 ATTTTTTTATCATTTCA
*
80963636 ATTTTTTGTCTCATTTC-
1 ATTTTTT-TATCATTTCA
80963653 ATTTTTTT-TCATTTCA
1 ATTTTTTTATCATTTCA
80963669 TATTT
1 -ATTT
80963674 ATTTCAACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 7 0.21
16 1 0.03
17 18 0.55
18 7 0.21
ACGTcount: A:0.18, C:0.11, G:0.02, T:0.69
Consensus pattern (17 bp):
ATTTTTTTATCATTTCA
Found at i:80963691 original size:12 final size:12
Alignment explanation
Indices: 80963659--80963748 Score: 61
Period size: 11 Copynumber: 7.9 Consensus size: 12
80963649 TTTCATTTTT
80963659 TTTCATTTCATA
1 TTTCATTTCATA
80963671 TTT-ATTTCA-A
1 TTTCATTTCATA
80963681 CTTTCATTTCAT-
1 -TTTCATTTCATA
*
80963693 TTT-AGATTC--A
1 TTTCA-TTTCATA
* *
80963703 TTTCAAATT-ACA
1 TTTC-ATTTCATA
80963715 TTTCATTTCATA
1 TTTCATTTCATA
*
80963727 -TTCATTTCAAA
1 TTTCATTTCATA
80963738 TTTCATTTCAT
1 TTTCATTTCAT
80963749 TTCAATTTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 22
0.70 0.06 0.25
Matches are distributed among these distances:
10 5 0.08
11 31 0.50
12 26 0.42
ACGTcount: A:0.28, C:0.17, G:0.01, T:0.54
Consensus pattern (12 bp):
TTTCATTTCATA
Found at i:80963692 original size:28 final size:28
Alignment explanation
Indices: 80963659--80963760 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
80963649 TTTCATTTTT
* *
80963659 TTTCATTTCATATTTATTTCAACTTTCA
1 TTTCATTTCATATTCATTTCAAATTTCA
* * *
80963687 TTTCATTTTAGATTCATTTCAAATTACA
1 TTTCATTTCATATTCATTTCAAATTTCA
80963715 TTTCATTTCATATTCATTTCAAATTTCA
1 TTTCATTTCATATTCATTTCAAATTTCA
*
80963743 TTTCATTTCA-ATTTATTT
1 TTTCATTTCATATTCATTT
80963761 TTTTCATTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
27 7 0.11
28 58 0.89
ACGTcount: A:0.27, C:0.16, G:0.01, T:0.56
Consensus pattern (28 bp):
TTTCATTTCATATTCATTTCAAATTTCA
Found at i:80963702 original size:23 final size:23
Alignment explanation
Indices: 80963659--80963702 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
80963649 TTTCATTTTT
*
80963659 TTTCATTTCATATTTATTTCAAC
1 TTTCATTTCATATTTAATTCAAC
80963682 TTTCATTTCAT-TTTAGATTCA
1 TTTCATTTCATATTTA-ATTCA
80963703 TTTCAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.25, C:0.16, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTCATTTCATATTTAATTCAAC
Found at i:80963721 original size:17 final size:16
Alignment explanation
Indices: 80963699--80963753 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
80963689 TCATTTTAGA
80963699 TTCATTTCAAATTACAT
1 TTCATTTCAAATT-CAT
80963716 TTCATTTC--A-T-A-
1 TTCATTTCAAATTCAT
80963727 TTCATTTCAAATTTCAT
1 TTCATTTCAAA-TTCAT
80963744 TTCATTTCAA
1 TTCATTTCAA
80963754 TTTATTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
11 8 0.25
12 1 0.03
13 1 0.03
14 1 0.03
15 2 0.06
16 1 0.03
17 18 0.56
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (16 bp):
TTCATTTCAAATTCAT
Found at i:80963767 original size:19 final size:19
Alignment explanation
Indices: 80963743--80963797 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
80963733 TCAAATTTCA
80963743 TTTCATTTCAATTTATTTT
1 TTTCATTTCAATTTATTTT
*
80963762 TTTCATTTCAATTTA-TAT
1 TTTCATTTCAATTTATTTT
* *
80963780 TTTAATTTCATTTTATTT
1 TTTCATTTCAATTTATTT
80963798 CAAAATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCATTTCAATTTATTTT
Found at i:80963787 original size:18 final size:18
Alignment explanation
Indices: 80963747--80963795 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
80963737 ATTTCATTTC
* *
80963747 ATTTCAATTTATTTTTTTC
1 ATTTCAATTTA-TATTTTA
80963766 ATTTCAATTTATATTTTA
1 ATTTCAATTTATATTTTA
*
80963784 ATTTCATTTTAT
1 ATTTCAATTTAT
80963796 TTCAAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 16 0.59
19 11 0.41
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTCAATTTATATTTTA
Found at i:80963805 original size:18 final size:16
Alignment explanation
Indices: 80963648--80963800 Score: 84
Period size: 16 Copynumber: 9.1 Consensus size: 16
80963638 TTTTTGTCTC
*
80963648 ATTTCATTTTTTTTC-
1 ATTTCATTTTATTTCA
80963663 ATTTCATATTTATTTCA
1 ATTTCAT-TTTATTTCA
* *
80963680 ACTTTCATTTCATTTTA
1 A-TTTCATTTTATTTCA
80963697 GA-TTCATTTCAAATTACATTTC-
1 -ATTTCA-TT----TT--ATTTCA
*
80963719 ATTTCATATTCATTTCAA
1 ATTTCAT-TTTATTTC-A
*
80963737 ATTTCATTTCATTTCA
1 ATTTCATTTTATTTCA
80963753 ATTT-ATTTT-TTTC-
1 ATTTCATTTTATTTCA
*
80963766 ATTTCAATTTATATTTTA
1 ATTTC-ATTT-TATTTCA
80963784 ATTTCATTTTATTTCA
1 ATTTCATTTTATTTCA
80963800 A
1 A
80963801 AATTTTAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 39
0.69 0.06 0.25
Matches are distributed among these distances:
13 4 0.04
14 4 0.04
15 15 0.14
16 29 0.27
17 25 0.23
18 20 0.18
21 3 0.03
22 5 0.05
23 4 0.04
ACGTcount: A:0.27, C:0.14, G:0.01, T:0.59
Consensus pattern (16 bp):
ATTTCATTTTATTTCA
Found at i:80963827 original size:24 final size:24
Alignment explanation
Indices: 80963778--80963831 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
80963768 TTCAATTTAT
* **
80963778 ATTTTAATTTCATTTTATTTCAAA
1 ATTTTAATTTCATTTAAAGTCAAA
80963802 ATTTTAAATTTCATTTAAAGTCAAA
1 ATTTT-AATTTCATTTAAAGTCAAA
*
80963827 TTTTT
1 ATTTT
80963832 TTCAAATCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTTAATTTCATTTAAAGTCAAA
Found at i:80964045 original size:18 final size:17
Alignment explanation
Indices: 80963994--80964067 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 17
80963984 TTGTCAATTT
*
80963994 TTTTCATTTCAATTTATA
1 TTTTCATTTCAATTT-CA
*
80964012 TTTTCATTT-TATTTCA
1 TTTTCATTTCAATTTCA
80964028 TTTTCATTTCACATTTCA
1 TTTTCATTTCA-ATTTCA
*
80964046 CATTTCACGTTTC-ATTTCA
1 -TTTTCA--TTTCAATTTCA
80964065 TTT
1 TTT
80964068 AAATTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
16 10 0.22
17 4 0.09
18 17 0.37
19 11 0.24
21 4 0.09
ACGTcount: A:0.22, C:0.18, G:0.01, T:0.59
Consensus pattern (17 bp):
TTTTCATTTCAATTTCA
Found at i:80964086 original size:19 final size:20
Alignment explanation
Indices: 80964062--80964106 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
80964052 ACGTTTCATT
80964062 TCATTTAAATTT-TTTTTTC
1 TCATTTAAATTTATTTTTTC
*
80964081 TCATTTCAATTTATTTTTTC
1 TCATTTAAATTTATTTTTTC
80964101 TCATTT
1 TCATTT
80964107 CATTTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.20, C:0.13, G:0.00, T:0.67
Consensus pattern (20 bp):
TCATTTAAATTTATTTTTTC
Found at i:80964116 original size:20 final size:20
Alignment explanation
Indices: 80964062--80964112 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
80964052 ACGTTTCATT
*
80964062 TCATTTAAATTT-TTTTTTC
1 TCATTTCAATTTATTTTTTC
80964081 TCATTTCAATTTATTTTTTC
1 TCATTTCAATTTATTTTTTC
80964101 TCATTTC-ATTTA
1 TCATTTCAATTTA
80964113 ATTTGCGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.65
Consensus pattern (20 bp):
TCATTTCAATTTATTTTTTC
Found at i:80965517 original size:11 final size:12
Alignment explanation
Indices: 80965492--80965518 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80965482 TTCAACTAAT
80965492 AAAAGCAAACAA
1 AAAAGCAAACAA
80965504 AAAAGCAAACAA
1 AAAAGCAAACAA
80965516 AAA
1 AAA
80965519 CTTAATTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.15, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAGCAAACAA
Found at i:80968311 original size:46 final size:46
Alignment explanation
Indices: 80968256--80968436 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
80968246 TAGGATGGTT
80968256 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
80968302 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
80968348 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
80968395 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80968437 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:80968417 original size:93 final size:93
Alignment explanation
Indices: 80968258--80968428 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80968248 GGATGGTTGA
* *
80968258 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80968323 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80968351 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80968416 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80968429 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80971432 original size:15 final size:15
Alignment explanation
Indices: 80971393--80971472 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80971383 GTATCTTGGG
*
80971393 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80971408 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
80971423 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
80971438 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80971453 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80971467 TTTCTT
1 TTTCTT
80971473 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80971462 original size:30 final size:30
Alignment explanation
Indices: 80971384--80971471 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
80971374 CATAGTATCG
* * *
80971384 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
80971414 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
80971444 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
80971472 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:80973893 original size:46 final size:46
Alignment explanation
Indices: 80973843--80974018 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
80973833 ATGGTTGGCA
80973843 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
80973889 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
80973936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
80973982 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80974019 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:80973998 original size:93 final size:93
Alignment explanation
Indices: 80973839--80974010 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80973829 TAGGATGGTT
* *
80973839 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80973904 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
80973932 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
80973997 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
80974011 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80977003 original size:15 final size:15
Alignment explanation
Indices: 80976964--80977041 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
80976954 GTATCTTGGG
*
80976964 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80976979 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
80976994 TTTCTTTA-T-TGGG
1 TTTCTTTATTCTGGA
*
80977007 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80977022 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80977036 TTTCTT
1 TTTCTT
80977042 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 11 0.21
14 9 0.17
15 30 0.58
16 2 0.04
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80977022 original size:43 final size:42
Alignment explanation
Indices: 80976959--80977041 Score: 121
Period size: 43 Copynumber: 2.0 Consensus size: 42
80976949 GTATCGTATC
*
80976959 TTGGGTTTCTTTATCCTGGATCTCTTTATTCTGGATTTCTTTA
1 TTGGGTTTCTCTATCCTGGATCTCTTTATTC-GGATTTCTTTA
* * *
80977002 TTGGGTTTCTCTATCTTGGATTTCTTTATTCGGTTTTCTT
1 TTGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTT
80977042 GTTATCTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 8 0.22
43 28 0.78
ACGTcount: A:0.10, C:0.16, G:0.17, T:0.58
Consensus pattern (42 bp):
TTGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTTTA
Found at i:80977030 original size:28 final size:28
Alignment explanation
Indices: 80976955--80977037 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
80976945 CATAGTATCG
* * * *
80976955 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTAT--TGGGTTTCTC
80976985 TAT-TCTGGATTTCTTTATTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTGGGTTTCTC
*
80977013 TATCTTGGATTTCTTTATTCGGTTT
1 TATCTTGGATTTCTTTATTGGGTTT
80977038 TCTTGTTATC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
28 29 0.63
29 2 0.04
30 15 0.33
ACGTcount: A:0.11, C:0.16, G:0.17, T:0.57
Consensus pattern (28 bp):
TATCTTGGATTTCTTTATTGGGTTTCTC
Found at i:80979471 original size:46 final size:46
Alignment explanation
Indices: 80979416--80979596 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
80979406 TAGGATGGTT
80979416 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
80979462 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
80979508 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
80979555 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80979597 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:80979577 original size:93 final size:93
Alignment explanation
Indices: 80979418--80979588 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80979408 GGATGGTTGA
* *
80979418 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80979483 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80979511 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80979576 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80979589 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80982218 original size:46 final size:46
Alignment explanation
Indices: 80982163--80982343 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
80982153 TAGGATGGTT
80982163 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
80982209 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
80982255 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
80982302 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80982344 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:80982324 original size:93 final size:93
Alignment explanation
Indices: 80982165--80982335 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80982155 GGATGGTTGA
* *
80982165 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80982230 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80982258 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80982323 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80982336 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80985332 original size:15 final size:15
Alignment explanation
Indices: 80985293--80985371 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
80985283 GTATCTTGGG
*
80985293 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
80985308 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
80985323 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
80985337 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
80985352 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
80985366 TTTCTT
1 TTTCTT
80985372 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:80985356 original size:29 final size:29
Alignment explanation
Indices: 80985284--80985370 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
80985274 CATAGTATCG
* * * *
80985284 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
80985314 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
80985343 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
80985371 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:80987802 original size:46 final size:46
Alignment explanation
Indices: 80987747--80987927 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
80987737 TAGGATGGTT
80987747 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * *
80987793 GAGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
*
80987839 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* ** *
80987886 GAACGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80987928 GCGGGTTACA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
45 2 0.02
46 71 0.61
47 33 0.28
48 2 0.02
50 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:80987908 original size:93 final size:93
Alignment explanation
Indices: 80987749--80987919 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
80987739 GGATGGTTGA
* *
80987749 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80987814 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80987842 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80987907 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80987920 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80990386 original size:24 final size:24
Alignment explanation
Indices: 80990241--80990385 Score: 220
Period size: 24 Copynumber: 6.0 Consensus size: 24
80990231 TGCTTTATCA
*
80990241 AATAACTGGAGGCCT-AGCCTCTTTT
1 AATAACTGG-GGCATAAGCC-CTTTT
*
80990266 AATAACTGGGGCAAAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
80990290 AATAACTGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
*
80990314 AATAACGGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
*
80990338 AGTAACTGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
*
80990362 GATAACTGGGGCATAAGCCCTTTT
1 AATAACTGGGGCATAAGCCCTTTT
80990386 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
24 98 0.88
25 13 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AATAACTGGGGCATAAGCCCTTTT
Found at i:80990463 original size:20 final size:20
Alignment explanation
Indices: 80990438--80990501 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
80990428 TGAATACATT
80990438 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
80990458 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
*
80990478 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATATC
80990498 ATGT
1 ATGT
80990502 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:80990468 original size:11 final size:11
Alignment explanation
Indices: 80990438--80990490 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
80990428 TGAATACATT
80990438 ATGTGCATATC
1 ATGTGCATATC
*
80990449 A--TACATATC
1 ATGTGCATATC
80990458 ATGTGCATATC
1 ATGTGCATATC
* *
80990469 A--TACATGTC
1 ATGTGCATATC
80990478 ATGTGCATATC
1 ATGTGCATATC
80990489 AT
1 AT
80990491 ACATACCATG
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:80990550 original size:43 final size:43
Alignment explanation
Indices: 80990503--80990591 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
80990493 ATACCATGTT
80990503 TATCAAAATCCCATGTATTAAATTCATATATAAACCCTAGGGG
1 TATCAAAATCCCATGTATTAAATTCATATATAAACCCTAGGGG
80990546 TATCAAAATCCCATGTATTAAATTCATATATAAACCCTAGGGG
1 TATCAAAATCCCATGTATTAAATTCATATATAAACCCTAGGGG
80990589 TAT
1 TAT
80990592 AATGGTCATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.31
Consensus pattern (43 bp):
TATCAAAATCCCATGTATTAAATTCATATATAAACCCTAGGGG
Found at i:80995410 original size:29 final size:29
Alignment explanation
Indices: 80995368--80995442 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
80995358 ATTAATACTT
80995368 AGTGACTAAAATGTAACATTTCAAACATG
1 AGTGACTAAAATGTAACATTTCAAACATG
80995397 AGTGACTAAAATGTAACATTTCAAACATG
1 AGTGACTAAAATGTAACATTTCAAACATG
*
80995426 AGTGACTAAAATATAAC
1 AGTGACTAAAATGTAAC
80995443 TTGAAACAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (29 bp):
AGTGACTAAAATGTAACATTTCAAACATG
Found at i:80996425 original size:31 final size:31
Alignment explanation
Indices: 80996387--80996449 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
80996377 TTTGGTTAAC
* *
80996387 AAACTATTTAAAAATTTCCATTTAAGTCATT
1 AAACTATTCAAAAATTTCCATTAAAGTCATT
* **
80996418 AAACTATTCAAAAGTTTTTATTAAAGTCATT
1 AAACTATTCAAAAATTTCCATTAAAGTCATT
80996449 A
1 A
80996450 GGTTAATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (31 bp):
AAACTATTCAAAAATTTCCATTAAAGTCATT
Found at i:80996817 original size:28 final size:30
Alignment explanation
Indices: 80996750--80996822 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 30
80996740 AACAACCCAA
* *
80996750 TGACTTAAATGAAAACTTTTAATAGTTTAG
1 TGACATAAAAGAAAACTTTTAATAGTTTAG
* *
80996780 TGACAAAAAAGAAAA-TTTTTATA-TTTAG
1 TGACATAAAAGAAAACTTTTAATAGTTTAG
80996808 T-ATCATAAAAGAAAA
1 TGA-CATAAAAGAAAA
80996823 ATATTTAGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.03
28 17 0.46
29 7 0.19
30 12 0.32
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.34
Consensus pattern (30 bp):
TGACATAAAAGAAAACTTTTAATAGTTTAG
Found at i:80996823 original size:29 final size:30
Alignment explanation
Indices: 80996750--80996829 Score: 76
Period size: 29 Copynumber: 2.7 Consensus size: 30
80996740 AACAACCCAA
* * * *
80996750 TGACTTAAATGAAAACTTTTAATAGTTTAG
1 TGACATAAAAGAAAAATTTTTATAGTTTAG
*
80996780 TGACAAAAAAG-AAAATTTTTATA-TTTAG
1 TGACATAAAAGAAAAATTTTTATAGTTTAG
*
80996808 T-ATCATAAAAGAAAAATATTTA
1 TGA-CATAAAAGAAAAATTTTTA
80996830 GTAATTAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
27 1 0.02
28 13 0.32
29 19 0.46
30 8 0.20
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (30 bp):
TGACATAAAAGAAAAATTTTTATAGTTTAG
Found at i:81004225 original size:11 final size:12
Alignment explanation
Indices: 81004211--81004248 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
81004201 AATAAATATA
81004211 TTTAT-TAAAAT
1 TTTATATAAAAT
81004222 TTTATATAAAA-
1 TTTATATAAAAT
*
81004233 ATTATATAAAAT
1 TTTATATAAAAT
81004245 TTTA
1 TTTA
81004249 ATTGAAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 15 0.65
12 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTATATAAAAT
Found at i:81004337 original size:13 final size:13
Alignment explanation
Indices: 81004319--81004343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81004309 AATTCTAATT
81004319 AAATTTATATAAA
1 AAATTTATATAAA
81004332 AAATTTATATAA
1 AAATTTATATAA
81004344 CTTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTTATATAAA
Found at i:81005355 original size:31 final size:32
Alignment explanation
Indices: 81005301--81005373 Score: 96
Period size: 31 Copynumber: 2.3 Consensus size: 32
81005291 AGTTCTTATT
81005301 TGAGCACTTTCCAAAAAGGTTTGGCTC-TCATA
1 TGAGCACTTTCCAAAAAGGTTTGG-TCATCATA
* * *
81005333 TGAGCACTTT-CAAAAAGTTTTGGTCATTATT
1 TGAGCACTTTCCAAAAAGGTTTGGTCATCATA
81005364 TGAGCACTTT
1 TGAGCACTTT
81005374 GAAAGATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.05
31 25 0.68
32 10 0.27
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (32 bp):
TGAGCACTTTCCAAAAAGGTTTGGTCATCATA
Found at i:81006881 original size:26 final size:27
Alignment explanation
Indices: 81006843--81006894 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
81006833 TAATTAAAAA
81006843 TATATTTTATTGTT-TATATTAATATTTT
1 TATATTTTATTGTTATA-ATTAA-ATTTT
81006871 TATA-TTT-TTGTTATAATTAAATTT
1 TATATTTTATTGTTATAATTAAATTT
81006895 AAAAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
25 4 0.17
26 10 0.43
27 5 0.22
28 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (27 bp):
TATATTTTATTGTTATAATTAAATTTT
Found at i:81007965 original size:24 final size:24
Alignment explanation
Indices: 81007937--81007986 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
81007927 AAAATCAAAT
*
81007937 GAGCAACAGACACAAAATTTAGCA
1 GAGCAACAAACACAAAATTTAGCA
81007961 GAGCAACAAACACAAAATTTAGCA
1 GAGCAACAAACACAAAATTTAGCA
81007985 GA
1 GA
81007987 ACGGAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.20, G:0.16, T:0.12
Consensus pattern (24 bp):
GAGCAACAAACACAAAATTTAGCA
Found at i:81010461 original size:79 final size:76
Alignment explanation
Indices: 81010310--81010454 Score: 227
Period size: 79 Copynumber: 1.9 Consensus size: 76
81010300 TAAAGTTTTT
* * *
81010310 TATTTAAATTGTAAAAAAAAACCATAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAAAT
1 TATTTAAATTGTAAAAAAAAACAATAAATTAATAAATAAAATGCCAAAAAAGTCATTACATAAAT
81010375 ACAAAGTTGAC
66 ACAAAGTTGAC
*
81010386 TATTTAAATTGTTAAAAAAAAACAAATAAAATTAATAAATAAAATGCCAAAAAATTCATTACATA
1 TATTTAAATTG-TAAAAAAAAAC-AAT-AAATTAATAAATAAAATGCCAAAAAAGTCATTACATA
81010451 AATA
63 AATA
81010455 TGAAGTTATT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
76 11 0.18
77 11 0.18
78 2 0.03
79 38 0.61
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.28
Consensus pattern (76 bp):
TATTTAAATTGTAAAAAAAAACAATAAATTAATAAATAAAATGCCAAAAAAGTCATTACATAAAT
ACAAAGTTGAC
Found at i:81013133 original size:60 final size:60
Alignment explanation
Indices: 81013068--81013186 Score: 204
Period size: 60 Copynumber: 2.0 Consensus size: 60
81013058 ATACTAAACT
* *
81013068 AAACACAACAAA-TTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAA-AAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
81013128 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
81013187 TAAAAAAAAC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
59 3 0.05
60 53 0.95
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.33
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:81013730 original size:18 final size:18
Alignment explanation
Indices: 81013688--81013734 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
81013678 TTTTAATAAA
81013688 AATA-AAAAATAATATTTT
1 AATATAAAAA-AATATTTT
*
81013706 -ATTTAAAAAAATATTTT
1 AATATAAAAAAATATTTT
81013723 AATATAAAAAAA
1 AATATAAAAAAA
81013735 GAGTTGTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AATATAAAAAAATATTTT
Found at i:81016318 original size:25 final size:25
Alignment explanation
Indices: 81016290--81016378 Score: 76
Period size: 25 Copynumber: 3.6 Consensus size: 25
81016280 ACAAATCATA
*
81016290 AAGCTCATAAAAGTCAATTATCGGG
1 AAGCTCATAAAAGCCAATTATCGGG
* *
81016315 AAGCTCGTAAGAA-CCATATAAT-GGG
1 AAGCTCATAA-AAGCCA-ATTATCGGG
* *
81016340 AAGCTCATAAAAGCCAAATATCAGG
1 AAGCTCATAAAAGCCAATTATCGGG
*
81016365 ATA-CTCATTAAAGC
1 A-AGCTCATAAAAGC
81016379 TAATAACGGG
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
24 5 0.10
25 39 0.76
26 7 0.14
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21
Consensus pattern (25 bp):
AAGCTCATAAAAGCCAATTATCGGG
Found at i:81017176 original size:42 final size:42
Alignment explanation
Indices: 81017117--81017206 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
81017107 ACCACATGCC
* *
81017117 CATGTGCCAGGCCGTGTGTCATACACGGTCAAGACACACACT
1 CATGTGCCAAGCCGTGTGTCACACACGGTCAAGACACACACT
*
81017159 CATGTGCCAAGCCGTGTGTCACACACGGTCAAGACACACGCT
1 CATGTGCCAAGCCGTGTGTCACACACGGTCAAGACACACACT
*
81017201 CGTGTG
1 CATGTG
81017207 TCTACCCGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (42 bp):
CATGTGCCAAGCCGTGTGTCACACACGGTCAAGACACACACT
Found at i:81017216 original size:42 final size:42
Alignment explanation
Indices: 81017117--81017218 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
81017107 ACCACATGCC
** *
81017117 CATGTGCCAGGCCGTGTGTCATACACGGTCAAGACACACACT
1 CATGTGCCAACCCGTGTGTCACACACGGTCAAGACACACACT
* *
81017159 CATGTGCCAAGCCGTGTGTCACACACGGTCAAGACACACGCT
1 CATGTGCCAACCCGTGTGTCACACACGGTCAAGACACACACT
* * *
81017201 CGTGTGTCTACCCGTGTG
1 CATGTGCCAACCCGTGTG
81017219 GACAAAATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (42 bp):
CATGTGCCAACCCGTGTGTCACACACGGTCAAGACACACACT
Found at i:81018081 original size:23 final size:24
Alignment explanation
Indices: 81018026--81018179 Score: 115
Period size: 24 Copynumber: 6.5 Consensus size: 24
81018016 AGCCTTGTAA
*
81018026 CGGGAAGCTCACATAGAGCCATTT
1 CGGGAAGCTCACATAGAGCCATAT
* *
81018050 TGGGAAGCTCACAAAGAGCC-TAT
1 CGGGAAGCTCACATAGAGCCATAT
* * *
81018073 CGGGAAGCTTATC-TGGA-CTATAT
1 CGGGAAGCTCA-CATAGAGCCATAT
*
81018096 AACGGGAAGCT--CATGAGAGCCATAA
1 --CGGGAAGCTCACAT-AGAGCCATAT
* * *
81018121 CTGGGAAGTTTACATAGAACCATAT
1 C-GGGAAGCTCACATAGAGCCATAT
81018146 CGGGAAGCTCACGA-AGAGCC-TAT
1 CGGGAAGCTCAC-ATAGAGCCATAT
81018169 CGGGAAGCTCA
1 CGGGAAGCTCA
81018180 ATAAGAACCA
Statistics
Matches: 102, Mismatches: 17, Indels: 23
0.72 0.12 0.16
Matches are distributed among these distances:
22 2 0.02
23 32 0.31
24 42 0.41
25 23 0.23
26 3 0.03
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.19
Consensus pattern (24 bp):
CGGGAAGCTCACATAGAGCCATAT
Found at i:81018107 original size:48 final size:47
Alignment explanation
Indices: 81018026--81018190 Score: 140
Period size: 47 Copynumber: 3.5 Consensus size: 47
81018016 AGCCTTGTAA
* * * *
81018026 CGGGAAGCTCACATAGAGCCATTTTGGGAAGCTCACAAAGAGCCTAT
1 CGGGAAGCTTACATAGAACCATATCGGGAAGCTCACAAAGAGCCTAT
* * ** *
81018073 CGGGAAGCTTATC-T-GGACTATATAACGGGAAGCTCA-TGAGAGCCATAA
1 CGGGAAGCTTA-CATAGAACCATAT--CGGGAAGCTCACAAAGAGCC-TAT
* *
81018121 CTGGGAAGTTTACATAGAACCATATCGGGAAGCTCACGAAGAGCCTAT
1 C-GGGAAGCTTACATAGAACCATATCGGGAAGCTCACAAAGAGCCTAT
*
81018169 CGGGAAGCTCA-ATAAGAACCAT
1 CGGGAAGCTTACAT-AGAACCAT
81018191 GTAACAGGAA
Statistics
Matches: 92, Mismatches: 17, Indels: 18
0.72 0.13 0.14
Matches are distributed among these distances:
46 7 0.08
47 33 0.36
48 29 0.32
49 16 0.17
50 7 0.08
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (47 bp):
CGGGAAGCTTACATAGAACCATATCGGGAAGCTCACAAAGAGCCTAT
Found at i:81021305 original size:47 final size:47
Alignment explanation
Indices: 81021244--81021336 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 47
81021234 CTAGTACGGC
* * **
81021244 ACTCAGTGCCTCATCGGCTT-TGCCGAAGTAAACAGTAACAGTACGAT
1 ACTCAGTACCTCATCGGATTAAACCGAAGT-AACAGTAACAGTACGAT
*
81021291 ACTCAGTACCTCATCGGATTAAACTGAAGTAACAGTAACAGTACGA
1 ACTCAGTACCTCATCGGATTAAACCGAAGTAACAGTAACAGTACGA
81021337 CACACAAGGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 34 0.85
48 6 0.15
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (47 bp):
ACTCAGTACCTCATCGGATTAAACCGAAGTAACAGTAACAGTACGAT
Found at i:81022939 original size:7 final size:7
Alignment explanation
Indices: 81022927--81022971 Score: 72
Period size: 7 Copynumber: 6.4 Consensus size: 7
81022917 TTAATTTACT
81022927 AATGATA
1 AATGATA
81022934 AATGATA
1 AATGATA
81022941 AATGATA
1 AATGATA
81022948 AATGATA
1 AATGATA
*
81022955 AATAATA
1 AATGATA
*
81022962 AATAATA
1 AATGATA
81022969 AAT
1 AAT
81022972 ATCTTATGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (7 bp):
AATGATA
Found at i:81023100 original size:3 final size:3
Alignment explanation
Indices: 81023085--81023147 Score: 65
Period size: 3 Copynumber: 21.3 Consensus size: 3
81023075 TTAATTTATT
* * * * *
81023085 TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA T-A TAG TTA TAA TAC TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
81023132 TAC TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
81023148 TAAATTTACT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:81024245 original size:12 final size:13
Alignment explanation
Indices: 81024211--81024248 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
81024201 AAGGTTATTT
81024211 AATTACTATTTAAA
1 AATTA-TATTTAAA
81024225 AATTATATTTAAA
1 AATTATATTTAAA
81024238 ATATTAT-TTTA
1 A-ATTATATTTA
81024249 CTAAATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTATATTTAAA
Found at i:81024388 original size:38 final size:38
Alignment explanation
Indices: 81024346--81024423 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
81024336 TATAGTAAGT
*
81024346 ATGTAACAGTTCGTTTTTCAATGGTGTCGAAAATAATG
1 ATGTAACAGTTCGTTTTTCAATGGTGTAGAAAATAATG
*
81024384 ATGTAACAGTTCGTTTTTCAGTGGTGTAGAAAATAATG
1 ATGTAACAGTTCGTTTTTCAATGGTGTAGAAAATAATG
81024422 AT
1 AT
81024424 TTTGGAACCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (38 bp):
ATGTAACAGTTCGTTTTTCAATGGTGTAGAAAATAATG
Found at i:81043050 original size:43 final size:44
Alignment explanation
Indices: 81042928--81043073 Score: 120
Period size: 43 Copynumber: 3.4 Consensus size: 44
81042918 TGTGATATCG
** * * *
81042928 TGTAAGACCACATATGGGACATTGGCATCGAT-TTGAGATTTACA
1 TGTAAGACCATGTCTGGGACACTGGCATCGATATT-TGATTTACA
* * * *
81042972 TGTAAGACCATGTCTGGGACACCGACAT-GGTATTTGATTT-CG
1 TGTAAGACCATGTCTGGGACACTGGCATCGATATTTGATTTACA
* * *
81043014 TGTAAGACCCTGTCTGGGATAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCATGTCTGGGACACTGGCATCGATATTTGATTTACA
* * *
81043057 CGTAAGATCACGTCTGG
1 TGTAAGACCATGTCTGG
81043074 TACGTTGGCA
Statistics
Matches: 79, Mismatches: 20, Indels: 7
0.75 0.19 0.07
Matches are distributed among these distances:
42 26 0.33
43 29 0.37
44 24 0.30
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACACTGGCATCGATATTTGATTTACA
Found at i:81051414 original size:6 final size:6
Alignment explanation
Indices: 81051401--81051431 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
81051391 AGCCGAAAAA
81051401 TAAC-G TAACAG TAACAG TAACAG TAACAG TA
1 TAACAG TAACAG TAACAG TAACAG TAACAG TA
81051432 CGGTACAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
TAACAG
Found at i:81052395 original size:13 final size:13
Alignment explanation
Indices: 81052377--81052403 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81052367 CTTTTATGTT
81052377 TTATTATATTATA
1 TTATTATATTATA
81052390 TTATTATATTATA
1 TTATTATATTATA
81052403 T
1 T
81052404 ACTTAAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATTATATTATA
Done.