Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 283 of 427
Found at i:81544637 original size:33 final size:33
Alignment explanation
Indices: 81544594--81544672 Score: 149
Period size: 33 Copynumber: 2.4 Consensus size: 33
81544584 GAATCTTTAG
*
81544594 TCTCACCATCTTCTGCAGCTGAGAAATCGCTCA
1 TCTCAACATCTTCTGCAGCTGAGAAATCGCTCA
81544627 TCTCAACATCTTCTGCAGCTGAGAAATCGCTCA
1 TCTCAACATCTTCTGCAGCTGAGAAATCGCTCA
81544660 TCTCAACATCTTC
1 TCTCAACATCTTC
81544673 ACCAGCACCG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.29
Consensus pattern (33 bp):
TCTCAACATCTTCTGCAGCTGAGAAATCGCTCA
Found at i:81555478 original size:21 final size:21
Alignment explanation
Indices: 81555452--81555492 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81555442 ATCTGCTCAA
* *
81555452 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
81555473 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
81555493 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:81561811 original size:4 final size:4
Alignment explanation
Indices: 81561802--81561833 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
81561792 TTTATGTTTT
81561802 GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA
1 GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA
81561834 AGGTTATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTTA
Found at i:81565677 original size:9 final size:9
Alignment explanation
Indices: 81565663--81565687 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
81565653 CCCACAGAAT
81565663 TTTTTTTTA
1 TTTTTTTTA
81565672 TTTTTTTTA
1 TTTTTTTTA
81565681 TTTTTTT
1 TTTTTTT
81565688 CGTATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:81565695 original size:17 final size:17
Alignment explanation
Indices: 81565675--81565712 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
81565665 TTTTTTATTT
81565675 TTTTTATTTTTTTCGTA-
1 TTTTTATTTTTTT-GTAC
81565692 -TTTTATTTTTTTGTAC
1 TTTTTATTTTTTTGTAC
81565708 TTTTT
1 TTTTT
81565713 TTATCACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.16
16 12 0.63
17 4 0.21
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTTTTGTAC
Found at i:81569158 original size:5 final size:5
Alignment explanation
Indices: 81569148--81569178 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
81569138 CATTACCTTG
81569148 CATTT CATTT CATTT CATTT CATTT ACATTT
1 CATTT CATTT CATTT CATTT CATTT -CATTT
81569179 AGGTTAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.23, C:0.19, G:0.00, T:0.58
Consensus pattern (5 bp):
CATTT
Found at i:81569190 original size:16 final size:14
Alignment explanation
Indices: 81569171--81569208 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
81569161 TTCATTTCAT
81569171 TTACATTTAGGTTAA
1 TTACATTTA-GTTAA
81569186 CTTACATTTAGTTAA
1 -TTACATTTAGTTAA
81569201 TTA-ATTTA
1 TTACATTTA
81569209 ATTTGACACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.23
14 3 0.14
15 5 0.23
16 9 0.41
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (14 bp):
TTACATTTAGTTAA
Found at i:81571767 original size:4 final size:4
Alignment explanation
Indices: 81571755--81571997 Score: 228
Period size: 4 Copynumber: 62.2 Consensus size: 4
81571745 ATGTAAATAT
* * * *
81571755 TATG TACG TACG TATG TAGG TATG TATG TATG TATG TATG TATG TACG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* ** * * *
81571803 TATG TACG TATG --TG TATG TACA TATG TACG TATG TACG TATG TACG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
** * * *
81571849 TATG --TG TATG TACA TATG TACG TATG TACG TATG TATG TATG TACG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * *
81571895 TATG TATG --TG TATG TATG TATG TACG TACG TACG TATG TACG TACG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
81571941 TATG TATG TATG TACG TACG TATG TATG TACG TATG TATG TATG TACG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
81571989 TATG TATG T
1 TATG TATG T
81571998 GTAGTGAACT
Statistics
Matches: 195, Mismatches: 38, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
2 6 0.03
4 189 0.97
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.41
Consensus pattern (4 bp):
TATG
Found at i:81571779 original size:8 final size:8
Alignment explanation
Indices: 81571755--81571994 Score: 262
Period size: 8 Copynumber: 30.8 Consensus size: 8
81571745 ATGTAAATAT
81571755 TATGTACG
1 TATGTACG
* *
81571763 TACGTATG
1 TATGTACG
* *
81571771 TAGGTATG
1 TATGTACG
*
81571779 TATGTATG
1 TATGTACG
*
81571787 TATGTATG
1 TATGTACG
81571795 TATGTACG
1 TATGTACG
81571803 TATGTACG
1 TATGTACG
81571811 TATGT--G
1 TATGTACG
*
81571817 TATGTACA
1 TATGTACG
81571825 TATGTACG
1 TATGTACG
81571833 TATGTACG
1 TATGTACG
81571841 TATGTACG
1 TATGTACG
81571849 TATGT--G
1 TATGTACG
*
81571855 TATGTACA
1 TATGTACG
81571863 TATGTACG
1 TATGTACG
81571871 TATGTACG
1 TATGTACG
*
81571879 TATGTATG
1 TATGTACG
81571887 TATGTACG
1 TATGTACG
*
81571895 TATGTATGTG
1 TATGTA--CG
*
81571905 TATGTATG
1 TATGTACG
81571913 TATGTACG
1 TATGTACG
*
81571921 TACGTACG
1 TATGTACG
81571929 TATGTAC-
1 TATGTACG
81571936 ---GTACG
1 TATGTACG
*
81571941 TATGTATG
1 TATGTACG
81571949 TATGTACG
1 TATGTACG
* *
81571957 TACGTATG
1 TATGTACG
81571965 TATGTACG
1 TATGTACG
*
81571973 TATGTATG
1 TATGTACG
81571981 TATGTACG
1 TATGTACG
81571989 TATGTA
1 TATGTA
81571995 TGTGTAGTGA
Statistics
Matches: 199, Mismatches: 23, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
4 4 0.02
6 12 0.06
8 176 0.88
10 7 0.04
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.41
Consensus pattern (8 bp):
TATGTACG
Found at i:81571787 original size:16 final size:16
Alignment explanation
Indices: 81571755--81571997 Score: 300
Period size: 16 Copynumber: 15.6 Consensus size: 16
81571745 ATGTAAATAT
* * *
81571755 TATGTACGTACGTATG
1 TATGTATGTATGTACG
* *
81571771 TAGGTATGTATGTATG
1 TATGTATGTATGTACG
81571787 TATGTATGTATGTACG
1 TATGTATGTATGTACG
*
81571803 TATGTACGTATGT--G
1 TATGTATGTATGTACG
**
81571817 TATGTACATATGTACG
1 TATGTATGTATGTACG
*
81571833 TATGTACGTATGTACG
1 TATGTATGTATGTACG
*
81571849 TATG--TGTATGTACA
1 TATGTATGTATGTACG
*
81571863 TATGTACGTATGTACG
1 TATGTATGTATGTACG
81571879 TATGTATGTATGTACG
1 TATGTATGTATGTACG
*
81571895 TATGTATG--TGTATG
1 TATGTATGTATGTACG
*
81571909 TATGTATGTACGTACG
1 TATGTATGTATGTACG
* *
81571925 TACGTATGTACGTACG
1 TATGTATGTATGTACG
81571941 TATGTATGTATGTACG
1 TATGTATGTATGTACG
*
81571957 TACGTATGTATGTACG
1 TATGTATGTATGTACG
81571973 TATGTATGTATGTACG
1 TATGTATGTATGTACG
81571989 TATGTATGT
1 TATGTATGT
81571998 GTAGTGAACT
Statistics
Matches: 200, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
14 38 0.19
16 162 0.81
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.41
Consensus pattern (16 bp):
TATGTATGTATGTACG
Found at i:81578371 original size:18 final size:17
Alignment explanation
Indices: 81578348--81578381 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
81578338 ATCAAAGTTT
81578348 GGAAAAGAAAAAGAAAAA
1 GGAAAAG-AAAAGAAAAA
81578366 GGAAAAGAAAAGAAAA
1 GGAAAAGAAAAGAAAA
81578382 GAAGACAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
GGAAAAGAAAAGAAAAA
Found at i:81582808 original size:20 final size:20
Alignment explanation
Indices: 81582771--81582811 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
81582761 CGCAGCAAAT
* * *
81582771 AAACAATCTCGAATAGCATG
1 AAACAATCCCAAACAGCATG
81582791 AAACAATCCCAAACAGCATG
1 AAACAATCCCAAACAGCATG
81582811 A
1 A
81582812 GTAGAAGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.24, G:0.12, T:0.15
Consensus pattern (20 bp):
AAACAATCCCAAACAGCATG
Found at i:81587300 original size:21 final size:21
Alignment explanation
Indices: 81587274--81587314 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81587264 AGACGAGCGA
* *
81587274 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
81587295 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
81587315 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:81592614 original size:17 final size:16
Alignment explanation
Indices: 81592578--81592613 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
81592568 TAACTTTTAG
81592578 AAAATAAAAATATATA
1 AAAATAAAAATATATA
81592594 AAAATTAAAAATA-ATA
1 AAAA-TAAAAATATATA
81592610 AAAA
1 AAAA
81592614 AATTGTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAAAAATATATA
Found at i:81592614 original size:18 final size:17
Alignment explanation
Indices: 81592578--81592617 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
81592568 TAACTTTTAG
*
81592578 AAAA-TAAAAATATATA
1 AAAATTAAAAATATAAA
81592594 AAAATTAAAAATAATAAA
1 AAAATTAAAAAT-ATAAA
81592612 AAAATT
1 AAAATT
81592618 GTTTTCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.19
17 7 0.33
18 10 0.48
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
AAAATTAAAAATATAAA
Found at i:81594436 original size:13 final size:13
Alignment explanation
Indices: 81594418--81594464 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
81594408 TTTAGATAAA
81594418 TAATTAATAAAAT
1 TAATTAATAAAAT
* *
81594431 TAATTAGTCAAAT
1 TAATTAATAAAAT
*
81594444 CAATTAATAAAAT
1 TAATTAATAAAAT
*
81594457 AAATTAAT
1 TAATTAAT
81594465 TAAACAAACC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (13 bp):
TAATTAATAAAAT
Found at i:81598232 original size:29 final size:29
Alignment explanation
Indices: 81598190--81598260 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
81598180 TTAAAAGGTT
*
81598190 TCTCATCTCAACGCAACATACTGTCTCGG
1 TCTCATCTCAACGCAACATACTGTCTAGG
*
81598219 TCTCATTTCAACGCAACATACTGTCTAGG
1 TCTCATCTCAACGCAACATACTGTCTAGG
*
81598248 TCTTATCTCAACG
1 TCTCATCTCAACG
81598261 ACCCATGCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (29 bp):
TCTCATCTCAACGCAACATACTGTCTAGG
Found at i:81601123 original size:18 final size:20
Alignment explanation
Indices: 81601081--81601117 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81601071 ATATTTTATG
*
81601081 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
81601100 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
81601118 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:81603332 original size:46 final size:46
Alignment explanation
Indices: 81603275--81603833 Score: 650
Period size: 46 Copynumber: 12.0 Consensus size: 46
81603265 AGTGTGCTCT
* *
81603275 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
81603321 CTGATAAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
81603367 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
81603413 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
81603459 CTGATATGAAATGTGTAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * *
81603505 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * *
81603551 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCACATGGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCA-A---C
*
81603601 AGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --C-TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** *
81603650 ATGACAAAAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGAC-ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * * *
81603697 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81603743 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * * *
81603789 ATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGAC-ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
81603834 TCATGTCAAA
Statistics
Matches: 463, Mismatches: 41, Indels: 17
0.89 0.08 0.03
Matches are distributed among these distances:
46 344 0.74
47 76 0.16
49 1 0.00
50 1 0.00
52 1 0.00
53 40 0.09
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81603524 original size:138 final size:138
Alignment explanation
Indices: 81603290--81603860 Score: 723
Period size: 138 Copynumber: 4.1 Consensus size: 138
81603280 ATGAAATGTG
* * * **
81603290 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATAAGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAATGAATAAGACCATGGTTGAAAGA
* * * * * * *
81603355 TACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATAT
66 TACCATGGCAACATGACAAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
***
81603420 GAAATGTG
131 GAAATAAA
* ** *
81603428 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACCATGGTTGAATGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAATGAATAAGACCATGGTTGAAAGA
** *** *
81603493 TACCATGGCAACATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGG
66 TACCATGGCAACATGACAAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
81603558 GAAATAAA
131 GAAATAAA
81603566 TAAGACCATGGTTGAAAGATACCATGGCACATGGCAGCGTGACATGAAATGAATAAGACCATGGT
1 TAAGACCATGGTTGAAAGATACCATGG--CA--GC--C-TGACATGAAATGAATAAGACCATGGT
*
81603631 TGAAAGATACCATGGCAACATGACAAAAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
59 TGAAAGATACCATGGCAACATGAC-AAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA
*
81603696 CATGACGGGAAATAAA
123 CATGACAGGAAATAAA
*
81603712 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAATGAATAAGACCATGGTTGAAAGA
* * * * * * *
81603777 TACCATGGCAACATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCA
66 TACCATGGCAACATGAC-AAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA
81603842 --AAGATAAA
130 GGAA-ATAAA
81603850 TAAGACCATGG
1 TAAGACCATGG
81603861 ATGGAAGACG
Statistics
Matches: 388, Mismatches: 36, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
137 2 0.01
138 163 0.42
139 91 0.23
140 2 0.01
142 4 0.01
144 3 0.01
145 46 0.12
146 77 0.20
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAAGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
GAAATAAA
Found at i:81603672 original size:47 final size:47
Alignment explanation
Indices: 81603612--81603860 Score: 308
Period size: 46 Copynumber: 5.4 Consensus size: 47
81603602 GCGTGACATG
81603612 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
** ***
81603659 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC-GGG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
* * * **
81603705 AAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC-ATG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
81603751 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
* * * * * *
81603798 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTC--AA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
* *
81603843 AGATAAATAAGACCATGG
1 AAATGAATAAGACCATGG
81603861 ATGGAAGACG
Statistics
Matches: 174, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
45 16 0.09
46 79 0.45
47 79 0.45
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (47 bp):
AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAAAA
Found at i:81605103 original size:121 final size:121
Alignment explanation
Indices: 81604946--81605187 Score: 459
Period size: 122 Copynumber: 2.0 Consensus size: 121
81604936 ATTTAACTAA
*
81604946 ATAAATAAAAATAGAAATTTATTTCATATTTTATTATCAATTTAAATAATTATTTAAT-ATTTAT
1 ATAAATAAAAATAAAAATTTATTTCATATTTTATTATCAATTTAAATAATTATTTAATAATTTAT
81605010 TATATATACATATATCTCAATTTAATCTCTTTAATTCCTATTTTCAATTTTGACTT
66 TATATATACATATATCTCAATTTAATCTCTTTAATTCCTATTTTCAATTTTGACTT
81605066 ATAAATAAAAATAAAAATTTATTTTCATATTTTATTATCAATTTAAATAATTATTTAATAATTTA
1 ATAAATAAAAATAAAAATTTA-TTTCATATTTTATTATCAATTTAAATAATTATTTAATAATTTA
81605131 TTATATATACATATATCTCAATTTAATCTCTTTAATTCCTATTTTCAATTTTGACTT
65 TTATATATACATATATCTCAATTTAATCTCTTTAATTCCTATTTTCAATTTTGACTT
81605188 CACCAGCCCA
Statistics
Matches: 119, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
120 20 0.17
121 37 0.31
122 62 0.52
ACGTcount: A:0.40, C:0.09, G:0.01, T:0.50
Consensus pattern (121 bp):
ATAAATAAAAATAAAAATTTATTTCATATTTTATTATCAATTTAAATAATTATTTAATAATTTAT
TATATATACATATATCTCAATTTAATCTCTTTAATTCCTATTTTCAATTTTGACTT
Found at i:81608768 original size:50 final size:50
Alignment explanation
Indices: 81608449--81608815 Score: 251
Period size: 50 Copynumber: 7.7 Consensus size: 50
81608439 TTATTTGTGC
* * *
81608449 GCTAGTGTAAGA-TATGTTTGGGACAT-GCATCGGC-C-ACATCA--TGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGA-AT-ATGTGAAA
* * * * * *
81608495 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTG-AGA--CGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGAATATGTGAAA
*
81608543 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTCGAA-ATGT--AA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAATATGTGAAA
* * * **
81608589 GCAAGTGTAAGA-TATGTCTGGGACAT-GCATC-G-AC---TATGAGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGA-AA
* * *
81608633 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGGATATGTGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAAA
* *
81608683 GCTAGTATAAGACCATGTTTGGGACATGGCATCGGCACGAATATGTGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAAA
* ** * *
81608733 GCTAGTGTAAGACCTTGTCTGGGACATGGGGTCGGCCTCG-AT-T-TCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGAATATGT-GAAA
* * *
81608782 GTTATTGTAAGACCATGTCTGAGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
81608816 AATTGATGGA
Statistics
Matches: 257, Mismatches: 42, Indels: 41
0.76 0.12 0.12
Matches are distributed among these distances:
41 3 0.01
43 1 0.00
44 11 0.04
45 14 0.05
46 55 0.21
47 28 0.11
48 26 0.10
49 33 0.13
50 77 0.30
51 9 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (50 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAAA
Found at i:81609864 original size:28 final size:29
Alignment explanation
Indices: 81609828--81609882 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
81609818 CACGGGCTGA
* *
81609828 GACAGGGGCGTGT-CGAGGCAGTGTGAGG
1 GACACGGGCGTGTGCCAGGCAGTGTGAGG
*
81609856 GACACGGGCGTGTGCCAGGCCGTGTGA
1 GACACGGGCGTGTGCCAGGCAGTGTGA
81609883 AAACCCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.16, C:0.20, G:0.49, T:0.15
Consensus pattern (29 bp):
GACACGGGCGTGTGCCAGGCAGTGTGAGG
Found at i:81611173 original size:20 final size:20
Alignment explanation
Indices: 81611148--81611185 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
81611138 GATATTAAAT
*
81611148 AGATATTTATTATTTAAAAA
1 AGATATTTATTAATTAAAAA
81611168 AGATATTTATTAATTAAA
1 AGATATTTATTAATTAAA
81611186 TAATTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
AGATATTTATTAATTAAAAA
Found at i:81612031 original size:31 final size:30
Alignment explanation
Indices: 81611996--81612067 Score: 126
Period size: 31 Copynumber: 2.4 Consensus size: 30
81611986 AATTGAATAG
81611996 AAATTCAATTATTTGTTATAATGAGTGCAGA
1 AAATTCAATTATTTGTTATAATGAGTGCA-A
*
81612027 AAATTCAATTTTTTGTTATAATGAGTGCAA
1 AAATTCAATTATTTGTTATAATGAGTGCAA
81612057 AAATTCAATTA
1 AAATTCAATTA
81612068 AAGTATGATT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 11 0.28
31 28 0.72
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (30 bp):
AAATTCAATTATTTGTTATAATGAGTGCAA
Found at i:81614567 original size:67 final size:67
Alignment explanation
Indices: 81614441--81614569 Score: 152
Period size: 67 Copynumber: 1.9 Consensus size: 67
81614431 AAAAAAATTT
* * * * * * * *
81614441 AAAAAATTGTTTGTATTGTGTTCTATTGTATTCCATGTCAATAATATATACTTATTTACAATCTA
1 AAAAAATTGTTTATATTGTATTCTACTATATTCCACGTAAATAATATATACATACTTACAATCTA
81614506 AA
66 AA
**
81614508 AAAAAATTGTTTATATTGTATTCTACTATATTTTACGTAAATAATATAT-CAATACTTACAAT
1 AAAAAATTGTTTATATTGTATTCTACTATATTCCACGTAAATAATATATAC-ATACTTACAAT
81614570 ATACCAAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
66 1 0.02
67 50 0.98
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (67 bp):
AAAAAATTGTTTATATTGTATTCTACTATATTCCACGTAAATAATATATACATACTTACAATCTA
AA
Found at i:81614610 original size:18 final size:18
Alignment explanation
Indices: 81614575--81614617 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
81614565 ACAATATACC
**
81614575 AAAAAATAAAAAGCAATG
1 AAAAAATAAAAAAAAATG
*
81614593 AAAAGATAAAAAAAAATG
1 AAAAAATAAAAAAAAATG
*
81614611 AATAAAT
1 AAAAAAT
81614618 TGATTGTTTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.14
Consensus pattern (18 bp):
AAAAAATAAAAAAAAATG
Found at i:81618005 original size:21 final size:22
Alignment explanation
Indices: 81617971--81618011 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
81617961 TTCATTTAAG
**
81617971 TTTCATTTGTACATA-ATCATA
1 TTTCATTTCCACATACATCATA
81617992 TTTCATTTCCACATACATCA
1 TTTCATTTCCACATACATCA
81618012 CAGTACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.22, G:0.02, T:0.44
Consensus pattern (22 bp):
TTTCATTTCCACATACATCATA
Found at i:81621787 original size:16 final size:16
Alignment explanation
Indices: 81621762--81621800 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81621752 GTCATAATAT
* *
81621762 TATTAATGAATTTTAA
1 TATTATTGAATGTTAA
*
81621778 TATTATTGAATGTTAT
1 TATTATTGAATGTTAA
81621794 TATTATT
1 TATTATT
81621801 TTTGAATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (16 bp):
TATTATTGAATGTTAA
Found at i:81623076 original size:26 final size:24
Alignment explanation
Indices: 81623042--81623090 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
81623032 TAAATAAAAA
* *
81623042 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
81623068 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
81623091 TTAAAACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:81624905 original size:54 final size:55
Alignment explanation
Indices: 81624822--81624933 Score: 217
Period size: 54 Copynumber: 2.1 Consensus size: 55
81624812 AAAAAAGGGT
81624822 AAAGTTAAAAATTAAAAATGATTAAAAATAAAATAAAATATTTAATGCCTGGGCC
1 AAAGTTAAAAATTAAAAATGATTAAAAATAAAATAAAATATTTAATGCCTGGGCC
81624877 AAAG-TAAAAATTAAAAATGATTAAAAATAAAATAAAATATTTAATGCCTGGGCC
1 AAAGTTAAAAATTAAAAATGATTAAAAATAAAATAAAATATTTAATGCCTGGGCC
81624931 AAA
1 AAA
81624934 AAATCTTACT
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 53 0.93
55 4 0.07
ACGTcount: A:0.56, C:0.07, G:0.11, T:0.26
Consensus pattern (55 bp):
AAAGTTAAAAATTAAAAATGATTAAAAATAAAATAAAATATTTAATGCCTGGGCC
Found at i:81628903 original size:15 final size:16
Alignment explanation
Indices: 81628885--81628916 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
81628875 AAAATGCAAA
81628885 AAAAGAAAA-AAAAAG
1 AAAAGAAAACAAAAAG
81628900 AAAAGAAAACAAAAAG
1 AAAAGAAAACAAAAAG
81628916 A
1 A
81628917 CGTGCTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.84, C:0.03, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAGAAAACAAAAAG
Found at i:81629406 original size:286 final size:282
Alignment explanation
Indices: 81628938--81629501 Score: 948
Period size: 286 Copynumber: 2.0 Consensus size: 282
81628928 GAGCAGACAA
*
81628938 TTTTTTAATTAGACTAAAATGACTTTTTTTTAAAAAAAATTTGAATATTACTATTTATATTTATG
1 TTTTTTAATTAGACTAAAATGACTTTTTTTTAAAAAAAAATTGAATATTACTATTTATATTTATG
81629003 GGTGACAAGTGTAAGAATCAAAATAATTTAACCCATTGGATCAAAGTGAATTTATTTGGACCCCA
66 GGTGACAAGTGTAAGAATCAAAATAATTTAACCCATTGGATCAAAGTGAATTTATTTGGACCCCA
* *
81629068 TGTGATGGCCTATTGATCAAAAGTGTTCATTTTCCTAAATGTAGCTTGGATTCGAGTCGCTCTAG
131 TGTGATGGCCTATTGATCAAAAGTGTTCATTGTCCTAAATGTAGCATGGATTCGAGTCGCTCTAG
* *
81629133 TCACGATTGTTGTTCAGGCTTTATCTTGTTATTGTAATTCACCAAAAAAAAATGAATTTATTTGA
196 TCACGATTGTTGTTCAGGCTTTACCTTGATATTGTAATTCACC-AAAAAAAATGAATTTATTTGA
81629198 AAAATATATTATACAAAATGACT
260 AAAATATATTATACAAAATGACT
* *
81629221 TTTTTTAATTAGACTAAAATGACTTTTTTTTTTAAAAAAAAAATTGAATGTTATTATTTATATTT
1 TTTTTTAATTAGACTAAAATGAC--TTTTTTTT-AAAAAAAAATTGAATATTACTATTTATATTT
*
81629286 ATGGGTGACAAGTGTAAGAATCAAAATAATTTGACCCATTGGATCAAAGTGAATTTATTTGGACC
63 ATGGGTGACAAGTGTAAGAATCAAAATAATTTAACCCATTGGATCAAAGTGAATTTATTTGGACC
* ** * *
81629351 CCATGTGATGGTCTATTGATCAAGGGTGTTCATTGTCCTAAGTGTAGCATGGATTCGAGTCGCTT
128 CCATGTGATGGCCTATTGATCAAAAGTGTTCATTGTCCTAAATGTAGCATGGATTCGAGTCGCTC
* *
81629416 TAGTCACGATTGTTGTTCAGGCTTTGCCTTGATATTGTAATTCACCAAAAAAAGTGAATTTATTT
193 TAGTCACGATTGTTGTTCAGGCTTTACCTTGATATTGTAATTCACCAAAAAAAATGAATTTATTT
*
81629481 GAACAATATATTATACAAAAT
258 GAAAAATATATTATACAAAAT
81629502 AAAAAACAAT
Statistics
Matches: 262, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
283 23 0.09
285 46 0.18
286 193 0.74
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (282 bp):
TTTTTTAATTAGACTAAAATGACTTTTTTTTAAAAAAAAATTGAATATTACTATTTATATTTATG
GGTGACAAGTGTAAGAATCAAAATAATTTAACCCATTGGATCAAAGTGAATTTATTTGGACCCCA
TGTGATGGCCTATTGATCAAAAGTGTTCATTGTCCTAAATGTAGCATGGATTCGAGTCGCTCTAG
TCACGATTGTTGTTCAGGCTTTACCTTGATATTGTAATTCACCAAAAAAAATGAATTTATTTGAA
AAATATATTATACAAAATGACT
Found at i:81633918 original size:22 final size:22
Alignment explanation
Indices: 81633883--81633970 Score: 113
Period size: 22 Copynumber: 4.0 Consensus size: 22
81633873 ATGAGAGTAG
* *
81633883 GATATGTTCTGATATGTTATAT
1 GATATGCTCCGATATGTTATAT
81633905 GATATGCTCCGATATGTTATAT
1 GATATGCTCCGATATGTTATAT
*
81633927 GATATGCTCCAATATGTTATAT
1 GATATGCTCCGATATGTTATAT
* * * *
81633949 AACATTCTCTGATATGTTATAT
1 GATATGCTCCGATATGTTATAT
81633971 AATAAAAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 58 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (22 bp):
GATATGCTCCGATATGTTATAT
Found at i:81634840 original size:30 final size:30
Alignment explanation
Indices: 81634806--81634886 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
81634796 GAATTGCATT
81634806 AAATCAAAATTATATATATAAATTTACAC-A
1 AAATCAAAATTATATATATAAATTT-CACTA
* * *
81634836 AAATCAAAATT-TAAATACAAAATTTCACTTT
1 AAATCAAAATTATATATA-TAAATTTCAC-TA
81634867 AAATCAAAATTA-ATATATAA
1 AAATCAAAATTATATATATAA
81634887 CTTTGAGATT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
29 8 0.19
30 19 0.45
31 15 0.36
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (30 bp):
AAATCAAAATTATATATATAAATTTCACTA
Found at i:81636352 original size:39 final size:39
Alignment explanation
Indices: 81636281--81636369 Score: 99
Period size: 39 Copynumber: 2.3 Consensus size: 39
81636271 TTAGAGGGAA
* * *
81636281 AGGGACGGTGGGAGAGAGGTAGAGAAGAGGAGTAAGGTG
1 AGGGACGGTGGGAAAGAGGGAGAGAAGAGGAGTAAGGGG
* * *
81636320 AGGGATGGTGGGAAAGAGGGAGAG-AGTTGGAGTAGGGGG
1 AGGGACGGTGGGAAAGAGGGAGAGAAG-AGGAGTAAGGGG
*
81636359 AGGGACTGTGG
1 AGGGACGGTGG
81636370 AAATGAGAGA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 2 0.05
39 39 0.95
ACGTcount: A:0.29, C:0.02, G:0.56, T:0.12
Consensus pattern (39 bp):
AGGGACGGTGGGAAAGAGGGAGAGAAGAGGAGTAAGGGG
Found at i:81638328 original size:20 final size:20
Alignment explanation
Indices: 81638303--81638398 Score: 83
Period size: 20 Copynumber: 4.8 Consensus size: 20
81638293 TACAATTTAT
81638303 TATTATTTTGAAATATGAAA
1 TATTATTTTGAAATATGAAA
* *
81638323 TATTATTTTTAAATATAAAAAA
1 TATTATTTTGAAATAT--GAAA
* *
81638345 TATT-TTATT-ACAAT-T-TAT
1 TATTATT-TTGA-AATATGAAA
81638363 TATTATTTTGAAATATGAAA
1 TATTATTTTGAAATATGAAA
*
81638383 TATTATTTTTAAATAT
1 TATTATTTTGAAATAT
81638399 TTTAAAGTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
18 10 0.16
19 4 0.07
20 31 0.51
21 4 0.07
22 12 0.20
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (20 bp):
TATTATTTTGAAATATGAAA
Found at i:81638349 original size:60 final size:60
Alignment explanation
Indices: 81638278--81638398 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
81638268 AATAAACTAC
81638278 TAAAAAATATTTTATTACAATTTATTATTATTTTGAAATATGAAATATTATTTTTAAATA
1 TAAAAAATATTTTATTACAATTTATTATTATTTTGAAATATGAAATATTATTTTTAAATA
81638338 TAAAAAATATTTTATTACAATTTATTATTATTTTGAAATATGAAATATTATTTTTAAATA
1 TAAAAAATATTTTATTACAATTTATTATTATTTTGAAATATGAAATATTATTTTTAAATA
81638398 T
1 T
81638399 TTTAAAGTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (60 bp):
TAAAAAATATTTTATTACAATTTATTATTATTTTGAAATATGAAATATTATTTTTAAATA
Found at i:81652934 original size:22 final size:22
Alignment explanation
Indices: 81652909--81652953 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
81652899 ATAATGGCAA
*
81652909 AAGAATTAAGAGTCCAAAAGAT
1 AAGAATTAAGAGTACAAAAGAT
81652931 AAGAATTAAGAGTACAAAAGAT
1 AAGAATTAAGAGTACAAAAGAT
81652953 A
1 A
81652954 GAGATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.58, C:0.07, G:0.18, T:0.18
Consensus pattern (22 bp):
AAGAATTAAGAGTACAAAAGAT
Found at i:81655526 original size:3 final size:3
Alignment explanation
Indices: 81655520--81656080 Score: 246
Period size: 3 Copynumber: 186.3 Consensus size: 3
81655510 ATTATCACTA
81655520 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATTT ACTT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT A-TT ATT
* * * * * * * * **
81655566 ATT ACT ATT ACT ATC ATT ATT ATT TTT AGT AGT AGT ATT ATT ATC ACC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * * * * *
81655614 ATT CTT TTT GTT CTT GTC CTT ACT ATT GTT ATT CTTT ATT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
* *
81655660 AAT ATT ATT ATT ATT ATTT ATT ATT ATT ACT ATT ACTT -TT ATT ATTT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT A-TT ATT ATT A-TT
* * **
81655707 ATT ATT ATT GTT ACT ATT -TCT ATT ATT ATT -TT -TCT ATT ACA ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT AT-T ATT ATT ATT
* * * * *
81655751 -TAT ATT ATT GTT GTC ATT ATT CTT TTT ATT ATT ATT ATT ATT ATT
1 AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
81655796 ATT ATT ATT ATT ATT ATT ATT TTCT ATT ATT GTT ATT ATT AGT A-T
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
* * * * *
81655841 ATT ATT ATT ATT CTT ATT AATGT ATT ATC ACT ATT ATCT -TCC ACT -TT
1 ATT ATT ATT ATT ATT ATT -AT-T ATT ATT ATT ATT AT-T AT-T ATT ATT
* * * *
81655888 ATT ATT A-T ATT ATC ACT ATT ATT ATC ATC A-T ATT AATT -TT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
* * * ** * * *
81655930 ATT A-C ATT ATAT ATT -TC CTT -TT CGT ATTT ACTC ACGTC GTT ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT A-TT A-TT A--TT ATT ATT
81655974 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * ** * *
81656022 -TT CGTT GTT GGT ATT -TGT ATC ATT ATT ATT ATT -TT CATC ATT ATT
1 ATT -ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT -ATT ATT ATT
81656067 ATT -TT -TT ATT ATT A
1 ATT ATT ATT ATT ATT A
81656081 ATGTTGTTAA
Statistics
Matches: 429, Mismatches: 91, Indels: 76
0.72 0.15 0.13
Matches are distributed among these distances:
2 32 0.07
3 355 0.83
4 39 0.09
5 3 0.01
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:81655875 original size:23 final size:23
Alignment explanation
Indices: 81655831--81655875 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
81655821 ATTATTGTTA
* * *
81655831 TTATTAGTATATTATTATTATTC
1 TTATTAATATATTATCACTATTC
*
81655854 TTATTAATGTATTATCACTATT
1 TTATTAATATATTATCACTATT
81655876 ATCTTCCACT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (23 bp):
TTATTAATATATTATCACTATTC
Found at i:81659646 original size:24 final size:24
Alignment explanation
Indices: 81659619--81659671 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
81659609 TTTATTTTGG
81659619 TATTGGTATGTATTAATATTAG-TT
1 TATTGGTATGTATT-ATATTAGATT
** *
81659643 TATTTTTATGTATTATTTTAGATT
1 TATTGGTATGTATTATATTAGATT
81659667 TATTG
1 TATTG
81659672 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.60
Consensus pattern (24 bp):
TATTGGTATGTATTATATTAGATT
Found at i:81663665 original size:6 final size:6
Alignment explanation
Indices: 81663654--81663684 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
81663644 ATTTACCTTA
*
81663654 AAATAT AAATAT AAATAT AAATAT ATATAT A
1 AAATAT AAATAT AAATAT AAATAT AAATAT A
81663685 CCCAATCGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
AAATAT
Found at i:81665791 original size:20 final size:18
Alignment explanation
Indices: 81665738--81665792 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
81665728 TTTTTAAAAT
*
81665738 AATATATTTTTATTTATA
1 AATATATTTTTATTTTTA
*
81665756 AA-ATATTTATAATTTTTA
1 AATATATTT-TTATTTTTA
81665774 ATATATATTTTTAGTTTTT
1 A-ATATATTTTTA-TTTTT
81665793 TATTTTATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 6 0.20
18 10 0.33
19 3 0.10
20 11 0.37
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATATATTTTTATTTTTA
Found at i:81668971 original size:28 final size:28
Alignment explanation
Indices: 81668940--81668999 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
81668930 TTAAGCCCCC
*
81668940 AAAAAAAAACCTAACCTAAAAAAAAAAA
1 AAAAAAAAACCTAACCCAAAAAAAAAAA
*
81668968 AAAAAAAAACCTAACCCAAAAAAAAAGA
1 AAAAAAAAACCTAACCCAAAAAAAAAAA
81668996 AAAA
1 AAAA
81669000 GAAGAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.78, C:0.15, G:0.02, T:0.05
Consensus pattern (28 bp):
AAAAAAAAACCTAACCCAAAAAAAAAAA
Found at i:81668978 original size:23 final size:23
Alignment explanation
Indices: 81668952--81668999 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
81668942 AAAAAAACCT
81668952 AACCTAAAAAAAAAAAAAAAAAA
1 AACCTAAAAAAAAAAAAAAAAAA
*** *
81668975 AACCTAACCCAAAAAAAAAGAAA
1 AACCTAAAAAAAAAAAAAAAAAA
81668998 AA
1 AA
81669000 GAAGAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.79, C:0.15, G:0.02, T:0.04
Consensus pattern (23 bp):
AACCTAAAAAAAAAAAAAAAAAA
Found at i:81669019 original size:39 final size:36
Alignment explanation
Indices: 81668957--81669043 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 36
81668947 AACCTAACCT
81668957 AAAAAAAAAAAAAAAAAAAACCTAACCCAAAAAAAAAG
1 AAAAAAAAAAAAAAAAAAAACCTAA--CAAAAAAAAAG
* * *
81668995 AAAAAGAAGAAAAAAGAAAAACCTAACAAAAAAATA-
1 AAAAA-AAAAAAAAAAAAAAACCTAACAAAAAAAAAG
*
81669031 AAAAATAAAAAAA
1 AAAAAAAAAAAAA
81669044 CCTAGCCACC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
35 6 0.14
36 5 0.12
37 9 0.21
38 5 0.12
39 18 0.42
ACGTcount: A:0.82, C:0.09, G:0.05, T:0.05
Consensus pattern (36 bp):
AAAAAAAAAAAAAAAAAAAACCTAACAAAAAAAAAG
Found at i:81669276 original size:18 final size:17
Alignment explanation
Indices: 81669237--81669275 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
81669227 CCTAAAGGTG
*
81669237 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
81669254 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
81669271 ATTTT
1 ATTTT
81669276 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:81669553 original size:29 final size:29
Alignment explanation
Indices: 81669497--81669553 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
81669487 TCTCTTCTTT
* *
81669497 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
81669526 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
81669554 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:81669813 original size:11 final size:11
Alignment explanation
Indices: 81669795--81669824 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
81669785 GTGTATATTG
81669795 TATATATTATA
1 TATATATTATA
*
81669806 TTTATATTATA
1 TATATATTATA
81669817 TATATATT
1 TATATATT
81669825 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:81682530 original size:72 final size:71
Alignment explanation
Indices: 81682410--81682593 Score: 237
Period size: 72 Copynumber: 2.5 Consensus size: 71
81682400 AAGCCTTTTT
*
81682410 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGG-TCACGCTGAGG
1 ATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGAT-ACGCTGAGG
*
81682474 TATTTTCA
64 TAATTTCA
** *
81682482 ATTTTTGTGTTTTAATTTCAACTCATATTACGAGAGGTGAGT-GAAGCCTCAGGATACGCTGAGG
1 ATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTCG-AGCCTCAGGATACGCTGAGG
81682546 TAATTTCA
64 TAATTTCA
* *
81682554 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTG
1 ATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTG
81682594 GGTTAACCTT
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
71 3 0.03
72 68 0.70
73 26 0.27
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGATACGCTGAGGTA
ATTTCA
Found at i:81682636 original size:197 final size:187
Alignment explanation
Indices: 81682240--81682676 Score: 518
Period size: 197 Copynumber: 2.3 Consensus size: 187
81682230 TCAAGGAAAC
* * * *
81682240 TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGTTGTTT
* * *
81682305 TCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTT
66 TCAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAGTTT
** * **
81682370 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAA
131 TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAA
* * * *
81682427 TCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGTTGT-T
* ** * *
81682492 TTTAATTTCAACTCATATTACGAGAGGTGAG-TGAAGCCTCAGGATACGCTGAGGTAATTTCAAT
65 TTCAAAATCAACTCATATTACGAGAAGTGAGTTG-AGCCTCAGGACACGCTGAGGT-A-TT---T
* *
81682556 TTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTAA-CCTTTTAATTTTACTTTTTC
124 TT-AGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
81682620 AAAA
184 AAAA
* * *
81682624 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
81682677 TAGTTTTAAA
Statistics
Matches: 210, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
187 57 0.27
188 45 0.21
189 1 0.00
190 2 0.01
193 3 0.01
194 4 0.02
195 1 0.00
197 70 0.33
198 27 0.13
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (187 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGTTGTTT
TCAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAGTTT
TAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAAAA
Found at i:81682780 original size:115 final size:115
Alignment explanation
Indices: 81682575--81682791 Score: 337
Period size: 115 Copynumber: 1.9 Consensus size: 115
81682565 TCAAGAATCA
*
81682575 ACTCATATTGCGAGAGGTGGGTTAACCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCGA
1 ACTCATATTGCGAGAGGTGAGTTAACCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCGA
* * *
81682640 GAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
66 GAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
** *
81682690 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTT-ATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTTAA-CCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCG
* *
81682754 AGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTT
65 AGAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTT
81682792 CAATTTTTGT
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
115 86 0.93
116 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (115 bp):
ACTCATATTGCGAGAGGTGAGTTAACCTTTTAATTTTACTTTTTCAAAATCAACTCATATTGCGA
GAAGTGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
Found at i:81682844 original size:72 final size:71
Alignment explanation
Indices: 81682722--81683104 Score: 442
Period size: 72 Copynumber: 5.2 Consensus size: 71
81682712 TAAGCCTTTT
* * * * *
81682722 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGT
1 ATTTTTG-TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
81682787 ATTTTCA
65 ATTTTCA
* **
81682794 ATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
1 ATTTTTGT-TTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
*
81682859 AATTTCA
65 ATTTTCA
* * * * * *
81682866 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCG
1 ATTTTTGTT-T--TAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTG
81682931 AGGTATTTTCA
61 AGGTATTTTCA
*
81682942 ATTTTTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
1 ATTTTTGT-TTT--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
81683007 GTAATTTCA
63 GTATTTTCA
* * ** * *
81683016 ATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 ATTTTTGTTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
81683081 ATTTTCA
65 ATTTTCA
*
81683088 ATTTCTGTTTTCAAAAA
1 ATTTTTGTTTT-AAAAA
81683105 AAACAAAAAT
Statistics
Matches: 266, Mismatches: 36, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
71 2 0.01
72 139 0.52
73 3 0.01
74 59 0.22
76 62 0.23
77 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (71 bp):
ATTTTTGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
TTTTCA
Found at i:81682889 original size:313 final size:313
Alignment explanation
Indices: 81682302--81682901 Score: 1107
Period size: 312 Copynumber: 1.9 Consensus size: 313
81682292 TTAATTGTTG
81682302 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
81682367 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
*
81682432 TCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
131 TCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
*
81682497 TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGATACGCTGAGGTAATTTCAATTTCTGT
196 TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
81682562 TTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTAACCTTTTAATTTTACT
261 TTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTAACCTTTTAATTTTACT
81682615 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
81682680 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC-TTTTATTTTTGTTTTTCAAAATCAAC
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
81682744 TCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
131 TCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
*
81682809 TTTCAACTCATATTGCGAGAGGTGAGTTG-AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
196 TTTCAACTCATATTACGAGAGGTGAG-TGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
*
81682873 -TTGTCAAAAAAATCAACTCGTATTGCGAG
260 TTTGTC--AAAAATCAACTCATATTGCGAG
81682902 CGGCGAGTTG
Statistics
Matches: 279, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
311 5 0.02
312 149 0.53
313 125 0.45
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (313 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
TCATATTGCTAGAGGTGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTAACCTTTTAATTTTACT
Found at i:81683002 original size:150 final size:146
Alignment explanation
Indices: 81682735--81683105 Score: 507
Period size: 150 Copynumber: 2.5 Consensus size: 146
81682725 TTTGTTTTTC
* * *
81682735 AAAATCAACTCATATTGCTAGAGGTGAGTCGAACCTCAGGT-CACGCTGAGGTATTTTCAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTTT
* **
81682799 TGTGTTT--TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
66 TGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
81682862 TTCAATTTCTGTTGTCAAA
130 TTCAATTTCTGTTGTC--A
* * * *
81682881 AAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCTGAGGTATTTTCAATTT
*
81682946 TTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
65 TTGT-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
*
81683011 TTTCAATTTCTGTTTTCA
129 TTTCAATTTCTGTTGTCA
* ** * * *
81683029 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTTT
81683093 TGTTTTCAAAAAA
66 TGTTTTCAAAAAA
81683106 AACAAAAATC
Statistics
Matches: 198, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
145 10 0.05
146 59 0.30
148 62 0.31
150 67 0.34
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (146 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCTGAGGTATTTTCAATTTT
TGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTCTGTTGTCA
Found at i:81683972 original size:35 final size:32
Alignment explanation
Indices: 81683909--81684011 Score: 126
Period size: 31 Copynumber: 3.3 Consensus size: 32
81683899 AGCCCCCCAA
81683909 AAAAACCTAA-CCCAAAAAAAAAAAAAAAAAG
1 AAAAACCTAACCCCAAAAAAAAAAAAAAAAAG
81683940 AAAAACCTAACCCCAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCC-AAAAAAAAA-AA-AAAAAAG
* *
81683975 AAAAACCTAA---CAAAAAAATAAAAAATAA-
1 AAAAACCTAACCCCAAAAAAAAAAAAAAAAAG
81684003 AAAAACCTA
1 AAAAACCTA
81684012 GCCACCTAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
28 9 0.14
29 5 0.08
30 2 0.03
31 18 0.27
32 4 0.06
33 9 0.14
34 2 0.03
35 17 0.26
ACGTcount: A:0.75, C:0.16, G:0.04, T:0.06
Consensus pattern (32 bp):
AAAAACCTAACCCCAAAAAAAAAAAAAAAAAG
Found at i:81684242 original size:18 final size:17
Alignment explanation
Indices: 81684203--81684241 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
81684193 CCTAAAGGTG
*
81684203 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
81684220 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
81684237 ATTTT
1 ATTTT
81684242 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:81686695 original size:25 final size:25
Alignment explanation
Indices: 81686662--81686746 Score: 143
Period size: 25 Copynumber: 3.4 Consensus size: 25
81686652 CTGGAGGCCT
*
81686662 AGCCTCTTTTGATAAACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGGCAAA
81686688 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
*
81686713 AGCCCTTTTAATAAACTAGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
81686738 AGCCCTTTT
1 AGCCCTTTT
81686747 TGCACTTCCT
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 53 0.93
26 4 0.07
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:81686817 original size:20 final size:19
Alignment explanation
Indices: 81686794--81686848 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
81686784 TTATGACTAC
81686794 ATCATGTGCATATCAAACA
1 ATCATGTGCATATCAAACA
*
81686813 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCA-AACA
81686834 ATCATGT--ATATCAAA
1 ATCATGTGCATATCAAA
81686849 ACCCATGTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 1 0.03
18 6 0.19
20 22 0.69
21 3 0.09
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (19 bp):
ATCATGTGCATATCAAACA
Found at i:81688692 original size:28 final size:28
Alignment explanation
Indices: 81688647--81688715 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81688637 ATTTAAACCC
*
81688647 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81688674 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
81688702 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
81688716 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:81690576 original size:28 final size:28
Alignment explanation
Indices: 81690511--81690611 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
81690501 ATAGTGAATC
*
81690511 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
81690540 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81690568 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
81690598 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81690612 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81698528 original size:28 final size:28
Alignment explanation
Indices: 81698463--81698563 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
81698453 ATAGTGAATC
*
81698463 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
81698492 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81698520 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
81698550 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81698564 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81700916 original size:12 final size:12
Alignment explanation
Indices: 81700899--81700923 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81700889 AGTTTCGGCT
81700899 AGAGAGGAAAAA
1 AGAGAGGAAAAA
81700911 AGAGAGGAAAAA
1 AGAGAGGAAAAA
81700923 A
1 A
81700924 ACCCTAAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (12 bp):
AGAGAGGAAAAA
Found at i:81701460 original size:20 final size:20
Alignment explanation
Indices: 81701435--81701472 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81701425 CCACATCCAA
*
81701435 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
81701455 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
81701473 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:81709161 original size:72 final size:71
Alignment explanation
Indices: 81709041--81709224 Score: 237
Period size: 72 Copynumber: 2.5 Consensus size: 71
81709031 AAGCCTTTTT
*
81709041 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTCGAGCCTCAGG-TCACGCTGAGG
1 ATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGAT-ACGCTGAGG
*
81709105 TATTTTCA
64 TAATTTCA
** *
81709113 ATTTTTGTGTTTTAATTTCAACTCATATTACGAGAGGTGAGT-GAAGCCTCAGGATACGCTGAGG
1 ATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTCG-AGCCTCAGGATACGCTGAGG
81709177 TAATTTCA
64 TAATTTCA
* *
81709185 ATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTG
1 ATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTG
81709225 GGTTAAACCT
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
71 3 0.03
72 68 0.70
73 26 0.27
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (71 bp):
ATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTCGAGCCTCAGGATACGCTGAGGTA
ATTTCA
Found at i:81709415 original size:115 final size:117
Alignment explanation
Indices: 81709206--81709424 Score: 334
Period size: 115 Copynumber: 1.9 Consensus size: 117
81709196 TCAAGAATCA
*
81709206 ACTCATATTGCGAGAGGTGGGTTAAACCTTTTAATTTTTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTAAACCTTTTAATTTTTACTTTTTCAAAATCAACTCATATTGC
* * * *
81709271 GAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
66 GAGAAGAGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
* *
81709323 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTT-ATTTTT-GTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTAAACCTTTTAATTTTTACTTTTTCAAAATCAACTCATATTGC
* * *
81709386 TAGAGGAGAGTCGAACCTCAGGTCACGCTGAGGTATTTT
66 GAGAAGAGAGTCGAACCTCAGGGCACGCTGAGGTATTTT
81709425 CAATTTTTGT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
115 56 0.61
116 6 0.07
117 30 0.33
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (117 bp):
ACTCATATTGCGAGAGGTGAGTTAAACCTTTTAATTTTTACTTTTTCAAAATCAACTCATATTGC
GAGAAGAGAGTCGAACCTCAGGGCACGCTGAGGTATTTTTAGTTTTAAATTG
Found at i:81709522 original size:315 final size:315
Alignment explanation
Indices: 81708933--81709534 Score: 1102
Period size: 314 Copynumber: 1.9 Consensus size: 315
81708923 TTAATTGTTG
81708933 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
81708998 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
* *
81709063 TCATATTGCTAGAGGTGAGTCGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
131 TCATATTGCTAGAGGAGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
*
81709128 TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGATACGCTGAGGTAATTTCAATTTCTGT
196 TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
81709193 TTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTAAACCTTTTAATTTTTACT
261 TTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTAAACCTTTTAATTTTTACT
81709248 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
81709313 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC-TTTTATTTTTGTTTTTCAAAATCAAC
66 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
81709377 TCATATTGCTAGAGGAGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
131 TCATATTGCTAGAGGAGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
*
81709442 TTTCAACTCATATTGCGAGAGGTGAGTTG-AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
196 TTTCAACTCATATTACGAGAGGTGAG-TGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
*
81709506 -TTGTCAAAAAAATCAACTCGTATTGCGAG
260 TTTGTC--AAAAATCAACTCATATTGCGAG
81709535 CGGCGAGTTG
Statistics
Matches: 278, Mismatches: 6, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
313 5 0.02
314 148 0.53
315 125 0.45
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (315 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTTATTTTTGTTTTTCAAAATCAAC
TCATATTGCTAGAGGAGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCAATTTTTGTGTTTTAA
TTTCAACTCATATTACGAGAGGTGAGTGAAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTGTCAAAAATCAACTCATATTGCGAGAGGTGGGTTAAACCTTTTAATTTTTACT
Found at i:81709616 original size:151 final size:145
Alignment explanation
Indices: 81709368--81709725 Score: 470
Period size: 151 Copynumber: 2.4 Consensus size: 145
81709358 TTTGTTTTTC
* * * *
81709368 AAAATCAACTCATATTGCTAGAGGAGAGTCGAACCTCAGGT-CACGCTGAGGTATTTTCAATTTT
1 AAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAAGTACACGCTGAGGTATTTTCAATTTT
* * **
81709432 TGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
66 TGTCTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
81709497 CAATTTCTGTTGTCAAA
131 CAATTTCTGTTGTC--A
* * * *
81709514 AAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAAGTCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAAGT-ACACGCTGAGGTATTTTCAATTT
**
81709579 TTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTA
65 TTGTCTTT---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
*
81709644 ATTTCAATTTCTGTTTTCA
127 ATTTCAATTTCTGTTGTCA
* * *
81709663 AAATTCAACTCATATTGCGAGA-AATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGA-GAGTTGAGCCTCAAGTACACGCTGAGGTATTTTCAATTT
81709726 CTATTTTCAA
Statistics
Matches: 184, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
146 34 0.18
147 21 0.11
148 28 0.15
149 35 0.19
151 66 0.36
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (145 bp):
AAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAAGTACACGCTGAGGTATTTTCAATTTT
TGTCTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
CAATTTCTGTTGTCA
Found at i:81709726 original size:72 final size:72
Alignment explanation
Indices: 81709363--81709737 Score: 430
Period size: 72 Copynumber: 5.1 Consensus size: 72
81709353 TTATTTTTGT
* * * * *
81709363 TTTTC-AAAATCAACTCATATTGCTAGAGGAGAGTCGAACCTCAGGTCACGCTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
81709427 ATTTTTG
66 ATTTCTG
* ** *
81709434 TGTTT-TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 T-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
81709498 AATTTCTG
65 AATTTCTG
* * * * * *
81709506 TTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAAGTCACACGCCGAGGTATT
1 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACACGCTGAGGTATT
*
81709571 TTCAATTTTTG
62 TTCAATTTCTG
** *
81709582 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTAATT
1 T-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
81709647 TCAATTTCTG
63 TCAATTTCTG
* ** * *
81709657 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
*
81709722 ATTTCTA
66 ATTTCTG
81709729 TTTTCAAAA
1 TTTTCAAAA
81709738 CAAAAAAAAA
Statistics
Matches: 257, Mismatches: 39, Indels: 15
0.83 0.13 0.05
Matches are distributed among these distances:
71 3 0.01
72 128 0.50
74 36 0.14
75 26 0.10
76 25 0.10
77 39 0.15
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (72 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCA
ATTTCTG
Found at i:81709742 original size:151 final size:150
Alignment explanation
Indices: 81709444--81709784 Score: 429
Period size: 151 Copynumber: 2.2 Consensus size: 150
81709434 TGTTTTAATT
81709444 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
* ***
81709509 TCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAAGTCACACGCCGAGGTATTTTC
66 TC-AAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAG-CACACGCCGAGGTATTTTC
* *
81709574 AATTTTTGTCTTTC-AAAAAAA
129 AATTTCTATCTTTCAAAAAAAA
** *
81709595 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTAATTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
* * **
81709660 TC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAA
66 TCAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGCACACGCCGAGGTATTTTCAA
81709723 TTTCTAT-TTTCAAAACAAAAAAAAAAA
131 TTTCTATCTTT-----C---AAAAAAAA
* *
81709750 TCAACTCATATTGTGAGAGGTGAGTTGAGCTTCAG
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
81709785 ATCACACACT
Statistics
Matches: 164, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
146 3 0.02
147 23 0.14
149 35 0.21
151 65 0.40
155 38 0.23
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (150 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTG
TCAAAAAATCAACTCATATTGCGAGAAACGAGTTGAGCCTCAAGCACACGCCGAGGTATTTTCAA
TTTCTATCTTTCAAAAAAAA
Found at i:81710585 original size:34 final size:32
Alignment explanation
Indices: 81710543--81710617 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 32
81710533 TAAGCCCCCC
*
81710543 AAAAAAAACCTAACCCCCCAAAAAAAA-AAAAAG
1 AAAAAAAACCTAA--CCCAAAAAAAAAGAAAAAG
81710576 AAAAGAAAACCTAACCCAAAAAAAAAGAAAAAG
1 AAAA-AAAACCTAACCCAAAAAAAAAGAAAAAG
81710609 AAGAAAAAA
1 AA-AAAAAA
81710618 GAAAAACCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
32 11 0.29
33 16 0.42
34 11 0.29
ACGTcount: A:0.73, C:0.17, G:0.07, T:0.03
Consensus pattern (32 bp):
AAAAAAAACCTAACCCAAAAAAAAAGAAAAAG
Found at i:81710624 original size:39 final size:35
Alignment explanation
Indices: 81710546--81710643 Score: 103
Period size: 34 Copynumber: 2.8 Consensus size: 35
81710536 GCCCCCCAAA
***
81710546 AAAAACCTAACCCCCCAAAAAAAAAAAAAGAAAAG
1 AAAAACCTAACCCAAAAAAAAAAAAAAAAGAAAAG
81710581 -AAAACCTAACCCAAAAAAAAAGAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCAAAAAAAAA-AAAAA-AAG--AAAAG
*
81710619 AAAAACCTAA--CAAAAAAATAAAAAA
1 AAAAACCTAACCCAAAAAAAAAAAAAA
81710644 TAAAAAACCT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
34 18 0.33
35 5 0.09
36 8 0.15
37 9 0.17
38 5 0.09
39 9 0.17
ACGTcount: A:0.73, C:0.16, G:0.06, T:0.04
Consensus pattern (35 bp):
AAAAACCTAACCCAAAAAAAAAAAAAAAAGAAAAG
Found at i:81710633 original size:27 final size:27
Alignment explanation
Indices: 81710603--81710654 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
81710593 AAAAAAAAAG
*
81710603 AAAAAGAAGAAAAAA-GAAAAACCTAAC
1 AAAAA-AAGAAAAAATAAAAAACCTAAC
*
81710630 AAAAAAATAAAAAATAAAAAACCTA
1 AAAAAAAGAAAAAATAAAAAACCTA
81710655 GCCACCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.77, C:0.10, G:0.06, T:0.08
Consensus pattern (27 bp):
AAAAAAAGAAAAAATAAAAAACCTAAC
Found at i:81710882 original size:18 final size:17
Alignment explanation
Indices: 81710843--81710881 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
81710833 CCTAAAGGTG
*
81710843 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
81710860 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
81710877 ATTTT
1 ATTTT
81710882 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:81711146 original size:29 final size:29
Alignment explanation
Indices: 81711090--81711146 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
81711080 TCTCTTCTTT
* *
81711090 TTTCATTTATTTTTCGTATTTACCTTAGA
1 TTTCATTTATTTTGCGTATTTAACTTAGA
*
81711119 TTTCATATTATTTTGC-TATTTAATTTAG
1 TTTCAT-TTATTTTGCGTATTTAACTTAG
81711147 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.60
Consensus pattern (29 bp):
TTTCATTTATTTTGCGTATTTAACTTAGA
Found at i:81711409 original size:11 final size:11
Alignment explanation
Indices: 81711391--81711420 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
81711381 GTGTATATTG
81711391 TATATATTATA
1 TATATATTATA
*
81711402 TTTATATTATA
1 TATATATTATA
81711413 TATATATT
1 TATATATT
81711421 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:81711932 original size:6 final size:6
Alignment explanation
Indices: 81711914--81711956 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
81711904 TTGGTATGTC
* * *
81711914 ATGTAT ATATAT ATGTAT ATGTAT ATGTAT GT-TTT ATGTAT AT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT AT
81711957 ATTGTTATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
5 3 0.10
6 27 0.90
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (6 bp):
ATGTAT
Found at i:81714920 original size:30 final size:30
Alignment explanation
Indices: 81714864--81714980 Score: 121
Period size: 30 Copynumber: 3.9 Consensus size: 30
81714854 TGTAATTTTT
* * *
81714864 AGAAAATTTA-GGGTTAAAATGCAATTTAA
1 AGAAAGTTTAGGGGTCAAAATGAAATTTAA
* ** *
81714893 TGAAAGTTTAGGGGTTTAAGTGAAATTTAA
1 AGAAAGTTTAGGGGTCAAAATGAAATTTAA
*
81714923 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAGTTTAGGGGTCAAAATGAAATTTAA
* *
81714952 GGAAAAGTTTAGGGGTCAAAATGTAATTT
1 AG-AAAGTTTAGGGGTCAAAATGAAATTT
81714981 TTATTTTTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
29 10 0.14
30 63 0.86
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.32
Consensus pattern (30 bp):
AGAAAGTTTAGGGGTCAAAATGAAATTTAA
Found at i:81714980 original size:60 final size:59
Alignment explanation
Indices: 81714851--81714980 Score: 145
Period size: 60 Copynumber: 2.2 Consensus size: 59
81714841 TTCTGGGGCT
** * * * **
81714851 AAATGTAATTTTTAGAAAATTTAGGGTTAAAATGCAATTTAATGAAAGTTTAGGGGTTT
1 AAATGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGGAAAGTTTAGGGGTCA
* * *
81714910 AAGTGAAATTTAAAGAAAGTTTAAGGGTCAAAATGAAATTT-AGGAAAAGTTTAGGGGTCA
1 AAATGTAATTTAAAGAAAATTT-AGGGTCAAAATGAAATTTAAGG-AAAGTTTAGGGGTCA
81714970 AAATGTAATTT
1 AAATGTAATTT
81714981 TTATTTTTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
59 19 0.33
60 38 0.67
ACGTcount: A:0.42, C:0.02, G:0.22, T:0.34
Consensus pattern (59 bp):
AAATGTAATTTAAAGAAAATTTAGGGTCAAAATGAAATTTAAGGAAAGTTTAGGGGTCA
Found at i:81715435 original size:54 final size:54
Alignment explanation
Indices: 81715250--81715684 Score: 673
Period size: 54 Copynumber: 8.1 Consensus size: 54
81715240 CACATGAGCC
* * *
81715250 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAATAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AA
81715305 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG--A--AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
81715355 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
81715409 AAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* * *
81715463 AAGGCTCAACTCACCTCTTGCAATATGAGTTGGTTTTTTTGAAAAACAGAAACTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAATTAA
* *
81715519 AATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAACTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
*
81715573 AAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
* *
81715627 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AA
81715682 AAG
1 AAG
81715685 TAGAAATTGA
Statistics
Matches: 353, Mismatches: 19, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
50 48 0.14
52 1 0.00
54 204 0.58
55 45 0.13
56 55 0.16
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (54 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAA
Found at i:81715568 original size:164 final size:160
Alignment explanation
Indices: 81715250--81715676 Score: 671
Period size: 164 Copynumber: 2.6 Consensus size: 160
81715240 CACATGAGCC
* * *
81715250 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAATAGAATTTGCAAAAGGCTCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAGGCTCAA
81715314 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAG--AAAAAGGCTCAACTCACCTCTCGCA
64 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAAAAGGCTCAACTCACCTCTCGCA
* *
81715377 ATATGAGTTGGTTTTTGAAAAACAGAAATTAA
129 ATATGAGTTGATTTTTGAAAAACAGAAACTAA
*
81715409 AAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
* * *
81715474 CACCTCTTGCAATATGAGTTGGTTTTTTTGAAAAACAGAAACTAAAATGCTCAACTCACCTCTCG
66 CACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACAGAAA--AAAAGGCTCAACTCACCTCTCG
81715539 CAATATGAGTTGATTTTTGAAAAACAGAAACTAA
127 CAATATGAGTTGATTTTTGAAAAACAGAAACTAA
*
81715573 AAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
* *
81715638 CACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAA
66 CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA
81715677 TTGAAAAGTA
Statistics
Matches: 246, Mismatches: 15, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
158 32 0.13
159 38 0.15
160 24 0.10
162 17 0.07
163 1 0.00
164 134 0.54
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (160 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAAAAAAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTGAAAAACAGAAACTAA
Found at i:81715682 original size:14 final size:14
Alignment explanation
Indices: 81715663--81715697 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
81715653 GAGTTGATTT
81715663 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
*
81715677 TTGAAAAGTAGAAA
1 TTGAAAAATAGAAA
81715691 TTGAAAA
1 TTGAAAA
81715698 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:81715927 original size:176 final size:174
Alignment explanation
Indices: 81715628--81716266 Score: 663
Period size: 176 Copynumber: 3.7 Consensus size: 174
81715618 AGAAATTAAA
* * *
81715628 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATT-GAAAAGTAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTG-AAAACAG-AATTAG-AAAGCAGAAAT
* * * *
81715692 TGAAAATACCTCAGCGTGCCCTGAGGCTTAACTTACCTCTTGCAATATGAGCTGATTTTTTTTGA
62 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGA
* * *
81715757 AACACAGAAATT-AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCCG
126 AAAACAGAAATTAAAAAACAGAAATTGAAAACACCTCAGC-TGTGGCCCG
* * *
81715806 AGACTCAACTCATCTCTCGTAATATGAGTTGA-TTTGAAAAGCAGAATTAGTAAAGCAGAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-CAGAATTAG-AAAGCAGAAATTG
*
81715870 AAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAA
64 AAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
* * * * *
81715933 ACATAGATTGAAAAAAACATAAATTGAAAATACCTCAACATGTGAG-CCG
129 ACAGAAATT--AAAAAACAGAAATTGAAAACACCTCAGC-TGTG-GCCCG
* *
81715982 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATCGAGAAA-CAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGA-AAACA-GAAT-TAGAAAGCAGAAAT
* * *
81716046 TGAAAATACCTCAGTGTGCCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAA
62 TGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * * **
81716111 AAACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGC-GT--CTTG
127 AAACAGAAATTAAAAAACAGAAATTGAAAACACCTCAGCTGTGGCCCG
* *
81716156 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTT----------TTTGAAAGACAGAAATTGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAATTAGAAAG-CAGAAATTGA
* * * *
81716211 AAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTTTCGCAATATGAGTTGATTTTT
65 AAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
81716267 GAAAAATAAA
Statistics
Matches: 396, Mismatches: 49, Indels: 49
0.80 0.10 0.10
Matches are distributed among these distances:
160 4 0.01
161 24 0.06
162 36 0.09
173 20 0.05
174 32 0.08
175 8 0.02
176 128 0.32
177 1 0.00
178 115 0.29
179 9 0.02
180 19 0.05
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (174 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAATTAGAAAGCAGAAATTGAA
AATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAC
AGAAATTAAAAAACAGAAATTGAAAACACCTCAGCTGTGGCCCG
Found at i:81715962 original size:15 final size:16
Alignment explanation
Indices: 81715929--81715962 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
81715919 TTGATTTTTG
*
81715929 AAAAACATAGATTGAA
1 AAAAACATAAATTGAA
81715945 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
81715961 AA
1 AA
81715963 TACCTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.68, C:0.06, G:0.09, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:81716129 original size:14 final size:14
Alignment explanation
Indices: 81716106--81716140 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
81716096 GTTGATTTTT
81716106 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
81716120 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
81716134 TGGAAAA
1 TTGAAAA
81716141 CACCTCAGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:81716193 original size:87 final size:85
Alignment explanation
Indices: 81715628--81716213 Score: 631
Period size: 87 Copynumber: 6.7 Consensus size: 85
81715618 AGAAATTAAA
* * *
81715628 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAGTAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA-CAGAAATT
81715693 GAAAATACCTCAGCGTGCCCTG
65 GAAAATACCTCAGCGTGCCC-G
* * * * * * *
81715715 AGGCTTAACTTACCTCTTGCAATATGAGCTGATTTTTTTTGAAACACAGAAATTAAAAACAGAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAACAGAAATTGAAAACAGAAA
*
81715780 TTGAAAAGACCTCAGCGTGTGGCCCG
63 TTGAAAATACCTCAGC--GT-GCCCG
* * * * *
81715806 AGACTCAACTCATCTCTCGTAATATGAGTTGA--TTTGAAAAGCAG-AATTAGTAAAGCAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-G-AAAACAGAAAT
*
81715868 TGAAAATACCTCAGCGTGCCTTG
64 TGAAAATACCTCAGCGTGCC-CG
* * *
81715891 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAGATTGAAAAAAACATAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG---AAAACAGAAA
* *
81715956 TTGAAAATACCTCAACATGTGAGCCG
63 TTGAAAATACCTCAGC--GTG-CCCG
* * *
81715982 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATCGAGAAACAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGA-AAACAGAAATT
*
81716047 GAAAATACCTCAGTGTGCCCCG
65 GAAAATACCTCAGCGTG-CCCG
*
81716069 AGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAGAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAA-AACAGAAA
* * **
81716134 TGGAAAACACCTCAGCGT-CTTG
63 TTGAAAATACCTCAGCGTGCCCG
* *
81716156 AGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAA
81716214 TACCTCAACG
Statistics
Matches: 421, Mismatches: 57, Indels: 43
0.81 0.11 0.08
Matches are distributed among these distances:
84 3 0.01
85 36 0.09
86 12 0.03
87 153 0.36
88 5 0.01
89 105 0.25
90 21 0.05
91 81 0.19
92 5 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.27
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAACAGAAATTG
AAAATACCTCAGCGTGCCCG
Found at i:81716378 original size:75 final size:75
Alignment explanation
Indices: 81716120--81716634 Score: 660
Period size: 75 Copynumber: 7.0 Consensus size: 75
81716110 AAAACAGAAA
* * * * *
81716120 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
81716183 GTTGATTTTT
66 GTTGATTTTT
* *
81716193 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTTTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
81716257 GTTGA--TTT
66 GTTGATTTTT
* * * *
81716265 TTG-AAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAA-TACACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACT-CACCTCTCGCAATATG
81716327 AGTTGATTTTT
65 AGTTGATTTTT
*
81716338 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
81716403 GTTGA--TTT
66 GTTGATTTTT
* * * * *
81716411 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
81716476 GTTGATTTTT
66 GTTGATTTTT
* *** *
81716486 TTGAAAAACAGAAATTGAAAACACCTCAACGTGTGAAACGAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATAT
81716551 GAGTTGATTTTT
64 GAGTTGATTTTT
* ** * * *
81716563 TT---TATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
81716625 GTTGATTTTT
66 GTTGATTTTT
81716635 GAAAAATAAA
Statistics
Matches: 385, Mismatches: 44, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
69 1 0.00
70 35 0.09
71 21 0.05
72 43 0.11
73 96 0.25
74 45 0.12
75 104 0.27
76 1 0.00
77 39 0.10
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:81716777 original size:84 final size:84
Alignment explanation
Indices: 81716571--81716803 Score: 335
Period size: 84 Copynumber: 2.8 Consensus size: 84
81716561 TTTTTATGAT
* *
81716571 AAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
81716636 AAAAATAAATTAAAACACAA
66 AAAAATAAATT-AAACACAA
* * * **
81716656 AAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
* *
81716721 AAAAACATAAATT-GA-ACAG
65 AAAAA-ATAAATTAAACACAA
*
81716740 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
81716804 TGATGATCGA
Statistics
Matches: 132, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
84 62 0.47
85 59 0.45
86 4 0.03
87 7 0.05
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (84 bp):
AAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
AAAAATAAATTAAACACAA
Found at i:81716873 original size:240 final size:236
Alignment explanation
Indices: 81716418--81717145 Score: 844
Period size: 240 Copynumber: 3.0 Consensus size: 236
81716408 TTTTTGACAA
81716418 ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAAAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* * ***
81716483 TTT---TTGAAA---AACAGAAATTGAAAACACCTCAACGTGTGAAACGAGGCTCAACTCACCTC
65 TTTAAAAT-AAATTGAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTC
* * *
81716542 TTGCAATATGAGTTGATTTTTTTTATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAAC
127 TCGCAATATGAGTTGATTTTTTTGATGATAGATTGAAAATACCTCAATGTGACTTGAGGCTCAAC
81716607 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAAC
192 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAAC
* *
81716652 ACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAAAAATTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
81716717 TTTAAAAAACATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
65 TTT---AAA-ATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
*
81716782 CTCGCAATATGAGTTGA-TTTTTTGATGATCGATTGAAAATACCTCAATGTGACTTGAGGCTCAA
126 CTCGCAATATGAGTTGATTTTTTTGATGATAGATTGAAAATACCTCAATGTGACTTGAGGCTCAA
*** ** *** * *
81716846 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTGAAAG
191 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAAC
* * * *
81716892 GCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAAAAATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* **
81716957 TTTGACAAATAAATTGACAAACGAAAATTGAAAATACCTC-A-GCATCTTGAGGCTCAACTCACC
65 TTT-A-AAATAAATTGA-ACA-G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACC
*
81717020 TCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGATAGAAATTGAAAATACCTCAACG
125 TCTCGCAATATGAGTTGATTTTTTTGA--------T----GATAG--ATTGAAAATACCTCAATG
* *
81717085 TGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAAATTGAAAA
176 TGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATT-AAAA
81717146 TACCTCAGCA
Statistics
Matches: 418, Mismatches: 44, Indels: 43
0.83 0.09 0.09
Matches are distributed among these distances:
234 63 0.15
235 2 0.00
238 10 0.02
239 42 0.10
240 153 0.37
241 50 0.12
243 27 0.06
248 1 0.00
252 4 0.01
254 63 0.15
255 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (236 bp):
ACAAAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTAAAATAAATTGAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGATGATAGATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAAC
Found at i:81716890 original size:71 final size:71
Alignment explanation
Indices: 81716742--81716875 Score: 250
Period size: 71 Copynumber: 1.9 Consensus size: 71
81716732 TTGAACAGAA
*
81716742 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
1 ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
81716807 TGATCG
66 TGATCG
*
81716813 ATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
81716876 TGATTTTTTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (71 bp):
ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
TGATCG
Found at i:81716909 original size:85 final size:85
Alignment explanation
Indices: 81716813--81717128 Score: 433
Period size: 85 Copynumber: 3.7 Consensus size: 85
81716803 TTGATGATCG
*
81716813 ATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
1 ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
*
81716878 ATTTTTTTTGAAAGGCAGAA
66 ATTTTTTTTGAAAGACAGAA
* ***
81716898 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
1 ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
** ***
81716963 AAATAAATTGACAA-AC-GAAA
66 ATTTTTTTTGA-AAGACAG-AA
* *
81716983 ATTGAAAATACCTCAGCAT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
1 ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
*
81717046 ATTTTTTTTTGAAAGATAGAA
66 A-TTTTTTTTGAAAGACAGAA
* *
81717067 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
81717129 GAAAAATAAA
Statistics
Matches: 199, Mismatches: 25, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
83 44 0.22
84 26 0.13
85 87 0.44
86 42 0.21
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (85 bp):
ATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
ATTTTTTTTGAAAGACAGAA
Found at i:81717016 original size:168 final size:169
Alignment explanation
Indices: 81716834--81717142 Score: 575
Period size: 169 Copynumber: 1.8 Consensus size: 169
81716824 CTCAATGTGA
*
81716834 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-TTTTTTTTGAAAGGCAGAA
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAA
* *
81716898 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
66 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
81716963 AAATAAATTGACAAACGAAAATTGAAAATACCTCAGCAT
131 AAATAAATTGACAAACGAAAATTGAAAATACCTCAGCAT
*
81717002 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGATAGAA
1 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAA
81717067 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
66 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
81717132 AAATAAATTGA
131 AAATAAATTGA
81717143 AAATACCTCA
Statistics
Matches: 136, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
168 45 0.33
169 91 0.67
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (169 bp):
CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAA
ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA
AAATAAATTGACAAACGAAAATTGAAAATACCTCAGCAT
Found at i:81717069 original size:325 final size:326
Alignment explanation
Indices: 81715628--81717199 Score: 1391
Period size: 325 Copynumber: 4.9 Consensus size: 326
81715618 AGAAATTAAA
* * **
81715628 AGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAATAGAAATTGAAAAGTAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAT--AAATTGAAAAACAGAAATT
* * * * *
81715693 GAAAATACCTCAGCGTGCCCTGAGGCTTAACTTACCTCTTGCAATATGAGCTGATTTTTTTTGAA
64 GAAAATACCTCAGCGT-CCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG--
* * * * * * ** * *
81715758 ACACAGAAATTAAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCCGAGACTCAACTCATCTCT
125 A-ACATAAATTGAAGACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCT
* **** * * *
81715823 CGTAATATGAGTTGATTTGAAAAGCAGAATTAGTAAAGCAGAAATTGAAAATACCTCAGCGTGCC
187 CGCAATATGAGTTGATTT----TTTTG-A--A--AAATCAG-AATTGAAAATACCTCAACGTGAC
* ***** *
81715888 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAGA-TTGAAAAAAACA
242 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--------TTGATTTTTTTTAAAGA
*
81715952 TAAATTGAAAATACCTCAACATGTGAGC-CG
299 TAAATTGAAAATACCTCAAC--GTGA-CTTG
* *
81715982 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATCGAGAAACAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC-AA-ATAAATTGAAAAACAGAAATT
* *
81716047 GAAAATACCTCAGTGTGCCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGAAA
64 GAAAATACCTCAGCGT-CCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG---
* * * * *
81716112 AACAGAAATTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCG
125 AACATAAATTGAAG-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
* *
81716175 CAATATGAGTTGATTTTTTTGAAAGA-CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
189 CAATATGAGTTGATTTTTTTGAAAAATCAG-AATTGAAAATACCTCAACGTGACTTGAGGCTCAA
* *
81716239 CTCA-CTTTCGCAATATGAGTTGA--TTTTTGA--------AAA-ATAAATTGAAAATACCTCAG
253 CTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTAAAGATAAATTGAAAATACCTCAA
* *
81716292 CGTGCCCTG
318 CGTGACTTG
81716301 AGGCTCAA-TACACCTCTCGCAATATGAGTTGA-TTTT------T---TTGAAAAACAGAAATTG
1 AGGCTCAACT-CACCTCTCGCAATATGAGTTGATTTTTGACAAATAAATTGAAAAACAGAAATTG
* * ** *
81716355 AAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGA--TTTTTG-AC-
65 AAAATACCTCAGCGT-CCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACA
* * * *
81716416 -------AA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
129 TAAATTGAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
* ***
81716473 TGAGTTGATTTTTTTGAAAAA-CAGAAATTGAAAACACCTCAACGTGTGAAACGAGGCTCAACTC
194 TGAGTTGATTTTTTTGAAAAATCAG-AATTGAAAATACCTCAAC--GTGACTTGAGGCTCAACTC
* * *
81716537 ACCTCTTGCAATATGA---G------TTGATTTTTTTT-ATGATAAATTGAAAATACCTCAATGT
256 ACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTAAAGATAAATTGAAAATACCTCAACGT
81716592 GACTTG
321 GACTTG
* *
81716598 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAATT-AAAACACAAAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAATAAATTGAAAA-ACAGAAATTG
* ***
81716662 ACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAAC
65 AAAATACCTCAGCGT-CCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTGAAC
81716727 ATAAATTG-A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
128 ATAAATTGAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
** *
81716790 ATGAGTTGA-TTTTTTG-ATGATC-G-ATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCAC
193 ATGAGTTGATTTTTTTGAAAAATCAGAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCAC
*
81716851 CTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTGAAAGGCAGAAATTGAAAATACCTCAACG
258 CTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTT-AAA-G-ATAAATTGAAAATACCTCAACG
*
81716916 TGTCTTG
320 TGACTTG
*
81716923 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAATAAATTGACAAAC-GAAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAATAAATTGAAAAACAG-AAATTG
* ** ***
81716987 AAAATACCTCAGCAT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTT
65 AAAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAT
*** * *
81717051 TTTTTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATA
130 AAATTG-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
* * * *
81717116 TGAGTTGA--TTTTTGAAAAAT-A-AATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACC
194 TGAGTTGATTTTTTTGAAAAATCAGAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACC
*
81717177 TCTTGCAATATGAGTTGATTTTT
259 TCTCGCAATATGAGTTGATTTTT
81717200 GACAAACATA
Statistics
Matches: 1036, Mismatches: 116, Indels: 161
0.79 0.09 0.12
Matches are distributed among these distances:
289 4 0.00
291 16 0.02
293 73 0.07
295 16 0.02
296 13 0.01
297 55 0.05
298 5 0.00
301 2 0.00
304 1 0.00
305 6 0.01
306 4 0.00
307 121 0.12
309 3 0.00
310 1 0.00
311 2 0.00
312 31 0.03
314 15 0.01
315 1 0.00
316 3 0.00
317 8 0.01
318 66 0.06
319 34 0.03
321 32 0.03
322 8 0.01
323 40 0.04
324 8 0.01
325 215 0.21
326 3 0.00
329 3 0.00
337 3 0.00
339 18 0.02
340 40 0.04
341 2 0.00
343 1 0.00
345 1 0.00
346 1 0.00
350 33 0.03
352 3 0.00
353 19 0.02
354 122 0.12
355 2 0.00
356 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (326 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAATAAATTGAAAAACAGAAATTGA
AAATACCTCAGCGTCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACATA
AATTGAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAAAATCAGAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTGATTTTTTTTAAAGATAAATTGAAAATACCTCAACGTGACTT
G
Found at i:81717144 original size:71 final size:72
Alignment explanation
Indices: 81717051--81717217 Score: 237
Period size: 71 Copynumber: 2.3 Consensus size: 72
81717041 TTTTGATTTT
* * * * *
81717051 TTTTTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATA
1 TTTTTGAAA-ACATAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCACAATA
81717116 TGAGTTGA
65 TGAGTTGA
* **
81717124 TTTTTGAAAA-ATAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTTGCAATAT
1 TTTTTGAAAACATAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCACAATAT
81717188 GAGTTGA
66 GAGTTGA
81717195 TTTTTGACAAACATAAATTGAAA
1 TTTTTGA-AAACATAAATTGAAA
81717218 CATCAAAATA
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 61 0.72
72 4 0.05
73 20 0.24
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31
Consensus pattern (72 bp):
TTTTTGAAAACATAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCACAATAT
GAGTTGA
Found at i:81718817 original size:14 final size:14
Alignment explanation
Indices: 81718794--81718831 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
81718784 GACCTCTCCA
81718794 TTTTCTTTTCTTTCT
1 TTTTC-TTTCTTTCT
81718809 TTTTCTTTCTTTCT
1 TTTTCTTTCTTTCT
81718823 TTTTGCTTT
1 TTTT-CTTT
81718832 TGAATGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTCTTTCTTTCT
Found at i:81719403 original size:8 final size:8
Alignment explanation
Indices: 81719390--81719426 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
81719380 TTGATCTCTC
81719390 TTTTTTTG
1 TTTTTTTG
81719398 TTTTTTTG
1 TTTTTTTG
81719406 TTTTTTTTG
1 -TTTTTTTG
*
81719415 TTTTTTTC
1 TTTTTTTG
81719423 TTTT
1 TTTT
81719427 CATGACTGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (8 bp):
TTTTTTTG
Found at i:81719404 original size:9 final size:9
Alignment explanation
Indices: 81719390--81719421 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
81719380 TTGATCTCTC
81719390 TTTTTTTG-
1 TTTTTTTGT
81719398 TTTTTTTGT
1 TTTTTTTGT
81719407 TTTTTTTGT
1 TTTTTTTGT
81719416 TTTTTT
1 TTTTTT
81719422 CTTTTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:81719412 original size:17 final size:17
Alignment explanation
Indices: 81719390--81719426 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
81719380 TTGATCTCTC
*
81719390 TTTTTTTGTTTTTTTGT
1 TTTTTTTGTTTTTTTCT
81719407 TTTTTTTGTTTTTTTCT
1 TTTTTTTGTTTTTTTCT
81719424 TTT
1 TTT
81719427 CATGACTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (17 bp):
TTTTTTTGTTTTTTTCT
Found at i:81724631 original size:29 final size:29
Alignment explanation
Indices: 81724585--81724714 Score: 111
Period size: 30 Copynumber: 4.4 Consensus size: 29
81724575 TTCTGGGGCT
* *
81724585 AAATGTAATTTTTAGAAAATTTA-GGGTTA
1 AAATGAAATTTAT-GAAAATTTAGGGGTTA
* *
81724614 AAATGTAATTTAATGAAAGTTTAGGGGTCT-
1 AAATGAAATTT-ATGAAAATTTAGGGGT-TA
* * * *
81724644 AAGTGAAATTTAAAGAAAGTTTAAGGGTTA
1 AAATGAAATTT-ATGAAAATTTAGGGGTTA
*
81724674 AAATGAAATTTATGAAAAGTTTAGGGGTCA
1 AAATGAAATTTATGAAAA-TTTAGGGGTTA
*
81724704 AAATGCAATTT
1 AAATGAAATTT
81724715 TTATTTTTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
29 25 0.30
30 58 0.69
31 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.35
Consensus pattern (29 bp):
AAATGAAATTTATGAAAATTTAGGGGTTA
Found at i:81724656 original size:30 final size:31
Alignment explanation
Indices: 81724599--81724714 Score: 127
Period size: 30 Copynumber: 3.9 Consensus size: 31
81724589 GTAATTTTTA
* *
81724599 GAAAATTTA-GGGT-TAAAATGTAATTTAAT
1 GAAAGTTTAGGGGTCTAAAATGAAATTTAAT
* *
81724628 GAAAGTTTAGGGGTCT-AAGTGAAATTTAAA
1 GAAAGTTTAGGGGTCTAAAATGAAATTTAAT
*
81724658 GAAAGTTTAAGGGT-TAAAATGAAATTT-AT
1 GAAAGTTTAGGGGTCTAAAATGAAATTTAAT
*
81724687 GAAAAGTTTAGGGGTC-AAAATGCAATTT
1 G-AAAGTTTAGGGGTCTAAAATGAAATTT
81724715 TTATTTTTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
29 11 0.15
30 61 0.84
31 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (31 bp):
GAAAGTTTAGGGGTCTAAAATGAAATTTAAT
Found at i:81724714 original size:60 final size:59
Alignment explanation
Indices: 81724598--81724714 Score: 164
Period size: 60 Copynumber: 2.0 Consensus size: 59
81724588 TGTAATTTTT
* * *
81724598 AGAAAATTTAGGGTTAAAATGTAATTTAATGAAAGTTTAGGGGTCTAAGTGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAATGAAAGTTTAGGGGTCAAAATGAAATTTAA
* *
81724657 AGAAAGTTTAAGGGTTAAAATGAAATTT-ATGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAATTT-AGGGTTAAAATGAAATTTAATG-AAAGTTTAGGGGTCAAAATGAAATTT
81724715 TTATTTTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
59 11 0.22
60 40 0.78
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.32
Consensus pattern (59 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAATGAAAGTTTAGGGGTCAAAATGAAATTTAA
Found at i:81724928 original size:52 final size:52
Alignment explanation
Indices: 81724834--81724969 Score: 211
Period size: 52 Copynumber: 2.6 Consensus size: 52
81724824 ATATCCCGAA
*
81724834 TATGGTCTTATAC-AGAATCACATTATCACATCACACCGATGCCATAGCCCAGC
1 TATGGTCTTATACGGGAA-CACA-TATCACATCACACCGATGCCATAGCCCAGC
**
81724887 TATGGTCTTATACGGGAACACATATCACATTGCACCGATGCCATAGCCCAGC
1 TATGGTCTTATACGGGAACACATATCACATCACACCGATGCCATAGCCCAGC
*
81724939 TATGGTCTTATACGGGCACACATATCACATC
1 TATGGTCTTATACGGGAACACATATCACATC
81724970 TTTTCCGTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
52 57 0.74
53 17 0.22
54 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (52 bp):
TATGGTCTTATACGGGAACACATATCACATCACACCGATGCCATAGCCCAGC
Found at i:81725623 original size:22 final size:23
Alignment explanation
Indices: 81725580--81725623 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
81725570 AAATCATCAT
* *
81725580 AAACTTTCAGCACTTATTCATGG
1 AAACTTTCAGCAATTATCCATGG
81725603 AAACTTTCAG-AATTATCCATG
1 AAACTTTCAGCAATTATCCATG
81725624 AAATAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (23 bp):
AAACTTTCAGCAATTATCCATGG
Found at i:81729147 original size:40 final size:40
Alignment explanation
Indices: 81728935--81729140 Score: 360
Period size: 40 Copynumber: 5.2 Consensus size: 40
81728925 AACCCAAGTA
* *
81728935 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81728974 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81729014 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81729054 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81729094 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81729134 CCTTCGG
1 CCTTCGG
81729141 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 13 0.08
40 147 0.92
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81737182 original size:79 final size:80
Alignment explanation
Indices: 81737045--81737256 Score: 340
Period size: 79 Copynumber: 2.7 Consensus size: 80
81737035 AACCCAAGTA
* * *
81737045 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
81737109 TAACTCGCACAAATG
66 TAACTCGCACAAATG
81737124 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTT-GAGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
81737188 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * *
81737203 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCG-GATCTTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGA-CTTAG
81737257 TCAGGTTATC
Statistics
Matches: 124, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
79 90 0.73
80 34 0.27
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:81737256 original size:40 final size:40
Alignment explanation
Indices: 81737045--81737249 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
81737035 AACCCAAGTA
* *
81737045 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81737084 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81737124 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81737164 CCTT-GAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81737203 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81737243 CCTTCGG
1 CCTTCGG
81737250 ATCTTAGTCA
Statistics
Matches: 158, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
39 51 0.32
40 107 0.68
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81739066 original size:21 final size:22
Alignment explanation
Indices: 81739040--81739090 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
81739030 CTTATATCAT
**
81739040 GGGCGTGTCCC-AGGGTCACAC
1 GGGCGTGTCCCTAGGACCACAC
* *
81739061 GGGCGTGCCCCTTGGACCACAC
1 GGGCGTGTCCCTAGGACCACAC
81739083 GGGCGTGT
1 GGGCGTGT
81739091 GAGCCCTGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.12, C:0.33, G:0.39, T:0.16
Consensus pattern (22 bp):
GGGCGTGTCCCTAGGACCACAC
Found at i:81739692 original size:30 final size:30
Alignment explanation
Indices: 81739656--81739714 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
81739646 TGCAGATAAG
81739656 GATTTGGATAATGAGAAGGGTAAGGAAAAA
1 GATTTGGATAATGAGAAGGGTAAGGAAAAA
81739686 GATTTGGATAATGAGAAGGGTAAGGAAAA
1 GATTTGGATAATGAGAAGGGTAAGGAAAA
81739715 TGAATATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.34, T:0.20
Consensus pattern (30 bp):
GATTTGGATAATGAGAAGGGTAAGGAAAAA
Found at i:81740610 original size:20 final size:18
Alignment explanation
Indices: 81740557--81740611 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
81740547 TTTTTAAAAT
*
81740557 AATATATTTTTATTTATA
1 AATATATTTTTATTTTTA
*
81740575 AA-ATATTTATAATTTTTA
1 AATATATTT-TTATTTTTA
81740593 ATATATATTTTTAGTTTTT
1 A-ATATATTTTTA-TTTTT
81740612 TTATTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 6 0.20
18 10 0.33
19 3 0.10
20 11 0.37
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
AATATATTTTTATTTTTA
Found at i:81743428 original size:15 final size:15
Alignment explanation
Indices: 81743408--81743437 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81743398 CATTTTATTT
*
81743408 ATATTAGGATAATTA
1 ATATTAAGATAATTA
81743423 ATATTAAGATAATTA
1 ATATTAAGATAATTA
81743438 TTAGAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:81743481 original size:10 final size:10
Alignment explanation
Indices: 81743462--81743493 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
81743452 TTTTAGGATT
81743462 TTAT-TTTAA
1 TTATCTTTAA
81743471 TTATCTTTAA
1 TTATCTTTAA
81743481 TTATCTTTAA
1 TTATCTTTAA
81743491 TTA
1 TTA
81743494 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:81750179 original size:46 final size:46
Alignment explanation
Indices: 81750085--81750206 Score: 120
Period size: 46 Copynumber: 2.6 Consensus size: 46
81750075 TCTCGTAGTC
* * * * *
81750085 GATTCATGTCCCAGACATGTCTTATACTGGCTTACGTCCCGAGGCT
1 GATTCATGTCCCAGACATGTCTTACACTAGCCTACGTCCCAAGACT
* *
81750131 GATTCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATACT
1 GATTCATGTCCCAGACATGTCTTACACTAGC-CTACGTCCCAAGACT
* * *
81750177 GATGGCATGTGCTAGACATGGTCTTACACT
1 GAT-TCATGTCCCAGACAT-GTCTTACACT
81750207 GGCTCTCATA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 40 0.63
47 13 0.21
48 10 0.16
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GATTCATGTCCCAGACATGTCTTACACTAGCCTACGTCCCAAGACT
Found at i:81752697 original size:63 final size:64
Alignment explanation
Indices: 81752627--81752746 Score: 163
Period size: 63 Copynumber: 1.9 Consensus size: 64
81752617 TTGTGAAACT
* * * *
81752627 AAAATTTATGAATCAATTCAGCATAATTAACTTAAAA-A-ATCAAATGCAATATATTTGGAAAGA
1 AAAATTTATAAATAAATGCAACATAATTAA-TTAAAATATATCAAATGCAATATATTTGGAAAGA
* *
81752690 AAAATTTATAAATAAATGCAACATAATTGATTAAAATATATTAAATGCAATATATTT
1 AAAATTTATAAATAAATGCAACATAATTAATTAAAATATATCAAATGCAATATATTT
81752747 TAATAATAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
62 6 0.12
63 26 0.53
64 17 0.35
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (64 bp):
AAAATTTATAAATAAATGCAACATAATTAATTAAAATATATCAAATGCAATATATTTGGAAAGA
Found at i:81756645 original size:18 final size:18
Alignment explanation
Indices: 81756622--81756659 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
81756612 CTCATATTCT
*
81756622 TCCATAAAATTTTAGAAA
1 TCCATAAAATTTCAGAAA
81756640 TCCATAAAATTTCAGAAA
1 TCCATAAAATTTCAGAAA
81756658 TC
1 TC
81756660 AACATGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (18 bp):
TCCATAAAATTTCAGAAA
Found at i:81762285 original size:29 final size:29
Alignment explanation
Indices: 81762252--81762354 Score: 152
Period size: 29 Copynumber: 3.6 Consensus size: 29
81762242 GTGACGAGAT
81762252 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
81762281 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
81762310 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
81762339 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
81762355 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:81766591 original size:25 final size:25
Alignment explanation
Indices: 81766563--81766610 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81766553 TTATACCATG
* * *
81766563 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81766588 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81766611 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81766681 original size:20 final size:20
Alignment explanation
Indices: 81766656--81766712 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
81766646 AATATGGTAA
81766656 GTATGATATGCACATGAAAT
1 GTATGATATGCACATGAAAT
*
81766676 GTATGATATGCACATGATAT
1 GTATGATATGCACATGAAAT
81766696 GTATGATATGCACATGA
1 GTATGATATGCACATGA
81766713 GGTAATCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
GTATGATATGCACATGAAAT
Found at i:81766694 original size:11 final size:11
Alignment explanation
Indices: 81766658--81766712 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
81766648 TATGGTAAGT
81766658 ATGATATGCAC
1 ATGATATGCAC
* *
81766669 ATGAAATG--T
1 ATGATATGCAC
81766678 ATGATATGCAC
1 ATGATATGCAC
*
81766689 ATGATATG--T
1 ATGATATGCAC
81766698 ATGATATGCAC
1 ATGATATGCAC
81766709 ATGA
1 ATGA
81766713 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Done.