Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 284 of 427
Found at i:81766831 original size:47 final size:49
Alignment explanation
Indices: 81766764--81766857 Score: 140
Period size: 47 Copynumber: 2.0 Consensus size: 49
81766754 AGGAAGTGAA
*
81766764 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
*
81766811 AAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
81766858 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 20 0.48
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:81766853 original size:25 final size:24
Alignment explanation
Indices: 81766763--81766857 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
81766753 GAGGAAGTGA
81766763 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
81766786 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81766810 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81766834 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81766858 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 22 0.34
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:81767084 original size:31 final size:31
Alignment explanation
Indices: 81767049--81767112 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
81767039 CGTTTACAGT
81767049 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81767080 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81767111 AA
1 AA
81767113 TAAGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81770899 original size:40 final size:40
Alignment explanation
Indices: 81770816--81771071 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
81770806 CAACCAAGTA
** ** *
81770816 CCTTCGGGGTTTAG-CCGGATATAGCCACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81770854 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81770894 CCTTCGGGACTTAGCCTGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
* *
81770934 CCTTCGGGACTTAGCCCGGATATAGTTACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81770974 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
81771014 CCTTCGGGACTT-GCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
81771053 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81771072 TTATCATCCA
Statistics
Matches: 193, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
38 13 0.07
39 47 0.24
40 131 0.68
41 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81782170 original size:21 final size:21
Alignment explanation
Indices: 81782146--81782187 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
81782136 TTCAAATAGG
*
81782146 TACCTGTACCACTCAAAACAT
1 TACCTGTACCACACAAAACAT
*
81782167 TACCTGTACTACACAAAACAT
1 TACCTGTACCACACAAAACAT
81782188 GGTTATACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.31, G:0.05, T:0.24
Consensus pattern (21 bp):
TACCTGTACCACACAAAACAT
Found at i:81782471 original size:46 final size:48
Alignment explanation
Indices: 81782343--81782603 Score: 307
Period size: 46 Copynumber: 5.6 Consensus size: 48
81782333 AGGTCGACGC
*
81782343 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCT-ACATCT-CGTAGCCGATG
*
81782392 CCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGTAGCCGATG
*
81782438 CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGTA-GCCGATG
*
81782484 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGTA-GCCGATG
* *
81782530 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GT-GGCGATG
1 -CATGTCCCAGACATGGTCTTACACTAGCTCTACAT-CTCGTAGCCGATG
81782577 CATGTCCCAGACAT-GTCTTACACTAGC
1 CATGTCCCAGACATGGTCTTACACTAGC
81782604 ACACAAATAA
Statistics
Matches: 192, Mismatches: 8, Indels: 27
0.85 0.04 0.12
Matches are distributed among these distances:
44 10 0.05
45 32 0.17
46 82 0.43
47 21 0.11
48 20 0.10
49 2 0.01
50 25 0.13
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCGTAGCCGATG
Found at i:81782541 original size:138 final size:141
Alignment explanation
Indices: 81782343--81782600 Score: 391
Period size: 138 Copynumber: 1.8 Consensus size: 141
81782333 AGGTCGACGC
**
81782343 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCCAGACATG
*
81782408 GTCTTACACT-G-ACACAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
65 GTCTTACACTAGCACACATAAT-GT-GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
81782470 TCTCGAGGCCGATG
128 TCTCGAGGCCGATG
*
81782484 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGACATGG
* * *
81782547 TCTTACACTAGCTCTCATAATGTGGCGATGCATGTCCCAGACATGTCTTACACT
66 TCTTACACTAGCACACATAATGTGCCGATGCATGTCCCAGACATGTCTTACACT
81782601 AGCACACAAA
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
138 39 0.36
139 31 0.29
140 22 0.21
141 15 0.14
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (141 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAGACATGG
TCTTACACTAGCACACATAATGTGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
CGAGGCCGATG
Found at i:81782576 original size:93 final size:94
Alignment explanation
Indices: 81782341--81782608 Score: 345
Period size: 93 Copynumber: 2.9 Consensus size: 94
81782331 TGAGGTCGAC
* *
81782341 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-AT-CGTGGCGATG-CATGTCCCAGACA
*
81782406 TGGTCTTACACT-G-ACACATCTCGTAGCCGAT
63 T-GTCTTACACTAGCACACATCTCATAGCCGAT
* * *
81782437 G-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAATCGTGG-CGATGCATGTCCCAGACAT
* *
81782498 GTCTTACACTAGCTCTCATCTCA-ATGCCGAT
64 GTCTTACACTAGCACACATCTCATA-GCCGAT
81782529 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCGATGCATGTCCCAGACATGT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCGTGGCGATGCATGTCCCAGACATGT
81782593 CTTACACTAGCACACA
66 CTTACACTAGCACACA
81782609 AATAACCCGA
Statistics
Matches: 150, Mismatches: 13, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
90 10 0.07
91 19 0.13
92 20 0.13
93 50 0.33
94 34 0.23
95 16 0.11
96 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.26
Consensus pattern (94 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATCGTGGCGATGCATGTCCCAGACATGT
CTTACACTAGCACACATCTCATAGCCGAT
Found at i:81783095 original size:30 final size:30
Alignment explanation
Indices: 81783050--81783111 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
81783040 TATTTTATTA
* *
81783050 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAAATTTATTATTATTTTAAAGGCATTTG
* *
81783080 TTAAATTTATTATTATTTTAGAGGTATTTG
1 TTAAATTTATTATTATTTTAAAGGCATTTG
81783110 TT
1 TT
81783112 TGTTAAGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAAATTTATTATTATTTTAAAGGCATTTG
Found at i:81786845 original size:14 final size:14
Alignment explanation
Indices: 81786819--81786848 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
81786809 GTATTCGACC
81786819 AAGGAAAGAAAAAT
1 AAGGAAAGAAAAAT
81786833 AAGGAGAAGAAAAAT
1 AAGGA-AAGAAAAAT
81786848 A
1 A
81786849 TTTCTTCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (14 bp):
AAGGAAAGAAAAAT
Found at i:81792878 original size:28 final size:29
Alignment explanation
Indices: 81792838--81792936 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
81792828 GTAATAAGCC
*
81792838 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
81792866 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
81792894 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
81792923 CGCACACTTAGTGC
1 CGCACACTTAGTGC
81792937 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:81795539 original size:90 final size:90
Alignment explanation
Indices: 81795376--81795550 Score: 217
Period size: 90 Copynumber: 1.9 Consensus size: 90
81795366 CCATATAGAA
* * * * *
81795376 TGCCAAAGCCATGTCCCCGACATGGTCTTACATGGGTCTACATACCGATGCCATATCCCAAATAT
1 TGCCAAAGCCATGTCCCAGACATGATCTTACACGGGCCTACATACCGATGCCATATCCCAAACAT
*
81795441 GGTATTATACGAAGTCTCATGTTGG
66 GGTATTATACGAAATCTCATGTTGG
* * ** *
81795466 TGCCAATGCCATGTCCCAGACGTGATCTTACACGGGACCT-CATATTGATGCCATGTCCCAAACA
1 TGCCAAAGCCATGTCCCAGACATGATCTTACACGGG-CCTACATACCGATGCCATATCCCAAACA
* *
81795530 TGTTCTTATACGAAATCTCAT
65 TGGTATTATACGAAATCTCAT
81795551 ATCAACGCTA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 69 0.97
91 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (90 bp):
TGCCAAAGCCATGTCCCAGACATGATCTTACACGGGCCTACATACCGATGCCATATCCCAAACAT
GGTATTATACGAAATCTCATGTTGG
Found at i:81795550 original size:42 final size:42
Alignment explanation
Indices: 81795471--81795552 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
81795461 GTTGGTGCCA
* * **
81795471 ATGCCATGTCCCAGACGTGATCTTACACGGGACCTCATATTG
1 ATGCCATGTCCCAAACATGATCTTACACGAAACCTCATATTG
* * *
81795513 ATGCCATGTCCCAAACATGTTCTTATACGAAATCTCATAT
1 ATGCCATGTCCCAAACATGATCTTACACGAAACCTCATAT
81795553 CAACGCTATA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATGTCCCAAACATGATCTTACACGAAACCTCATATTG
Found at i:81796954 original size:13 final size:13
Alignment explanation
Indices: 81796938--81796970 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
81796928 TTTAATTAAA
*
81796938 TTAGTTAATTAGT
1 TTAGATAATTAGT
81796951 TTAGATAATTAGT
1 TTAGATAATTAGT
81796964 TTA-ATAA
1 TTAGATAA
81796971 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:81800170 original size:19 final size:21
Alignment explanation
Indices: 81800146--81800185 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
81800136 TCAGGTTGTA
81800146 TAAAT-ATTTAAAA-CTCTTT
1 TAAATAATTTAAAATCTCTTT
81800165 TAAATAATTTAAAATCTCTTT
1 TAAATAATTTAAAATCTCTTT
81800186 CCTTTTCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 8 0.42
21 6 0.32
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (21 bp):
TAAATAATTTAAAATCTCTTT
Found at i:81800313 original size:49 final size:48
Alignment explanation
Indices: 81800227--81800355 Score: 165
Period size: 49 Copynumber: 2.7 Consensus size: 48
81800217 TTGAATTTTA
* * *
81800227 AAAAGTCTTTTATATAATAATTTAAA-TTCTATTAATTATCT-TTTATTT
1 AAAACTCTTTTAAATAATAA-TTAAATTTCTATTAATTAT-TATTTATCT
* *
81800275 AAAACTCTTTTAAATAATAATTAAATTATGTTTTAATTATTATTTATCT
1 AAAACTCTTTTAAATAATAATTAAATT-TCTATTAATTATTATTTATCT
81800324 AAAACTCTTTTAAATAATAATTAAA-TTCTATT
1 AAAACTCTTTTAAATAATAATTAAATTTCTATT
81800356 TCCTTATCTG
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
47 9 0.13
48 21 0.30
49 41 0.58
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (48 bp):
AAAACTCTTTTAAATAATAATTAAATTTCTATTAATTATTATTTATCT
Found at i:81803524 original size:46 final size:46
Alignment explanation
Indices: 81803401--81803526 Score: 218
Period size: 46 Copynumber: 2.7 Consensus size: 46
81803391 TGGTTGAGCA
* *
81803401 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
81803447 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
81803493 TCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
81803527 GGGGCGGGTT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
45 2 0.03
46 75 0.97
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:81803787 original size:19 final size:20
Alignment explanation
Indices: 81803750--81803787 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81803740 ATAAGGTGGT
81803750 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
81803770 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
81803788 TGGTGGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:81805669 original size:24 final size:24
Alignment explanation
Indices: 81805623--81805670 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
81805613 TCAAATAAAA
*
81805623 TTTTAAAATAAAATAATACAAATT
1 TTTTAAAATAAAATAATAAAAATT
*
81805647 TTTTAAAAT-AATTAATTAAAAATT
1 TTTTAAAATAAAATAA-TAAAAATT
81805671 ATTATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (24 bp):
TTTTAAAATAAAATAATAAAAATT
Found at i:81810031 original size:21 final size:21
Alignment explanation
Indices: 81809971--81810023 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
81809961 CACTTAAAAC
* *
81809971 AGGGC-ACATGCCCGTATGGA
1 AGGGCAACATGCCAGTGTGGA
81809991 AGGGCAACATGCCAGTGTGGA
1 AGGGCAACATGCCAGTGTGGA
81810012 AGGGCAACATGC
1 AGGGCAACATGC
81810024 TTGTGTGGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 5 0.17
21 25 0.83
ACGTcount: A:0.28, C:0.23, G:0.36, T:0.13
Consensus pattern (21 bp):
AGGGCAACATGCCAGTGTGGA
Found at i:81811333 original size:49 final size:49
Alignment explanation
Indices: 81811280--81811482 Score: 172
Period size: 49 Copynumber: 4.3 Consensus size: 49
81811270 CGTCTCCCTA
81811280 ACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCCAG
1 ACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCCAG
** * * *
81811329 ACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATGCCATGTCCCAG
1 ACAGGTCTTACACTAACTTTCATATATCGAG-GCCGATGCCATGTCCCAG
* * * * * * **
81811378 ACAGGTCTTACACTGAC--ACACA-A--GAAGCTGACGCCATGTCTTAG
1 ACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCCAG
* *
81811422 ACAGGTCTTACACTAACTTGT-ATAT-CCTGAGGCTGATG-CATGTCCCAG
1 ACAGGTCTTACACTAACTT-TCATATATC-GAGGCCGATGCCATGTCCCAG
*
81811470 ACATGTCTTACAC
1 ACAGGTCTTACAC
81811483 CAGCTCTCAT
Statistics
Matches: 122, Mismatches: 23, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
44 30 0.25
46 3 0.02
47 2 0.02
48 21 0.17
49 66 0.54
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
ACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCATGTCCCAG
Found at i:81812912 original size:21 final size:21
Alignment explanation
Indices: 81812886--81812993 Score: 107
Period size: 21 Copynumber: 5.3 Consensus size: 21
81812876 GTATTTTATT
*
81812886 TTCTGTTCAGCTTTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
* *
81812907 TTCTGTTCAACTCTTATGAGT
1 TTCTGTTCAGCTCTTATGAGC
* * *
81812928 TTTTGTTAAGCT-TT-GGAGC
1 TTCTGTTCAGCTCTTATGAGC
* *
81812947 TTCTGTTCAAC-CTTA-AAGC
1 TTCTGTTCAGCTCTTATGAGC
*
81812966 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTATGAGC
81812987 TTCTGTT
1 TTCTGTT
81812994 GGTGTATTTA
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
19 26 0.38
20 6 0.09
21 37 0.54
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTATGAGC
Found at i:81812966 original size:19 final size:21
Alignment explanation
Indices: 81812944--81812993 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
81812934 TAAGCTTTGG
81812944 AGCTTCTGTTCAAC-CTTA-A
1 AGCTTCTGTTCAACTCTTACA
* *
81812963 AGCTTCTGTTCAGCTCTTACG
1 AGCTTCTGTTCAACTCTTACA
81812984 AGCTTCTGTT
1 AGCTTCTGTT
81812994 GGTGTATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 13 0.48
20 4 0.15
21 10 0.37
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.40
Consensus pattern (21 bp):
AGCTTCTGTTCAACTCTTACA
Found at i:81812987 original size:40 final size:41
Alignment explanation
Indices: 81812886--81812993 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 41
81812876 GTATTTTATT
* * *
81812886 TTCTGTTCAGCTTTTATGAGCTTCTGTTCAACTCTTATGAGT
1 TTCTGTTCAGC-TTTACGAGCTTCTGTTCAACTCTTATAAGC
* * *
81812928 TTTTGTTAAGCTTT-GGAGCTTCTGTTCAAC-CTTA-AAGC
1 TTCTGTTCAGCTTTACGAGCTTCTGTTCAACTCTTATAAGC
81812966 TTCTGTTCAGCTCTTACGAGCTTCTGTT
1 TTCTGTTCAGCT-TTACGAGCTTCTGTT
81812994 GGTGTATTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
38 12 0.21
39 6 0.11
40 26 0.46
41 3 0.05
42 9 0.16
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (41 bp):
TTCTGTTCAGCTTTACGAGCTTCTGTTCAACTCTTATAAGC
Found at i:81820350 original size:17 final size:17
Alignment explanation
Indices: 81820328--81820366 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
81820318 TTATTTATTC
81820328 TATTGTTGGAATT-TAA
1 TATTGTTGGAATTATAA
81820344 TTATTGTTGGAATTATAA
1 -TATTGTTGGAATTATAA
81820362 TATTG
1 TATTG
81820367 AATTGGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (17 bp):
TATTGTTGGAATTATAA
Found at i:81820531 original size:21 final size:21
Alignment explanation
Indices: 81820507--81820549 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
81820497 TTTTACTTCT
*
81820507 TGTTCAAATCTTATGAGTTTC
1 TGTTCAAATCTTACGAGTTTC
* **
81820528 TGTTTAGCTCTTACGAGTTTC
1 TGTTCAAATCTTACGAGTTTC
81820549 T
1 T
81820550 ATACTTAGTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (21 bp):
TGTTCAAATCTTACGAGTTTC
Found at i:81825582 original size:49 final size:49
Alignment explanation
Indices: 81825492--81825587 Score: 120
Period size: 49 Copynumber: 2.0 Consensus size: 49
81825482 TATGGAGGAA
* * *
81825492 GTATCTGGCAGTAAATCTGCATTATCTGGTGCCTTGTCCACAATATTTT
1 GTATCTGGCAGTAAATCTGCAATATCTAGTGCCTTGACCACAATATTTT
* * ** *
81825541 GTATTTGGTAGTAAATCTGCAATATCTAGTGGTTTGACCACATTATT
1 GTATCTGGCAGTAAATCTGCAATATCTAGTGCCTTGACCACAATATT
81825588 CTATTTCTGG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (49 bp):
GTATCTGGCAGTAAATCTGCAATATCTAGTGCCTTGACCACAATATTTT
Found at i:81827517 original size:20 final size:20
Alignment explanation
Indices: 81827471--81827517 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
81827461 CGGCAATGTT
*
81827471 TAAGTTGTGAAAGACTATTG
1 TAAGTTGTGAAAGACTATGG
* *
81827491 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
81827511 TAAGTTG
1 TAAGTTG
81827518 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.28, T:0.38
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:81833467 original size:46 final size:46
Alignment explanation
Indices: 81833366--81833488 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 46
81833356 TGATATGTGT
*
81833366 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCACGAGA
* * *
81833412 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CA-TTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT--CACGAGA
* * * *
81833458 GCTACTGTAATACATGTCTGGCACATACATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
81833489 AGCCTCGAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.02
45 2 0.03
46 63 0.95
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCACGAGA
Found at i:81833621 original size:49 final size:48
Alignment explanation
Indices: 81833552--81833727 Score: 203
Period size: 49 Copynumber: 3.6 Consensus size: 48
81833542 TGTTATGTGT
*
81833552 CAATGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGC
1 CAATGTAAGACCTGTCTGGGACATGGCATCGAC-TCGATAGATGAAAGC
* * * * *
81833601 CAATGTAAGACCTGTCTGGGACATGGCATTGGCCTCGTTATATGAAAGT
1 CAATGTAAGACCTGTCTGGGACATGGCA-TCGACTCGATAGATGAAAGC
* * **
81833650 CAATGTAAGACCTATCTGGGACATGGCATCGACTTGAT-G-TGTTAGC
1 CAATGTAAGACCTGTCTGGGACATGGCATCGACTCGATAGATGAAAGC
* *
81833696 CAGTGTAAGACCATGTCTGGGATATGGCATCG
1 CAATGTAAGACC-TGTCTGGGACATGGCATCG
81833728 GCGTCTTATC
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
46 15 0.14
47 17 0.16
48 6 0.06
49 66 0.62
50 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
CAATGTAAGACCTGTCTGGGACATGGCATCGACTCGATAGATGAAAGC
Found at i:81833622 original size:93 final size:94
Alignment explanation
Indices: 81833517--81833726 Score: 248
Period size: 98 Copynumber: 2.2 Consensus size: 94
81833507 CTAGTGCAAA
* * *
81833517 ACCTGTCTGGGACATGGCATCAG-ATTG-T-TATG-TGTCAATGTAAGACCTGTCTGGGACATGG
1 ACCTGTCTGGGACATGGCATCAGCATCGTTATATGAAGTCAATGTAAGACCTATCTGGGACATGG
81833578 CATCGACATCGATAGATGAGAGCCAATGTAAG
66 CATCGAC-TCGAT-G-TGAGAGCCAATGTAAG
** *
81833610 ACCTGTCTGGGACATGGCATTGGCCTCGTTATATGAAAGTCAATGTAAGACCTATCTGGGACATG
1 ACCTGTCTGGGACATGGCATCAGCATCGTTATATG-AAGTCAATGTAAGACCTATCTGGGACATG
* ** *
81833675 GCATCGACTTGATGTGTTAGCCAGTGTAAG
65 GCATCGACTCGATGTGAGAGCCAATGTAAG
*
81833705 ACCATGTCTGGGATATGGCATC
1 ACC-TGTCTGGGACATGGCATC
81833727 GGCGTCTTAT
Statistics
Matches: 99, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
93 21 0.21
94 2 0.02
95 17 0.17
96 21 0.21
97 4 0.04
98 34 0.34
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (94 bp):
ACCTGTCTGGGACATGGCATCAGCATCGTTATATGAAGTCAATGTAAGACCTATCTGGGACATGG
CATCGACTCGATGTGAGAGCCAATGTAAG
Found at i:81833668 original size:98 final size:96
Alignment explanation
Indices: 81833550--81833725 Score: 264
Period size: 98 Copynumber: 1.8 Consensus size: 96
81833540 ATTGTTATGT
*
81833550 GTCAATGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGCCAATGTAAGACC-T
1 GTCAATGTAAGACCTATCTGGGACATGGCATCGAC-TCGAT-G-TGAGAGCCAATGTAAGACCAT
81833614 GTCTGGGACATGGCATTGGCCTCGTTATATGAAA
63 GTCTGGGACATGGCATTGGCCTCGTTATATGAAA
* ** *
81833648 GTCAATGTAAGACCTATCTGGGACATGGCATCGACTTGATGTGTTAGCCAGTGTAAGACCATGTC
1 GTCAATGTAAGACCTATCTGGGACATGGCATCGACTCGATGTGAGAGCCAATGTAAGACCATGTC
*
81833713 TGGGATATGGCAT
66 TGGGACATGGCAT
81833726 CGGCGTCTTA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
95 16 0.23
96 17 0.24
97 4 0.06
98 34 0.48
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (96 bp):
GTCAATGTAAGACCTATCTGGGACATGGCATCGACTCGATGTGAGAGCCAATGTAAGACCATGTC
TGGGACATGGCATTGGCCTCGTTATATGAAA
Found at i:81841340 original size:50 final size:49
Alignment explanation
Indices: 81841164--81841402 Score: 277
Period size: 50 Copynumber: 4.9 Consensus size: 49
81841154 AGCCGAAGCT
* * * *
81841164 ATCTGATACGCATAATAGCCTGCACTTAGTACTACACATGTGACCAACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
*
81841213 ATC-CAGTACACGTAGTAGCCTGCACTTAGTACTACACAC-TGACCAACA
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
* * * * *
81841261 ATC-CAGTACACATAGTAGCCTGCACTTAGTACTACGCACGTGACCTCACC
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACA
* * *
81841311 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAATA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGAC-CAACA
* * *
81841361 GTATGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
81841403 TATTCACAAT
Statistics
Matches: 164, Mismatches: 21, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
48 47 0.29
49 37 0.23
50 79 0.48
51 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACA
Found at i:81842696 original size:43 final size:43
Alignment explanation
Indices: 81842635--81842760 Score: 200
Period size: 44 Copynumber: 2.9 Consensus size: 43
81842625 CTCGTACAAC
* * *
81842635 GCCAACGTCCTAGACGTGGTCTTACATGTAATCACATATCGAT
1 GCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCGAT
*
81842678 GCCAACATCCCAGACGTGGTCTTACACGTAAATCACAAATCGAT
1 GCCAACATCCCAGACGTGGTCTTACACGT-AATCACATATCGAT
81842722 GCCAACATCCCAGACGTGGTCTTACACG-AATCACATATC
1 GCCAACATCCCAGACGTGGTCTTACACGTAATCACATATC
81842761 AGAATCCTAT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
42 10 0.13
43 26 0.34
44 41 0.53
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
GCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCGAT
Found at i:81846469 original size:43 final size:45
Alignment explanation
Indices: 81846363--81846657 Score: 332
Period size: 44 Copynumber: 6.8 Consensus size: 45
81846353 TTTTATCAAA
* *
81846363 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCGAAT-TCA-T
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATATCATT
* * *
81846404 CCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCC-AATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATT
*
81846446 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA-TCATT
*
81846491 TCACCGGCATTATAGCC-GCTAAGCTCAAAGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATT
* * *
81846534 TCACCGACATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA-TCATT
*
81846579 TCACCGGCATTATAACCT--TAGGCTCAAAGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATT
** *
81846621 TCATAGGCATTATAGCCTCCTAGGCTCAAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGA
81846658 TTAGTACCGT
Statistics
Matches: 217, Mismatches: 22, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
40 6 0.03
41 28 0.13
42 32 0.15
43 52 0.24
44 53 0.24
45 44 0.20
46 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATT
Found at i:81846537 original size:88 final size:88
Alignment explanation
Indices: 81846363--81846663 Score: 386
Period size: 87 Copynumber: 3.5 Consensus size: 88
81846353 TTTTATCAAA
* * *
81846363 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCGAAT--TCATC-CACCGGCATT-TCGCCT
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATAGT-ATCTCACCGGCATTATAGCC-
* *
81846421 GCTAGGCTCGAA-GCCCAATATCATT
63 GCTAGGCTCAAAGGCCCGATATCATT
81846446 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCGCT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCGCT
*
81846511 AAGCTCAAAGGCCCGATATCATT
66 AGGCTCAAAGGCCCGATATCATT
* * * *
81846534 TCACCGACATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCACCGGCATTATAACC-TT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCGCT
81846598 AGGCTCAAAGGCCCGATATCATT
66 AGGCTCAAAGGCCCGATATCATT
** * *
81846621 TCATAGGCATTATAGCCTCCTAGGCTCAAAGGCCCGATTAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
81846664 CCGTACGATA
Statistics
Matches: 193, Mismatches: 17, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
83 15 0.08
84 12 0.06
85 7 0.04
86 3 0.02
87 81 0.42
88 75 0.39
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (88 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCGCT
AGGCTCAAAGGCCCGATATCATT
Found at i:81853356 original size:50 final size:50
Alignment explanation
Indices: 81853193--81853482 Score: 281
Period size: 50 Copynumber: 5.9 Consensus size: 50
81853183 AGCTGAAGCT
* * *
81853193 ATCTGA-TACGCATAATAGCCTGCACTTAGTACTACACATGTGACC-AAC
1 ATCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAC
* *
81853241 AATC-CAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAC
1 -ATCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAC
* * * * *
81853290 ATC-CAGTACACATAGTATCCTGCACTTAGTACTACACACATGACCTTACC
1 ATCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAAC
* * *
81853340 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTC
1 ATCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-AC
** * * **
81853391 AT-TGAGTAGGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAAC
1 ATCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAC
* * *
81853440 AGTATG-GTACACGTAGTAGCCTGCACTTTGTACTACACACGTG
1 A-TCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTG
81853483 TATTCATAAT
Statistics
Matches: 202, Mismatches: 30, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
48 43 0.21
49 43 0.21
50 77 0.38
51 39 0.19
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAC
Found at i:81853456 original size:101 final size:97
Alignment explanation
Indices: 81853199--81853482 Score: 354
Period size: 101 Copynumber: 2.9 Consensus size: 97
81853189 AGCTATCTGA
* * **
81853199 TACGCATAATAGCCTGCACTTAGTACTACACATGTGAC-CAACAATCCAGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTTAAC-ATCTGGTACACGTAGTAGCCT
81853263 GCACTTAGTACTACACACGTGACCAACATCCAG
65 GCACTTAGTACTACACACGTGACCAACATCCAG
* * ** * *
81853296 TACACATAGTATCCTGCACTTAGTACTACACACATGACCTTACCATCTGATACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-CTTAACATCTGGTACACGTAGTAGCCT
* **
81853361 GCACTTAGTACTACACACGTGATCGAAGTCATTGAG
65 GCACTTAGTACTACACACGTGA-CCAA--CATCCAG
* * *
81853397 TAGGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACA-TCTGGTACACGTAGTAGCCT
*
81853462 GCACTTTGTACTACACACGTG
65 GCACTTAGTACTACACACGTG
81853483 TATTCATAAT
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
97 32 0.20
98 41 0.26
99 5 0.03
100 6 0.04
101 74 0.47
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (97 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACATCTGGTACACGTAGTAGCCTG
CACTTAGTACTACACACGTGACCAACATCCAG
Found at i:81855106 original size:46 final size:46
Alignment explanation
Indices: 81855056--81855231 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81855046 TGGTTGAGCA
81855056 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81855102 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81855147 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81855195 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81855232 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81855212 original size:93 final size:93
Alignment explanation
Indices: 81855053--81855224 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81855043 GGATGGTTGA
* *
81855053 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81855118 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81855146 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81855211 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81855225 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81862545 original size:46 final size:46
Alignment explanation
Indices: 81862495--81862670 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81862485 TGGTTGAGCA
81862495 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81862541 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81862586 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81862634 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81862671 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81862651 original size:93 final size:93
Alignment explanation
Indices: 81862492--81862663 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81862482 GGATGGTTGA
* *
81862492 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81862557 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81862585 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81862650 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81862664 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81865076 original size:86 final size:84
Alignment explanation
Indices: 81864932--81865091 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 84
81864922 AACGCCAACA
* * * * * *
81864932 TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCTAGACAGGGTCTTACACGA
1 TCCCAAACATGGTCTTACACGTAATCACAAATCGATGCCACTATCCCAGACAGGGTCTTACACGA
*
81864997 ACTCATATATGATGTTGATG
66 A-TCACATATGATGTTGATG
*
81865017 TCCCAAACATGGTCTTACACGTAATTCACAAATCGATGCCAAC-ATCCCAGACGGGGTCTTACAC
1 TCCCAAACATGGTCTTACACGTAA-TCACAAATCGATGCC-ACTATCCCAGACAGGGTCTTACAC
81865081 GAATCACATAT
64 GAATCACATAT
81865092 CAGAATCCTA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
85 28 0.43
86 35 0.54
87 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (84 bp):
TCCCAAACATGGTCTTACACGTAATCACAAATCGATGCCACTATCCCAGACAGGGTCTTACACGA
ATCACATATGATGTTGATG
Found at i:81876900 original size:43 final size:42
Alignment explanation
Indices: 81876811--81876919 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
81876801 TAAGATTACG
* *
81876811 TGTAAGACCATA-TCTGGGATATGGCATCGATATGAGACTTCG
1 TGTAAGACCATAGT-TGGGATATGGCATCGATATGAGACTCCA
* * *
81876853 TGTAAGACCATAGTTGGGCTATTGGCGTCGATATGAG-GTCCCA
1 TGTAAGACCATAGTTGGGATA-TGGCATCGATATGAGACT-CCA
*
81876896 TGTAAGACCATAGCTGGGATATGG
1 TGTAAGACCATAGTTGGGATATGG
81876920 AATTGGTATG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
42 22 0.39
43 35 0.61
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGTTGGGATATGGCATCGATATGAGACTCCA
Found at i:81877031 original size:20 final size:20
Alignment explanation
Indices: 81877005--81877051 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
81876995 CAGCAATGTT
*
81877005 TAAGTTGTGACAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
81877025 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
81877045 TAAGTTG
1 TAAGTTG
81877052 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:81885094 original size:39 final size:39
Alignment explanation
Indices: 81885030--81885107 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
81885020 CCTCTAACAC
* *
81885030 ATTTTTGGGAACCTTCCACTGAAGTATGGCTCCAATCTT
1 ATTTCTGGGAACCTTCCACTAAAGTATGGCTCCAATCTT
* *
81885069 ATTTCTGGGAACTTTCCACTAAAGTATGGCTTCAATCTT
1 ATTTCTGGGAACCTTCCACTAAAGTATGGCTCCAATCTT
81885108 CTTCGGATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (39 bp):
ATTTCTGGGAACCTTCCACTAAAGTATGGCTCCAATCTT
Found at i:81885561 original size:6 final size:6
Alignment explanation
Indices: 81885550--81885576 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
81885540 CTATTGATTA
81885550 TGTGAC TGTGAC TGTGAC TGTGAC TGT
1 TGTGAC TGTGAC TGTGAC TGTGAC TGT
81885577 TATATGATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (6 bp):
TGTGAC
Found at i:81887089 original size:2 final size:2
Alignment explanation
Indices: 81887082--81887108 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
81887072 TGTATAATTT
81887082 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
81887109 TTATCATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81887834 original size:24 final size:24
Alignment explanation
Indices: 81887807--81887856 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
81887797 CATGCATCGA
*
81887807 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
81887831 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
81887855 CA
1 CA
81887857 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:81887967 original size:93 final size:94
Alignment explanation
Indices: 81887812--81888186 Score: 671
Period size: 94 Copynumber: 4.0 Consensus size: 94
81887802 ATCGACATTC
* *
81887812 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
81887877 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
81887906 AAATCTGCACACAAAGTGACATTTAATTCCTCACACA-AGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
81887970 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
81887999 AAATCTGCACACAAAGTGACATTTAATTCCTCACACAAAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
81888064 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
81888093 AAATCTGTACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
81888158 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
81888187 CGGTCACATT
Statistics
Matches: 272, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
93 93 0.34
94 179 0.66
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:81896385 original size:15 final size:15
Alignment explanation
Indices: 81896348--81896418 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
81896338 ATATCTTGGG
*
81896348 TTTCTTTATCCTAGA
1 TTTCTTTATTCTAGA
* *
81896363 TCTATTTATTCTAGA
1 TTTCTTTATTCTAGA
* *
81896378 TTTCTTTATTCTGGG
1 TTTCTTTATTCTAGA
* *
81896393 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TAGA
81896408 TTTCTTTATTC
1 TTTCTTTATTC
81896419 GGTTTTCTTG
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
14 2 0.05
15 40 0.91
16 2 0.05
ACGTcount: A:0.15, C:0.17, G:0.10, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTAGA
Found at i:81896427 original size:14 final size:14
Alignment explanation
Indices: 81896376--81896427 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
81896366 ATTTATTCTA
81896376 GATTTCTTTATTCTG
1 GATTTCTTTATTC-G
* * *
81896391 GGTTTCTCTATCTTG
1 GATTTCTTTAT-TCG
81896406 GATTTCTTTATTCG
1 GATTTCTTTATTCG
*
81896420 GTTTTCTT
1 GATTTCTT
81896428 GTTATCTTTG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
14 9 0.31
15 19 0.66
16 1 0.03
ACGTcount: A:0.10, C:0.15, G:0.15, T:0.60
Consensus pattern (14 bp):
GATTTCTTTATTCG
Found at i:81902958 original size:2 final size:2
Alignment explanation
Indices: 81902946--81902984 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
81902936 TGTATAATTT
*
81902946 TA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81902985 TTATCATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:81903624 original size:24 final size:25
Alignment explanation
Indices: 81903596--81903659 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
81903586 TCAACCAAAT
* * *
81903596 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
81903620 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
81903645 T-GCACACATAGTGCC
1 TCGCACACATAGTGCC
81903660 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 30 0.83
25 6 0.17
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.22
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:81903710 original size:24 final size:24
Alignment explanation
Indices: 81903622--81903732 Score: 77
Period size: 24 Copynumber: 4.6 Consensus size: 24
81903612 AATTAAGCTC
*
81903622 GCACACATAGTGCCATACTAAA-CT
1 GCACACATAGTGCCATTC-AAATCT
* *
81903646 GCACACATAGTGCC--TGAAATTT
1 GCACACATAGTGCCATTCAAATCT
* * *
81903668 TCACTCAT-GCATCGACATTCAAATCT
1 GCACACATAG--T-GCCATTCAAATCT
* * *
81903694 GCACACATAGTGCCATTTAATTCC
1 GCACACATAGTGCCATTCAAATCT
81903718 GCACACATAGTGCCA
1 GCACACATAGTGCCA
81903733 ATGTTAACTC
Statistics
Matches: 66, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
21 4 0.06
22 7 0.11
23 1 0.02
24 40 0.61
25 1 0.02
26 12 0.18
27 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (24 bp):
GCACACATAGTGCCATTCAAATCT
Found at i:81903828 original size:93 final size:94
Alignment explanation
Indices: 81903688--81903967 Score: 501
Period size: 93 Copynumber: 3.0 Consensus size: 94
81903678 ATCGACATTC
* *
81903688 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
81903753 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
81903782 AAATCTGCACACAAAGTGACATTTAATT-CGCACACATAATGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
81903846 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
81903875 AAATCTGCACAC-AAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
81903939 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
81903968 CGGTCACATT
Statistics
Matches: 179, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
92 15 0.08
93 138 0.77
94 26 0.15
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:81910582 original size:2 final size:2
Alignment explanation
Indices: 81910577--81910605 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
81910567 ATAATTTTTT
81910577 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81910606 TTATCATTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81911245 original size:24 final size:25
Alignment explanation
Indices: 81911217--81911280 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
81911207 TCAACCAAAT
* * *
81911217 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
81911241 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
81911266 T-GCACACATAGTGCC
1 TCGCACACATAGTGCC
81911281 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 30 0.83
25 6 0.17
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.22
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:81911331 original size:24 final size:24
Alignment explanation
Indices: 81911243--81911353 Score: 77
Period size: 24 Copynumber: 4.6 Consensus size: 24
81911233 AATTAAGCTC
*
81911243 GCACACATAGTGCCATACTAAA-CT
1 GCACACATAGTGCCATTC-AAATCT
* *
81911267 GCACACATAGTGCC--TGAAATTT
1 GCACACATAGTGCCATTCAAATCT
* * *
81911289 TCACTCAT-GCATCGACATTCAAATCT
1 GCACACATAG--T-GCCATTCAAATCT
* * *
81911315 GCACACATAGTGCCATTTAATTCC
1 GCACACATAGTGCCATTCAAATCT
81911339 GCACACATAGTGCCA
1 GCACACATAGTGCCA
81911354 ATGTTAACTC
Statistics
Matches: 66, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
21 4 0.06
22 7 0.11
23 1 0.02
24 40 0.61
25 1 0.02
26 12 0.18
27 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (24 bp):
GCACACATAGTGCCATTCAAATCT
Found at i:81911517 original size:93 final size:94
Alignment explanation
Indices: 81911309--81911589 Score: 492
Period size: 93 Copynumber: 3.0 Consensus size: 94
81911299 ATCGACATTC
* *
81911309 AAATCTGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
81911374 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
81911403 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTGTAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
81911468 GG-AATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
* *
81911496 AAATCTGTACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
* *
81911561 GGCAACTTACGTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
81911590 CAGTCACATT
Statistics
Matches: 178, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
93 90 0.51
94 88 0.49
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:81914653 original size:16 final size:16
Alignment explanation
Indices: 81914628--81914671 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
81914618 TATTTAAGAA
81914628 ATAATAAATAATAAAT
1 ATAATAAATAATAAAT
*
81914644 ATAATTAATAATAAAGT
1 ATAATAAATAATAAA-T
*
81914661 AAAATAAATAA
1 ATAATAAATAA
81914672 CGAATGAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
ATAATAAATAATAAAT
Found at i:81916309 original size:21 final size:22
Alignment explanation
Indices: 81916262--81916309 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
81916252 TTCCGGTACT
81916262 ACATTGGCTACATAAAAGTTAA
1 ACATTGGCTACATAAAAGTTAA
81916284 ACATTGGCTACATAAAAGTT-A
1 ACATTGGCTACATAAAAGTTAA
81916305 ACATT
1 ACATT
81916310 TAAAATTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (22 bp):
ACATTGGCTACATAAAAGTTAA
Found at i:81916786 original size:16 final size:16
Alignment explanation
Indices: 81916765--81916800 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
81916755 AAACTCTAAT
81916765 TTTCCCTTTCTT-TTTC
1 TTTCCCTTT-TTCTTTC
81916781 TTTCCCTTTTTCTTTC
1 TTTCCCTTTTTCTTTC
81916797 TTTC
1 TTTC
81916801 TTTCCCTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 2 0.11
16 17 0.89
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTCCCTTTTTCTTTC
Found at i:81918187 original size:13 final size:14
Alignment explanation
Indices: 81918161--81918193 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
81918151 ATAAAATATA
81918161 AATTTATATTTAAT
1 AATTTATATTTAAT
81918175 AATTTAT-TTTAAT
1 AATTTATATTTAAT
81918188 ATATTT
1 A-ATTT
81918194 CATTAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:81932613 original size:25 final size:25
Alignment explanation
Indices: 81932585--81932632 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
81932575 TTATACCATG
* *
81932585 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81932610 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81932633 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81932701 original size:20 final size:20
Alignment explanation
Indices: 81932676--81932734 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
81932666 TAAATATGGT
81932676 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
81932696 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
81932716 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
81932735 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:81932716 original size:11 final size:11
Alignment explanation
Indices: 81932680--81932734 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
81932670 TATGGTATGT
81932680 ATGATATGCAC
1 ATGATATGCAC
* *
81932691 ATGAAATG--T
1 ATGATATGCAC
81932700 ATGATATGCAC
1 ATGATATGCAC
*
81932711 ATGATATG--T
1 ATGATATGCAC
81932720 ATGATATGCAC
1 ATGATATGCAC
81932731 ATGA
1 ATGA
81932735 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81932812 original size:24 final size:24
Alignment explanation
Indices: 81932785--81932903 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
81932775 GAGGAAGTGA
*
81932785 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
81932809 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
81932832 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81932856 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
81932880 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81932904 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:81932854 original size:47 final size:48
Alignment explanation
Indices: 81932785--81932903 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
81932775 GAGGAAGTGA
81932785 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
81932832 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
81932880 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
81932904 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:81933129 original size:30 final size:31
Alignment explanation
Indices: 81933095--81933157 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
81933085 CGTTTACAGT
81933095 AAAGGCTTCGG-CCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
81933125 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81933156 AA
1 AA
81933158 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 11 0.35
31 20 0.65
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81940132 original size:9 final size:9
Alignment explanation
Indices: 81940118--81940222 Score: 54
Period size: 10 Copynumber: 11.0 Consensus size: 9
81940108 GAGTTTTCAC
81940118 AAATTTTTT
1 AAATTTTTT
81940127 AAA-TTTTT
1 AAATTTTTT
81940135 AATATTTTTCT
1 AA-ATTTTT-T
*
81940146 ACA--TTTT
1 AAATTTTTT
***
81940153 AAAAAATTT
1 AAATTTTTT
81940162 ACAATTTTTT
1 A-AATTTTTT
* *
81940172 ATAGTTTTTA
1 A-AATTTTTT
81940182 ACAATTTATTT
1 A-AATTT-TTT
81940193 AAATTTTTT
1 AAATTTTTT
81940202 AAGATTTTTT
1 AA-ATTTTTT
81940212 ACAACTTTTTT
1 A-AA-TTTTTT
81940223 TAATAATTTA
Statistics
Matches: 74, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
7 3 0.04
8 10 0.14
9 13 0.18
10 36 0.49
11 12 0.16
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (9 bp):
AAATTTTTT
Found at i:81940172 original size:10 final size:10
Alignment explanation
Indices: 81940159--81940222 Score: 60
Period size: 10 Copynumber: 6.3 Consensus size: 10
81940149 TTTTAAAAAA
81940159 TTTACAATTT
1 TTTACAATTT
* *
81940169 TTTATAGTTT
1 TTTACAATTT
*
81940179 TTAACAATTT
1 TTTACAATTT
81940189 ATTTA-AATTT
1 -TTTACAATTT
81940199 TTTA-AGATTT
1 TTTACA-ATTT
81940209 TTTACAACTTT
1 TTTACAA-TTT
81940220 TTT
1 TTT
81940223 TAATAATTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
9 5 0.11
10 29 0.66
11 10 0.23
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (10 bp):
TTTACAATTT
Found at i:81940200 original size:21 final size:20
Alignment explanation
Indices: 81940162--81940212 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
81940152 TAAAAAATTT
*
81940162 ACAATTTTTTATAGTTTTTA
1 ACAATTTTTTAAAGTTTTTA
*
81940182 ACAATTTATTTAAATTTTTTA
1 ACAATTT-TTTAAAGTTTTTA
*
81940203 A-GATTTTTTA
1 ACAATTTTTTA
81940213 CAACTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.15
20 11 0.41
21 12 0.44
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (20 bp):
ACAATTTTTTAAAGTTTTTA
Found at i:81940200 original size:30 final size:31
Alignment explanation
Indices: 81940158--81940225 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 31
81940148 ATTTTAAAAA
81940158 ATTTACAATTTTTTATAG-TTTTTAACAA-TTT
1 ATTTA-AATTTTTTA-AGATTTTTAACAACTTT
*
81940189 ATTTAAATTTTTTAAGATTTTTTACAACTTT
1 ATTTAAATTTTTTAAGATTTTTAACAACTTT
*
81940220 TTTTAA
1 ATTTAA
81940226 TAATTTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 2 0.06
30 18 0.55
31 13 0.39
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (31 bp):
ATTTAAATTTTTTAAGATTTTTAACAACTTT
Found at i:81940211 original size:31 final size:30
Alignment explanation
Indices: 81940158--81940225 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
81940148 ATTTTAAAAA
81940158 ATTTACAATTTTTTATAGTTTTTAACAA-TTT
1 ATTTA-AATTTTTTATAGTTTTT-ACAACTTT
81940189 ATTTAAATTTTTTA-AGATTTTTTACAACTTT
1 ATTTAAATTTTTTATAG--TTTTTACAACTTT
*
81940220 TTTTAA
1 ATTTAA
81940226 TAATTTAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 2 0.06
30 13 0.39
31 18 0.55
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (30 bp):
ATTTAAATTTTTTATAGTTTTTACAACTTT
Found at i:81940289 original size:10 final size:10
Alignment explanation
Indices: 81940219--81940300 Score: 64
Period size: 10 Copynumber: 8.5 Consensus size: 10
81940209 TTTACAACTT
81940219 TTTTTAATAA
1 TTTTTAATAA
*
81940229 -TTTAAATAA
1 TTTTTAATAA
*
81940238 TTTTT-ATTA
1 TTTTTAATAA
81940247 TTTTT-AT-A
1 TTTTTAATAA
81940255 TTTTTAAATAA
1 TTTTT-AATAA
* **
81940266 ATTTTAATTT
1 TTTTTAATAA
**
81940276 TTTTTGTTAA
1 TTTTTAATAA
81940286 TTTTTAATAA
1 TTTTTAATAA
81940296 TTTTT
1 TTTTT
81940301 CCAATTTGTA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
8 6 0.11
9 18 0.33
10 26 0.47
11 5 0.09
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:81940297 original size:29 final size:28
Alignment explanation
Indices: 81940229--81940299 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
81940219 TTTTTAATAA
*
81940229 TTTAAATAATTTTTATTATTTTTATATT
1 TTTAAATAATTTTAATTATTTTTATATT
* *
81940257 TTTAAATAAATTTTAATTTTTTTTGTTAATT
1 TTTAAAT-AATTTTAATTATTTTT-AT-ATT
81940288 TTT-AATAATTTT
1 TTTAAATAATTTT
81940300 TCCAATTTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 7 0.19
29 20 0.54
30 4 0.11
31 6 0.16
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (28 bp):
TTTAAATAATTTTAATTATTTTTATATT
Found at i:81941102 original size:12 final size:12
Alignment explanation
Indices: 81941064--81941101 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
81941054 GAATAAAAAA
81941064 TTTCCCTTCTCT
1 TTTCCCTTCTCT
81941076 TTTCCCTTCTCT
1 TTTCCCTTCTCT
81941088 TTTCCCTT-TCT
1 TTTCCCTTCTCT
81941099 TTT
1 TTT
81941102 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.23
12 20 0.77
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTCCCTTCTCT
Found at i:81945079 original size:20 final size:21
Alignment explanation
Indices: 81945054--81945094 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
81945044 ATGAATTCTT
81945054 TAAATTA-TT-TTCATTTAAAA
1 TAAATTAGTTATT-ATTTAAAA
81945074 TAAATTAGTTATTATTTAAAA
1 TAAATTAGTTATTATTTAAAA
81945095 ATGAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 10 0.53
22 2 0.11
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TAAATTAGTTATTATTTAAAA
Found at i:81948457 original size:30 final size:30
Alignment explanation
Indices: 81948422--81948484 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
81948412 ACTTAATAAG
81948422 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
81948452 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
81948482 CAA
1 CAA
81948485 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:81954600 original size:26 final size:26
Alignment explanation
Indices: 81954571--81954623 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
81954561 GTTTCCTGTA
81954571 CTTTATTTTT-TTCTTTTACATTATTT
1 CTTTATTTTTCTTCTTTT-CATTATTT
*
81954597 CTTTATTTTTCTTCTTTTCCTTATTT
1 CTTTATTTTTCTTCTTTTCATTATTT
81954623 C
1 C
81954624 ATTTTCCCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (26 bp):
CTTTATTTTTCTTCTTTTCATTATTT
Found at i:81955555 original size:15 final size:16
Alignment explanation
Indices: 81955535--81955573 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
81955525 GACATTGAAA
81955535 CTGTTATCTG-ACAAT
1 CTGTTATCTGAACAAT
*
81955550 CTGTTA-CTGAATAAT
1 CTGTTATCTGAACAAT
81955565 CTGTTATCT
1 CTGTTATCT
81955574 TAAAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 16 0.76
16 2 0.10
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.44
Consensus pattern (16 bp):
CTGTTATCTGAACAAT
Found at i:81965686 original size:29 final size:29
Alignment explanation
Indices: 81965653--81965812 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
81965643 GTGACGAGAT
81965653 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81965682 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81965711 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
81965740 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
81965769 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
81965798 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81965813 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81972519 original size:29 final size:29
Alignment explanation
Indices: 81972486--81972645 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
81972476 GTGACGAGAT
81972486 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81972515 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81972544 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
81972573 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
81972602 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
81972631 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81972646 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81980679 original size:29 final size:29
Alignment explanation
Indices: 81980646--81980805 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
81980636 GTGACGAGAT
81980646 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81980675 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
81980704 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
81980733 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
81980762 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
81980791 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
81980806 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:81984798 original size:17 final size:17
Alignment explanation
Indices: 81984772--81984805 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81984762 ATAGAACTGG
81984772 TTTTTAATTTTTAAATA
1 TTTTTAATTTTTAAATA
* *
81984789 TTTTTTATTTTTTAATA
1 TTTTTAATTTTTAAATA
81984806 ATTTATTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTAATTTTTAAATA
Found at i:81987885 original size:17 final size:17
Alignment explanation
Indices: 81987863--81987895 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81987853 TGATAAGCAT
*
81987863 ATAATATATATACACAC
1 ATAATATATACACACAC
81987880 ATAATATATACACACA
1 ATAATATATACACACA
81987896 ATTATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (17 bp):
ATAATATATACACACAC
Found at i:81988719 original size:22 final size:22
Alignment explanation
Indices: 81988685--81988726 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
81988675 ATAAAATTAA
81988685 AAAAAGAAAAATGAATCAATCC
1 AAAAAGAAAAATGAATCAATCC
* *
81988707 AAAAATAATAATGAATCAAT
1 AAAAAGAAAAATGAATCAAT
81988727 TCATTCTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.64, C:0.10, G:0.07, T:0.19
Consensus pattern (22 bp):
AAAAAGAAAAATGAATCAATCC
Found at i:81989974 original size:10 final size:11
Alignment explanation
Indices: 81989939--81989975 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
81989929 ATAAATTTTA
81989939 AAAAATATTAT
1 AAAAATATTAT
*
81989950 TAAAA-ATTAT
1 AAAAATATTAT
81989960 AAAAATATTA-
1 AAAAATATTAT
81989970 AAAAAT
1 AAAAAT
81989976 TAAAAAGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 15 0.65
11 8 0.35
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAAATATTAT
Found at i:81989975 original size:19 final size:18
Alignment explanation
Indices: 81989936--81989991 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
81989926 TTTATAAATT
81989936 TTAAAAAATATTATTAAAAA
1 TTAAAAAATATTA--AAAAA
81989956 TTATAAAAATATTAAAAAA
1 TTA-AAAAATATTAAAAAA
* *
81989975 TTAAAAAGTAATAAAAA
1 TTAAAAAATATTAAAAA
81989992 GACCATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 12 0.36
19 8 0.24
20 3 0.09
21 10 0.30
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
TTAAAAAATATTAAAAAA
Found at i:81989987 original size:21 final size:19
Alignment explanation
Indices: 81989939--81989987 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
81989929 ATAAATTTTA
*
81989939 AAAAATATTATTAAAAATT
1 AAAAATAATATTAAAAATT
*
81989958 ATAAA-AATATTAAAAAATT
1 AAAAATAATATT-AAAAATT
81989977 AAAAAGTAATA
1 AAAAA-TAATA
81989988 AAAAGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 5 0.21
19 15 0.62
21 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAAATAATATTAAAAATT
Found at i:81990828 original size:18 final size:18
Alignment explanation
Indices: 81990773--81990828 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 18
81990763 ACTTTTCAAC
81990773 TTTTAAATAGTTTTGATTAAT
1 TTTTAAATA--TTT-ATTAAT
* *
81990794 TTTTAATTTTTTATTAAT
1 TTTTAAATATTTATTAAT
81990812 TTTTAGAATATTT-TTAA
1 TTTTA-AATATTTATTAA
81990829 ATGTATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 15 0.50
19 8 0.27
21 7 0.23
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTAAATATTTATTAAT
Found at i:81993479 original size:12 final size:13
Alignment explanation
Indices: 81993462--81993495 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
81993452 TAACCCACCC
81993462 ATCATCATCATT-
1 ATCATCATCATTG
81993474 ATCATCATCATTG
1 ATCATCATCATTG
81993487 A-CATCATCA
1 ATCATCATCA
81993496 GGTGAGTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 20 0.95
13 1 0.05
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (13 bp):
ATCATCATCATTG
Found at i:81998706 original size:44 final size:45
Alignment explanation
Indices: 81998656--81998748 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 45
81998646 TACGACATCT
81998656 ATTCCATTCAACCAAACACA-AGAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATA-AATTACTGATTACAGCTCTATTCC
*
81998700 ATTCCATTCAACCAAACAATTAAATTACTGATTATAGCTCTATTCC
1 ATTCCATTCAACCAAACAA-TAAATTACTGATTACAGCTCTATTCC
81998746 ATT
1 ATT
81998749 ACAGCTCTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 1 0.02
44 22 0.50
45 3 0.07
46 18 0.41
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (45 bp):
ATTCCATTCAACCAAACAATAAATTACTGATTACAGCTCTATTCC
Found at i:81998754 original size:16 final size:16
Alignment explanation
Indices: 81998730--81998784 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
81998720 TAAATTACTG
*
81998730 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
**
81998746 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTCC
*
81998762 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
81998778 ATTACAG
1 ATTACAG
81998785 TGAATCAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:81999663 original size:20 final size:20
Alignment explanation
Indices: 81999638--81999677 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
81999628 TAAGGTTTTT
81999638 CTTGAGCTAGAGAGAGAAAG
1 CTTGAGCTAGAGAGAGAAAG
* * *
81999658 CTTGAGTTAGTGTGAGAAAG
1 CTTGAGCTAGAGAGAGAAAG
81999678 TGAAAAACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (20 bp):
CTTGAGCTAGAGAGAGAAAG
Found at i:81999973 original size:24 final size:26
Alignment explanation
Indices: 81999946--81999995 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81999936 AATAAGTTAT
*
81999946 TTTTATACA-ATA-ATTATTTTTAAA
1 TTTTAGACATATATATTATTTTTAAA
*
81999970 TTTTAGACATATATTTTATTTTTAAA
1 TTTTAGACATATATATTATTTTTAAA
81999996 ATATAATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 3 0.14
26 11 0.50
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (26 bp):
TTTTAGACATATATATTATTTTTAAA
Found at i:82000111 original size:20 final size:20
Alignment explanation
Indices: 82000086--82000157 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 20
82000076 TGACTTACTA
82000086 AATATTTAATTACATTATAT
1 AATATTTAATTACATTATAT
* *
82000106 AATATTTATTATAAATTATTTAT
1 AATATTTAAT-TACATTA--TAT
*
82000129 ACTAATTTCAATTACATTATAT
1 AAT-ATTT-AATTACATTATAT
*
82000151 AGTATTT
1 AATATTT
82000158 GATAATTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
20 9 0.22
21 10 0.24
22 5 0.12
23 5 0.12
24 10 0.24
25 2 0.05
ACGTcount: A:0.42, C:0.06, G:0.01, T:0.51
Consensus pattern (20 bp):
AATATTTAATTACATTATAT
Found at i:82010366 original size:30 final size:29
Alignment explanation
Indices: 82010294--82010358 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
82010284 TGACGAGATT
* *
82010294 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
82010323 GGCACTAAGTGTGCATGCTGGAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG-AAAAATAC
82010353 GGCACT
1 GGCACT
82010359 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 21 0.64
30 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:82012589 original size:28 final size:28
Alignment explanation
Indices: 82012555--82012610 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
82012545 TGTGTATAAC
82012555 ACTTATTCATGATCATAAGATGGTATGT
1 ACTTATTCATGATCATAAGATGGTATGT
82012583 ACTTATTCATGATCATAAGATGGTATGT
1 ACTTATTCATGATCATAAGATGGTATGT
82012611 TTATAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (28 bp):
ACTTATTCATGATCATAAGATGGTATGT
Found at i:82014199 original size:46 final size:46
Alignment explanation
Indices: 82014132--82014252 Score: 199
Period size: 46 Copynumber: 2.6 Consensus size: 46
82014122 ACCCATAAGC
* *
82014132 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCACAAGT
*
82014178 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGT
82014224 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
82014253 TGCCCAAATA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
45 2 0.03
46 69 0.97
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGT
Found at i:82014271 original size:46 final size:45
Alignment explanation
Indices: 82014119--82014258 Score: 165
Period size: 46 Copynumber: 3.1 Consensus size: 45
82014109 TACCATGTAA
* * * ** *
82014119 CCCACCCATAAGCGAACTCGGACTCAACTCAACGAGCTTGGGCGTT
1 CCCATCCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGAATG
* * *
82014165 CGCATCCACAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT
1 CCCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATG
*
82014211 CGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATG
1 CCCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATG
82014255 CCCA
1 CCCA
82014259 AATATCCTAG
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
44 5 0.06
45 4 0.05
46 74 0.89
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.19
Consensus pattern (45 bp):
CCCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATG
Found at i:82016148 original size:7 final size:7
Alignment explanation
Indices: 82016136--82016164 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
82016126 TTTACAATAT
82016136 TATTATA
1 TATTATA
82016143 TATTATA
1 TATTATA
82016150 TA-TATA
1 TATTATA
82016156 TATTATA
1 TATTATA
82016163 TA
1 TA
82016165 AATAGGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TATTATA
Found at i:82016157 original size:13 final size:13
Alignment explanation
Indices: 82016139--82016164 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82016129 ACAATATTAT
82016139 TATATATTATATA
1 TATATATTATATA
82016152 TATATATTATATA
1 TATATATTATATA
82016165 AATAGGTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATTATATA
Found at i:82017185 original size:22 final size:22
Alignment explanation
Indices: 82017157--82017222 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
82017147 CTCCAATTAC
82017157 TAGCACATTAGTGCTCTCTGTT
1 TAGCACATTAGTGCTCTCTGTT
* * * *
82017179 TAGCACATTCGTGTTTTCTGTA
1 TAGCACATTAGTGCTCTCTGTT
82017201 TAGCAC-TTCAGTGCTCTCTGTT
1 TAGCACATT-AGTGCTCTCTGTT
82017223 CATTAGTGCA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
21 2 0.06
22 33 0.94
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (22 bp):
TAGCACATTAGTGCTCTCTGTT
Found at i:82018954 original size:27 final size:27
Alignment explanation
Indices: 82018924--82018992 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
82018914 ATAGTGAGTC
*
82018924 CGCACACTCAGTGCTATATAAT-CAACT
1 CGCACACTTAGTGCTAT-TAATCCAACT
*
82018951 CGCACACTTAGTGCTATTGATCCAACT
1 CGCACACTTAGTGCTATTAATCCAACT
82018978 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82018993 GTACAAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 3 0.08
27 36 0.92
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATTAATCCAACT
Found at i:82023391 original size:27 final size:26
Alignment explanation
Indices: 82023353--82023468 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 26
82023343 CAGCATGGCT
* *
82023353 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
82023379 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
82023407 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* * *
82023434 ACCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
82023461 ACCAGAAC
1 ACCAGAAC
82023469 GCTTTCCTCA
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 6 0.07
27 58 0.72
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:82023412 original size:54 final size:54
Alignment explanation
Indices: 82023353--82023468 Score: 171
Period size: 54 Copynumber: 2.1 Consensus size: 54
82023343 CAGCATGGCT
*
82023353 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * * *
82023407 ACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
82023461 ACCAGAAC
1 ACCAGAAC
82023469 GCTTTCCTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 38 0.68
55 18 0.32
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:82025113 original size:26 final size:26
Alignment explanation
Indices: 82025077--82025160 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
82025067 CATGAAATTC
82025077 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
82025103 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
82025129 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
82025155 TTATCA
1 TTATCA
82025161 ATTTGTACCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82029170 original size:27 final size:26
Alignment explanation
Indices: 82029133--82029247 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
82029123 AGCATGGCTG
* *
82029133 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
82029159 CCAGATACAGATAATCATGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
82029187 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
82029214 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
82029241 CCAGAAC
1 CCAGAAC
82029248 GCTTTCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.73
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:82029197 original size:54 final size:54
Alignment explanation
Indices: 82029133--82029247 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
82029123 AGCATGGCTG
*
82029133 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCATGGCAGAGCCA
* * ** *
82029187 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
82029241 CCAGAAC
1 CCAGAAC
82029248 GCTTTCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCATGGCAGAGCCA
Found at i:82030900 original size:26 final size:26
Alignment explanation
Indices: 82030864--82030947 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
82030854 CATGAAATTC
82030864 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
82030890 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
82030916 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
82030942 TTATCA
1 TTATCA
82030948 ATTTGTACCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82033906 original size:46 final size:46
Alignment explanation
Indices: 82033856--82034031 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82033846 TGGTTGAGCA
82033856 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82033902 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82033947 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82033995 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82034032 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82034012 original size:93 final size:93
Alignment explanation
Indices: 82033853--82034024 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82033843 GGATGGTTGA
* *
82033853 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82033918 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82033946 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82034011 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
82034025 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82036381 original size:28 final size:28
Alignment explanation
Indices: 82036350--82036405 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
82036340 CAAATTAGTC
82036350 CTTGGTTTTCAATTAAAACCAATTTCAA
1 CTTGGTTTTCAATTAAAACCAATTTCAA
82036378 CTTGGTTTTCAATTAAAACCAATTTCAA
1 CTTGGTTTTCAATTAAAACCAATTTCAA
82036406 AATTATTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (28 bp):
CTTGGTTTTCAATTAAAACCAATTTCAA
Found at i:82036414 original size:28 final size:28
Alignment explanation
Indices: 82036355--82036417 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 28
82036345 TAGTCCTTGG
* *
82036355 TTTTCAATTAAAACCAATTTCAACTTGG
1 TTTTCAATTAAAACCAATTTCAAATTGA
82036383 TTTTCAATTAAAACCAATTTCAAAATT-A
1 TTTTCAATTAAAACCAATTTC-AAATTGA
82036411 TTTTCAA
1 TTTTCAA
82036418 ATCAAGTCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.40, C:0.16, G:0.03, T:0.41
Consensus pattern (28 bp):
TTTTCAATTAAAACCAATTTCAAATTGA
Found at i:82037401 original size:23 final size:23
Alignment explanation
Indices: 82037351--82037401 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
82037341 GGAGAGTATT
*
82037351 TTATATTTAAGATTTATTTAATA
1 TTATATTTAAGATTTATTAAATA
* *
82037374 TTATATTTGATATTTA-TAAATA
1 TTATATTTAAGATTTATTAAATA
82037396 TATATA
1 T-TATA
82037402 AAATAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (23 bp):
TTATATTTAAGATTTATTAAATA
Found at i:82037435 original size:19 final size:18
Alignment explanation
Indices: 82037399--82037438 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
82037389 ATAAATATAT
* *
82037399 ATAAAATAATTTTTAAAA
1 ATAAAATAAATTTGAAAA
82037417 ATAATAATAAATTTGAAAA
1 ATAA-AATAAATTTGAAAA
82037436 ATA
1 ATA
82037439 CATATACTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
ATAAAATAAATTTGAAAA
Found at i:82041527 original size:18 final size:18
Alignment explanation
Indices: 82041504--82041546 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
82041494 GAATAGGTTT
82041504 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
82041522 TTAATTGAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
82041540 TTAATTA
1 TTAATTA
82041547 CACTTTGAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:82042308 original size:136 final size:136
Alignment explanation
Indices: 82042146--82042395 Score: 353
Period size: 136 Copynumber: 1.8 Consensus size: 136
82042136 ATTAATATGG
* * *
82042146 TTAATAATTTCAATTAAAATGGTGAAGTG-ATTTTTTTCTTAAATATACTCATTCCAACAAAAAT
1 TTAATAATTTCAATTAAAATGGTGAAGTGAATTTTTCT-TTAAACATACTCATTCCAA-AAAAAA
* * * *
82042210 AATACA-TATGTTAGTATGATTAGTTAGAAGGTGATTAAG-CAATGATTTTGTTAGTCCCAAGTT
64 AAAAAATTATGTTAATAAGATTAGTTAGAAGGTGATTAAGTC-ATGATTTTGTTAGTCCCAAGTT
82042273 ATAACACAT
128 ATAACACAT
* *
82042282 TTAATAATTTCAGTTAAAATGTTGAAGTGAATTTTTCTTTAAACATACTCATTCCAAAAAAAAAA
1 TTAATAATTTCAATTAAAATGGTGAAGTGAATTTTTCTTTAAACATACTCATTCCAAAAAAAAAA
82042347 AAAAGTTTATGTTAATAAGATTAGTTAGAAGGTGATTAAGTCATGATTT
66 AAAA--TTATGTTAATAAGATTAGTTAGAAGGTGATTAAGTCATGATTT
82042396 AATTAGAAGG
Statistics
Matches: 100, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
135 9 0.09
136 45 0.45
137 7 0.07
138 38 0.38
139 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (136 bp):
TTAATAATTTCAATTAAAATGGTGAAGTGAATTTTTCTTTAAACATACTCATTCCAAAAAAAAAA
AAAATTATGTTAATAAGATTAGTTAGAAGGTGATTAAGTCATGATTTTGTTAGTCCCAAGTTATA
ACACAT
Done.