Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 286 of 427
Found at i:82303524 original size:734 final size:734
Alignment explanation
Indices: 82302117--82303664 Score: 3015
Period size: 734 Copynumber: 2.1 Consensus size: 734
82302107 TGGTTTCGAC
82302117 AACGAGATTTTTGAATTAATAAGTTTTAAAGTGAATACTTTTTTATAGTGACACAAATTTTAAAA
1 AACGAGATTTTTGAATTAATAAGTTTTAAAGTGAATACTTTTTTATAGTGACACAAATTTTAAAA
82302182 TCATTTTCTAGTTCATATTGGAGGAAGTGTACTAAAAGACTATAAGCCTATTATTGGCAGCTCTG
66 TCATTTTCTAGTTCATATTGGAGGAAGTGTACTAAAAGACTATAAGCCTATTATTGGCAGCTCTG
82302247 TTCCAAATATTATTTTAGTGTCGTAACCGGTACGACTTGGTGTGTAGGGTTGGGTGGGTCGATTT
131 TTCCAAATATTATTTTAGTGTCGTAACCGGTACGACTTGGTGTGTAGGGTTGGGTGGGTCGATTT
82302312 TATCCCCACATGGTGTGTAGGGCTGGTACGAAGATGGTGTGTAGCGAATGGATTGGGTAGGATTC
196 TATCCCCACATGGTGTGTAGGGCTGGTACGAAGATGGTGTGTAGCGAATGGATTGGGTAGGATTC
82302377 TGTGTTTGCATACTATACTGAAATGGGCTAAGGTCCAGACTGCCACTGATACTGTAATGGGATCA
261 TGTGTTTGCATACTATACTGAAATGGGCTAAGGTCCAGACTGCCACTGATACTGTAATGGGATCA
*
82302442 AGTCCAGACTGTTACTGCTACTGTAAGAGGGGCTAAGGCCCCTAACTAAAACTGAGGGCTTAGGC
326 AGTCCAAACTGTTACTGCTACTGTAAGAGGGGCTAAGGCCCCTAACTAAAACTGAGGGCTTAGGC
82302507 TCAAATTGTGTTTACTCTGATTGTATGCTTTTATGAGATTTCATGCACTGAGTTTTCGTAAACTC
391 TCAAATTGTGTTTACTCTGATTGTATGCTTTTATGAGATTTCATGCACTGAGTTTTCGTAAACTC
*
82302572 ACCCATCTGTTAACTGTGCAGGAAATCCTCAGGCTTAGACGGATCGAGGTGACGGAGGACTCAGA
456 ACCCATCTGTTAACTGTGCAGGAAATCCTCAGGCTTAGACGGATCAAGGTGACGGAGGACTCAGA
82302637 GGTGGCCACTCGACGAAGTTTCTTTTAATATTATAATTAAGATTTTATTTTGGGTTTTATTATGT
521 GGTGGCCACTCGACGAAGTTTCTTTTAATATTATAATTAAGATTTTATTTTGGGTTTTATTATGT
82302702 AATAAGGCCTCTATAATTTTTTTAAATTTTTGGGGTTTATTTATTTTTGATTCATATCTGCTAGT
586 AATAAGGCCTCTATAATTTTTTTAAATTTTTGGGGTTTATTTATTTTTGATTCATATCTGCTAGT
*
82302767 AGTGGGATGCGGGTTTTCAAAAGATATGCATGATTTACCAAAATACCACGAATACGCAAAACCAT
651 AGTAGGATGCGGGTTTTCAAAAGATATGCATGATTTACCAAAATACCACGAATACGCAAAACCAT
82302832 TTCAAAAGCTTTTGCGATA
716 TTCAAAAGCTTTTGCGATA
82302851 AACGAGATTTTTGAATTAATAAGTTTTAAAGTGAATACTTTTTTATAGTGACACAAATTTTAAAA
1 AACGAGATTTTTGAATTAATAAGTTTTAAAGTGAATACTTTTTTATAGTGACACAAATTTTAAAA
82302916 TCATTTTCTAGTTCATATTGGAGGAAGTGTACTAAAAGACTATAAGCCTATTATTGGCAGCTCTG
66 TCATTTTCTAGTTCATATTGGAGGAAGTGTACTAAAAGACTATAAGCCTATTATTGGCAGCTCTG
*
82302981 TTCCAAATATTGTTTTAGTGTCGTAACCGGTACGACTTGGTGTGTAGGGTTGGGTGGGTCGATTT
131 TTCCAAATATTATTTTAGTGTCGTAACCGGTACGACTTGGTGTGTAGGGTTGGGTGGGTCGATTT
*
82303046 TATCCCCACATGGTGTGTAGGGTTGGTACGAAGATGGTGTGTAGCGAATGGATTGGGTAGGATTC
196 TATCCCCACATGGTGTGTAGGGCTGGTACGAAGATGGTGTGTAGCGAATGGATTGGGTAGGATTC
82303111 TGTGTTTGCATACTATACTGAAATGGGCTAAGGTCCAGACTGCCACTGATACTGTAATGGGATCA
261 TGTGTTTGCATACTATACTGAAATGGGCTAAGGTCCAGACTGCCACTGATACTGTAATGGGATCA
*
82303176 AGTCCAAACTGTTACTGCTACTGTAAGAGGGGCTAAGGCCCCTAACTGAAACTGAGGGCTTAGGC
326 AGTCCAAACTGTTACTGCTACTGTAAGAGGGGCTAAGGCCCCTAACTAAAACTGAGGGCTTAGGC
82303241 TCAAATTGTGTTTACTCTGATTGTATGCTTTTATGAGATTTCATGCACTGAGTTTTCGTAAACTC
391 TCAAATTGTGTTTACTCTGATTGTATGCTTTTATGAGATTTCATGCACTGAGTTTTCGTAAACTC
*
82303306 ACCCATCTGTTAATTGTGCAGGAAATCCTCAGGCTTAGACGGATCAAGGTGACGGAGGACTCAGA
456 ACCCATCTGTTAACTGTGCAGGAAATCCTCAGGCTTAGACGGATCAAGGTGACGGAGGACTCAGA
82303371 GGTGGCCACTCGACGAAGTTTCTTTTAATATTATAATTAAGATTTTATTTTGGGTTTTATTATGT
521 GGTGGCCACTCGACGAAGTTTCTTTTAATATTATAATTAAGATTTTATTTTGGGTTTTATTATGT
*
82303436 AATAAGGCCTCTATAATTTTTTTAAATTTTTGGGGTTTATTTATTTTTTATTCATATCTGCTAGT
586 AATAAGGCCTCTATAATTTTTTTAAATTTTTGGGGTTTATTTATTTTTGATTCATATCTGCTAGT
82303501 AGTAGGATGCGGGTTTTCAAAAGATATGCATGATTTACCAAAATACCACGAATACGCAAAACCAT
651 AGTAGGATGCGGGTTTTCAAAAGATATGCATGATTTACCAAAATACCACGAATACGCAAAACCAT
82303566 TTCAAAAGCTTTTGCGATA
716 TTCAAAAGCTTTTGCGATA
*
82303585 AACGAGATTTTTGAATTAATAAGTTTTAAAGTGAATACTTTTTTATAGTGACGCAAATTTTAAAA
1 AACGAGATTTTTGAATTAATAAGTTTTAAAGTGAATACTTTTTTATAGTGACACAAATTTTAAAA
82303650 TCATTTTCTAGTTCA
66 TCATTTTCTAGTTCA
82303665 CACAAAGAGG
Statistics
Matches: 805, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
734 805 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (734 bp):
AACGAGATTTTTGAATTAATAAGTTTTAAAGTGAATACTTTTTTATAGTGACACAAATTTTAAAA
TCATTTTCTAGTTCATATTGGAGGAAGTGTACTAAAAGACTATAAGCCTATTATTGGCAGCTCTG
TTCCAAATATTATTTTAGTGTCGTAACCGGTACGACTTGGTGTGTAGGGTTGGGTGGGTCGATTT
TATCCCCACATGGTGTGTAGGGCTGGTACGAAGATGGTGTGTAGCGAATGGATTGGGTAGGATTC
TGTGTTTGCATACTATACTGAAATGGGCTAAGGTCCAGACTGCCACTGATACTGTAATGGGATCA
AGTCCAAACTGTTACTGCTACTGTAAGAGGGGCTAAGGCCCCTAACTAAAACTGAGGGCTTAGGC
TCAAATTGTGTTTACTCTGATTGTATGCTTTTATGAGATTTCATGCACTGAGTTTTCGTAAACTC
ACCCATCTGTTAACTGTGCAGGAAATCCTCAGGCTTAGACGGATCAAGGTGACGGAGGACTCAGA
GGTGGCCACTCGACGAAGTTTCTTTTAATATTATAATTAAGATTTTATTTTGGGTTTTATTATGT
AATAAGGCCTCTATAATTTTTTTAAATTTTTGGGGTTTATTTATTTTTGATTCATATCTGCTAGT
AGTAGGATGCGGGTTTTCAAAAGATATGCATGATTTACCAAAATACCACGAATACGCAAAACCAT
TTCAAAAGCTTTTGCGATA
Found at i:82304171 original size:23 final size:25
Alignment explanation
Indices: 82304119--82304177 Score: 79
Period size: 23 Copynumber: 2.4 Consensus size: 25
82304109 GAAAATATGA
*
82304119 AATAAAATATTCTAATATAATTTAT
1 AATAAAATATTCAAATATAATTTAT
82304144 AATAAAATATT-AAAT-TAATTTGAT
1 AATAAAATATTCAAATATAATTT-AT
82304168 -ATAAAATATT
1 AATAAAATATT
82304178 TGATATTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 16 0.50
24 5 0.16
25 11 0.34
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (25 bp):
AATAAAATATTCAAATATAATTTAT
Found at i:82306854 original size:42 final size:42
Alignment explanation
Indices: 82306733--82306857 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 42
82306723 GTGTGGGGCA
* *
82306733 AGTTCGAAAGTTACACGGCCTGGCACACGGGCGTGTGACCCT
1 AGTTCAAAAGTTACACGGCCTGGCACACGGGCGTGTGTCCCT
* * * * ** ** *
82306775 A-CTCAGAGAGTTATACGG-GTGAGGGCACGACCATGTGTCCCT
1 AGTTCA-AAAGTTACACGGCCTG-GCACACGGGCGTGTGTCCCT
82306817 AGTTCAAAAGTTACACGGCCTGGCACACGGGCGTGTGTCCC
1 AGTTCAAAAGTTACACGGCCTGGCACACGGGCGTGTGTCCC
82306858 GGCCGTGTGA
Statistics
Matches: 59, Mismatches: 20, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
41 4 0.07
42 50 0.85
43 5 0.08
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.20
Consensus pattern (42 bp):
AGTTCAAAAGTTACACGGCCTGGCACACGGGCGTGTGTCCCT
Found at i:82307676 original size:30 final size:30
Alignment explanation
Indices: 82307635--82307691 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
82307625 CTTTTTTATT
82307635 TTTTTGAATTTTTAT-AATTTTATAATTTTA
1 TTTTTGAATTTTTATAAATTTTA-AATTTTA
*
82307665 TTTTTGTATTTTTATAAATTTTAAATT
1 TTTTTGAATTTTTATAAATTTTAAATT
82307692 ATTTATCGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 18 0.72
31 7 0.28
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (30 bp):
TTTTTGAATTTTTATAAATTTTAAATTTTA
Found at i:82307677 original size:22 final size:23
Alignment explanation
Indices: 82307642--82307687 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
82307632 ATTTTTTTGA
82307642 ATTTTTATAATTTTAT-AATTTT
1 ATTTTTATAATTTTATAAATTTT
* *
82307664 ATTTTTGTATTTTTATAAATTTT
1 ATTTTTATAATTTTATAAATTTT
82307687 A
1 A
82307688 AATTATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
ATTTTTATAATTTTATAAATTTT
Found at i:82320815 original size:11 final size:10
Alignment explanation
Indices: 82320801--82320859 Score: 52
Period size: 11 Copynumber: 5.9 Consensus size: 10
82320791 AAAAAATTCA
82320801 AAAATATATAT
1 AAAATAT-TAT
*
82320812 AAAATATTTTT
1 AAAATA-TTAT
82320823 AAAAT-TTA-
1 AAAATATTAT
82320831 AAAATAATTAT
1 AAAAT-ATTAT
82320842 AAAA-ATTAT
1 AAAATATTAT
*
82320851 AAAAAATTA
1 AAAATATTA
82320860 ATTAAATGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
8 5 0.12
9 11 0.27
10 7 0.17
11 17 0.41
12 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATATTAT
Found at i:82320834 original size:19 final size:21
Alignment explanation
Indices: 82320800--82320855 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
82320790 AAAAAAATTC
*
82320800 AAAAATATATATAAAAT-ATTTT
1 AAAAAT-TATA-AAAATAATTAT
*
82320822 TAAAATT-TAAAAATAATTAT
1 AAAAATTATAAAAATAATTAT
82320842 AAAAATTATAAAAA
1 AAAAATTATAAAAA
82320856 ATTAATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 5 0.17
20 12 0.41
21 7 0.24
22 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAATTATAAAAATAATTAT
Found at i:82320857 original size:30 final size:30
Alignment explanation
Indices: 82320791--82320858 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
82320781 TTAGATTTTA
82320791 AAAAAATTCAAAAATATATATAAAATATTT
1 AAAAAATTCAAAAATATATATAAAATATTT
** *
82320821 TTAAAATTTAAAAATA-ATTATAAAA-ATTAT
1 AAAAAATTCAAAAATATA-TATAAAATATT-T
82320851 AAAAAATT
1 AAAAAATT
82320859 AATTAAATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
29 4 0.13
30 27 0.87
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.35
Consensus pattern (30 bp):
AAAAAATTCAAAAATATATATAAAATATTT
Found at i:82320858 original size:19 final size:19
Alignment explanation
Indices: 82320791--82320859 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 19
82320781 TTAGATTTTA
82320791 AAAAAATTCA-AAAATATATAT
1 AAAAAATT-ATAAAA-AT-TAT
* * *
82320812 AAAATATTTTTAAAATT-T
1 AAAAAATTATAAAAATTAT
82320830 AAAAATAATTATAAAAATTAT
1 -AAAA-AATTATAAAAATTAT
82320851 AAAAAATTA
1 AAAAAATTA
82320860 ATTAAATGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 1 0.03
19 10 0.26
20 16 0.42
21 11 0.29
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAAATTATAAAAATTAT
Found at i:82326022 original size:26 final size:26
Alignment explanation
Indices: 82325993--82326100 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82325983 TGGTACAAAT
82325993 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82326019 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82326045 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82326071 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82326097 TGAT
1 TGAT
82326101 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82327614 original size:26 final size:26
Alignment explanation
Indices: 82327584--82327636 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
82327574 TTTATAGTTT
82327584 TACCCCTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
82327610 TACCCCTAGGGTTAAATTGACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
82327636 T
1 T
82327637 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:82333048 original size:71 final size:71
Alignment explanation
Indices: 82332964--82333127 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82332954 CGATTTGTCT
82332964 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82333029 CTTTCA
66 CTTTCA
82333035 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82333100 CTTTCA
66 CTTTCA
82333106 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82333128 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:82333165 original size:71 final size:70
Alignment explanation
Indices: 82332964--82333161 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
82332954 CGATTTGTCT
* * * *
82332964 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82333029 CTTTCA
65 CTTTCA
* * * *
82333035 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82333100 CTTTCA
65 CTTTCA
* *
82333106 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
82333162 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:82340160 original size:71 final size:71
Alignment explanation
Indices: 82340076--82340239 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
82340066 CGATTTGTCT
82340076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82340141 CTTTCA
66 CTTTCA
82340147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
82340212 CTTTCA
66 CTTTCA
82340218 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
82340240 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:82340277 original size:71 final size:70
Alignment explanation
Indices: 82340076--82340273 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
82340066 CGATTTGTCT
* * * *
82340076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82340141 CTTTCA
65 CTTTCA
* * * *
82340147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
82340212 CTTTCA
65 CTTTCA
* *
82340218 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
82340274 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:82344236 original size:48 final size:47
Alignment explanation
Indices: 82344135--82344346 Score: 186
Period size: 47 Copynumber: 4.5 Consensus size: 47
82344125 TTTGTGTGCC
* * ** *
82344135 AGTGTAAGACATGTCTGGGACAT-GCATCAACCACAT-A-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCA-CAGCCA-TTGAGACAAGAGCT
* * *
82344181 AGTGTAAGACTATGTCTTGGACATGGCACCGGCATTGAGACAAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACATGGCACAGCCATTGAGACAAGAGCT
* **
82344229 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCACAT-A-ATGAGAGCCT
1 AGTGTAAGACATGTCTGGGACATGGCA-CAGCCA-TTGAGACAAGAG-CT
* **
82344276 -GTGTAAGACTATGTCTTGGACATGGCATTGCCATTGAGACAAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACATGGCACAGCCATTGAGACAAGAGCT
82344323 AGTGTAAGACATGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
82344347 CATCGGCCTC
Statistics
Matches: 133, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
46 29 0.22
47 67 0.50
48 37 0.28
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCACAGCCATTGAGACAAGAGCT
Found at i:82344283 original size:46 final size:47
Alignment explanation
Indices: 82344132--82344535 Score: 273
Period size: 46 Copynumber: 8.6 Consensus size: 47
82344122 TTATTTGTGT
*
82344132 GCCAGTGTAAGACATGTCTGGGACATGCATCAACCACATA-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATAGATGAGA
* * * * **
82344178 GCCAGTGTAAGACTATGTCTTGGACATGGCA-CCGGCA-TTGAGACAAGA
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCCACAT-AGATGAGA
*
82344226 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATA-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATAGATGAGA
* * * * **
82344272 GCCTGTGTAAGACTATGTCTTGGACATGGCAT-TGCCA-TTGAGACAAGA
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCAGCCACAT-AGATGAGA
* * *
82344320 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCA-AGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATAGATG-AGA
* * * *
82344366 GCCAGTGTAAGACATGTCTAGGACATGCATTAGCTACA-AGAT--GT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATAGATGAGA
* * * * *
82344410 GTCAGTGTAAGACCATGTCTGGGACATGGCAT-TGACACGTATA-AAG-GT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC--ATAGATGAGA
* *
82344458 GCTAGTGTAAGACCATGTCTGGGACATGACATCAG-TACGGATATG-TGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCAGCCAC--ATA-GATGAGA
* *
82344508 GCTAGTATAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
82344536 TCGTTAGCCT
Statistics
Matches: 283, Mismatches: 50, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
44 11 0.04
45 16 0.06
46 81 0.29
47 69 0.24
48 76 0.27
49 2 0.01
50 28 0.10
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATAGATGAGA
Found at i:82344296 original size:94 final size:94
Alignment explanation
Indices: 82344135--82344392 Score: 405
Period size: 94 Copynumber: 2.8 Consensus size: 94
82344125 TTTGTGTGCC
*
82344135 AGTGTAAGACATGTCTGGGACATGCATCAACCACATAATGAGAGCCAGTGTAAGACTATGTCTTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACTATGTCTTG
*
82344200 GACATGGCACCGGCATTGAGACAAGAGCT
66 GACATGGCACCGCCATTGAGACAAGAGCT
*
82344229 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATAATGAGAGCCTGTGTAAGACTATGTCTTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACTATGTCTTG
**
82344294 GACATGGCATTGCCATTGAGACAAGAGCT
66 GACATGGCACCGCCATTGAGACAAGAGCT
* *
82344323 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCA-AGATGTA-AGCCAGTGTAAGAC-ATGTCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATA-ATG-AGAGCCAGTGTAAGACTATGTCT
*
82344385 AGGACATG
64 TGGACATG
82344393 CATTAGCTAC
Statistics
Matches: 153, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
93 14 0.09
94 138 0.90
95 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATAATGAGAGCCAGTGTAAGACTATGTCTTG
GACATGGCACCGCCATTGAGACAAGAGCT
Found at i:82353365 original size:48 final size:48
Alignment explanation
Indices: 82353239--82353423 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
82353229 GCACGTCACC
*
82353239 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
82353289 TATATATTTCACATT-GACCACTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
82353337 TACACATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
82353385 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
82353424 TGCATGTTCA
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
48 80 0.66
49 2 0.02
50 40 0.33
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:82353428 original size:98 final size:97
Alignment explanation
Indices: 82353239--82353422 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 97
82353229 GCACGTCACC
* *
82353239 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACACATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
82353304 GACCACTCAGCTTTACCACATATGCATATCTCA
65 GACCACTCAGCTTTACCACATATGCATATCTCA
*
82353337 TACACATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATT-
1 TACACATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
* *
82353400 AGCCATTCGGCTTTACCACATAT
66 A-CCACTCAGCTTTACCACATAT
82353423 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 34 0.43
98 45 0.56
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (97 bp):
TACACATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCACTCAGCTTTACCACATATGCATATCTCA
Found at i:82353529 original size:47 final size:47
Alignment explanation
Indices: 82353393--82353539 Score: 177
Period size: 47 Copynumber: 3.1 Consensus size: 47
82353383 CATACATATT
* * * *
82353393 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
82353440 CCACATTGGCCATTCGGCGTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
82353487 TCATATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82353534 TCACAT
1 TCACAT
82353540 AAAATCCTAA
Statistics
Matches: 83, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 83 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:82357585 original size:40 final size:40
Alignment explanation
Indices: 82357541--82357849 Score: 489
Period size: 40 Copynumber: 7.8 Consensus size: 40
82357531 CCAGCATGAT
* * * *
82357541 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82357581 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82357621 TGCTCTTC-GGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82357660 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82357700 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82357740 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
82357780 TGCTCTT--GGACTTAGTCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
82357818 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
82357850 CTCAATTCTC
Statistics
Matches: 251, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
38 37 0.15
39 37 0.15
40 177 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:82357828 original size:118 final size:118
Alignment explanation
Indices: 82357541--82357849 Score: 503
Period size: 119 Copynumber: 2.6 Consensus size: 118
82357531 CCAGCATGAT
* * * * * * *
82357541 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTC-GGACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
82357606 CATCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATACATCACTAGCACGAA
65 TATCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATACATCACTAGCACGAA
*
82357660 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTC-GGACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
82357725 TATCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
65 TATCACTAGCACGAATGCTCTTC-GGACTTAGTCCGGATACATCACTAGCACGAA
82357780 TGCTCTT-GGACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 TGCTCTTCGGACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
82357844 ATCACT
66 ATCACT
82357850 CTCAATTCTC
Statistics
Matches: 181, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
118 62 0.34
119 81 0.45
120 38 0.21
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (118 bp):
TGCTCTTCGGACTTAGTCCAGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
ATCACTAGCACGAATGCTCTTCGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:82359177 original size:37 final size:37
Alignment explanation
Indices: 82359118--82359226 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
82359108 AGCTCAGACG
* *
82359118 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
82359155 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
82359192 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
82359227 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:82359496 original size:48 final size:49
Alignment explanation
Indices: 82359372--82359508 Score: 224
Period size: 50 Copynumber: 2.8 Consensus size: 49
82359362 GCACGTCGCC
*
82359372 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
*
82359422 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
82359470 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
82359509 TGCATGTTCA
Statistics
Matches: 82, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
48 37 0.45
49 2 0.02
50 43 0.52
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:82359614 original size:47 final size:47
Alignment explanation
Indices: 82359478--82359624 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 47
82359468 CATACATATT
* * * *
82359478 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
82359525 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
82359572 TCATATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
82359619 TCACAT
1 TCACAT
82359625 AAAATCCTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:82361095 original size:2 final size:2
Alignment explanation
Indices: 82361088--82361113 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82361078 TGCCGAATAC
82361088 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82361114 CATCAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82364136 original size:5 final size:5
Alignment explanation
Indices: 82364128--82364152 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
82364118 ATTATTAAAC
82364128 TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA
82364153 ATATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:82364169 original size:30 final size:32
Alignment explanation
Indices: 82364135--82364207 Score: 77
Period size: 30 Copynumber: 2.5 Consensus size: 32
82364125 AACTAATATA
*
82364135 ATATAATATAATATAATAA-TAT-TATTTTAT
1 ATATAATATAATATAATAAGTATGTATTTAAT
* *
82364165 ATATACT-TAA-ATATTAAGTATGTATTTAAT
1 ATATAATATAATATAATAAGTATGTATTTAAT
82364195 ATA-AATA-AATATA
1 ATATAATATAATATA
82364208 TGTATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
28 6 0.17
29 10 0.29
30 19 0.54
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (32 bp):
ATATAATATAATATAATAAGTATGTATTTAAT
Found at i:82364205 original size:28 final size:27
Alignment explanation
Indices: 82364133--82364206 Score: 69
Period size: 28 Copynumber: 2.6 Consensus size: 27
82364123 TAAACTAATA
*
82364133 TAATATAATATAATATAATAATATTATTT
1 TAATATAA-ATAA-ATATTAATATTATTT
**
82364162 TATATATACTTAAATATTAAGTATGTA-TT
1 TA-ATATAAATAAATATTAA-TAT-TATTT
82364191 TAATATAAATAAATAT
1 TAATATAAATAAATAT
82364207 ATGTATATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 18 0.49
29 12 0.32
30 7 0.19
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (27 bp):
TAATATAAATAAATATTAATATTATTT
Found at i:82366527 original size:2 final size:2
Alignment explanation
Indices: 82366515--82366545 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
82366505 TAATTATTTA
*
82366515 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82366546 CATTATGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82369341 original size:19 final size:19
Alignment explanation
Indices: 82369295--82369342 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
82369285 GTATATATTT
82369295 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
82369313 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
82369332 TAAGTTTTATT
1 TAAATTTTATT
82369343 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:82373552 original size:35 final size:35
Alignment explanation
Indices: 82373482--82373552 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
82373472 CACTTGCCTC
* *
82373482 TTCCCACTCTCCCATGCTGTCTGCCATCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
* *
82373517 TTCCCATTCTCCCATGCTGTCTGCCACCAATACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
82373552 T
1 T
82373553 CACACACTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.18, C:0.44, G:0.10, T:0.28
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
Found at i:82373953 original size:12 final size:12
Alignment explanation
Indices: 82373938--82373980 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
82373928 TAAAACATAA
82373938 AAAAAAATATAC
1 AAAAAAATATAC
*
82373950 AAAAAGATATAC
1 AAAAAAATATAC
82373962 AAAAAAATATAC
1 AAAAAAATATAC
82373974 AAAAAAA
1 AAAAAAA
82373981 AAAAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAAATATAC
Found at i:82374699 original size:2 final size:2
Alignment explanation
Indices: 82374623--82374683 Score: 65
Period size: 2 Copynumber: 32.0 Consensus size: 2
82374613 ATCATTTCTA
* * *
82374623 AT AT GT AT AT AT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
82374663 AT AT AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
82374684 GCCATTAGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
1 3 0.06
2 47 0.94
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (2 bp):
AT
Found at i:82379387 original size:12 final size:12
Alignment explanation
Indices: 82379367--82379416 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
82379357 TATATATATT
*
82379367 AAAACATAAAAA
1 AAAATATAAAAA
82379379 AAAATAT---AA
1 AAAATATAAAAA
*
82379388 AAAAGATAAAAA
1 AAAATATAAAAA
82379400 AAAATATACAAAA
1 AAAATATA-AAAA
82379413 AAAA
1 AAAA
82379417 AAAAATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 8 0.26
12 15 0.48
13 8 0.26
ACGTcount: A:0.82, C:0.04, G:0.02, T:0.12
Consensus pattern (12 bp):
AAAATATAAAAA
Found at i:82379396 original size:21 final size:20
Alignment explanation
Indices: 82379362--82379421 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
82379352 ACCTATATAT
* *
82379362 ATATTAAAACATAAAAAAAA
1 ATATAAAAAAATAAAAAAAA
82379382 ATATAAAAAAGATAAAAAAAA
1 ATATAAAAAA-ATAAAAAAAA
82379403 ATATACAAAAAA-AAAAAAA
1 ATATA-AAAAAATAAAAAAA
82379422 TTTTTTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.42
21 16 0.44
22 5 0.14
ACGTcount: A:0.80, C:0.03, G:0.02, T:0.15
Consensus pattern (20 bp):
ATATAAAAAAATAAAAAAAA
Found at i:82379530 original size:11 final size:11
Alignment explanation
Indices: 82379508--82379536 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
82379498 TTCCCCTCCT
82379508 TCTCTC-TCCC
1 TCTCTCTTCCC
82379518 TCTCTCTTCCC
1 TCTCTCTTCCC
82379529 TCTCTCTT
1 TCTCTCTT
82379537 TTCTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (11 bp):
TCTCTCTTCCC
Found at i:82380130 original size:31 final size:30
Alignment explanation
Indices: 82380062--82380147 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 30
82380052 TTCTAATATG
* **
82380062 TATATATATATATATATATATATATGTGTAT
1 TATATATATATAT-TATGTATATATGTCCAT
82380093 TATATATATATATTATGTATATATG-CCAT
1 TATATATATATATTATGTATATATGTCCAT
* *
82380122 TAGTTATATATTTCTTATGTATATAT
1 TA--TATATATATATTATGTATATAT
82380148 TCTTAAATAC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
29 4 0.08
30 11 0.23
31 33 0.69
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.52
Consensus pattern (30 bp):
TATATATATATATTATGTATATATGTCCAT
Found at i:82380132 original size:2 final size:2
Alignment explanation
Indices: 82380057--82380116 Score: 70
Period size: 2 Copynumber: 31.0 Consensus size: 2
82380047 ATCATTTCTA
* * *
82380057 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT GT GT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
82380098 AT AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
82380117 GCCATTAGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
1 2 0.04
2 48 0.96
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.52
Consensus pattern (2 bp):
AT
Found at i:82392485 original size:14 final size:14
Alignment explanation
Indices: 82392466--82392494 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
82392456 CGCTGAGGTA
82392466 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
82392480 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
82392494 T
1 T
82392495 CATCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:82392752 original size:163 final size:162
Alignment explanation
Indices: 82392407--82392970 Score: 913
Period size: 163 Copynumber: 3.5 Consensus size: 162
82392397 CAAATTCTAC
*
82392407 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
82392472 ATTTCTGTTTTTCAATTTCTGTTCATCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 ATTTCTGTTTTTCAATTTCTGTTCATC----AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
82392537 CTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCAT
127 CTCAAGACACGTTGAGGTAATTTTAATTTCTGTT-AT
* * *
82392574 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTCCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
*
82392639 ATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 ATTTCTGTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
82392704 GGACACGTTGAGGTAATTTTAATTTCTGTTCAT
131 AGACACGTTGAGGTAATTTTAATTTCTGTT-AT
* *
82392737 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACATGCTGAGGTATTTTCA
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
82392802 ATTTCTGTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 ATTTCTGTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* *
82392867 AGACACGTTGAGGTAATTTCAATTTCTGTTTT
131 AGACACGTTGAGGTAATTTTAATTTCTGTTAT
* *
82392899 C--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTAATTTC
1 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGCTCACACGCTGAGGTATTTTC
82392959 AATTTCTGTTTT
65 AATTTCTGTTTT
82392971 CAAAATTCAA
Statistics
Matches: 382, Mismatches: 14, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
158 27 0.07
160 37 0.10
161 2 0.01
162 2 0.01
163 225 0.59
167 89 0.23
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (162 bp):
CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATTTTCA
ATTTCTGTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
AGACACGTTGAGGTAATTTTAATTTCTGTTAT
Found at i:82392815 original size:14 final size:14
Alignment explanation
Indices: 82392796--82392824 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
82392786 TGCTGAGGTA
82392796 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
82392810 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
82392824 T
1 T
82392825 CATCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:82392928 original size:72 final size:73
Alignment explanation
Indices: 82392811--82393780 Score: 1043
Period size: 72 Copynumber: 12.7 Consensus size: 73
82392801 AATTTCTGTT
*
82392811 TTTCAATTTCTG--TTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
1 TTTCAATTTCTGTTTTCA-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
82392874 TTGAGGTAA
65 TTGAGGTAA
82392883 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
82392947 TGAGGTAA
66 TGAGGTAA
* **
82392955 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
*
82393019 TGAGGTAT
66 TGAGGTAA
* *
82393027 TTTCAATTTCTGTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTT-AGCCTC-GGTTCAC
1 TTTCAATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---AC
* *
82393090 ATGCTGAGGT-A
62 ACGTTGAGGTAA
*
82393101 TTCTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TT-TCAATTTCTGT-TTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGA
82393166 CACGTTGAGGTAA
61 CACGTTGAGGTAA
* * * *
82393179 TTTTAATTTCTGTTCATCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTC-AGCTCA
1 TTTCAATTTCTGTT-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---A
* * *
82393243 CGCGCTGAGGTAT
61 CACGTTGAGGTAA
82393256 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAATTTCTG-TTTTCAA------------AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
82393321 CCTCAGGACACGTTGAGGTAA
53 CCTCAAGACACGTTGAGGTAA
* * *
82393342 TTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC-AGCTCA
1 TTTCAATTTCTGTT-TTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---A
* *
82393406 CACGCTGAGGTAT
61 CACGTTGAGGTAA
82393419 TTTCAATTT-TGTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTCAATTTCTG-TTTTCAA------------AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
82393483 CCTCAAGACACGTTGAGGTAA
53 CCTCAAGACACGTTGAGGTAA
82393504 TTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
82393568 TGAGGTAA
66 TGAGGTAA
* **
82393576 TTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
*
82393640 TGAGGTAT
66 TGAGGTAA
* * *
82393648 TTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC-
1 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACG
*
82393711 ATGCTAGGT-A
65 TTG--AGGTAA
*
82393721 TTCTCAATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGC
1 TT-TCAATTTCTGT-TTTC-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
82393781 TTCAGATCAC
Statistics
Matches: 778, Mismatches: 57, Indels: 118
0.82 0.06 0.12
Matches are distributed among these distances:
72 294 0.38
73 45 0.06
74 49 0.06
75 101 0.13
76 11 0.01
77 68 0.09
78 37 0.05
79 6 0.01
80 36 0.05
84 1 0.00
85 28 0.04
86 26 0.03
87 38 0.05
88 37 0.05
89 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
TGAGGTAA
Found at i:82393274 original size:14 final size:14
Alignment explanation
Indices: 82393255--82393283 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
82393245 CGCTGAGGTA
82393255 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
82393269 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
82393283 T
1 T
82393284 CGTCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:82393321 original size:163 final size:161
Alignment explanation
Indices: 82393125--82393741 Score: 853
Period size: 163 Copynumber: 3.9 Consensus size: 161
82393115 CTTTCAAAAA
*
82393125 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTAATTTCT
* * *
82393190 GTTCATCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACGCGCTGAGGTA
66 GTT-ATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTA
82393255 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTC
129 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTC
*
82393288 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTAATTTCT
*
82393353 GTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTA
66 GTT-ATC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTA
82393418 TTTTCAATTT-TGTTTTTCAATTTCTGTTCGTC
129 TTTTCAATTTCTGTTTTTCAATTTCTGTTCGTC
*
82393450 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTAATTTCT
* * *
82393515 GTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGTTGAGGTAA
66 GTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGCTCACACGCTGAGGTAT
82393576 TTTCAATTTCTG-TTTTC-A------------
130 TTTCAATTTCTGTTTTTCAATTTCTGTTCGTC
* **
82393594 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTT-AATTTC
* * * * *
82393658 TGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCT-AGGTAT
65 TGTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTAT
* *
82393722 TCTCAATTTCTGTCTTTCAA
130 TTTCAATTTCTGTTTTTCAA
82393742 AAAAAAAAAT
Statistics
Matches: 426, Mismatches: 19, Indels: 33
0.89 0.04 0.07
Matches are distributed among these distances:
143 4 0.01
144 63 0.15
145 37 0.09
146 16 0.04
147 9 0.02
148 1 0.00
156 1 0.00
157 26 0.06
158 2 0.00
159 37 0.09
160 2 0.00
161 2 0.00
162 88 0.21
163 138 0.32
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (161 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTTAATTTCT
GTTATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACACGCTGAGGTATT
TTCAATTTCTGTTTTTCAATTTCTGTTCGTC
Found at i:82393748 original size:622 final size:625
Alignment explanation
Indices: 82392407--82393785 Score: 2500
Period size: 622 Copynumber: 2.2 Consensus size: 625
82392397 CAAATTCTAC
* * * ** *
82392407 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTCACGCGCTGAGGTATTTTCA
1 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
*
82392472 ATTTCTGTTTTTCAATTTCTGTTCATCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 ATTTCTGTCTTTCAA---------A--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
82392537 CTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGG
120 CTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGG
82392602 TGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTCCAATTTCTGTTTTTCAATTTCTGTTCGTCA
185 TGAGTTGAGTCTCAGCTCACGCGCTGAGGTATTTCCAATTTCTGTTTTTCAATTTCTGTTCGTCA
82392667 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTG
250 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTG
*
82392732 TTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACATGCTGAGGTAT
315 TTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTAT
82392797 TTTCAATTTCTGTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
380 TTTCAATTTCTGTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
82392862 CCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTG
445 CCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTG
82392927 AGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCG
510 AGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCG
82392992 AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
575 AGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
82393043 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTT-AGCCTCGGTTCACATGCTGAGGTATTCTCA
1 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
82393107 ATTTCTGTCTTTC--AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
66 ATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
*
82393170 TTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGTC
131 TTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTC
*
82393235 TCAGCTCACGCGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCA
196 TCAGCTCACGCGCTGAGGTATTTCCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCA
82393300 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAA
261 TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAA
82393365 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCAATTT-T
326 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCAATTTCT
*
82393429 GTTTTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
391 GTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
82393494 GTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
456 GTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
82393559 AAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
521 AAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
82393624 GAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
586 GAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
82393664 C-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCT-AGGTATTCTCA
1 CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
* *
82393727 ATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAATTGAGCTTCAG
66 ATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
82393786 ATCACACACT
Statistics
Matches: 727, Mismatches: 13, Indels: 20
0.96 0.02 0.03
Matches are distributed among these distances:
620 56 0.08
621 254 0.35
622 346 0.48
624 1 0.00
635 37 0.05
636 33 0.05
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (625 bp):
CAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTCTCA
ATTTCTGTCTTTCAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
TTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTC
TCAGCTCACGCGCTGAGGTATTTCCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAACTCA
TATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAA
AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGCTCACACGCTGAGGTATTTTCAATTTCT
GTTTTTCAATTTCTGTTCATCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTT
GAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTTTT
Found at i:82393753 original size:459 final size:443
Alignment explanation
Indices: 82392648--82393785 Score: 1475
Period size: 459 Copynumber: 2.5 Consensus size: 443
82392638 AATTTCTGTT
*
82392648 TTTCAATTTCTGTTCGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTT
1 TTTCAATTTCTGTT-TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTT
82392713 GAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC
65 GAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC
82392778 AGCTCACATGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTTCATCAAAATCAACTCATA
130 AGCTCACATGCTGAGGTATTTTCAATTTCTGTTTTTCAA------TTCATCAAAATCAACTCATA
* *
82392843 TTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCA
189 TTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTGTTATCAAAAATCA
* *
82392908 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCA
254 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCA
*
82392973 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
319 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
* * *
82393038 GTTTTCAAAAAAATCAACTTATATTGCGAGAGGTGAGTTAGCCTCGGTTCACATGCTGAGGTA
384 GTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTAGCCTCAG-T-ACACGCTGAGGTA
82393101 TTCTCAATTTCTGTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
1 TT-TCAATTTCTGT-TTTC-----AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
82393166 CACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTG
59 CACGTTGAGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
** *
82393231 AGTCTCAGCTCACGCGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTTCGTCAAAATCAA
124 AGTCTCAGCTCACATGCTGAGGTATTTTCAATTTCTGTTTTTCAA------TTCATCAAAATCAA
*
82393296 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTTAATTTCTGTTCATCA
183 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTGTT-ATC-
*
82393361 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTC-AGCTCACACGCTGAGGTATTTTCAA
246 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGG-----T-AA
**
82393425 TTTTGTTTTTCAATTTCTGTTCGTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
301 -------TTTCAATTTCTGTT-GTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
82393489 GACACGTTGAGGTAATTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTG
358 GACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTT-
*
82393553 AGCCTCAAG-ACACGTTGAGGTAA
422 AGCCTC-AGTACACGCTGAGGT-A
** *
82393576 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
1 TTTCAATTTCTGTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTT
* * *
82393641 GAGGT-ATTTTCAATTTCTGTT-TTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
65 GAGGTAATTTT-AATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCT
* * * * ** **
82393703 CGGTTCACATGCT-AGGTATTCTCAATTTCTGTCTTTCAA-AAAAAAAAATCAACTCATATTGCG
129 CAGCTCACATGCTGAGGTATTTTCAATTTCTGTTTTTCAATTCATCAAAATCAACTCATATTGCG
* *
82393766 AGAGGTGAATTGAGCTTCAG
194 AGAGGTGAGTTGAGCCTCAG
82393786 ATCACACACT
Statistics
Matches: 615, Mismatches: 38, Indels: 58
0.86 0.05 0.08
Matches are distributed among these distances:
453 2 0.00
454 13 0.02
455 1 0.00
459 262 0.43
460 2 0.00
461 2 0.00
462 37 0.06
464 10 0.02
466 24 0.04
467 44 0.07
468 11 0.02
469 56 0.09
470 2 0.00
473 4 0.01
474 21 0.03
475 33 0.05
476 6 0.01
477 79 0.13
478 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (443 bp):
TTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTG
AGGTAATTTTAATTTCTGTTCATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCA
GCTCACATGCTGAGGTATTTTCAATTTCTGTTTTTCAATTCATCAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCAGGACACGTTGAGGTAATTTCAATTTCTGTTATCAAAAATCAACTCATA
TTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAATTCA
ACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCA
AAAAATCAACTCATATTGCGAGAGGTGAGTTAGCCTCAGTACACGCTGAGGTA
Found at i:82394177 original size:44 final size:45
Alignment explanation
Indices: 82394094--82394192 Score: 103
Period size: 44 Copynumber: 2.2 Consensus size: 45
82394084 TGAAGCTGTT
* *
82394094 AATCTTATAT-TTCTGAAGTCACAGTAAAGCAGATCGAAGCTACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGCAGATCGAAGCCACA
* * ** *
82394138 AATCTTATATCCT-TGAAGTTACATTAAAGTGGATTGAAGCCACA
1 AATCTTATATCCTCTGAAGTCACAGTAAAGCAGATCGAAGCCACA
* *
82394182 AAGCATATATC
1 AATCTTATATC
82394193 AGAAGATGCA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 44 0.98
45 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (45 bp):
AATCTTATATCCTCTGAAGTCACAGTAAAGCAGATCGAAGCCACA
Found at i:82394543 original size:35 final size:35
Alignment explanation
Indices: 82394504--82394574 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
82394494 CACTTGCCTC
*
82394504 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
*
82394539 TTCCCATTCTCCCATGCTGTCTGCCACCAACACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
82394574 T
1 T
82394575 CACACACTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.18, C:0.46, G:0.10, T:0.25
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAACACCA
Found at i:82394979 original size:12 final size:11
Alignment explanation
Indices: 82394959--82394998 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
82394949 TAAAACATAA
82394959 AAAAAATATAC
1 AAAAAATATAC
82394970 AAAAAGATATAC
1 AAAAA-ATATAC
82394982 AAAAAATATAC
1 AAAAAATATAC
82394993 AAAAAA
1 AAAAAA
82394999 AAAAAATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.15
Consensus pattern (11 bp):
AAAAAATATAC
Found at i:82394999 original size:12 final size:12
Alignment explanation
Indices: 82394958--82394999 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
82394948 TTAAAACATA
82394958 AAAAAAATATAC
1 AAAAAAATATAC
*
82394970 AAAAAGATATAC
1 AAAAAAATATAC
82394982 -AAAAAATATAC
1 AAAAAAATATAC
82394993 AAAAAAA
1 AAAAAAA
82395000 AAAAATTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAAAAATATAC
Found at i:82395116 original size:11 final size:11
Alignment explanation
Indices: 82395083--82395117 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
82395073 CGGATTCCCC
82395083 TCCCT-TCTCT
1 TCCCTCTCTCT
82395093 CTCCCTCTCTCT
1 -TCCCTCTCTCT
82395105 TCCCTCTCTCT
1 TCCCTCTCTCT
82395116 TC
1 TC
82395118 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
TCCCTCTCTCT
Found at i:82395708 original size:2 final size:2
Alignment explanation
Indices: 82395636--82395692 Score: 57
Period size: 2 Copynumber: 30.0 Consensus size: 2
82395626 ATCATTTCTA
* * *
82395636 AT AT GT AT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
82395676 AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT
82395693 GCCATTAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
1 3 0.07
2 43 0.93
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (2 bp):
AT
Found at i:82396049 original size:19 final size:19
Alignment explanation
Indices: 82395965--82396053 Score: 72
Period size: 21 Copynumber: 4.3 Consensus size: 19
82395955 CAATATTTTC
*
82395965 TTTTATTGTAGATATTATTA
1 TTTTA-TGTACATATTATTA
82395985 TTATTAT-TACATACTTTTATTA
1 TT-TTATGTACATA---TTATTA
* *
82396007 TATATATATACATATATATGTA
1 T-TTTATGTACATAT-TAT-TA
82396029 TTTTATGTACATATTATTA
1 TTTTATGTACATATTATTA
82396048 TTTTAT
1 TTTTAT
82396054 ATTATTATTA
Statistics
Matches: 57, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
19 13 0.23
20 7 0.12
21 17 0.30
22 13 0.23
23 7 0.12
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:82397436 original size:19 final size:18
Alignment explanation
Indices: 82397407--82397445 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
82397397 GTATATATTT
82397407 TAAATTTATTTAGG-TAGA
1 TAAATTTATTT-GGATAGA
82397425 TAAATCTTATTTGGATAGA
1 TAAAT-TTATTTGGATAGA
82397444 TA
1 TA
82397446 CGTTTTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (18 bp):
TAAATTTATTTGGATAGA
Found at i:82399542 original size:16 final size:17
Alignment explanation
Indices: 82399521--82399552 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
82399511 ATATTTAGTT
82399521 ATATAATAAAT-TATTA
1 ATATAATAAATATATTA
82399537 ATATAATAAATATATT
1 ATATAATAAATATATT
82399553 TTATTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATAATAAATATATTA
Found at i:82399557 original size:22 final size:21
Alignment explanation
Indices: 82399531--82399574 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
82399521 ATATAATAAA
82399531 TTATTAATATAATAAATATATT
1 TTATTAATATAATAAAT-TATT
* *
82399553 TTATTATTTTAATAAATTATT
1 TTATTAATATAATAAATTATT
82399574 T
1 T
82399575 AATATTTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATTAATATAATAAATTATT
Found at i:82399605 original size:13 final size:14
Alignment explanation
Indices: 82399589--82399630 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
82399579 TTTCAATTTT
82399589 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
82399602 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
82399617 ATTTTAAATAATAT
1 ATTTT-AATAATAT
82399631 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:82399615 original size:16 final size:16
Alignment explanation
Indices: 82399593--82399629 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
82399583 AATTTTATTT
82399593 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
82399610 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
82399625 TAATA
1 TAATA
82399630 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:82400199 original size:14 final size:13
Alignment explanation
Indices: 82400180--82400218 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
82400170 CCAGAAAAAT
82400180 AAATCATTTTCCAG
1 AAATCATTTTCC-G
*
82400194 AAATCATTTTTCG
1 AAATCATTTTCCG
82400207 AAAGTCATTTTC
1 AAA-TCATTTTC
82400219 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (13 bp):
AAATCATTTTCCG
Found at i:82400569 original size:59 final size:59
Alignment explanation
Indices: 82400454--82400571 Score: 134
Period size: 59 Copynumber: 2.0 Consensus size: 59
82400444 TGTTAATAGG
* ****
82400454 ATTATTATTAAATATAATTTAATAAAAATAAAAAATAATTTAATAATATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAAAAAATAATATAATAATAAAAATAATATA
*
82400513 ATTATTATTAAAATATGAA-TTAATAAAAAT-AAAAAT-ATATAATATTAGAAAATAATATA
1 ATTATTATT-AAATAT-AATTTAATAAAAATAAAAAATAATATAATAATA-AAAATAATATA
82400572 TAACCTACTT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
58 9 0.18
59 22 0.44
60 17 0.34
61 2 0.04
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAAAAAATAATATAATAATAAAAATAATATA
Found at i:82402373 original size:40 final size:40
Alignment explanation
Indices: 82402314--82402521 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
82402304 CAATTGAATG
* * * *
82402314 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82402354 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * * **
82402394 ACATCCGGGCTAAGACCCGAAGGTATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
82402434 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
82402474 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
82402514 ATATCCGG
1 ATATCCGG
82402522 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:82402452 original size:80 final size:80
Alignment explanation
Indices: 82402316--82402521 Score: 218
Period size: 80 Copynumber: 2.6 Consensus size: 80
82402306 ATTGAATGAT
* * ** * ** * *
82402316 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGG-CAT
*
82402380 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
82402396 ATCCGGGCTAAGACCCGAAGGTATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCATT
** *
82402461 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
82402476 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
82402522 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 2 0.02
80 101 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:82412188 original size:46 final size:45
Alignment explanation
Indices: 82412077--82412200 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 45
82412067 ACATTATGAG
* * * *
82412077 AGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCATTAAGACGA
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCAACGACATGAAGACGA
* *
82412124 AGGCTAGTGTAAGACATGTCTGGGACATGCAACGACCTCGAA-ACGTA
1 A-GCCAGTGTAAGACATGTCTGGGACATGCAACGACAT-GAAGACG-A
*
82412171 AGCCAGTGTAAGACATGTCTAGGACATGCA
1 AGCCAGTGTAAGACATGTCTGGGACATGCA
82412201 TCGGATACGA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
46 37 0.56
47 18 0.27
48 11 0.17
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCAACGACATGAAGACGA
Found at i:82412260 original size:47 final size:47
Alignment explanation
Indices: 82412076--82412298 Score: 142
Period size: 47 Copynumber: 4.8 Consensus size: 47
82412066 CACATTATGA
** *
82412076 GAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCATTAAGACGA-A-
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-G-A-TACGA-GATAT
* * * * **
82412125 G-GCTAGTGTAAGA-CATGTCTGGGACAT-GCAACGACCT-CGAAACGT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA--TACGAGATAT
*
82412170 AAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGATACGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GATACGAGAT-AT
* * * * *
82412217 -TGTCAGTGTAAGACCATGTGTGGGACATGGCATCGACT-TGAGATAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA-TACGAGATAT
* *
82412263 GAGCCAGTATAAGACCGTGTCTAGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
82412299 GCACCTTACC
Statistics
Matches: 138, Mismatches: 25, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 3 0.02
46 49 0.36
47 64 0.46
48 17 0.12
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGATACGAGATAT
Found at i:82414418 original size:21 final size:22
Alignment explanation
Indices: 82414379--82414420 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
82414369 CTCTTTAATG
*
82414379 TTTTTAAGGATTGTATTAATTA
1 TTTTTAAGGATGGTATTAATTA
*
82414401 TTTTTAA-GATGGTTTTAATT
1 TTTTTAAGGATGGTATTAATT
82414421 TAATTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (22 bp):
TTTTTAAGGATGGTATTAATTA
Found at i:82414427 original size:22 final size:22
Alignment explanation
Indices: 82414380--82414427 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
82414370 TCTTTAATGT
* *
82414380 TTTTAAGGATTGTATTAATTAT
1 TTTTAAGGATGGTATTAATTAA
*
82414402 TTTTAA-GATGGTTTTAATTTAA
1 TTTTAAGGATGGTATTAA-TTAA
82414424 TTTT
1 TTTT
82414428 TTTAGGAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.58
Consensus pattern (22 bp):
TTTTAAGGATGGTATTAATTAA
Found at i:82416910 original size:14 final size:14
Alignment explanation
Indices: 82416891--82416919 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
82416881 CGGATTAATT
82416891 GTTTAGAATAGGAA
1 GTTTAGAATAGGAA
82416905 GTTTAGAATAGGAA
1 GTTTAGAATAGGAA
82416919 G
1 G
82416920 AATCTAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.28
Consensus pattern (14 bp):
GTTTAGAATAGGAA
Found at i:82421753 original size:24 final size:24
Alignment explanation
Indices: 82421722--82421770 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
82421712 AAATATTGAT
82421722 TTTACTAGATTATCAACTCTATAA
1 TTTACTAGATTATCAACTCTATAA
*
82421746 TTTACTAGATTATTAACTCTATAA
1 TTTACTAGATTATCAACTCTATAA
82421770 T
1 T
82421771 GTGATGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.14, G:0.04, T:0.45
Consensus pattern (24 bp):
TTTACTAGATTATCAACTCTATAA
Found at i:82432971 original size:112 final size:115
Alignment explanation
Indices: 82432855--82433065 Score: 259
Period size: 115 Copynumber: 1.9 Consensus size: 115
82432845 ATATCAATTT
* * * * *
82432855 TTTTTCGTATTTAAGGGGAA-G-GATATTTT-TTGTTGTGTTTTTTTAGTTTTAGGTTTGTATTG
1 TTTTTCGTATTTAAGGGAAATGTGATATTTTATTGTTGTGTTTTATTAGCTTTAAGTTAGTATT-
82432917 AAAGTATAATTAA-TTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAG
65 AAAGTATAATTAATTTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAG
*** * * *
82432967 TTTTTCGTATTTACTTGAAATGTTATTTTTTATTGTTGTGTTTTATTAGCTTTAAGTTAGTATTT
1 TTTTTCGTATTTAAGGGAAATGTGATATTTTATTGTTGTGTTTTATTAGCTTTAAGTTAGTATTA
* * *
82433032 AGGTTTAATTAATTTTTTTTTATTAATGTTTTTG
66 AAGTATAATTAATTTTGTTTTATTAATGTTTTTG
82433066 AAGAATGTTA
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
112 16 0.20
113 1 0.01
114 16 0.20
115 48 0.59
ACGTcount: A:0.22, C:0.02, G:0.17, T:0.59
Consensus pattern (115 bp):
TTTTTCGTATTTAAGGGAAATGTGATATTTTATTGTTGTGTTTTATTAGCTTTAAGTTAGTATTA
AAGTATAATTAATTTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAG
Found at i:82433265 original size:137 final size:137
Alignment explanation
Indices: 82433088--82433524 Score: 662
Period size: 137 Copynumber: 3.1 Consensus size: 137
82433078 TTCCACAATA
*
82433088 TTTTTGTATTTAAGGTATGAACATATTTTTTTATAATTGGTTATTTGAGTTTATTTAATATTTGG
1 TTTTTGTATTTAAGGTATGAACATA-TTTTTTATAATTGGTTATTTGAGTTTATTTAATGTTTGG
* *
82433153 GGAACTT-TGTTTATTAATATAATTGATATGTTCTATTAATTTATTTATTATTTCGTATTCAAGT
65 GGAA-TTGTGTTTATTAATATAATTGATATGTTATATTAATTTATTTATTATTTCGTATTTAAGT
82433217 TATATTGAT
129 TATATTGAT
* * * *
82433226 TTTTCT-TATTTAAGATATGAGCGTATTTTTTATAATTGGTTATTTGAGTTTATTTAATGTTTGA
1 TTTT-TGTATTTAAGGTATGAACATATTTTTTATAATTGGTTATTTGAGTTTATTTAATGTTTGG
* *
82433290 GGAATTGTATTTATTAATATAATTGATATGTTATACTAATTTATTTATTATTTCGTATTTAAGTT
65 GGAATTGTGTTTATTAATATAATTGATATGTTATATTAATTTATTTATTATTTCGTATTTAAGTT
*
82433355 ATATCGAT
130 ATATTGAT
* * *
82433363 TTTTTGTATTTAAGGTATGAACATATATTTTATAATTGGTTATTTGAGTTTTTTTAATGTTTAGG
1 TTTTTGTATTTAAGGTATGAACATATTTTTTATAATTGGTTATTTGAGTTTATTTAATGTTTGGG
82433428 GAATTGTGTTTATTAATATAATTGATATGTTATATTAATTTATTAATTTATTATTTCGTATTTAA
66 GAATTGTGTTTATTAATATAATTGATATGTTATATTAA--T-TT-ATTTATTATTTCGTATTTAA
*
82433493 GTTATATTAGTT
127 GTTATATT-GAT
82433505 TTTTTGTATTTAAGGTATGA
1 TTTTTGTATTTAAGGTATGA
82433525 GTACACTTAT
Statistics
Matches: 270, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
136 3 0.01
137 194 0.72
138 20 0.07
139 2 0.01
140 2 0.01
141 27 0.10
142 22 0.08
ACGTcount: A:0.29, C:0.03, G:0.14, T:0.55
Consensus pattern (137 bp):
TTTTTGTATTTAAGGTATGAACATATTTTTTATAATTGGTTATTTGAGTTTATTTAATGTTTGGG
GAATTGTGTTTATTAATATAATTGATATGTTATATTAATTTATTTATTATTTCGTATTTAAGTTA
TATTGAT
Found at i:82433471 original size:65 final size:65
Alignment explanation
Indices: 82433265--82433471 Score: 140
Period size: 65 Copynumber: 3.1 Consensus size: 65
82433255 TTATAATTGG
* *
82433265 TTATTTGAGTTTATTTAATGTTT-GAGGAATTGTATTTATTAATATAATTGATATGTTATACTAA
1 TTATTTGAGTTTTTTTAATGTTTAG-GGAATTGTATTTATTAATATAATTGATATGTTATATTAA
82433329 T
65 T
* ** * *
82433330 TTATTT-ATTATTTCGTATTTAA-GTTATATCG-ATT-TTTTGTATTTAAGGTATGAACAT-ATA
1 TTATTTGA--GTTT--T-TTTAATGTT-TAGGGAATTGTATT-TA-TTAA--TAT-AA-TTGATA
* **
82433390 TTTTATAATT-GG
54 TGTTAT-ATTAAT
*
82433402 TTATTTGAGTTTTTTTAATGTTTAGGGAATTGTGTTTATTAATATAATTGATATGTTATATTAAT
1 TTATTTGAGTTTTTTTAATGTTTAGGGAATTGTATTTATTAATATAATTGATATGTTATATTAAT
82433467 TTATT
1 TTATT
82433472 AATTTATTAT
Statistics
Matches: 104, Mismatches: 18, Indels: 40
0.64 0.11 0.25
Matches are distributed among these distances:
64 5 0.05
65 21 0.20
66 6 0.06
67 3 0.03
68 20 0.19
69 20 0.19
70 3 0.03
71 6 0.06
72 16 0.15
73 4 0.04
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (65 bp):
TTATTTGAGTTTTTTTAATGTTTAGGGAATTGTATTTATTAATATAATTGATATGTTATATTAAT
Found at i:82436803 original size:42 final size:42
Alignment explanation
Indices: 82436740--82436866 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
82436730 CTTCGTTTTC
** * *
82436740 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
82436783 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
82436824 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
82436865 TC
1 TC
82436867 TCACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:82436910 original size:88 final size:89
Alignment explanation
Indices: 82436783--82436950 Score: 214
Period size: 88 Copynumber: 1.9 Consensus size: 89
82436773 CTTCACATAA
* * *
82436783 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAT-CGATGCCATAGCCCAGCTATGG
1 TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
82436847 TCTTACACGAATCACATATCTCAC
66 TCTTACACGAATCACATATCTCAC
* * *
82436871 TGATGCCATATCCCAGATATGGTCTTATACAGTA-GCATATATCACACCGATGCCATATCCCAGA
1 TGATGCCATAGCCCAGATATGGTCTTACACA-TATGCATATAT----CCGATGCCATAGCCCAGA
*
82436935 TATGGTCTTATACGAA
61 TATGGTCTTACACGAA
82436951 AATCACTTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
88 35 0.52
89 2 0.03
93 30 0.45
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (89 bp):
TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCGATGCCATAGCCCAGATATGG
TCTTACACGAATCACATATCTCAC
Found at i:82436928 original size:47 final size:46
Alignment explanation
Indices: 82436825--82436950 Score: 171
Period size: 47 Copynumber: 2.7 Consensus size: 46
82436815 ATTCATATAT
* * * * *
82436825 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
82436871 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
82436918 CGATGCCATATCCCAGATATGGTCTTATACGAA
1 CGATGCCATATCCCAGATATGGTCTTATACGAA
82436951 AATCACTTGT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
46 28 0.41
47 41 0.59
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:82437004 original size:31 final size:31
Alignment explanation
Indices: 82436969--82437148 Score: 265
Period size: 31 Copynumber: 5.8 Consensus size: 31
82436959 GTCATCACTT
82436969 GTAGCCGAAGCTACCACTATTT-ACTGATCAG
1 GTAGCCGAAGCTACCACT-TTTCACTGATCAG
* *
82437000 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
82437031 GTAGCCGGAGCTATCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
82437062 GTAGCCGGAA-CTACCACTTTTCACTAATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
82437093 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
82437124 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
82437149 TGGCATTTGT
Statistics
Matches: 136, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
30 6 0.04
31 128 0.94
32 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:82437287 original size:50 final size:51
Alignment explanation
Indices: 82437124--82437303 Score: 274
Period size: 51 Copynumber: 3.5 Consensus size: 51
82437114 CACTGATCAG
* * *
82437124 GTAGCTGAAGCTACCACTTTTCACTTGGCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
*
82437175 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
* *
82437226 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTACCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
*
82437276 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTACCACTTATCACTTGT
82437304 TGCCATGGTC
Statistics
Matches: 122, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
50 45 0.37
51 77 0.63
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTACCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:82442882 original size:93 final size:93
Alignment explanation
Indices: 82442770--82442941 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82442760 CGCCCATAAG
* *
82442770 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82442835 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
82442863 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82442928 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82442942 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82442938 original size:46 final size:46
Alignment explanation
Indices: 82442763--82442938 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82442753 TGTAACCCGC
* * *
82442763 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
82442809 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
82442859 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82442902 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82442939 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82450428 original size:93 final size:93
Alignment explanation
Indices: 82450316--82450487 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82450306 CGCCCATAAG
* *
82450316 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82450381 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
82450409 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82450474 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82450488 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82450484 original size:46 final size:46
Alignment explanation
Indices: 82450309--82450484 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82450299 TGTAACCCGC
* * *
82450309 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
82450355 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
82450405 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82450448 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82450485 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82457939 original size:93 final size:93
Alignment explanation
Indices: 82457827--82457998 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82457817 CGCCCATAAG
* *
82457827 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82457892 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
82457920 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
82457985 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82457999 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82457995 original size:46 final size:46
Alignment explanation
Indices: 82457820--82457995 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82457810 TGTAACCCGC
* * *
82457820 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
82457866 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
82457916 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82457959 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82457996 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82462471 original size:18 final size:18
Alignment explanation
Indices: 82462445--82462485 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82462435 GATCACGAAG
*
82462445 CATTATCGAACAAAAACA
1 CATTTTCGAACAAAAACA
**
82462463 CATTTTCGAACAACCACA
1 CATTTTCGAACAAAAACA
82462481 CATTT
1 CATTT
82462486 ATACAAGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.27, G:0.05, T:0.24
Consensus pattern (18 bp):
CATTTTCGAACAAAAACA
Found at i:82462777 original size:19 final size:21
Alignment explanation
Indices: 82462740--82462783 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
82462730 TTACCGAATG
* *
82462740 GTCATATATATATATATATAT
1 GTCATATATATATAAATATAA
82462761 GTCATATAT-TA-AAATATAA
1 GTCATATATATATAAATATAA
82462780 GTCA
1 GTCA
82462784 ATAATAAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 2 0.10
21 9 0.43
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (21 bp):
GTCATATATATATAAATATAA
Found at i:82465111 original size:18 final size:18
Alignment explanation
Indices: 82465090--82465124 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82465080 TATGTTTTAT
82465090 CATTTCATAAATATAACA
1 CATTTCATAAATATAACA
* *
82465108 CATTTTATAATTATAAC
1 CATTTCATAAATATAAC
82465125 CTTAATAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (18 bp):
CATTTCATAAATATAACA
Found at i:82469216 original size:35 final size:35
Alignment explanation
Indices: 82469034--82469198 Score: 208
Period size: 35 Copynumber: 4.7 Consensus size: 35
82469024 TCCTCATTGA
** * *
82469034 AATACCATACCTAAATTTTACAACTCGGTATGGGA-
1 AATACCATACCTACGTTTCACAACTCAGTAT-GGAT
* * * **
82469069 AATGCTATTCCTACGTTTCTTAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
82469104 AATACCATACCTACGTTTCACAACTCAGTAT-GATT
1 AATACCATACCTACGTTTCACAACTCAGTATGGA-T
82469139 AATACCATACCTACGTTTCACAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
*
82469174 GATACCATACCTACGTTTCACAACT
1 AATACCATACCTACGTTTCACAACT
82469199 TTGCAATGGA
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
34 5 0.04
35 105 0.94
36 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:82470456 original size:17 final size:18
Alignment explanation
Indices: 82470411--82470456 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
82470401 TTGACCTAAT
*
82470411 AAATTCTTTTAATTCACC
1 AAATTCTTCTAATTCACC
*
82470429 AAATTC-ACTAATTCA-C
1 AAATTCTTCTAATTCACC
82470445 AAATTCTTCTAA
1 AAATTCTTCTAA
82470457 ATTCTTACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 7 0.29
17 11 0.46
18 6 0.25
ACGTcount: A:0.39, C:0.22, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATTCTTCTAATTCACC
Found at i:82473326 original size:43 final size:43
Alignment explanation
Indices: 82473221--82473327 Score: 101
Period size: 43 Copynumber: 2.4 Consensus size: 43
82473211 CTTGGATAAT
*
82473221 CACACATATCATACAATGCCAATGTCCCAGACATGGTCTTACATG
1 CACACATAT-ATA-AATGCCAATGTCCCAGACAAGGTCTTACATG
* * ** *
82473266 TA-ATCATAAATCGATGCCACTGTCCCAGACAAGGTCTTAC-TCG
1 CACA-CATATATAAATGCCAATGTCCCAGACAAGGTCTTACAT-G
*
82473309 CACACATATATATATGCCA
1 CACACATATATAAATGCCA
82473328 TGGTCTTACT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
42 1 0.02
43 39 0.80
44 4 0.08
45 5 0.10
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (43 bp):
CACACATATATAAATGCCAATGTCCCAGACAAGGTCTTACATG
Found at i:82477225 original size:25 final size:25
Alignment explanation
Indices: 82477178--82477225 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
82477168 AATGGTTAAA
*
82477178 ACTCTATATGATGCTATTGTTTATT
1 ACTCTATATGATGCGATTGTTTATT
*
82477203 ACTCTATTTGATG-GATTGATTTA
1 ACTCTATATGATGCGATTG-TTTA
82477226 ATGATTGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (25 bp):
ACTCTATATGATGCGATTGTTTATT
Found at i:82487098 original size:96 final size:96
Alignment explanation
Indices: 82486927--82487116 Score: 299
Period size: 96 Copynumber: 2.0 Consensus size: 96
82486917 CCCAAACTCT
* *
82486927 AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCTTTCAGAACACAAGT
1 AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAAGC
* * * *
82486992 TTTATTAATAGCTTTCTTCATCACTCTCTAA
66 ATTATCAATAGCTTACATCATCACTCTCTAA
* *
82487023 AAAAATTCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAGGC
1 AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAAGC
*
82487088 ATTATCAATAGCTTACATCATCATTCTCT
66 ATTATCAATAGCTTACATCATCACTCTCT
82487117 TCCATTTCAA
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 85 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.26
Consensus pattern (96 bp):
AAAAATCCAAAAATTAGAACTTTACCCTAGACCCAAAACTGAAAACAAGCGTTCAGAACACAAGC
ATTATCAATAGCTTACATCATCACTCTCTAA
Found at i:82494534 original size:40 final size:39
Alignment explanation
Indices: 82494475--82494682 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
82494465 CTGAATACAA
* *
82494475 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
* *
82494515 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
82494555 TCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
*** * *
82494595 CCGGATGAGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGAT-ATAACACTTGCACAAAT-GCCTTCGGGTCTTAGC
* * * * *
82494635 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
82494675 CCGGATAT
1 CCGGATAT
82494683 CATTCAATTG
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 5 0.04
40 129 0.93
41 4 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:82494615 original size:80 final size:80
Alignment explanation
Indices: 82494475--82494681 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
82494465 CTGAATACAA
* * *
82494475 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
82494539 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
82494555 TCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGAGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
82494619 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
82494635 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
82494682 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 4 0.04
80 100 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:82508315 original size:19 final size:19
Alignment explanation
Indices: 82508284--82508340 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 19
82508274 TCTTTTAAAA
82508284 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
82508302 TATAAATATTTAG-ATTTT
1 TATAAATATTTAGAATTTT
* *
82508320 TAAAAATTATTTTGAATTTT
1 TATAAA-TATTTAGAATTTT
82508340 T
1 T
82508341 TTTATAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 17 0.50
19 11 0.32
20 6 0.18
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:82512031 original size:39 final size:39
Alignment explanation
Indices: 82511976--82512101 Score: 164
Period size: 39 Copynumber: 3.2 Consensus size: 39
82511966 TTCAGTGATG
*
82511976 TATATCCGGACTTAAGGTCCGCAGGCTATGTACTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
82512015 TATATCCAGACCTAAGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
82512054 TATAAT-CGGACTTAAGGTCTGCAGGCTACGTGCTGGAAA
1 TAT-ATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
82512093 TATGTCCGG
1 TATATCCGG
82512102 GATAAAGTCC
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 71 0.96
40 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:82512355 original size:2 final size:2
Alignment explanation
Indices: 82512348--82512380 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
82512338 TCAAAGATGA
82512348 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82512381 AATGTGATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:82512769 original size:43 final size:43
Alignment explanation
Indices: 82512721--82512807 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
82512711 TAAGTCTGTT
82512721 TAAATGAATGTTTCAATTTTCGATAAGTCTTAATTGTTTGTGA
1 TAAATGAATGTTTCAATTTTCGATAAGTCTTAATTGTTTGTGA
82512764 TAAATGAATGTTTCAATTTTCGATAAGTCTTAATTGTTTGTGA
1 TAAATGAATGTTTCAATTTTCGATAAGTCTTAATTGTTTGTGA
82512807 T
1 T
82512808 GCTTAAAACT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (43 bp):
TAAATGAATGTTTCAATTTTCGATAAGTCTTAATTGTTTGTGA
Found at i:82520024 original size:2 final size:2
Alignment explanation
Indices: 82520019--82520051 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
82520009 TGAAAGTCGA
82520019 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82520052 TTTTGAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:82520573 original size:39 final size:39
Alignment explanation
Indices: 82520518--82520633 Score: 187
Period size: 39 Copynumber: 3.0 Consensus size: 39
82520508 TTCAGTGATG
82520518 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
82520557 TATATCCGGACCTAAGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
82520596 TATAACCGGACTTAAGGTCTGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
82520634 ATATGTCTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:82520660 original size:78 final size:77
Alignment explanation
Indices: 82520518--82520661 Score: 182
Period size: 78 Copynumber: 1.8 Consensus size: 77
82520508 TTCAGTGATG
* * * * *
82520518 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACCTAAGGTCCGCAGGC
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGA-CTAAAGTCCACAGGC
82520583 TATGTGCTAGAAT
65 TATGTGCTAGAAT
* * *
82520596 TATAACCGGACTTAAGGTCTGCAGGCTACGTGCTGGAAATATGTCTGGGA-TAAAGTCCCACAGG
1 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATC-CGGACTAAAGT-CCACAGG
82520660 CT
64 CT
82520662 TCGAGCTGGT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
77 5 0.09
78 48 0.86
79 3 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (77 bp):
TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTAAAGTCCACAGGCT
ATGTGCTAGAAT
Found at i:82520897 original size:2 final size:2
Alignment explanation
Indices: 82520890--82520930 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
82520880 TCAAAGATGA
*
82520890 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82520931 AATGTGATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:82522951 original size:22 final size:24
Alignment explanation
Indices: 82522926--82522982 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
82522916 GATACTTTTC
82522926 TTTTTTTTTCTTTC-T-TCCTAAA
1 TTTTTTTTTCTTTCTTCTCCTAAA
*
82522948 TTTTTTTGTTC-TTCTTCTCCTATA
1 TTTTTTT-TTCTTTCTTCTCCTAAA
*
82522972 TTTTGTTTTCT
1 TTTTTTTTTCT
82522983 CAATCAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 10 0.34
23 7 0.24
24 12 0.41
ACGTcount: A:0.09, C:0.18, G:0.04, T:0.70
Consensus pattern (24 bp):
TTTTTTTTTCTTTCTTCTCCTAAA
Found at i:82525820 original size:21 final size:21
Alignment explanation
Indices: 82525781--82525820 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
82525771 GACAAAAAAT
*
82525781 ATGTTATTTTTTGTTTTTTTA
1 ATGTTATTTCTTGTTTTTTTA
*
82525802 ATGTT-TTTCTTGTTGTTTT
1 ATGTTATTTCTTGTTTTTTT
82525821 CTCCCTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.10, C:0.03, G:0.12, T:0.75
Consensus pattern (21 bp):
ATGTTATTTCTTGTTTTTTTA
Found at i:82526031 original size:11 final size:11
Alignment explanation
Indices: 82526015--82526044 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
82526005 TATATATATT
82526015 TAAAAATTATA
1 TAAAAATTATA
*
82526026 TAAAAATAATA
1 TAAAAATTATA
82526037 TAAAAATT
1 TAAAAATT
82526045 TAATACTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:82527100 original size:48 final size:46
Alignment explanation
Indices: 82527037--82527149 Score: 145
Period size: 48 Copynumber: 2.4 Consensus size: 46
82527027 GCTTTTTTTT
* *
82527037 ACAATGCACTGAAAATAATGCACTAAACCTATCTCAATGTTCGAAA
1 ACAATGCACTGAAAATAATACACTAAACCTATCTAAATGTTCGAAA
* * * *
82527083 ATAATGCACTAGAAAAATAATACATTGAAGCTATCTAAATGTTCGAAA
1 ACAATGCACT-G-AAAATAATACACTAAACCTATCTAAATGTTCGAAA
*
82527131 ACAATGCACTGTAAATAAT
1 ACAATGCACTGAAAATAAT
82527150 GATTAAAACT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
46 16 0.28
47 2 0.04
48 39 0.68
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.26
Consensus pattern (46 bp):
ACAATGCACTGAAAATAATACACTAAACCTATCTAAATGTTCGAAA
Found at i:82529269 original size:33 final size:33
Alignment explanation
Indices: 82529232--82529372 Score: 99
Period size: 33 Copynumber: 4.2 Consensus size: 33
82529222 GCCCAATCAC
* *
82529232 GGTCTTACATTC-GTTGTGCCATAACCCAGTTAT
1 GGTCTTACATTCAG-AGTGCCATAACCCAGCTAT
*
82529265 GGTCTTATCA-TCAGAGTGCCATAGCCCAGCTAT
1 GGTCTTA-CATTCAGAGTGCCATAACCCAGCTAT
* * * *** * *
82529298 GGTCTTACATGTAAACATTGCCATGGTCCAACCAT
1 GGTCTTACAT-T-CAGAGTGCCATAACCCAGCTAT
* *
82529333 GGTCTTACATTC-GTAGTGCCACAACCCAGTTAT
1 GGTCTTACATTCAG-AGTGCCATAACCCAGCTAT
82529366 GGTCTTA
1 GGTCTTA
82529373 TCCGTCAATT
Statistics
Matches: 82, Mismatches: 20, Indels: 12
0.72 0.18 0.11
Matches are distributed among these distances:
32 2 0.02
33 50 0.61
34 5 0.06
35 25 0.30
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (33 bp):
GGTCTTACATTCAGAGTGCCATAACCCAGCTAT
Found at i:82532401 original size:89 final size:90
Alignment explanation
Indices: 82532195--82532406 Score: 218
Period size: 91 Copynumber: 2.4 Consensus size: 90
82532185 GCCACCTTAG
* * * * *
82532195 TTTGTGGATAAACCACCAGTG-TTACAGATTAATATGCTACCAGTAGTTGTGAGTACATAACGAG
1 TTTGTGGATAAACCACAAGTGTTTGCAGATTAATATGCTACCAGTAGTCGTGAATACAAAACGAG
*
82532259 TTTACAGATAATAGCTGTCAGTACAA
66 TTTACAGAGAATAGCTGTCAGTA-AA
* * * * * *
82532285 GTTATGGATAAACCACAAGT-TCTTGCAGGTTAATATGCTATCAGTGGTCGTGAATACAAAATG-
1 TTTGTGGATAAACCACAAGTGT-TTGCAGATTAATATGCTACCAGTAGTCGTGAATACAAAACGA
**
82532348 GTTTTGTAGACGAA-AGCTGTCAGT-AA
65 G-TTTACAGA-GAATAGCTGTCAGTAAA
*
82532374 TTTGTGGATAAACCACAAGTGTTTGCAGTTTAA
1 TTTGTGGATAAACCACAAGTGTTTGCAGATTAA
82532407 AATTGCTAGA
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
89 30 0.30
90 19 0.19
91 49 0.49
92 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (90 bp):
TTTGTGGATAAACCACAAGTGTTTGCAGATTAATATGCTACCAGTAGTCGTGAATACAAAACGAG
TTTACAGAGAATAGCTGTCAGTAAA
Found at i:82535204 original size:15 final size:15
Alignment explanation
Indices: 82535184--82535212 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
82535174 GTATTGTTGC
82535184 TTGATAACACGATGA
1 TTGATAACACGATGA
82535199 TTGATAACACGATG
1 TTGATAACACGATG
82535213 TGTGAGGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (15 bp):
TTGATAACACGATGA
Found at i:82537715 original size:19 final size:19
Alignment explanation
Indices: 82537656--82537715 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
82537646 AATCCTTTAA
*
82537656 AAATTAACAAAATACTATT
1 AAATTAACAAATTACTATT
*
82537675 AAGA-TAATC-ACTTACATATT
1 AA-ATTAA-CAAATTAC-TATT
82537695 AAATTAACAAATTACTATT
1 AAATTAACAAATTACTATT
82537714 AA
1 AA
82537716 GATAAGTATC
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (19 bp):
AAATTAACAAATTACTATT
Found at i:82542997 original size:5 final size:5
Alignment explanation
Indices: 82542973--82543072 Score: 55
Period size: 5 Copynumber: 20.0 Consensus size: 5
82542963 TATTTCCAAG
* * * *
82542973 TATA- TATAT TATTTT TATAT TATAT TA-ACA TATAT TATTT TATAT TTTAT
1 TATAT TATAT TA-TAT TATAT TATAT TATA-T TATAT TATAT TATAT TATAT
* * * * *
82543023 TAAAT GT-TAT ATATAT TATAT TATTT TATGT TTTAA TATA- TATAT TATAT
1 TATAT -TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
82543073 ATTAGGATAT
Statistics
Matches: 72, Mismatches: 17, Indels: 13
0.71 0.17 0.13
Matches are distributed among these distances:
4 9 0.12
5 54 0.75
6 9 0.12
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:82543013 original size:25 final size:26
Alignment explanation
Indices: 82542976--82543025 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
82542966 TTCCAAGTAT
82542976 ATATATTATTTTTATATTATATTAAC
1 ATATATTATTTTTATATTATATTAAC
*
82543002 ATATATTA-TTTTATATTTTATTAA
1 ATATATTATTTTTATATTATATTAA
82543026 ATGTTATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (26 bp):
ATATATTATTTTTATATTATATTAAC
Found at i:82543043 original size:36 final size:36
Alignment explanation
Indices: 82542977--82543111 Score: 125
Period size: 36 Copynumber: 3.7 Consensus size: 36
82542967 TCCAAGTATA
* *
82542977 TATATTATTTTTATATTATATTA-ACA-TATATTATTT
1 TATATT-TTATTATATT-TATTATATATTATATTATTT
*
82543013 TATATTTTATTAAATGTTA-TATATATTATATTATTT
1 TATATTTTATTATAT-TTATTATATATTATATTATTT
* * * *
82543049 TATGTTTTAATATATATATTATATATTAGGA-TATTT
1 TATATTTTATTATATTTATTATATATTA-TATTATTT
*
82543085 CATATTTTATTATATATTATTATATAT
1 TATATTTTATTATAT-TTATTATATAT
82543112 AATTTTGAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 11
0.78 0.12 0.11
Matches are distributed among these distances:
34 2 0.02
35 13 0.16
36 55 0.68
37 11 0.14
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.59
Consensus pattern (36 bp):
TATATTTTATTATATTTATTATATATTATATTATTT
Found at i:82543071 original size:7 final size:7
Alignment explanation
Indices: 82542975--82543148 Score: 53
Period size: 7 Copynumber: 26.7 Consensus size: 7
82542965 TTTCCAAGTA
82542975 TATATAT
1 TATATAT
82542982 TAT-T-T
1 TATATAT
82542987 T-TATAT
1 TATATAT
82542993 TATAT-T
1 TATATAT
* *
82542999 AACATA-
1 TATATAT
82543005 TAT-TAT
1 TATATAT
*
82543011 TTTATAT
1 TATATAT
82543018 T-T-TAT
1 TATATAT
* *
82543023 TAAATGT
1 TATATAT
82543030 TATATA-
1 TATATAT
82543036 TATTATAT
1 TA-TATAT
82543044 TAT-T-T
1 TATATAT
* *
82543049 TATGTTT
1 TATATAT
82543056 TA-ATA-
1 TATATAT
82543061 TATATAT
1 TATATAT
82543068 TATATAT
1 TATATAT
*
82543075 TAGGATAT
1 TA-TATAT
82543083 T-TCATAT
1 TAT-ATAT
82543090 T-T-TAT
1 TATATAT
82543095 TATATAT
1 TATATAT
82543102 TAT-TA-
1 TATATAT
82543107 TATATAAT
1 TATAT-AT
* *
82543115 TTTGAAATT
1 TAT-ATA-T
*
82543124 TATAAAT
1 TATATAT
82543131 TAT-TAT
1 TATATAT
*
82543137 TAAATAT
1 TATATAT
82543144 TATAT
1 TATAT
82543149 TTTTATTCAA
Statistics
Matches: 124, Mismatches: 19, Indels: 48
0.65 0.10 0.25
Matches are distributed among these distances:
4 1 0.01
5 22 0.18
6 27 0.22
7 57 0.46
8 13 0.10
9 4 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (7 bp):
TATATAT
Found at i:82543221 original size:32 final size:28
Alignment explanation
Indices: 82543172--82543260 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 28
82543162 TTTAAACCTC
* *
82543172 ATTTTATA-ATCTATATTATTACTTTATT
1 ATTTTATATATATCTATTATTA-TTTATT
*
82543200 CTTTATAATATATATTCTATTA-T-TTTATT
1 ATTT-T-ATATATA-TCTATTATTATTTATT
* *
82543229 ATTTTATATATATCTATTATTATGTATA
1 ATTTTATATATATCTATTATTATTTATT
82543257 ATTT
1 ATTT
82543261 GTAAATTTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
26 7 0.14
27 8 0.16
28 12 0.24
29 10 0.20
30 3 0.06
31 3 0.06
32 6 0.12
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.61
Consensus pattern (28 bp):
ATTTTATATATATCTATTATTATTTATT
Found at i:82543239 original size:29 final size:29
Alignment explanation
Indices: 82543172--82543250 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
82543162 TTTAAACCTC
*
82543172 ATTTTATA-ATCTATATTATTACTTTATT
1 ATTTTATATATATATATTATTACTTTATT
* *
82543200 -CTTTATA-ATATATATTCTATTATTTTATT
1 ATTTTATATATATATA-T-TATTACTTTATT
*
82543229 ATTTTATATATATCTATTATTA
1 ATTTTATATATATATATTATTA
82543251 TGTATAATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
27 12 0.29
28 1 0.02
29 16 0.38
30 7 0.17
31 6 0.14
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTATATATATATATTATTACTTTATT
Found at i:82546698 original size:25 final size:23
Alignment explanation
Indices: 82546646--82546700 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
82546636 TATAAATAGT
82546646 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
82546669 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
82546694 AATAGTG
1 AATAGTG
82546701 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:82546781 original size:22 final size:22
Alignment explanation
Indices: 82546756--82546830 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
82546746 TATGAAATAG
*
82546756 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
82546778 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
82546803 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
82546825 AGATAA
1 ATATAA
82546831 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:82546800 original size:25 final size:24
Alignment explanation
Indices: 82546762--82546824 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
82546752 ATAGATATAA
** *
82546762 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
82546787 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
82546811 AAAATATATACATA
1 AAAA-A-ATACATA
82546825 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:82546876 original size:25 final size:25
Alignment explanation
Indices: 82546848--82546979 Score: 75
Period size: 23 Copynumber: 5.6 Consensus size: 25
82546838 AAAAAAATAT
82546848 ATATATAAATAATATAGTATTAAAG
1 ATATATAAATAATATAGTATTAAAG
* * *
82546873 ATATATACATAAAATAGTA-T-AAT
1 ATATATAAATAATATAGTATTAAAG
** * *
82546896 ATATATATGTAATATAGAATT-TAG
1 ATATATAAATAATATAGTATTAAAG
** *
82546920 A-ATATACCTAATATA-T-TAAAAG
1 ATATATAAATAATATAGTATTAAAG
* *
82546942 AATATATATATATATATAATATTAAA-
1 -ATATATAAATA-ATATAGTATTAAAG
82546968 A-ATAT-AATAATA
1 ATATATAAATAATA
82546980 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 18, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
21 1 0.01
22 5 0.06
23 33 0.40
24 15 0.18
25 23 0.28
26 1 0.01
27 4 0.05
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.37
Consensus pattern (25 bp):
ATATATAAATAATATAGTATTAAAG
Done.