Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 287 of 427
Found at i:82546903 original size:27 final size:25
Alignment explanation
Indices: 82546844--82546903 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
82546834 GTAGAAAAAA
*
82546844 ATATATATATAAATAATATAGTATT
1 ATATATATATAAATAAAATAGTATT
* * * *
82546869 AAAGATATATACATAAAATAGTATA
1 ATATATATATAAATAAAATAGTATT
82546894 ATATATATAT
1 ATATATATAT
82546904 GTAATATAGA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (25 bp):
ATATATATATAAATAAAATAGTATT
Found at i:82546909 original size:48 final size:48
Alignment explanation
Indices: 82546841--82546973 Score: 126
Period size: 48 Copynumber: 2.7 Consensus size: 48
82546831 CATGTAGAAA
82546841 AAAATATATATATAAATAATATAGTATTAAAGATATATACATAAAATAGT
1 AAAATATATATAT--ATAATATAGTATTAAAGATATATACATAAAATAGT
* * * * * * *
82546891 ATAATATATATATGTAATATAGAATT-TAGA-ATATACCTAATATATT
1 AAAATATATATATATAATATAGTATTAAAGATATATACATAAAATAGT
* * *
82546937 AAAAGAATATATATATATATATAATATTAAAAATATA
1 AAAA-TATATATATATA-ATATAGTATTAAAGATATA
82546974 ATAATAACAA
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
46 16 0.25
47 13 0.20
48 19 0.29
49 2 0.03
50 15 0.23
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (48 bp):
AAAATATATATATATAATATAGTATTAAAGATATATACATAAAATAGT
Found at i:82547304 original size:16 final size:16
Alignment explanation
Indices: 82547266--82547304 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
82547256 TTCAAAAAAA
*
82547266 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
82547282 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
82547298 AATAACT
1 AAAAACT
82547305 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:82547506 original size:30 final size:30
Alignment explanation
Indices: 82547467--82547535 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
82547457 TAGGTACAAG
82547467 TGGTGGTGGAGCAAGTGTGGCTAATAGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAATAGAGT
* * * *
82547497 TGTTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAATAGAGT
82547527 TGGTGGTGG
1 TGGTGGTGG
82547536 CAAAGGCTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.17, C:0.06, G:0.46, T:0.30
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAATAGAGT
Found at i:82548425 original size:15 final size:15
Alignment explanation
Indices: 82548405--82548437 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
82548395 TTAATTTTTC
*
82548405 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
82548420 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
82548435 AAA
1 AAA
82548438 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:82548473 original size:88 final size:87
Alignment explanation
Indices: 82548373--82548663 Score: 444
Period size: 88 Copynumber: 3.4 Consensus size: 87
82548363 CCCGAGGCAC
* * * * *
82548373 AACTCATCTCTCGCAATATGAATTAATTTTTCAAAAATATAAATTGAAAAAATAGAAATTGAAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAA
* *
82548438 TACCTCAGCGTATCCTGAGGCT
66 TACCTCAGCATGTCCTGAGGCT
* *
82548460 AAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAAAAAACAGAAATTGAAA
1 -AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAA
*
82548525 ATACCTCAACATGTCCTGAGGCT
65 ATACCTCAGCATGTCCTGAGGCT
82548548 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG---AAACAGAAATTGAAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAA
*
82548610 TACCTTAGCATGTCCTGAGGCT
66 TACCTCAGCATGTCCTGAGGCT
82548632 CAACTCACCTCTCGCAATATGAGTTGATTTTT
1 -AACTCACCTCTCGCAATATGAGTTGATTTTT
82548664 TTGAAAAGCA
Statistics
Matches: 188, Mismatches: 14, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
84 36 0.19
85 31 0.16
87 44 0.23
88 77 0.41
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (87 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTGAAAA
TACCTCAGCATGTCCTGAGGCT
Found at i:82548639 original size:172 final size:175
Alignment explanation
Indices: 82548331--82548663 Score: 474
Period size: 172 Copynumber: 1.9 Consensus size: 175
82548321 ACTTAATTTG
** * * *
82548331 AAAACAGATTTTGAAAATACTTCGACATGTGCCCCGAGGCACAACTCATCTCTCGCAATATGAAT
1 AAAACAGAAATTGAAAATACCTCAACATGT-CCCCGAGGCACAACTCACCTCTCGCAATATGAAT
* *
82548396 TAATTTTTCAAAAATATAAATTGAAAAAATAGAAATTGAAAATACCTCAGCGTATCCTGAGGCTA
65 TAATTTTTCAAAAATATAAATTG--AAAACAGAAATTGAAAATACCTCAGCATATCCTGAGGCTA
82548461 AACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAA
128 AACTCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAA
* * *
82548509 AAAACAGAAATTGAAAATACCTCAACATGT-CCTGAGGC-TAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCAACATGTCCCCGAGGCACAACTCACCTCTCGCAATATGAATT
* * * * *
82548572 GATTTTTGAAAAATATAAATTG-AAACAGAAATTGAAAATACCTTAGCATGTCCTGAGGCTCAAC
66 AATTTTTCAAAAATATAAATTGAAAACAGAAATTGAAAATACCTCAGCATATCCTGAGGCTAAAC
*
82548636 TCACCTCTCGCAATATGAGTTGATTTTT
131 TCACATCTCGCAATATGAGTTGATTTTT
82548664 TTGAAAAGCA
Statistics
Matches: 139, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
172 64 0.46
175 42 0.30
176 7 0.05
178 26 0.19
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (175 bp):
AAAACAGAAATTGAAAATACCTCAACATGTCCCCGAGGCACAACTCACCTCTCGCAATATGAATT
AATTTTTCAAAAATATAAATTGAAAACAGAAATTGAAAATACCTCAGCATATCCTGAGGCTAAAC
TCACATCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTAAA
Found at i:82548665 original size:87 final size:86
Alignment explanation
Indices: 82548184--82548829 Score: 439
Period size: 88 Copynumber: 7.7 Consensus size: 86
82548174 CAGCATGTGA
** * * * * * * *
82548184 TCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAAAATAGACATTAAAATAGA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAACAGA
* *
82548247 AATTGAACATAGCTCAGCACGTG
66 AATTGAAAATACCTCAGCA--TG
* * * * * * *
82548270 AGCC-AAGGCTTAACTCACCTCTCGTAATATGAGTTGGCTTTTTTCTTTG-AAACT-TAATTTGA
1 -TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-G---ATTT-TTTGAAAAATATAAATTG-
** *
82548332 AAACAGATTTTGAAAATACTTC-GACATG
59 AAACAGAAATTGAAAATACCTCAG-CATG
* * * * * *
82548360 TGCCCCGAGGCACAACTCATCTCTCGCAATATGAATT-AATTTTTCAAAAATATAAATTGAAAAA
1 T--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTG---AA
* * *
82548424 ATAGAAATTGAAAATACCTCAGCGTA
61 ACAGAAATTGAAAATACCTCAGCATG
* * *
82548450 TCCTGAGGCTAAACTCACATCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTAAAAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATT---GAAAC
*
82548514 AGAAATTGAAAATACCTCAACATG
63 AGAAATTGAAAATACCTCAGCATG
82548538 TCCTGAGGCT-AACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAACAGA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAACAGA
*
82548601 AATTGAAAATACCTTAGCATG
66 AATTGAAAATACCTCAGCATG
82548622 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT------TGA-AAA--G---CAG
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAT-ATAAATTGAAACAG
* *
82548675 AACTTGAAAAGCACCTCAGCATG
65 AAATTGAAAA-TACCTCAGCATG
* * * * *
82548698 CCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGACAAACAGAAATT------GA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAACAGA
*
82548756 AA-T-----TACCTCAGCGTG
66 AATTGAAAATACCTCAGCATG
* * *
82548771 CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-TGTTTTG-AAAACATAAATTGAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAA
82548830 TTACCTCAGC
Statistics
Matches: 452, Mismatches: 68, Indels: 89
0.74 0.11 0.15
Matches are distributed among these distances:
72 10 0.02
73 50 0.11
75 17 0.04
76 45 0.10
78 1 0.00
79 1 0.00
80 8 0.02
81 4 0.01
84 36 0.08
85 26 0.06
86 9 0.02
87 75 0.17
88 87 0.19
89 1 0.00
90 24 0.05
91 8 0.02
92 50 0.11
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (86 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATATAAATTGAAACAGA
AATTGAAAATACCTCAGCATG
Found at i:82548800 original size:73 final size:73
Alignment explanation
Indices: 82548594--82549114 Score: 748
Period size: 73 Copynumber: 7.1 Consensus size: 73
82548584 ATATAAATTG
* * * *
82548594 AAACAGAAATTGAAAATACCTTAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
82548659 TTTTTTTGA-
66 --TTTTTGAC
* ** * *
82548668 AAAGCAGAACTTGAAAAGCACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGTAATATGAGTT
1 AAA-CAGAAATTG-AAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
82548733 GATTTTTGAC
64 GATTTTTGAC
82548743 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
82548807 TGTTTTGA-
66 T-TTTTGAC
* *
82548815 AAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC-AAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
82548879 TTTTTGAC
66 TTTTTGAC
* *
82548887 AAACAGAAATTGAAATTACATCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
82548951 TGTTTTCAC
66 T-TTTTGAC
*
82548960 AAGCAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
82549025 TTTTTGAC
66 TTTTTGAC
* * * **
82549033 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
82549098 ATTTTGA-
66 TTTTTGAC
*
82549105 AAATAGAAAT
1 AAACAGAAAT
82549115 AAAAACATCA
Statistics
Matches: 408, Mismatches: 30, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
71 17 0.04
72 110 0.27
73 203 0.50
74 19 0.05
75 11 0.03
76 48 0.12
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
AAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAC
Found at i:82548979 original size:217 final size:219
Alignment explanation
Indices: 82548594--82549114 Score: 764
Period size: 217 Copynumber: 2.4 Consensus size: 219
82548584 ATATAAATTG
* * *
82548594 AAACAGAAATTGAAAATACCTTAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
82548659 TTTTTTTGAAAAGCAGAACTTGAAAAGCACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGTA
66 --TTTTTGAAAA-CAGAAATTGAAAAGCACATCAGCATGACCTGAGGCTCAACTCACCTCTCGCA
*
82548724 ATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCAC
128 ATATGAGTTGATTTTTCACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCAC
82548789 CTCTCGCAATATGAGTTG-TGTTTTGA-
193 CTCTCGCAATATGAGTTGAT-TTTTGAC
* * *
82548815 AAACATAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTC-AAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
** *
82548879 TTTTTGACAAACAGAAATTG-AAATTACATCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
66 TTTTTGA-AAACAGAAATTGAAAAGCACATCAGCATGACCTGAGGCTCAACTCACCTCTCGCAAT
*
82548943 ATGAGTTG-TGTTTTCACAAGCAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACC
130 ATGAGTTGAT-TTTTCACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACC
82549007 TCTCGCAATATGAGTTGATTTTTGAC
194 TCTCGCAATATGAGTTGATTTTTGAC
* * **
82549033 AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
82549098 ATTTTGAAAATAGAAAT
66 TTTTTGAAAACAGAAAT
82549115 AAAAACATCA
Statistics
Matches: 271, Mismatches: 24, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
216 1 0.00
217 121 0.45
218 70 0.26
219 21 0.08
220 12 0.04
221 46 0.17
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (219 bp):
AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAACAGAAATTGAAAAGCACATCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTCACAAACAGAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTGAC
Found at i:82561109 original size:25 final size:23
Alignment explanation
Indices: 82561057--82561111 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
82561047 TATAAATAGT
82561057 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
82561080 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
82561105 AATAGTG
1 AATAGTG
82561112 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:82561192 original size:22 final size:22
Alignment explanation
Indices: 82561167--82561241 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
82561157 TATGAAATAG
*
82561167 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
82561189 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
82561214 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
82561236 AGATAA
1 ATATAA
82561242 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:82561211 original size:25 final size:24
Alignment explanation
Indices: 82561173--82561235 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
82561163 ATAGATATAA
** *
82561173 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
82561198 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
82561222 AAAATATATACATA
1 AAAA-A-ATACATA
82561236 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:82561898 original size:18 final size:18
Alignment explanation
Indices: 82561875--82561928 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
82561865 ACAAGTGGTG
82561875 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
82561893 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
82561905 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
82561923 GTGGAG
1 GTGGAG
82561929 TTGTTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:82561911 original size:30 final size:30
Alignment explanation
Indices: 82561870--82561968 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
82561860 TAGGTACAAG
*
82561870 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
*
82561900 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
82561930 TGTTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
82561960 TGGTAGTGG
1 TGGTAGTGG
82561969 CAAAGGCTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.06, G:0.47, T:0.28
Consensus pattern (30 bp):
TGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:82561958 original size:18 final size:18
Alignment explanation
Indices: 82561903--82561958 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
82561893 GTGGAGTAGG
*
82561903 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAATTGTGGC
82561921 TAGTGGAG---TTGT---
1 TAGTGGAGCAATTGTGGC
*
82561933 TGGTGGAGCAATTGTGGC
1 TAGTGGAGCAATTGTGGC
82561951 TAGTGGAG
1 TAGTGGAG
82561959 TTGGTAGTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 12
0.66 0.07 0.27
Matches are distributed among these distances:
12 7 0.24
15 7 0.24
18 15 0.52
ACGTcount: A:0.20, C:0.07, G:0.45, T:0.29
Consensus pattern (18 bp):
TAGTGGAGCAATTGTGGC
Found at i:82564070 original size:56 final size:56
Alignment explanation
Indices: 82563978--82564129 Score: 191
Period size: 56 Copynumber: 2.7 Consensus size: 56
82563968 GAATATGTGG
*
82563978 CATCGATATGTGACTT-TGATATATGTGTGC-ACGTAAGACCACGTTTAATACGTTGA
1 CATCGATATGTGA-TTCTGATATATGTGTGCGA-GTAAGACCACGTTTAATACATTGA
* * * *
82564034 CATTGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTCATACATTGG
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGA
* * * *
82564090 CATCGATATGTGATTCTGATTTGTGTTTACGAGTAAGACC
1 CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACC
82564130 CTGTCTGGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
55 2 0.02
56 80 0.96
57 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.36
Consensus pattern (56 bp):
CATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACATTGA
Found at i:82571547 original size:12 final size:12
Alignment explanation
Indices: 82571479--82571548 Score: 58
Period size: 12 Copynumber: 5.8 Consensus size: 12
82571469 TACTTTAATA
82571479 TTAA-ATTAAA-
1 TTAATATTAAAT
*
82571489 TTAATATTTAAT
1 TTAATATTAAAT
82571501 TTAATATTAAAT
1 TTAATATTAAAT
*
82571513 CT--TATTAAAT
1 TTAATATTAAAT
82571523 TAATAAGATATTAAAT
1 T--T-A-ATATTAAAT
82571539 TTAATATTAA
1 TTAATATTAA
82571549 GATAATCACT
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
10 12 0.25
11 5 0.10
12 20 0.42
13 1 0.02
14 1 0.02
16 9 0.19
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (12 bp):
TTAATATTAAAT
Found at i:82577590 original size:34 final size:35
Alignment explanation
Indices: 82577547--82577612 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
82577537 GTATTATTTT
*
82577547 AATTACTTATTAT-ATTTTTTTTAAGGTTAACTCA
1 AATTACTTATTATAAATTTTTTTAAGGTTAACTCA
82577581 AATTACTTATTATAAATTTTTTTAAGGTTAAC
1 AATTACTTATTATAAATTTTTTTAAGGTTAAC
82577613 ATAACACTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 13 0.43
35 17 0.57
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.52
Consensus pattern (35 bp):
AATTACTTATTATAAATTTTTTTAAGGTTAACTCA
Found at i:82580260 original size:48 final size:48
Alignment explanation
Indices: 82580199--82580736 Score: 880
Period size: 48 Copynumber: 11.0 Consensus size: 48
82580189 AAATTGATGC
82580199 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
82580247 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
82580295 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* *
82580343 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAATATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-A-A-ATATGT
82580394 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
82580442 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
*
82580490 ATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* *
82580538 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-ATATGT
82580590 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
** *
82580638 ATGAGATATACATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGT
*
82580688 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
82580736 A
1 A
82580737 GGCGATGTGT
Statistics
Matches: 460, Mismatches: 19, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.00
48 318 0.69
49 7 0.02
50 44 0.10
51 46 0.10
52 44 0.10
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
Found at i:82580531 original size:195 final size:196
Alignment explanation
Indices: 82580199--82580736 Score: 981
Period size: 195 Copynumber: 2.7 Consensus size: 196
82580189 AAATTGATGC
*
82580199 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
*
82580264 GGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
66 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
82580329 AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCG-AATATATATA
131 AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
82580393 T
196 T
82580394 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
*
82580459 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCT
66 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
82580524 AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
131 AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
82580589 T
196 T
*
82580590 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATACATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
*
82580655 GGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATG
66 GGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
82580719 GCTAGTGTGAAATATGTA
128 GCTAATGTGAAATATGTA
82580737 GGCGATGTGT
Statistics
Matches: 332, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
195 182 0.55
196 96 0.29
197 2 0.01
198 52 0.16
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (196 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
T
Found at i:82580960 original size:37 final size:37
Alignment explanation
Indices: 82580883--82580990 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
82580873 GGAAATATAT
*
82580883 TCCGGGTAAGACCCGATGACTACGTGT-GAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
82580919 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
82580956 TCCGGGTAAGACCTGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
82580991 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 27 0.40
37 40 0.60
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:82582305 original size:40 final size:40
Alignment explanation
Indices: 82582251--82582609 Score: 538
Period size: 40 Copynumber: 9.0 Consensus size: 40
82582241 GAGAGTTATA
* *
82582251 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
82582291 TATATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
82582331 TATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
82582371 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
82582411 TATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * *
82582451 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
82582491 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
82582531 TATATCCAGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
82582571 TATATCCGGGCTAGGTCTCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
82582610 ATGTGTATTC
Statistics
Matches: 287, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 287 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:82582823 original size:25 final size:25
Alignment explanation
Indices: 82582773--82582823 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
82582763 TGTGTAACAA
* *
82582773 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
82582798 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
82582823 C
1 C
82582824 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:82584333 original size:48 final size:48
Alignment explanation
Indices: 82584268--82584801 Score: 759
Period size: 48 Copynumber: 11.1 Consensus size: 48
82584258 GCTGAAATTG
82584268 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
82584316 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
82584364 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
82584414 ATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
*
82584466 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
82584514 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
82584562 ATGTATGAGATATGTATATGTGGTACAGCCGAATGGCTAA--TG----
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
82584604 -TG-A--A-ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
82584649 ATATACATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGT--ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
82584699 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
82584749 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
82584797 ATGTA
1 ATGTA
82584802 GGCGATGTGT
Statistics
Matches: 442, Mismatches: 21, Indels: 46
0.87 0.04 0.09
Matches are distributed among these distances:
37 30 0.07
38 1 0.00
39 1 0.00
40 1 0.00
41 2 0.00
46 3 0.01
47 1 0.00
48 220 0.50
49 8 0.02
50 89 0.20
51 6 0.01
52 80 0.18
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:82584611 original size:198 final size:191
Alignment explanation
Indices: 82584271--82584798 Score: 836
Period size: 198 Copynumber: 2.7 Consensus size: 191
82584261 GAAATTGATG
*
82584271 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
82584336 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
* * * *
82584401 TAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATAT
131 TAATGTG--A-A-ATATA--A-ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATAT
82584466 ATA
189 ATA
82584469 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
*
82584534 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTACAGCCGAATGGC
66 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
82584599 TAATGTG------AAATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
131 TAATGTGAAATATAAATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
*
82584654 CATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
*
82584719 TGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAAT
66 TGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
*
82584783 GGCTAGTGTGAAATAT
128 GGCTAATGTGAAATAT
82584799 GTAGGCGATG
Statistics
Matches: 311, Mismatches: 10, Indels: 23
0.90 0.03 0.07
Matches are distributed among these distances:
184 1 0.00
185 129 0.41
186 3 0.01
187 43 0.14
188 1 0.00
198 134 0.43
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (191 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
TAATGTGAAATATAAATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
Found at i:82584621 original size:37 final size:37
Alignment explanation
Indices: 82584571--82584653 Score: 139
Period size: 37 Copynumber: 2.2 Consensus size: 37
82584561 TATGTATGAG
* *
82584571 ATATGTATATGTGGTACAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAA
82584608 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAA
*
82584645 ATATATATA
1 ATATGTATA
82584654 CATGAGATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (37 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAA
Found at i:82584651 original size:185 final size:187
Alignment explanation
Indices: 82584423--82584801 Score: 665
Period size: 185 Copynumber: 2.0 Consensus size: 187
82584413 TATATATGAG
* * * *
82584423 ATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATATGAGATATGTATATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATACATGAGATATGTATATGTG
82584488 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-CT
66 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTC-
* *
82584552 AATGTG-AA-ATATGTATGAGATATGTATATGTGGTACAGCCGAATGGCTAATGTGAA
130 AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82584608 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATACATGAGATATGTATATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATACATGAGATATGTATATGTG
82584673 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCA
66 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCA
*
82584738 ATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
131 ATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
82584795 ATATGTA
1 ATATGTA
82584802 GGCGATGTGT
Statistics
Matches: 184, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
185 129 0.70
186 3 0.02
187 52 0.28
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (187 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATACATGAGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCA
ATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:82584687 original size:137 final size:133
Alignment explanation
Indices: 82584475--82584755 Score: 456
Period size: 137 Copynumber: 2.1 Consensus size: 133
82584465 TATATATGAG
* *
82584475 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATGAGATATGCATATGTGGTAA
* *
82584540 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTACAGCCGAATGG-CTAATG
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATG
82584604 TGAA
130 TGAA
*
82584608 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATACATGAGATATGTATATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCG-AA-ATATAT--ATGAGATATGCATATGTG
82584673 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCA
62 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCA
82584738 ATGTGAA
127 ATGTGAA
*
82584745 ATATATATATG
1 ATATGTATATG
82584756 AGATATGTAT
Statistics
Matches: 137, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
133 34 0.25
134 2 0.01
135 5 0.04
137 95 0.69
138 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (133 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATGAGATATGCATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGT
GAA
Found at i:82584799 original size:98 final size:99
Alignment explanation
Indices: 82584272--82584801 Score: 756
Period size: 98 Copynumber: 5.5 Consensus size: 99
82584262 AAATTGATGT
*
82584272 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
* *
82584337 GGTAAAGCCGAATGGCTAATGTG-AA-ATATGT-
66 GGTAAAGCCGAATGGCTAATGCGAAATATATATA
* * *
82584368 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATAT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGCATAT
* * *
82584433 GTGGTAAAGCTGAATGGTTAATGTGAAATATATATA
64 GTGGTAAAGCCGAATGGCTAATGCGAAATATATATA
82584469 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
1 -ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
* *
82584534 TGGTAAAGCCGAATGGCTAATGTG-AA-ATATGT-
65 TGGTAAAGCCGAATGGCTAATGCGAAATATATATA
*
82584566 ATGAGATATGTATATGTGGTACAGCCGAATGGCTAATGTG-AA-A--TAT--G---T--ATATGT
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
82584620 GGTAAAGCCGAATGGCTAATGCGAAATATATATA
66 GGTAAAGCCGAATGGCTAATGCGAAATATATATA
82584654 CATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
1 -ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATG
*
82584719 TGGTAAAGCCGAATGG-TCAATGTGAAATATATAT-
65 TGGTAAAGCCGAATGGCT-AATGCGAAATATATATA
*
82584753 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
82584802 GGCGATGTGT
Statistics
Matches: 395, Mismatches: 17, Indels: 42
0.87 0.04 0.09
Matches are distributed among these distances:
85 28 0.07
86 2 0.01
87 6 0.02
89 39 0.10
90 3 0.01
91 1 0.00
92 3 0.01
93 3 0.01
94 1 0.00
95 3 0.01
96 78 0.20
97 2 0.01
98 97 0.25
99 5 0.01
100 83 0.21
101 2 0.01
102 39 0.10
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (99 bp):
ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGT
GGTAAAGCCGAATGGCTAATGCGAAATATATATA
Found at i:82585056 original size:37 final size:37
Alignment explanation
Indices: 82584948--82585056 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
82584938 GGAAATATAT
*
82584948 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
82584985 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
82585022 TCCGGGTAAGACCTGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
82585057 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:82586280 original size:59 final size:59
Alignment explanation
Indices: 82586187--82586390 Score: 354
Period size: 59 Copynumber: 3.4 Consensus size: 59
82586177 CATAGTCAAT
*
82586187 AATATATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAGACAATATTAA
1 AATA-ATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATTAA
* *
82586247 AATAATTTGTACAAAATTATTCAAAAGAACTTCTATTGTATTAAATGAAACAATATTAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATTAA
* *
82586306 AATAATTTGTACAAAAATATTTAAAAGAACTTCTATTTTATTAAATGAAACAATATAAA
1 AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATTAA
82586365 AATAATTTGTACAAAAATATTCAAAA
1 AATAATTTGTACAAAAATATTCAAAA
82586391 ATAAAACAAT
Statistics
Matches: 136, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
59 132 0.97
60 4 0.03
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (59 bp):
AATAATTTGTACAAAAATATTCAAAAGAACTTCTATTTTATTAAATGAAACAATATTAA
Found at i:82590128 original size:25 final size:27
Alignment explanation
Indices: 82590100--82590156 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
82590090 CTAATTATCA
82590100 CATAAG-GA-CCTCCACTTTAATATTT
1 CATAAGCGATCCTCCACTTTAATATTT
*
82590125 CAT-AGCTATTTCCTCCACTTTAATATTT
1 CATAAGCGA--TCCTCCACTTTAATATTT
82590153 CATA
1 CATA
82590157 GCTATTAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 2 0.08
25 4 0.15
28 20 0.77
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (27 bp):
CATAAGCGATCCTCCACTTTAATATTT
Found at i:82590139 original size:28 final size:28
Alignment explanation
Indices: 82590108--82590162 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
82590098 CACATAAGGA
82590108 CCTCCACTTTAATATTTCATAGCTATTT
1 CCTCCACTTTAATATTTCATAGCTATTT
82590136 CCTCCACTTTAATATTTCATAGCTATT
1 CCTCCACTTTAATATTTCATAGCTATT
82590163 AGACACTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.25, G:0.04, T:0.45
Consensus pattern (28 bp):
CCTCCACTTTAATATTTCATAGCTATTT
Found at i:82592947 original size:40 final size:40
Alignment explanation
Indices: 82592860--82593068 Score: 194
Period size: 40 Copynumber: 5.3 Consensus size: 40
82592850 CCTTCGGAAT
* * *
82592860 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
82592899 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
82592939 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGT-
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* *
82592978 TTAGCCCGGATAT-A-AACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
82593016 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
82593056 TTAGCCCGGATAT
1 TTAACCCGGATAT
82593069 CATTCCAATG
Statistics
Matches: 141, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
37 21 0.15
38 15 0.11
39 12 0.09
40 91 0.65
41 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:82593015 original size:77 final size:78
Alignment explanation
Indices: 82592860--82593068 Score: 235
Period size: 77 Copynumber: 2.7 Consensus size: 78
82592850 CCTTCGGAAT
* * * ** * *
82592860 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA--AACTCGCAC
82592924 AATTGCCTTCGGGTC
64 AATTGCCTTCGGGTC
* ** * *
82592939 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGG-TTTAGCCCGGATATAAACTCGCACGA
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAACTCGCAC-A
82593003 A-TGCCTTCGGGTC
65 ATTGCCTTCGGGTC
* * *
82593016 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82593069 CATTCCAATG
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 51 0.47
78 15 0.14
79 15 0.14
80 27 0.25
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (78 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAACTCGCACAA
TTGCCTTCGGGTC
Found at i:82600965 original size:40 final size:40
Alignment explanation
Indices: 82600878--82601087 Score: 203
Period size: 40 Copynumber: 5.3 Consensus size: 40
82600868 CCTTCGGAAT
* *
82600878 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATGACTCGCACAAATGCCTTCGGGTC
* * * *
82600917 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATGACTCGCACAAATGCCTTCGGGTC
* ** * *
82600957 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGT-
1 TTAACCCGGATATAATGACTCGCACAAATGCCTTCGGGTC
* * *
82600996 TTAGCCCGGATATAA-CACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATGACTCGCACAAATGCCTTCGGGTC
* * * * *
82601035 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATGACTCGCACAAATGCCTTCGGGTC
*
82601075 TTAGCCCGGATAT
1 TTAACCCGGATAT
82601088 CATTCCAATG
Statistics
Matches: 141, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
38 22 0.16
39 26 0.18
40 91 0.65
41 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TTAACCCGGATATAATGACTCGCACAAATGCCTTCGGGTC
Found at i:82601034 original size:78 final size:79
Alignment explanation
Indices: 82600878--82601087 Score: 237
Period size: 78 Copynumber: 2.7 Consensus size: 79
82600868 CCTTCGGAAT
* * * ** * **
82600878 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA-ACACTCGCAC
82600942 AATTGCCTTCGGGTC
65 AATTGCCTTCGGGTC
* ** * *
82600957 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGG-TTTAGCCCGGATATAACACTCGCACG
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACACTCGCAC-
82601021 AA-TGCCTTCGGGTC
65 AATTGCCTTCGGGTC
* * *
82601035 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
82601088 CATTCCAATG
Statistics
Matches: 108, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
78 51 0.47
79 30 0.28
80 27 0.25
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (79 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACACTCGCACA
ATTGCCTTCGGGTC
Found at i:82606329 original size:28 final size:29
Alignment explanation
Indices: 82606265--82606329 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 29
82606255 TTCACATTTA
* *
82606265 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
* * *
82606294 TTTCTCAATTTAA-TCCTTAATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
82606322 TTTGTCAA
1 TTTCTCAA
82606330 AAATCACTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.45
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:82609219 original size:22 final size:23
Alignment explanation
Indices: 82609193--82609257 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
82609183 TATTGAAAAT
82609193 ACATATTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
*
82609215 GCATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
*
82609239 ACATTTTACATAATATATA
1 ACATATT-CATAATATATA
82609258 CACATATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 11 0.31
25 7 0.20
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:82609368 original size:2 final size:2
Alignment explanation
Indices: 82609327--82609352 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82609317 AAGATATACT
82609327 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
82609353 AGATATGTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:82609727 original size:25 final size:24
Alignment explanation
Indices: 82609680--82609727 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
82609670 AAAATAAGCC
* *
82609680 TATACGTAAATATATATATACATA
1 TATACGTAAACATATATAAACATA
82609704 TATACGTAAAACATATATAAACAT
1 TATACGT-AAACATATATAAACAT
82609728 TGGTGATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
TATACGTAAACATATATAAACATA
Found at i:82609857 original size:3 final size:3
Alignment explanation
Indices: 82609849--82609914 Score: 100
Period size: 3 Copynumber: 22.0 Consensus size: 3
82609839 ACAAAAGCAC
82609849 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
82609897 ATA ATA AT- ATCA ATA ATA
1 ATA ATA ATA AT-A ATA ATA
82609915 TGAAAATAAC
Statistics
Matches: 59, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.07
3 51 0.86
4 4 0.07
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:82611680 original size:87 final size:85
Alignment explanation
Indices: 82611476--82612269 Score: 495
Period size: 87 Copynumber: 9.4 Consensus size: 85
82611466 CATGTGACTC
* * * ** * *
82611476 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAAGTATAAAT-TGAAAAAACATTA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATAAGAAAGAA-A--A
* *
82611540 ATTGAAAATACCTCGGCGTGTGATCCT
63 GTTG-AAATACCTCAGC--GTG-TCCT
* * * *
82611567 GAGGCTCAATTCACCTCTAGCAATATGAATTAATTTTGGAAAAACATAAATCAAGAAACG-AAAG
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAAT-AAGAAA-GAAAAG
*
82611631 TTGACAATACCTCAGCGTGTCTT
64 TTGA-AATACCTCAGCGTGTCCT
* * ** **
82611654 GAGGCTCAACTCACCTTTCGCGATATGAGTTTTTTTTTTTTG-AAAACATAAATTGGAAAGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAG---TTAATTTTTGAAAAACATAAATAAGAAAGAAAA
82611718 GTTGAAATACCTCAGCGTGTCCT
63 GTTGAAATACCTCAGCGTGTCCT
* ** * * * **
82611741 GAGGCTCAACTCACCTCTCGCGATATGAGTTTTTTTTTTGAAGAGCAGAAATTGGAAAGCAAAA-
1 GAGGCTCAACTCACCTCTCGCAATATGAG-TTAATTTTTGAAAAACATAAATAAGAAAG-AAAAG
* *
82611805 TCGAAAATACCTCAGCGTGCCCT
64 TTG-AAATACCTCAGCGTGTCCT
* * * *
82611828 GAGGCTCAACTCACTTCTCGCAATATGAGCTAATTTTTGAAAAACATAAATTGGAGAAAAACAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAA-T-AAGAAAGA-A-A
* *
82611893 AATTGAAATTACCTCAGCATGTCCT
62 AGTTGAAA-TACCTCAGCGTGTCCT
* **
82611918 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC-------AGAAATTAAA---
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATAAGAAAGAAAAGTT
* *
82611973 -AAATACCTCATCGTGACCT
66 GAAATACCTCAGCGTGTCCT
* * *
82611992 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTG--AAACATGGAAATTAA-AACAG-AA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAT--AAA-TAAGAA-AGAAA
* *
82612053 A-TTGAAAATACCTCAACGTGCCCT
62 AGTTG-AAATACCTCAGCGTGTCCT
* * ** *
82612077 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGCAAT-----TG---A---
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATAAGAAAGAAAAGTT
* *
82612131 -AAATACCTCAGCGTGCCCC
66 GAAATACCTCAGCGTGTCCT
** * * * * **
82612150 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAAT-TGAAAGGCTTAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAAACATAAATAAGAAA-G-AAAA
*
82612214 -TTGAAAATACCTCGGCGTGTGACCT
63 GTTG-AAATACCTCAGCGTGT--CCT
*
82612239 GAGGTTCAACTCACCTCTCGCAATATGAGTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTT
82612270 GAAATTAAAA
Statistics
Matches: 574, Mismatches: 79, Indels: 102
0.76 0.10 0.14
Matches are distributed among these distances:
72 4 0.01
73 46 0.08
74 65 0.11
75 3 0.01
77 1 0.00
79 4 0.01
80 1 0.00
81 10 0.02
82 2 0.00
83 1 0.00
84 1 0.00
85 67 0.12
86 32 0.06
87 143 0.25
88 20 0.03
89 47 0.08
90 79 0.14
91 42 0.07
92 1 0.00
93 5 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (85 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATAAGAAAGAAAAGTT
GAAATACCTCAGCGTGTCCT
Found at i:82611928 original size:90 final size:87
Alignment explanation
Indices: 82611476--82612133 Score: 556
Period size: 87 Copynumber: 7.7 Consensus size: 87
82611466 CATGTGACTC
* * * ** **
82611476 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAAGTATAAATTGAAAAAACATTAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATTGAAAAAACAGAAA
*
82611541 TTGAAAATACCTCGGCGTGTGATCCT
66 TTG-AAATACCTCAGC--GTG-TCCT
* * * * * *
82611567 GAGGCTCAATTCACCTCTAGCAATATGAATTAATTTTGGAAAAACATAAA-TCAAGAAAC-GAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATTGAAAAAACAGAAA
*
82611630 GTTGACAATACCTCAGCGTGTCTT
66 -TTGA-AATACCTCAGCGTGTCCT
* * ** * *
82611654 GAGGCTCAACTCACCTTTCGCGATATGAGTTTTTTTTTTTTG-AAAACATAAATTGGAAAGA-A-
1 GAGGCTCAACTCACCTCTCGCAATATGAG---TTAATTTTTGAAAAACATAAATTGAAAAAACAG
*
82611716 AAGTTGAAATACCTCAGCGTGTCCT
63 AAATTGAAATACCTCAGCGTGTCCT
* ** * * * * *
82611741 GAGGCTCAACTCACCTCTCGCGATATGAGTTTTTTTTTTGAAGAGCAGAAATTG-GAAAGCA-AA
1 GAGGCTCAACTCACCTCTCGCAATATGAG-TTAATTTTTGAAAAACATAAATTGAAAAAACAGAA
* *
82611804 ATCGAAAATACCTCAGCGTGCCCT
65 ATTG-AAATACCTCAGCGTGTCCT
* *
82611828 GAGGCTCAACTCACTTCTCGCAATATGAGCTAATTTTTGAAAAACATAAATTGGAGAAAAACAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATT-GA-AAAAACAGA
*
82611893 AATTGAAATTACCTCAGCATGTCCT
64 AATTGAAA-TACCTCAGCGTGTCCT
* *
82611918 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--------A-AAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATTGAAAAAACAGAAA
* *
82611974 ---A-ATACCTCATCGTGACCT
66 TTGAAATACCTCAGCGTGTCCT
* * *
82611992 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTG--AAACATGGAAATT---AAAACAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACAT--AAATTGAAAAAACAGA
* *
82612052 AATTGAAAATACCTCAACGTGCCCT
64 AATTG-AAATACCTCAGCGTGTCCT
* * **
82612077 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGCAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATTGAAAA
82612134 TACCTCAGCG
Statistics
Matches: 466, Mismatches: 68, Indels: 69
0.77 0.11 0.11
Matches are distributed among these distances:
72 5 0.01
74 55 0.12
75 1 0.00
76 1 0.00
79 4 0.01
80 4 0.01
84 1 0.00
85 69 0.15
86 32 0.07
87 123 0.26
88 9 0.02
89 23 0.05
90 98 0.21
91 41 0.09
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (87 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATTGAAAAAACAGAAA
TTGAAATACCTCAGCGTGTCCT
Found at i:82612003 original size:74 final size:73
Alignment explanation
Indices: 82611883--82612033 Score: 221
Period size: 74 Copynumber: 2.1 Consensus size: 73
82611873 ATAAATTGGA
* * *
82611883 GAAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
82611948 TGATTTTT
66 TGATTTTT
* * * *
82611956 GAAAAACAGAAATTAAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAG
1 GAAAAACAGAAATT-GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
82612021 CTGATTTTT
65 TTGATTTTT
82612030 GAAA
1 GAAA
82612034 CATGGAAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 14 0.20
74 56 0.80
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (73 bp):
GAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTT
Found at i:82612042 original size:74 final size:74
Alignment explanation
Indices: 82611902--82612366 Score: 382
Period size: 74 Copynumber: 6.0 Consensus size: 74
82611892 AAATTGAAAT
* * * *
82611902 TACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAGAA
82611967 ATTAAAAAA
66 ATTAAAAAA
* * * * *
82611976 TACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAACATGGAA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAGAA
82612041 ATTAAAACAGAAATTGAAAA
66 ATT--------AA---AAAA
* * *
82612061 TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAA-ACAGC
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AACATAGA
*
82612125 AATT-GAAAA
65 AATTAAAAAA
* **
82612134 TACCTCAGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGAAAGACAGA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AA-AC---
*
82612199 AATTGAAAGGCTTAATTGAAAA
60 -ATAGAAA---TTAA---AAAA
* * * ** ** *
82612221 TACCTCGGCGTGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACACA-
1 TACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAG
*
82612285 AAATT-GAAAA
64 AAATTAAAAAA
* * *
82612295 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTGAAAAAGTAGA
1 TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACA-TAGA
82612359 AATTAAAA
65 AATTAAAA
82612367 GGTTCAACCA
Statistics
Matches: 311, Mismatches: 48, Indels: 64
0.74 0.11 0.15
Matches are distributed among these distances:
71 6 0.02
72 37 0.12
73 54 0.17
74 81 0.26
75 2 0.01
78 2 0.01
80 4 0.01
81 3 0.01
82 3 0.01
83 2 0.01
85 62 0.20
86 4 0.01
87 14 0.05
88 2 0.01
89 35 0.11
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (74 bp):
TACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACATAGAA
ATTAAAAAA
Found at i:82612102 original size:85 final size:86
Alignment explanation
Indices: 82611958--82612116 Score: 266
Period size: 85 Copynumber: 1.9 Consensus size: 86
82611948 TGATTTTTGA
* *
82611958 AAAACAGAAATTAAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCT
1 AAAACAGAAATTAAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
82612023 GATTTTTGAAACATGGAAATT
66 GATTTTTGAAACATGGAAATT
* * *
82612044 AAAACAGAAATT-GAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTAAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
82612108 GATTTTTGA
66 GATTTTTGA
82612117 CAAACAGCAA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
85 56 0.82
86 12 0.18
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (86 bp):
AAAACAGAAATTAAAAAATACCTCAACGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
GATTTTTGAAACATGGAAATT
Found at i:82612103 original size:159 final size:159
Alignment explanation
Indices: 82611802--82612366 Score: 683
Period size: 159 Copynumber: 3.5 Consensus size: 159
82611792 TTGGAAAGCA
* * * *
82611802 AAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGCTAATTTTTG
1 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
* * * * * *
82611867 AAAAACATAAATTGGAGAAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCAC
66 AAACATAGAAATT---G-AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
82611932 CTCTCGCAATATGAGTTGATTTTTGAAAAACAG
127 CTCTCGCAATATGAGTTGATTTTTGAAAAACAG
* * * * *
82611965 AAATTAAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AAATT-GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
* * *
82612030 GAAACATGGAAATT-AAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTC
65 GAAACATAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTC
*
82612094 TCGCAATATGAGTTGATTTTTGACAAACAG
130 TCGCAATATGAGTTGATTTTTGAAAAACAG
* ** *
82612124 CAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTT
* * * ** * *
82612189 GAAAGACAGAAATTGAAAGGC-TTAATTGAAAATACCTCGGCGTGTGACCTGAGGTTCAACTCAC
65 GAAACATAGAAATTGAAA-ACAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCAC
** *
82612253 CTCTCGCAATATGAGTTGA-AATT-AAAAACACA
127 CTCTCGCAATATGAGTTGATTTTTGAAAAACA-G
82612285 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTG
1 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
*
82612349 AAAAAGTAGAAATT-AAAA
66 AAACA-TAGAAATTGAAAA
82612367 GGTTCAACCA
Statistics
Matches: 348, Mismatches: 46, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
158 46 0.13
159 107 0.31
160 32 0.09
161 58 0.17
162 38 0.11
163 4 0.01
164 63 0.18
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (159 bp):
AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACATAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGAAAAACAG
Found at i:82612169 original size:73 final size:73
Alignment explanation
Indices: 82612044--82612206 Score: 256
Period size: 73 Copynumber: 2.2 Consensus size: 73
82612034 CATGGAAATT
*
82612044 AAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
82612109 A-TTTTTG
66 ATTTTTTG
* * **
82612116 ACAAACAGCAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
82612181 GATTTTTTG
65 GATTTTTTG
82612190 AAAGACAGAAATTGAAA
1 AAA-ACAGAAATTGAAA
82612207 GGCTTAATTG
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
72 1 0.01
73 62 0.76
74 19 0.23
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:82612290 original size:87 final size:87
Alignment explanation
Indices: 82612125--82612293 Score: 207
Period size: 89 Copynumber: 1.9 Consensus size: 87
82612115 GACAAACAGC
* ** ** **
82612125 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTAA
*
82612190 AAAGACAGAAATTGAAAGGCTT
66 AAACACAGAAATTGAAAGGCTT
* * *
82612212 AATTGAAAATACCTCGGCGTGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-AATT
1 AATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATT
82612276 AAAAACACA-AAATTGAAA
64 AAAAACACAGAAATTGAAA
82612294 ATACCTCAGC
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 26 0.38
88 8 0.12
89 35 0.51
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (87 bp):
AATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTAA
AAACACAGAAATTGAAAGGCTT
Found at i:82612465 original size:126 final size:126
Alignment explanation
Indices: 82612240--82612473 Score: 364
Period size: 126 Copynumber: 1.9 Consensus size: 126
82612230 GTGTGACCTG
82612240 AGGTTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACACAAAATTGAAAATACCTCAGCG
1 AGGTTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACACAAAATTGAAAATACCTCAGCG
82612305 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
** * * *
82612366 AGGTTCAAC-CACCTCTCGCAATATGAGTTGATTCTTGACAAACA-GAAATTGAAATTACCTCAG
1 AGGTTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAAAACACAAAATTGAAAATACCTCAG
* * *
82612429 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
64 CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
82612474 TTTGAGAGAA
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
125 22 0.22
126 70 0.71
127 6 0.06
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (126 bp):
AGGTTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACACAAAATTGAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
Found at i:82612512 original size:74 final size:75
Alignment explanation
Indices: 82612370--82612646 Score: 411
Period size: 74 Copynumber: 3.7 Consensus size: 75
82612360 ATTAAAAGGT
* *
82612370 TCAAC-CACCTCTCGCAATATGAGTTGA--TTCTTGACAAACAGAAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCGT
82612432 GTCCTGAGGC
66 GTCCTGAGGC
* *
82612442 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAGA-AGAAATTGAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCGT
*
82612506 GCCCTGAGGC
66 GTCCTGAGGC
* * * *
82612516 TCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGTGACAAACATAAATTGAAATTTCCTCAGC
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-TGACAAACAGAAATTGAAAATACCTCAGC
82612581 GTGTCCTGAGGC
64 GTGTCCTGAGGC
82612593 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAGAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAA-ACAGAAATTGAAAA
82612647 ACAGAAATTG
Statistics
Matches: 183, Mismatches: 15, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
72 5 0.03
73 22 0.12
74 60 0.33
75 29 0.16
76 11 0.06
77 56 0.31
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (75 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCGT
GTCCTGAGGC
Found at i:82612645 original size:14 final size:14
Alignment explanation
Indices: 82612626--82612660 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
82612616 GTTGATTTTT
*
82612626 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
82612640 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
82612654 TTGAAAA
1 TTGAAAA
82612661 GACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:82612709 original size:91 final size:87
Alignment explanation
Indices: 82612556--82612817 Score: 315
Period size: 84 Copynumber: 3.0 Consensus size: 87
82612546 TTTTTGTGAC
* *** * *
82612556 AAACATAAATTGAAATTTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAAGACCTCAGCATGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
82612621 TTTTTTTGAAAGACAGAAATTGAA
66 --TTTTTGAAAGACAGAAATTGAA
82612645 AAACAGAAATTGAAAAGACCTCAGCATGTGAGAC-GAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAAGACCTCAGCATGT---ACTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
82612709 TGA-TTTT----GACAAAAATTGAAGA
63 TGATTTTTGAAAGACAGAAATTG-A-A
** *
82612731 AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAAGACCTCAGCATGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
82612796 TTTTTGAAA-ACAGAAATT-AA
66 TTTTTGAAAGACAGAAATTGAA
82612816 AA
1 AA
82612818 TTACCTCAGC
Statistics
Matches: 151, Mismatches: 11, Indels: 26
0.80 0.06 0.14
Matches are distributed among these distances:
83 1 0.01
84 43 0.28
85 8 0.05
86 29 0.19
88 12 0.08
89 24 0.16
91 33 0.22
92 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (87 bp):
AAACAGAAATTGAAAAGACCTCAGCATGTACTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAAGACAGAAATTGAA
Found at i:82612846 original size:72 final size:72
Alignment explanation
Indices: 82612729--82612963 Score: 341
Period size: 72 Copynumber: 3.2 Consensus size: 72
82612719 AAAAATTGAA
* *
82612729 GAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
82612794 GATTTTT
66 GATTTTT
*
82612801 GAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTT
1 GAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
82612866 GATTTTTTT
66 GA--TTTTT
* * * *
82612875 GAAGAGCAGAAATTGAAAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCCCGCAATATGAG
1 GAA-AACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
82612939 TTGAATTTTT
64 TTG-ATTTTT
82612949 G-AAACAGAAA-TAAAA
1 GAAAACAGAAATTAAAA
82612964 GCATCAGAAT
Statistics
Matches: 149, Mismatches: 9, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
70 4 0.03
71 1 0.01
72 71 0.48
73 1 0.01
74 14 0.09
75 53 0.36
76 5 0.03
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (72 bp):
GAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTT
Found at i:82612887 original size:247 final size:240
Alignment explanation
Indices: 82612437--82612893 Score: 679
Period size: 247 Copynumber: 1.9 Consensus size: 240
82612427 AGCGTGTCCT
* *
82612437 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAGAGAAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATTGAGAAAAGAAATTGAAAATACCTCA
* * *
82612502 GCGTGCCCTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGTGACAAACATAAATT
66 GCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGTGACAAACAGAAATT
* *
82612567 GAAATTTCCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
129 AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
82612632 GACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGAC
194 GACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGAC
82612679 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACAAAAATTGAAGAAAACAGAAATTGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-------ATTG-AG-AAA-AGAAATTGA
* *
82612744 AATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT-TGA-AAA
56 AAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGTGACAAA
*
82612806 CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTT
121 CAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
82612871 TTTTG-AAGAGCAGAAATTGAAAA
186 TTTTGAAAGA-CAGAAATTGAAAA
82612894 TACCTCAGCG
Statistics
Matches: 194, Mismatches: 10, Indels: 17
0.88 0.05 0.08
Matches are distributed among these distances:
242 37 0.19
246 4 0.02
247 82 0.42
248 3 0.02
249 7 0.04
250 2 0.01
251 2 0.01
252 57 0.29
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (240 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATTGAGAAAAGAAATTGAAAATACCTCA
GCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGTGACAAACAGAAATTAA
AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGA
CAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGAC
Found at i:82619360 original size:22 final size:23
Alignment explanation
Indices: 82619334--82619398 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
82619324 TATTGAAAAT
82619334 ACATATTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
*
82619356 GCATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
*
82619380 ACATTTTACATAATATATA
1 ACATATT-CATAATATATA
82619399 CACATATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 11 0.31
25 7 0.20
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:82619859 original size:25 final size:24
Alignment explanation
Indices: 82619812--82619859 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
82619802 AAAATAAGCC
* *
82619812 TATACGTAAATATATATATACATA
1 TATACGTAAACATATATAAACATA
82619836 TATACGTAAAACATATATAAACAT
1 TATACGT-AAACATATATAAACAT
82619860 TGGTGATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
TATACGTAAACATATATAAACATA
Found at i:82619990 original size:3 final size:3
Alignment explanation
Indices: 82619982--82620045 Score: 103
Period size: 3 Copynumber: 21.0 Consensus size: 3
82619972 ACAAAAGCAC
82619982 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
82620028 ATA ATA AT- ATCA ATA ATA
1 ATA ATA ATA AT-A ATA ATA
82620046 TGAAAATAAC
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.03
3 51 0.88
4 5 0.09
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:82627433 original size:2 final size:2
Alignment explanation
Indices: 82627428--82627469 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
82627418 TATACATCAC
82627428 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82627470 CTTACCAAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82628717 original size:28 final size:29
Alignment explanation
Indices: 82628653--82628717 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 29
82628643 TTCACATTTA
* *
82628653 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
* * *
82628682 TTTCTCAATTTAA-TCCTTAATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
82628710 TTTGTCAA
1 TTTCTCAA
82628718 AAATCACTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.45
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:82634658 original size:27 final size:27
Alignment explanation
Indices: 82634618--82634754 Score: 137
Period size: 27 Copynumber: 5.2 Consensus size: 27
82634608 AGGAAGCGTC
*
82634618 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
82634645 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
82634671 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* * *
82634699 CTGGTAGCTCTGTCAC-ATAAGT-T--T
1 CTGGTGGCTCTGCCACAATTA-TCTGAT
82634723 -TGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
82634749 CTGGTG
1 CTGGTG
82634755 ACTTCGTCAC
Statistics
Matches: 90, Mismatches: 9, Indels: 22
0.74 0.07 0.18
Matches are distributed among these distances:
22 1 0.01
23 15 0.17
24 2 0.02
26 8 0.09
27 61 0.68
28 3 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:82634697 original size:54 final size:53
Alignment explanation
Indices: 82634615--82634754 Score: 191
Period size: 54 Copynumber: 2.7 Consensus size: 53
82634605 TGGAGGAAGC
82634615 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATA-TCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATA-AGT-T
* *
82634669 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTAGCTCTGTCACATAAGTT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATAAGTT
*
82634722 -T--TGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
82634755 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
49 6 0.08
50 23 0.29
52 1 0.01
53 2 0.03
54 48 0.60
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (53 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATAAGTT
Found at i:82636739 original size:49 final size:49
Alignment explanation
Indices: 82636678--82636778 Score: 175
Period size: 49 Copynumber: 2.1 Consensus size: 49
82636668 TTGTCAAAAG
* *
82636678 TCACTTTACAAATGTTGTTTATCTAACAACAAGCACACATTTTCTATTA
1 TCACTTTACAAATATTGTTTATCTAACAACAAGCACACATTTTCTATCA
*
82636727 TCACTTTACAAATATTGTTTATCTAACAACAAGCATACATTTTCTATCA
1 TCACTTTACAAATATTGTTTATCTAACAACAAGCACACATTTTCTATCA
82636776 TCA
1 TCA
82636779 AACATCAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.39
Consensus pattern (49 bp):
TCACTTTACAAATATTGTTTATCTAACAACAAGCACACATTTTCTATCA
Found at i:82637594 original size:20 final size:21
Alignment explanation
Indices: 82637558--82637596 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
82637548 ATTAGAAAAA
82637558 AAATTATAAAAATTATTAATT
1 AAATTATAAAAATTATTAATT
82637579 AAATTATAAAAA-TATTAA
1 AAATTATAAAAATTATTAA
82637597 AAAAATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AAATTATAAAAATTATTAATT
Found at i:82637980 original size:16 final size:17
Alignment explanation
Indices: 82637954--82637989 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
82637944 TATCCAACTA
82637954 TTTTGAATTTTTTGATG
1 TTTTGAATTTTTTGATG
*
82637971 TTTT-AATTTTTTGGTG
1 TTTTGAATTTTTTGATG
82637987 TTT
1 TTT
82637990 CTATTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (17 bp):
TTTTGAATTTTTTGATG
Found at i:82640772 original size:22 final size:22
Alignment explanation
Indices: 82640747--82640790 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
82640737 TAGTCATATA
82640747 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
82640769 ATAATTTATTACTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
82640791 TAACTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:82640828 original size:13 final size:14
Alignment explanation
Indices: 82640810--82640851 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
82640800 TTTCAATTTT
82640810 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
82640823 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
82640838 ATTTTAAATAATAT
1 ATTTT-AATAATAT
82640852 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:82640836 original size:16 final size:16
Alignment explanation
Indices: 82640814--82640850 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
82640804 AATTTTATTT
82640814 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
82640831 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
82640846 TAATA
1 TAATA
82640851 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:82640903 original size:15 final size:15
Alignment explanation
Indices: 82640883--82640940 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
82640873 ATTCAATATT
82640883 AATATTTTAATAATA
1 AATATTTTAATAATA
*
82640898 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
82640917 AATATATTAATAATA
1 AATATTTTAATAATA
*
82640932 AATGTTTTA
1 AATATTTTA
82640941 TATATAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 17 0.50
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:82641377 original size:14 final size:15
Alignment explanation
Indices: 82641358--82641396 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
82641348 CCAGAAAAGT
82641358 AAATCATTTTCT-AA
1 AAATCATTTTCTCAA
*
82641372 AAATCATTTT-TCGA
1 AAATCATTTTCTCAA
82641386 AAATCATTTTC
1 AAATCATTTTC
82641397 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 21 0.95
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (15 bp):
AAATCATTTTCTCAA
Found at i:82643248 original size:27 final size:27
Alignment explanation
Indices: 82643217--82643270 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
82643207 AACAGAAAGG
82643217 CTAAAACTAACTAATCATGAAGAAGTT
1 CTAAAACTAACTAATCATGAAGAAGTT
82643244 CTAAAACTAACTAATCATGAAGAAGTT
1 CTAAAACTAACTAATCATGAAGAAGTT
82643271 AAGTATAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (27 bp):
CTAAAACTAACTAATCATGAAGAAGTT
Found at i:82644983 original size:58 final size:58
Alignment explanation
Indices: 82644895--82645013 Score: 138
Period size: 58 Copynumber: 2.1 Consensus size: 58
82644885 AAAATTATTA
* *
82644895 TTTTAGAAAAATTTTAAATTTTGAACTTTCT-TATATATTCTTTAA-AATTTTTTATAATT
1 TTTTAGAAAAAATATAAATTTTGAACTTTCTATA-ATA-T-TTTAATAATTTTTTATAATT
**
82644954 TTTTA-AAAAAATATAAATTTTGGAA-TTTCTATAATATTTTAATTTTTTTTTATAATT
1 TTTTAGAAAAAATATAAATTTT-GAACTTTCTATAATATTTTAATAATTTTTTATAATT
82645011 TTT
1 TTT
82645014 GTTGTGAGAG
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
56 5 0.09
57 16 0.30
58 22 0.42
59 10 0.19
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.57
Consensus pattern (58 bp):
TTTTAGAAAAAATATAAATTTTGAACTTTCTATAATATTTTAATAATTTTTTATAATT
Found at i:82645546 original size:18 final size:18
Alignment explanation
Indices: 82645519--82645555 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
82645509 CCTAATTGTA
82645519 AAAAACTAAAAAATATAT
1 AAAAACTAAAAAATATAT
* *
82645537 AAAAATTAAAAATTATAT
1 AAAAACTAAAAAATATAT
82645555 A
1 A
82645556 TTTAAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAAACTAAAAAATATAT
Found at i:82646243 original size:11 final size:11
Alignment explanation
Indices: 82646227--82646262 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
82646217 GCAAATCTCA
82646227 AAAAAAAAAAC
1 AAAAAAAAAAC
82646238 AAAAAAAAAAC
1 AAAAAAAAAAC
*
82646249 AAAAACAAAAC
1 AAAAAAAAAAC
82646260 AAA
1 AAA
82646263 CCCTCCATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:82646252 original size:17 final size:16
Alignment explanation
Indices: 82646226--82646258 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
82646216 AGCAAATCTC
82646226 AAAAAAAAAAACAAAA
1 AAAAAAAAAAACAAAA
82646242 AAAAAACAAAAACAAAA
1 AAAAAA-AAAAACAAAA
82646259 CAAACCCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAACAAAA
Found at i:82653247 original size:15 final size:13
Alignment explanation
Indices: 82653200--82653239 Score: 71
Period size: 13 Copynumber: 3.0 Consensus size: 13
82653190 AAATGGAATT
82653200 GAAACGAAAAGAGA
1 GAAAC-AAAAGAGA
82653214 GAAACAAAAGAGA
1 GAAACAAAAGAGA
82653227 GAAACAAAAGAGA
1 GAAACAAAAGAGA
82653240 AAGAAACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 21 0.81
14 5 0.19
ACGTcount: A:0.68, C:0.07, G:0.25, T:0.00
Consensus pattern (13 bp):
GAAACAAAAGAGA
Found at i:82655653 original size:25 final size:25
Alignment explanation
Indices: 82655624--82655677 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
82655614 TGATGGTAAA
** *
82655624 ATGTTATTGCTTTTTGATTAACTTG
1 ATGTTATTGCCATTTGATGAACTTG
*
82655649 ATGTTATTGCCATTTGATGAATTTG
1 ATGTTATTGCCATTTGATGAACTTG
82655674 ATGT
1 ATGT
82655678 GATCTTGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (25 bp):
ATGTTATTGCCATTTGATGAACTTG
Found at i:82659409 original size:38 final size:38
Alignment explanation
Indices: 82659367--82659443 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
82659357 TTATCAAGGT
*
82659367 ATGAAAATAGGCCATAGATTTATCATGCTTGAAATTAG
1 ATGAAAATAGGCCATAGATTTATCATGCTCGAAATTAG
* *
82659405 ATGAAAATAGGCCATGGATTTATTATGCTCGAAATTAG
1 ATGAAAATAGGCCATAGATTTATCATGCTCGAAATTAG
82659443 A
1 A
82659444 AATTTATAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (38 bp):
ATGAAAATAGGCCATAGATTTATCATGCTCGAAATTAG
Found at i:82669206 original size:13 final size:13
Alignment explanation
Indices: 82669188--82669212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82669178 GAGGTAGGAC
82669188 TCTGTATATCTGA
1 TCTGTATATCTGA
82669201 TCTGTATATCTG
1 TCTGTATATCTG
82669213 TTTCTGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (13 bp):
TCTGTATATCTGA
Found at i:82669550 original size:12 final size:13
Alignment explanation
Indices: 82669533--82669566 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
82669523 GGACGGAGAA
82669533 ATTATTTTTA-AT
1 ATTATTTTTATAT
82669545 ATTATTTTTTATAT
1 ATTA-TTTTTATAT
82669559 ATTATTTT
1 ATTATTTT
82669567 ATGTGTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 10 0.50
14 6 0.30
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATTATTTTTATAT
Found at i:82669560 original size:14 final size:13
Alignment explanation
Indices: 82669533--82669566 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
82669523 GGACGGAGAA
82669533 ATTA-TTTTTAAT
1 ATTATTTTTTAAT
82669545 ATTATTTTTTATAT
1 ATTATTTTTTA-AT
82669559 ATTATTTT
1 ATTATTTT
82669567 ATGTGTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.20
13 6 0.30
14 10 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATTATTTTTTAAT
Found at i:82670788 original size:48 final size:48
Alignment explanation
Indices: 82670691--82671065 Score: 461
Period size: 48 Copynumber: 7.8 Consensus size: 48
82670681 TGATATGTGT
* *
82670691 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATT---ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG---GCATTGAGACGAGA
* ** *
82670739 GCTAGTGTAAGACCATGTTTAAGACATGGCATCGGCATTGAGACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
*
82670787 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACTAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
* * * * * *
82670835 GCTAGTGTAAGACCATGTCTGTGACATGGCATCGGCCTCGACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
* * **
82670883 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
* **
82670931 GCTAATGTAAGACCATGTCTAGTTA-ATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCT-GGGACATGGCATCGGCATTGAGACGAGA
* * * * *
82670979 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
82671027 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
82671066 TTACCCTCTT
Statistics
Matches: 280, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
45 4 0.01
47 2 0.01
48 272 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGA
Found at i:82670960 original size:144 final size:144
Alignment explanation
Indices: 82670691--82671065 Score: 583
Period size: 144 Copynumber: 2.6 Consensus size: 144
82670681 TGATATGTGT
* * * *
82670691 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC-ATTATGAGAGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCTAGTGTAAGACCAT
* ** *
82670755 GTTTAAGACATGGCATCGGCATTGAGACAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
65 GTCTGGGACATGGCATCGGCATTGAGACAAGAGCTAATGTAAGACCATGTCTGGGACATGGCATC
*
82670820 GGCATTGAGACTAGA
130 GGCATTGAGACGAGA
* *
82670835 GCTAGTGTAAGACCATGTCTGTGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATG
* * **
82670900 TCTGGGACATGGCATTGGCATTGAGATAAGAGCTAATGTAAGACCATGTCTAGTTA-ATGGCATC
66 TCTGGGACATGGCATCGGCATTGAGACAAGAGCTAATGTAAGACCATGTCT-GGGACATGGCATC
82670964 GGCATTGAGACGAGA
130 GGCATTGAGACGAGA
82670979 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATG
82671044 TCTGGGACATGGCATCGGCATT
66 TCTGGGACATGGCATCGGCATT
82671066 TTACCCTCTT
Statistics
Matches: 211, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
144 208 0.99
145 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (144 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATTGAGACAAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCG
GCATTGAGACGAGA
Found at i:82675849 original size:73 final size:73
Alignment explanation
Indices: 82675769--82675916 Score: 296
Period size: 73 Copynumber: 2.0 Consensus size: 73
82675759 TTTGGAAAAT
82675769 AAATAAATTAAATGAACGCTTTTGTAAATAGATATAAACGAATATGAGTTTTTGAACTTGAATGA
1 AAATAAATTAAATGAACGCTTTTGTAAATAGATATAAACGAATATGAGTTTTTGAACTTGAATGA
82675834 CTTGACAA
66 CTTGACAA
82675842 AAATAAATTAAATGAACGCTTTTGTAAATAGATATAAACGAATATGAGTTTTTGAACTTGAATGA
1 AAATAAATTAAATGAACGCTTTTGTAAATAGATATAAACGAATATGAGTTTTTGAACTTGAATGA
82675907 CTTGACAA
66 CTTGACAA
82675915 AA
1 AA
82675917 TGACTCCGTT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.45, C:0.08, G:0.15, T:0.32
Consensus pattern (73 bp):
AAATAAATTAAATGAACGCTTTTGTAAATAGATATAAACGAATATGAGTTTTTGAACTTGAATGA
CTTGACAA
Found at i:82679578 original size:2 final size:2
Alignment explanation
Indices: 82679571--82679617 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
82679561 TTAGTTGGTA
82679571 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82679613 AT AT A
1 AT AT A
82679618 ACTTAGGGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82682096 original size:48 final size:48
Alignment explanation
Indices: 82682030--82682241 Score: 189
Period size: 48 Copynumber: 4.5 Consensus size: 48
82682020 ATGCTGACGC
* * * *
82682030 CATGTCCCAGACACGTCTTACACTGGCTTGTATATCGCGAGGGCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTATATATCTCGAGGCCGATG
* * * ** * *
82682078 CATGTCCCAAACATGTCTTACACTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTATATATCTCGAGGCCGATG
* * *
82682124 CATGTCCCAGACATGTCTTATACTGGCTTAAATATCTCGAGGCCGACG
1 CATGTCCCAGACATGTCTTACACTGGCTTATATATCTCGAGGCCGATG
* * *** * *
82682172 CATGTCCGAGACATATCTTACACTGGCTCCCATA-CT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTATATATCTCGAGGCCGATG
* *
82682218 CATGTCCTAGCCATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
82682242 AGCACACACA
Statistics
Matches: 130, Mismatches: 32, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
46 62 0.48
47 5 0.04
48 63 0.48
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTGGCTTATATATCTCGAGGCCGATG
Found at i:82682131 original size:94 final size:94
Alignment explanation
Indices: 82682030--82682200 Score: 243
Period size: 94 Copynumber: 1.8 Consensus size: 94
82682020 ATGCTGACGC
** * * *
82682030 CATGTCCCAGACACGTCTTACACTGGCTTGTATATCGCGAGGGCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACACGTCTTACACTGGCTTAAATATCGCGAGGCCGACGCATGTCCCAAACATATC
82682095 TTACACTAGCTCTCGTCTCAATGCCGATG
66 TTACACTAGCTCTCGTCTCAATGCCGATG
* * * * *
82682124 CATGTCCCAGACATGTCTTATACTGGCTTAAATATCTCGAGGCCGACGCATGTCCGAGACATATC
1 CATGTCCCAGACACGTCTTACACTGGCTTAAATATCGCGAGGCCGACGCATGTCCCAAACATATC
*
82682189 TTACACTGGCTC
66 TTACACTAGCTC
82682201 CCATACTGTG
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 66 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (94 bp):
CATGTCCCAGACACGTCTTACACTGGCTTAAATATCGCGAGGCCGACGCATGTCCCAAACATATC
TTACACTAGCTCTCGTCTCAATGCCGATG
Found at i:82682218 original size:94 final size:93
Alignment explanation
Indices: 82682030--82682241 Score: 237
Period size: 94 Copynumber: 2.3 Consensus size: 93
82682020 ATGCTGACGC
* ** * * *
82682030 CATGTCCCAGACACGTCTTACACTGGCTTGTATATCGCGAGGGCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGACGCATGTCCCAAACATATC
* *
82682095 TTACACTAGCTCTCGTCTCAATGCCGATG
66 TTACACTAGCTCCCATCT-AATGCCGATG
* * * *
82682124 CATGTCCCAGACATGTCTTATACTGGCTTAAATATCTCGAGGCCGACGCATGTCCGAGACATATC
1 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGACGCATGTCCCAAACATATC
* * *
82682189 TTACACTGGCTCCCATACT-GTGGCTGATG
66 TTACACTAGCTCCCAT-CTAAT-GCCGATG
* *
82682218 CATGTCCTAGCCATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
82682242 AGCACACACA
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 1 0.01
94 95 0.97
95 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAATATCGCGAGGCCGACGCATGTCCCAAACATATC
TTACACTAGCTCCCATCTAATGCCGATG
Found at i:82688458 original size:21 final size:20
Alignment explanation
Indices: 82688429--82688467 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
82688419 TCCTGTAACA
82688429 GGGCACATGCCCGTGTGGAT
1 GGGCACATGCCCGTGTGGAT
82688449 GGGCAACATGCCCGTGTGG
1 GGGC-ACATGCCCGTGTGG
82688468 TCATTACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.15, C:0.26, G:0.41, T:0.18
Consensus pattern (20 bp):
GGGCACATGCCCGTGTGGAT
Found at i:82689753 original size:48 final size:46
Alignment explanation
Indices: 82689696--82689864 Score: 160
Period size: 48 Copynumber: 3.6 Consensus size: 46
82689686 AAGCTGACGC
* ** *
82689696 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGTCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCT-GAGG-CGATG
* * * *
82689744 CATGTCCCAGACATGTCTTACGCTGGATTAAATATCTTGAGGCCGACG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATC-TGAGG-CGATG
* * *** *
82689792 CATGTCCCAGACTTGTCTTACACTGGCTCCCATA-CTGTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTGAGGC-GATG
82689838 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
82689865 ACACACCTCA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
45 1 0.01
46 32 0.32
47 1 0.01
48 65 0.65
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTGAGGCGATG
Found at i:82691401 original size:47 final size:47
Alignment explanation
Indices: 82691341--82691434 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
82691331 TAAAATGTGG
* *
82691341 CAGAAAAAGATAAAAAAATT-TAAATTAATAAAAATTATTAAAAAATA
1 CAGAAAAAGATAAAAAAATTAAAAATTAAGAAAAA-TATTAAAAAATA
* * *
82691388 CAGAAAAATATAAAAATATTAAAAATTTAGAAAAATATTAAAAAATA
1 CAGAAAAAGATAAAAAAATTAAAAATTAAGAAAAATATTAAAAAATA
82691435 AAATATATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
47 30 0.73
48 11 0.27
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (47 bp):
CAGAAAAAGATAAAAAAATTAAAAATTAAGAAAAATATTAAAAAATA
Found at i:82691403 original size:9 final size:9
Alignment explanation
Indices: 82691368--82691447 Score: 65
Period size: 10 Copynumber: 8.8 Consensus size: 9
82691358 ATTTAAATTA
*
82691368 ATAAAAATT
1 ATAAAAAAT
82691377 ATTAAAAAAT
1 A-TAAAAAAT
*
82691387 ACAGAAAAAT
1 ATA-AAAAAT
82691397 AT-AAAAAT
1 ATAAAAAAT
*
82691405 ATTAAAAAT
1 ATAAAAAAT
*
82691414 TTAGAAAAAT
1 ATA-AAAAAT
*
82691424 ATTAAAAA-
1 ATAAAAAAT
*
82691432 ATAAAATAT
1 ATAAAAAAT
82691441 ATAAAAA
1 ATAAAAA
82691448 TGTAGAAAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
8 14 0.25
9 20 0.36
10 22 0.39
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.26
Consensus pattern (9 bp):
ATAAAAAAT
Found at i:82691404 original size:8 final size:8
Alignment explanation
Indices: 82691391--82691448 Score: 55
Period size: 9 Copynumber: 6.8 Consensus size: 8
82691381 AAAAATACAG
82691391 AAAAATAT
1 AAAAATAT
82691399 AAAAATATT
1 AAAAATA-T
*
82691408 AAAAATTTAG
1 AAAAA--TAT
82691418 AAAAATATT
1 AAAAATA-T
82691427 AAAAA-AT
1 AAAAATAT
82691434 AAAATATAT
1 AAAA-ATAT
82691443 AAAAAT
1 AAAAAT
82691449 GTAGAAAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 5 0.12
8 13 0.31
9 17 0.40
10 5 0.12
11 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.28
Consensus pattern (8 bp):
AAAAATAT
Found at i:82691413 original size:27 final size:29
Alignment explanation
Indices: 82691368--82691431 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 29
82691358 ATTTAAATTA
82691368 ATAAAAATTATTAAAAAATACAGAAAAAT
1 ATAAAAATTATTAAAAAATACAGAAAAAT
**
82691397 ATAAAAA-TATT-AAAAATTTAGAAAAAT
1 ATAAAAATTATTAAAAAATACAGAAAAAT
82691424 ATTAAAAA
1 A-TAAAAA
82691432 ATAAAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 15 0.47
28 10 0.31
29 7 0.22
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (29 bp):
ATAAAAATTATTAAAAAATACAGAAAAAT
Found at i:82691678 original size:10 final size:10
Alignment explanation
Indices: 82691665--82691697 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
82691655 TAAATTATGG
82691665 AAAATATTAAA
1 AAAAT-TTAAA
82691676 AAAATTTAAA
1 AAAATTTAAA
82691686 AAAATTTAAA
1 AAAATTTAAA
82691696 AA
1 AA
82691698 GTTATTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:82691793 original size:9 final size:9
Alignment explanation
Indices: 82691779--82691913 Score: 56
Period size: 9 Copynumber: 13.9 Consensus size: 9
82691769 GTTTTTAGTA
82691779 AATTTTTAT
1 AATTTTTAT
82691788 AATTTTTAT
1 AATTTTTAT
* * *
82691797 ACTATTAAT
1 AATTTTTAT
82691806 AATTTATTAT
1 AATTT-TTAT
82691816 -ATTTTTAAT
1 AATTTTT-AT
*
82691825 AACTTTTAT
1 AATTTTTAT
* *
82691834 ATTTTTTTCT
1 A-ATTTTTAT
* *
82691844 AAAATTTTAG
1 -AATTTTTAT
82691854 ATATTTTTAT
1 A-ATTTTTAT
*
82691864 AAATATTTAAT
1 -AAT-TTTTAT
*
82691875 AATTTATAT
1 AATTTTTAT
*
82691884 ATTTTTCCTAT
1 AATTTT--TAT
*
82691895 ATCTTTTTTAT
1 A--ATTTTTAT
82691906 AATTTTTA
1 AATTTTTA
82691914 ACGCCTTTTA
Statistics
Matches: 92, Mismatches: 22, Indels: 24
0.67 0.16 0.17
Matches are distributed among these distances:
8 2 0.02
9 42 0.46
10 28 0.30
11 15 0.16
13 5 0.05
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (9 bp):
AATTTTTAT
Found at i:82691840 original size:19 final size:19
Alignment explanation
Indices: 82691780--82691839 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
82691770 TTTTTAGTAA
*
82691780 ATTTTT-ATAA-TTTTTAT
1 ATTTTTAATAACTTATTAT
* * *
82691797 ACTATTAATAATTTATTAT
1 ATTTTTAATAACTTATTAT
82691816 ATTTTTAATAACTT-TTAT
1 ATTTTTAATAACTTATTAT
82691834 ATTTTT
1 ATTTTT
82691840 TTCTAAAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
17 4 0.11
18 14 0.40
19 17 0.49
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTTAATAACTTATTAT
Found at i:82691872 original size:20 final size:20
Alignment explanation
Indices: 82691814--82691872 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
82691804 ATAATTTATT
* *
82691814 ATATTTTTAATAACT-TTTAT
1 ATATTTTT-ATAAATATTTAG
* *
82691834 ATTTTTTTCTAAA-ATTTTAG
1 ATATTTTTATAAATA-TTTAG
82691854 ATATTTTTATAAATATTTA
1 ATATTTTTATAAATATTTA
82691873 ATAATTTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 3 0.10
20 26 0.87
21 1 0.03
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (20 bp):
ATATTTTTATAAATATTTAG
Found at i:82692137 original size:18 final size:17
Alignment explanation
Indices: 82692111--82692177 Score: 53
Period size: 18 Copynumber: 3.8 Consensus size: 17
82692101 ATTTAAAATA
*
82692111 ATTTCTATAATTTTAAT
1 ATTTTTATAATTTTAAT
* **
82692128 ATTTTATATATTTTTTGT
1 ATTTT-TATAATTTTAAT
* *
82692146 ATTTTTAATATTTTTAAA
1 ATTTTT-ATAATTTTAAT
*
82692164 ATTTTTATCATTTT
1 ATTTTTATAATTTT
82692178 TTCCACTATG
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
17 11 0.28
18 28 0.72
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (17 bp):
ATTTTTATAATTTTAAT
Found at i:82692160 original size:9 final size:9
Alignment explanation
Indices: 82692121--82692170 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
82692111 ATTTCTATAA
82692121 TTTTAATA-
1 TTTTAATAT
82692129 TTTTATATAT
1 TTTTA-ATAT
**
82692139 TTTTTGTAT
1 TTTTAATAT
82692148 TTTTAATAT
1 TTTTAATAT
*
82692157 TTTTAAAAT
1 TTTTAATAT
82692166 TTTTA
1 TTTTA
82692171 TCATTTTTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
8 5 0.14
9 26 0.74
10 4 0.11
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:82692176 original size:27 final size:27
Alignment explanation
Indices: 82692110--82692178 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
82692100 AATTTAAAAT
* * *
82692110 AATTTCTATAATTTTAATATTTTATAT
1 AATTTTTATATTTTTAATATTTTATAA
* *
82692137 ATTTTTTGTATTTTTAATATTTT-TAA
1 AATTTTTATATTTTTAATATTTTATAA
82692163 AATTTTTATCATTTTT
1 AATTTTTAT-ATTTTT
82692179 TCCACTATGT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 9 0.26
27 25 0.74
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (27 bp):
AATTTTTATATTTTTAATATTTTATAA
Found at i:82696099 original size:3 final size:3
Alignment explanation
Indices: 82696091--82696128 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
82696081 TTGAATTATG
82696091 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
82696129 TGTAAAGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:82699525 original size:16 final size:16
Alignment explanation
Indices: 82699485--82699517 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
82699475 TATTTCTAGA
82699485 TATGGATTTAACGAAT
1 TATGGATTTAACGAAT
82699501 TATGGATTTAACGAAT
1 TATGGATTTAACGAAT
82699517 T
1 T
82699518 CTGTATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.39
Consensus pattern (16 bp):
TATGGATTTAACGAAT
Found at i:82699560 original size:2 final size:2
Alignment explanation
Indices: 82699553--82699587 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
82699543 CTAAAATTAC
*
82699553 AT AT AT AT AT AT AT AT AT AT AT AT -T AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82699588 TTTGAGTACG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:82702478 original size:3 final size:3
Alignment explanation
Indices: 82702470--82702498 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
82702460 CACTCCTAAT
82702470 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
82702499 TTGTTTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:82704416 original size:41 final size:41
Alignment explanation
Indices: 82704371--82704556 Score: 203
Period size: 41 Copynumber: 4.5 Consensus size: 41
82704361 AAATTTAAAC
** *
82704371 AGGGGCATGTATATGTTATTCAAGGGTACCGAAGTACAAAT
1 AGGGGCATGTATATGCAATTCAAGGGTACCAAAGTACAAAT
* * *
82704412 AGGGGCATGTATATGCAATTTAAGGGTACAAAAGTACAAAC
1 AGGGGCATGTATATGCAATTCAAGGGTACCAAAGTACAAAT
* * * *
82704453 AGGGGCATGTATGTACAATACAGGGGTACCAAAGTACAAAT
1 AGGGGCATGTATATGCAATTCAAGGGTACCAAAGTACAAAT
* * * *
82704494 AGGGGCACGTATGTGCAATTTAAGGGTACTGAAA-TACAAAT
1 AGGGGCATGTATATGCAATTCAAGGGTAC-CAAAGTACAAAT
** *
82704535 AGGGGCACATATGTGCAATTCA
1 AGGGGCATGTATATGCAATTCA
82704557 GGATATAATT
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
41 120 0.98
42 3 0.02
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.23
Consensus pattern (41 bp):
AGGGGCATGTATATGCAATTCAAGGGTACCAAAGTACAAAT
Found at i:82704511 original size:82 final size:82
Alignment explanation
Indices: 82704367--82704541 Score: 235
Period size: 82 Copynumber: 2.1 Consensus size: 82
82704357 ATTGAAATTT
*** * * *
82704367 AAACAGGGGCATGTATATGTTATTCAAGGGTACCGAAGTACAAATAGGGGCATGTATATGCAATT
1 AAACAGGGGCATGTATATACAATACAAGGGTACCAAAGTACAAATAGGGGCACGTATATGCAATT
82704432 TAAGGGTAC-AAAAGTAC
66 TAAGGGTACTAAAA-TAC
* * *
82704449 AAACAGGGGCATGTATGTACAATACAGGGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATT
1 AAACAGGGGCATGTATATACAATACAAGGGTACCAAAGTACAAATAGGGGCACGTATATGCAATT
*
82704514 TAAGGGTACTGAAATAC
66 TAAGGGTACTAAAATAC
*
82704531 AAATAGGGGCA
1 AAACAGGGGCA
82704542 CATATGTGCA
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
82 78 0.96
83 3 0.04
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (82 bp):
AAACAGGGGCATGTATATACAATACAAGGGTACCAAAGTACAAATAGGGGCACGTATATGCAATT
TAAGGGTACTAAAATAC
Found at i:82704548 original size:82 final size:82
Alignment explanation
Indices: 82704394--82704558 Score: 233
Period size: 82 Copynumber: 2.0 Consensus size: 82
82704384 TGTTATTCAA
* *
82704394 GGGTACCGAAGTACAAATAGGGGCATGTATATGCAATTTAAGGGTACAAAAGTACAAACAGGGGC
1 GGGTACCAAAGTACAAATAGGGGCACGTATATGCAATTTAAGGGTACAAAAGTACAAACAGGGGC
**
82704459 ATGTATGTACAATACAG
66 ACATATGTACAATACAG
* * *
82704476 GGGTACCAAAGTACAAATAGGGGCACGTATGTGCAATTTAAGGGTACTGAAA-TACAAATAGGGG
1 GGGTACCAAAGTACAAATAGGGGCACGTATATGCAATTTAAGGGTAC-AAAAGTACAAACAGGGG
* *
82704540 CACATATGTGCAATTCAG
65 CACATATGTACAATACAG
82704558 G
1 G
82704559 ATATAATTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
82 70 0.96
83 3 0.04
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (82 bp):
GGGTACCAAAGTACAAATAGGGGCACGTATATGCAATTTAAGGGTACAAAAGTACAAACAGGGGC
ACATATGTACAATACAG
Found at i:82715728 original size:20 final size:20
Alignment explanation
Indices: 82715686--82715732 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
82715676 TAGGGACATA
* *
82715686 GGCGTGTCCCAAGCCATATG
1 GGCGTGTCCCAAGCCACACG
*
82715706 GGCGTGTCCCAAGCCGCACG
1 GGCGTGTCCCAAGCCACACG
82715726 GGCGTGT
1 GGCGTGT
82715733 GACCCCTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.15, C:0.32, G:0.36, T:0.17
Consensus pattern (20 bp):
GGCGTGTCCCAAGCCACACG
Found at i:82722181 original size:16 final size:16
Alignment explanation
Indices: 82722150--82722194 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
82722140 AAATATCGTA
82722150 AATTAATTT-T-AATT
1 AATTAATTTCTCAATT
82722164 AATTAATTTCTCAATT
1 AATTAATTTCTCAATT
*
82722180 AAATAATTTTCTCAA
1 AATTAA-TTTCTCAA
82722195 CTTGATTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.33
15 1 0.04
16 9 0.33
17 8 0.30
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTAATTTCTCAATT
Found at i:82722192 original size:17 final size:16
Alignment explanation
Indices: 82722148--82722194 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
82722138 ATAAATATCG
82722148 TAAATTAATTT-T-AAT
1 TAAA-TAATTTCTCAAT
*
82722163 TAATTAATTTCTCAAT
1 TAAATAATTTCTCAAT
82722179 TAAATAATTTTCTCAA
1 TAAATAA-TTTCTCAA
82722195 CTTGATTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 6 0.22
15 4 0.15
16 9 0.33
17 8 0.30
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (16 bp):
TAAATAATTTCTCAAT
Found at i:82723961 original size:46 final size:46
Alignment explanation
Indices: 82723911--82724027 Score: 125
Period size: 46 Copynumber: 2.5 Consensus size: 46
82723901 GACGAGTGGT
*
82723911 AGTGTAAGACATGTCTGGGACATG-TATCGGCCT-CGAGAT-TTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCT-TCGG-CTACGAGATGAT-AGCC
* *
82723957 AGTGTAAGACATGT-TAGGGACATGCTTCGGCTATGAGATGATAGTC
1 AGTGTAAGACATGTCT-GGGACATGCTTCGGCTACGAGATGATAGCC
*
82724003 AGAGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
82724028 GCATCAACTT
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
45 3 0.05
46 42 0.69
47 15 0.25
48 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCTTCGGCTACGAGATGATAGCC
Found at i:82731525 original size:46 final size:47
Alignment explanation
Indices: 82731467--82731636 Score: 138
Period size: 46 Copynumber: 3.6 Consensus size: 47
82731457 TCACTTGTGT
82731467 GAGCTAGTGTAAGACATGTATGGGACATGCATCAGCCACATTATG-A
1 GAGCTAGTGTAAGACATGTATGGGACATGCATCAGCCACATTATGAA
* **
82731513 GAGCCAGTGTAAGACTATGTCCGGGACATGGCATC-G--ACATTGA-GACAA
1 GAGCTAGTGTAAGAC-ATGTATGGGACAT-GCATCAGCCACATT-ATG--AA
* * * * * * *
82731561 GTGCTAGTGTAAGACATGTCTAGGACATGCATTAGCCTCGA-GATGTA
1 GAGCTAGTGTAAGACATGTATGGGACATGCATCAGCCAC-ATTATGAA
*
82731608 -AGCTAGTGTAAAACATGTATGGGACATGC
1 GAGCTAGTGTAAGACATGTATGGGACATGC
82731637 TTCGGCTACG
Statistics
Matches: 98, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
45 6 0.06
46 44 0.45
47 25 0.26
48 20 0.20
49 2 0.02
50 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACATGTATGGGACATGCATCAGCCACATTATGAA
Found at i:82731682 original size:47 final size:46
Alignment explanation
Indices: 82731513--82731734 Score: 135
Period size: 47 Copynumber: 4.7 Consensus size: 46
82731503 CACATTATGA
* * * * * *
82731513 GAGCCAGTGTAAGACTATGTCCGGGACATGGCATCGACATTGAGACAA
1 GAGCCAGAGTAAGACCATGTCTGGGACAT-GCATCGA-ATCGAGATAT
* * * * * ** *
82731561 GTGCTAGTGTAAGA-CATGTCTAGGACATGCATTAGCCTCGAGATGT
1 GAGCCAGAGTAAGACCATGTCTGGGACATGCA-TCGAATCGAGATAT
* * * * * * **
82731607 AAGCTAGTGTAA-AACATGTATGGGACATGCTTCGGCTACGAGATGAT
1 GAGCCAGAGTAAGACCATGTCTGGGACATGCATCGAAT-CGAGAT-AT
* *
82731654 -AGTCAGAGTAAGACCATGTCTGGGACATGGCATCGAATTGAGATAT
1 GAGCCAGAGTAAGACCATGTCTGGGACAT-GCATCGAATCGAGATAT
*
82731700 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGAGTAAGACCATGTCTGGGACAT-GCATC
82731735 ATCACCTTAC
Statistics
Matches: 136, Mismatches: 31, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
45 5 0.04
46 48 0.35
47 65 0.48
48 18 0.13
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGAGTAAGACCATGTCTGGGACATGCATCGAATCGAGATAT
Found at i:82731720 original size:140 final size:140
Alignment explanation
Indices: 82731468--82731729 Score: 357
Period size: 140 Copynumber: 1.9 Consensus size: 140
82731458 CACTTGTGTG
* * * *
82731468 AGCTAGTGTAAGACATGTATGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACTATGT
1 AGCTAGTGTAAAACATGTATGGGACATGCATCAGCCACATGATGAGAGCCAGAGTAAGACCATGT
* *
82731533 CCGGGACATGGCATCGACATTGAGACAAGTGCTAGTGTAAGACATGTCTAGGACATGCATTAGCC
66 CCGGGACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGCATTAGCC
82731598 TCGAGATGTA
131 TCGAGATGTA
* * * * *
82731608 AGCTAGTGTAAAACATGTATGGGACATGCTTCGGCTACGA-GATGATAGTCAGAGTAAGACCATG
1 AGCTAGTGTAAAACATGTATGGGACATGCATCAGCCAC-ATGATGAGAGCCAGAGTAAGACCATG
* * * *
82731672 TCTGGGACATGGCATCGA-ATTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATG
65 TCCGGGACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGA-CATGTCTAGGACATG
82731730 GCATCATCAC
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
139 20 0.19
140 84 0.80
141 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (140 bp):
AGCTAGTGTAAAACATGTATGGGACATGCATCAGCCACATGATGAGAGCCAGAGTAAGACCATGT
CCGGGACATGGCATCGACATTGAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGCATTAGCC
TCGAGATGTA
Found at i:82734783 original size:13 final size:14
Alignment explanation
Indices: 82734752--82734783 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
82734742 AGTGTATTTT
82734752 ATTT-ATTAAATGA
1 ATTTAATTAAATGA
82734765 ATTTAATTAAAT-A
1 ATTTAATTAAATGA
82734778 ATTTAA
1 ATTTAA
82734784 AGTAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
ATTTAATTAAATGA
Found at i:82734967 original size:23 final size:22
Alignment explanation
Indices: 82734917--82734967 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
82734907 TAGAATTTGA
82734917 ATTTTATATTTTTATTTTTAGG
1 ATTTTATATTTTTATTTTTAGG
*
82734939 AATTTAGT-TTTTCTATTGTTTA-G
1 ATTTTA-TATTTT-TATT-TTTAGG
82734962 ATTTTA
1 ATTTTA
82734968 AAATTCAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
22 9 0.38
23 11 0.46
24 4 0.17
ACGTcount: A:0.24, C:0.02, G:0.10, T:0.65
Consensus pattern (22 bp):
ATTTTATATTTTTATTTTTAGG
Found at i:82736037 original size:13 final size:13
Alignment explanation
Indices: 82736019--82736043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82736009 TATAAATTCT
82736019 ATTATTAATATAC
1 ATTATTAATATAC
82736032 ATTATTAATATA
1 ATTATTAATATA
82736044 TATAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTATTAATATAC
Done.