Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 29 of 427
Found at i:7564598 original size:64 final size:64
Alignment explanation
Indices: 7564525--7564734 Score: 144
Period size: 64 Copynumber: 3.2 Consensus size: 64
7564515 CTGGGCCAGA
*
7564525 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * ** * ** *
7564589 GCCCATTTCAAAATAATGCAACATCAGTAACATATG-C-AAG-CCC--ATTTGGGTAACAGTGGT
1 GCCCATTTC-AGAT--TAC-A-AT-A--AAC-TGGGCCTTAGCCCCTTATTCAGATAACA---GT
* *
7564649 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
7564660 GCCCTTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCC-ATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
7564725 GCCCATTTCA
1 GCCCATTTCA
7564735 AAATACATGC
Statistics
Matches: 103, Mismatches: 23, Indels: 40
0.62 0.14 0.24
Matches are distributed among these distances:
63 2 0.02
64 24 0.23
65 12 0.12
66 4 0.04
67 4 0.04
68 20 0.19
69 4 0.04
70 4 0.04
71 12 0.12
72 15 0.15
73 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:7564734 original size:136 final size:137
Alignment explanation
Indices: 7564491--7564776 Score: 522
Period size: 136 Copynumber: 2.1 Consensus size: 137
7564481 CATTGGGCCT
**
7564491 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
7564556 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATA-ATGCAACATCAGTAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
7564620 ATATGC-
131 ATATGCA
7564626 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTTCAGATTACAATAAACTGGGCCT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCC-TTTTCAGATTACAATAAACTGGGCCT
7564691 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
65 TAGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAA
7564756 CATATGCA
130 CATATGCA
7564764 AAGCCCATTTGGG
1 AAGCCCATTTGGG
7564777 GAGACTACTC
Statistics
Matches: 145, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
135 36 0.25
136 75 0.52
137 21 0.14
138 13 0.09
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGCA
Found at i:7564974 original size:832 final size:833
Alignment explanation
Indices: 7563370--7565034 Score: 3126
Period size: 832 Copynumber: 2.0 Consensus size: 833
7563360 AACAGTTAAA
7563370 ATAAGTATTACCTATCTTAGTAATACATATTAAAAACCATCAAAAATAAATAAGCGGCCTTATTA
1 ATAAGTATTACCTATCTTAGTAATACATATTAAAAACCATCAAAAATAAATAAGCGGCCTTATTA
*
7563435 CATTTAAAAGCCCAAAACCTCAAACGTAATTAAAAGGATGTCCAGTTCACCAGAAGAAAATCAAA
66 CATTTAAAAGCCCAAAACCTCAAACGTAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAAA
7563500 CTTTCAGAACGGGTGGCCACTCCGAATTCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTC
131 CTTTCAGAACGGGTGGCCACTCCGAATTCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTC
7563565 CTGCGTGGATGAAAATAAAAGGGTGAGTTTGGGGAAACTCAGTGTGTAAGGAAAACCCATTCAAA
196 CTGCGTGGATGAAAATAAAAGGGTGAGTTTGGGGAAACTCAGTGTGTAAGGAAAACCCATTCAAA
*
7563630 GCCCAAGTCAGCTCAAGCCTATTGGGCCTAAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGC
261 GCCCAAGTCAGCTCAAGCCCATTGGGCCTAAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGC
7563695 CCTTTTCAGATTACAATAAACTGGGCCTTAGCCCTTATTCAGATAACAGTATGGCCCATAGGCCC
326 CCTTTTCAGATTACAATAAACTGGGCCTTAGCCCTTATTCAGATAACAGTATGGCCCATAGGCCC
7563760 ATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGGTAACAGTGATACTGGGCC
391 ATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGGTAACAGTGATACTGGGCC
7563825 AAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCAT
456 AAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCAT
*
7563890 AGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGGGAGACTACTCA
521 AGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCATTTGGGGAGACTACTCA
7563955 ACCCACCAACCACTACACTCCACCCGTACCAGCCATACACTCCATGTGGGGAATAGCTCAACCCA
586 ACCCACCAACCACTACACTCCACCCGTACCAGCCATACACTCCATGTGGGGAATAGCTCAACCCA
*
7564020 CCCAGCCCAACACTCCACAGTTGCAGCCTTGCTGCTCAGTTAACAGTAAATTGAGGCAAAGCCTC
651 CCCAGCCCAACACTCCACAGTTGCAGCATTGCTGCTCAGTTAACAGTAAATTGAGGCAAAGCCTC
* *
7564085 TAGTACGTGGACAATCCACTTTCAGTACTTCCTCCGTCAATATCCCAGTCCCATGCATCAGATAA
716 CAGTACGTGGACAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAGTCCCATGCATCAGATAA
7564150 TAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAGGTCAAT
781 TAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAGGTCAAT
*
7564203 ATAAGTATTACCTATCTTAGTAATACATATT-AAAACCAT-AAAAATAATTAAGCGGCCTTATTA
1 ATAAGTATTACCTATCTTAGTAATACATATTAAAAACCATCAAAAATAAATAAGCGGCCTTATTA
* *
7564266 CATTTAAAAGCCCCAAAACTTGAAACGTAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAA
66 CATTTAAAAG-CCCAAAACCTCAAACGTAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAA
7564331 ACTTTCAGAAC-GGTGGCCACTCCGAATTCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTT
130 ACTTTCAGAACGGGTGGCCACTCCGAATTCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTT
7564395 CCTGCGTGGATGAAAATAAAAGGGGTGAGTTTGGGGAAACTCAGTGTGTAAGGAAAACCCATTCA
195 CCTGCGTGGATGAAAATAAAA-GGGTGAGTTTGGGGAAACTCAGTGTGTAAGGAAAACCCATTCA
*
7564460 AAGTCCAAGTCAGCTCAAGCCCATTGGGCCTAAGCCCATTCAGGTAACAGTGGTACTGGGCCAGA
259 AAGCCCAAGTCAGCTCAAGCCCATTGGGCCTAAGCCCATTCAGGTAACAGTGGTACTGGGCCAGA
7564525 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAGG
324 GCCCTTTTCAGATTACAATAAACTGGGCCTTAG-CCCTTATTCAGATAACAGTATGGCCCATAGG
* *
7564590 CCCATTTCAAAATA-ATGCAACATCAGTAACATATGCAAGCCCATTTGGGTAACAGTGGTACTGG
388 CCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGGTAACAGTGATACTGG
*
7564654 GCCAGAGCCCTTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGC
453 GCCAAAGCCC-TTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGC
7564719 CCATAGGCCCATTTCAAAATACATGCAACATCAAT-AACATATGCAAAGCCCATTTGGGGAGACT
517 CCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGC-AAGCCCATTTGGGGAGACT
7564783 ACTCAACCCACCAACCACTACACTCCACCCGTACCAGCCATACACTCCATGTGGGG-ATAGCTCA
581 ACTCAACCCACCAACCACTACACTCCACCCGTACCAGCCATACACTCCATGTGGGGAATAGCTCA
7564847 ACCCACCCAGCCCAACACTCCACAGTTGCAGCATTGCTGCTCAGTTAACAGTAAATTGAGGCAAA
646 ACCCACCCAGCCCAACACTCCACAGTTGCAGCATTGCTGCTCAGTTAACAGTAAATTGAGGCAAA
7564912 GCCTCCAGTACGTGGACAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAGTCCCATGCATCA
711 GCCTCCAGTACGTGGACAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAGTCCCATGCATCA
7564977 GATAATAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAGGTCAAT
776 GATAATAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAGGTCAAT
7565035 TTAACCCTAG
Statistics
Matches: 814, Mismatches: 13, Indels: 11
0.97 0.02 0.01
Matches are distributed among these distances:
831 107 0.13
832 468 0.57
833 239 0.29
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (833 bp):
ATAAGTATTACCTATCTTAGTAATACATATTAAAAACCATCAAAAATAAATAAGCGGCCTTATTA
CATTTAAAAGCCCAAAACCTCAAACGTAAATAAAAGGATGTCCAGTTCACCAGAAGAAAATCAAA
CTTTCAGAACGGGTGGCCACTCCGAATTCCCTCACAGCTCCAAGCCCACTATGGTTGGGGATTTC
CTGCGTGGATGAAAATAAAAGGGTGAGTTTGGGGAAACTCAGTGTGTAAGGAAAACCCATTCAAA
GCCCAAGTCAGCTCAAGCCCATTGGGCCTAAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGC
CCTTTTCAGATTACAATAAACTGGGCCTTAGCCCTTATTCAGATAACAGTATGGCCCATAGGCCC
ATTTCAAAATACATGCAACATCAATAACATATGCAAGCCCATTTGGGTAACAGTGATACTGGGCC
AAAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCAT
AGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCATTTGGGGAGACTACTCA
ACCCACCAACCACTACACTCCACCCGTACCAGCCATACACTCCATGTGGGGAATAGCTCAACCCA
CCCAGCCCAACACTCCACAGTTGCAGCATTGCTGCTCAGTTAACAGTAAATTGAGGCAAAGCCTC
CAGTACGTGGACAAGCCACTTTCAGTACTTCCTCCGTCAATATCCCAGTCCCATGCATCAGATAA
TAACAACATGGCATGCAGTAAATAACAACAGTCAAACATGCATTTAGGTCAAT
Found at i:7566589 original size:26 final size:26
Alignment explanation
Indices: 7566553--7566636 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
7566543 ACATGAATTC
7566553 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7566579 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7566605 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7566631 TTATCA
1 TTATCA
7566637 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7567602 original size:40 final size:40
Alignment explanation
Indices: 7567523--7567603 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
7567513 AAGGTTTGTA
7567523 GCTGAAGAAGGCCATATATAGCCTAAAATAGGCACCAAGAG
1 GCTGAAGAAGGCCA-ATATAGCCTAAAATAGGCACCAAGAG
7567564 GCTGAAGAAGGCC-ATATAGCCTAAAAATAGGCACCAAGAG
1 GCTGAAGAAGGCCAATATAGCCT-AAAATAGGCACCAAGAG
7567604 TCTGGTATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
39 9 0.23
40 17 0.44
41 13 0.33
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.14
Consensus pattern (40 bp):
GCTGAAGAAGGCCAATATAGCCTAAAATAGGCACCAAGAG
Found at i:7569092 original size:3 final size:3
Alignment explanation
Indices: 7569069--7569146 Score: 72
Period size: 3 Copynumber: 26.3 Consensus size: 3
7569059 AATATTCTTG
* * * *
7569069 TTA TT- TTA -TA TTA TTA GTA TTA TTA CTA CTA CTCTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -T-TA TTA TTA TTA
*
7569114 TTA TTA TTA TTA -TA TTA ATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7569147 CATATATATA
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
2 6 0.10
3 54 0.87
5 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:7569135 original size:23 final size:25
Alignment explanation
Indices: 7569075--7569189 Score: 97
Period size: 26 Copynumber: 4.2 Consensus size: 25
7569065 CTTGTTATTT
* *
7569075 TATATTATTAGTATTATTACTACTACTC
1 TATATTATTATTATTATTA-TA-TA-TA
7569103 TACTATTATTATTATTATTAT-TATA
1 TA-TATTATTATTATTATTATATATA
*
7569128 TTAATATTATTATTATTATCATATATA
1 -T-ATATTATTATTATTATTATATATA
*
7569155 TATATATATTAGTATATATGTATATATTA
1 TATAT-TATTATTAT-TAT-TATATA-TA
7569184 TATATT
1 TATATT
7569190 TTACGTATAG
Statistics
Matches: 74, Mismatches: 5, Indels: 16
0.78 0.05 0.17
Matches are distributed among these distances:
25 5 0.07
26 29 0.39
27 8 0.11
28 9 0.12
29 23 0.31
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (25 bp):
TATATTATTATTATTATTATATATA
Found at i:7569155 original size:2 final size:2
Alignment explanation
Indices: 7569148--7569188 Score: 50
Period size: 2 Copynumber: 21.0 Consensus size: 2
7569138 TATTATTATC
*
7569148 AT AT AT AT AT AT AT AT -T AGT AT AT AT GT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
7569189 TTTACGTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 2 0.06
2 30 0.88
3 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7569503 original size:19 final size:18
Alignment explanation
Indices: 7569475--7569514 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7569465 GTTACATACG
* *
7569475 TATATGTTATGTGTATTTA
1 TATATATTATGTATA-TTA
7569494 TATATATTATGTATATTA
1 TATATATTATGTATATTA
7569512 TAT
1 TAT
7569515 CTTTATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (18 bp):
TATATATTATGTATATTA
Found at i:7569585 original size:21 final size:21
Alignment explanation
Indices: 7569561--7569620 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
7569551 GTATTATTCG
*
7569561 TTTATTATATATGTA-TATATC
1 TTTATTATATAT-AAGTATATC
*
7569582 TTTAATATATATAAGTATATC
1 TTTATTATATATAAGTATATC
*
7569603 TTTATGTA-ATATTAGTAT
1 TTTAT-TATATATAAGTAT
7569621 TATTTTTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 30 0.91
22 2 0.06
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (21 bp):
TTTATTATATATAAGTATATC
Found at i:7569632 original size:18 final size:19
Alignment explanation
Indices: 7569609--7569648 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
7569599 TATCTTTATG
*
7569609 TAATATTAGTAT-TATTTT
1 TAATATTAATATGTATTTT
*
7569627 TAATATTAATATGTTTTTT
1 TAATATTAATATGTATTTT
7569646 TAA
1 TAA
7569649 CATTGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TAATATTAATATGTATTTT
Found at i:7571673 original size:99 final size:99
Alignment explanation
Indices: 7571523--7571733 Score: 358
Period size: 99 Copynumber: 2.1 Consensus size: 99
7571513 GGGCCTTAGC
7571523 CCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATA
1 CCCTTATTCAGATAACAGTA-GGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATA
7571588 TGCAAGCCCATTTGGGTAACAGTGGTACTGGGCCAGA-
65 TGCAAGCCCA-TTGGGTAACAGT-GTACT-GGCCAGAG
7571625 CCCTTATTCAGATAACAGTA-GCCCATAGG-CCATTTCAAAATACATGCAACATCAATAACATAT
1 CCCTTATTCAGATAACAGTAGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATAT
7571688 GCAAGCCCATTGGGTAACAGTGTACTGGCCAGAG
66 GCAAGCCCATTGGGTAACAGTGTACTGGCCAGAG
7571722 CCCTT-TTCAGAT
1 CCCTTATTCAGAT
7571734 TACAATAAAC
Statistics
Matches: 108, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
96 14 0.13
97 10 0.09
98 12 0.11
99 43 0.40
100 9 0.08
102 20 0.19
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (99 bp):
CCCTTATTCAGATAACAGTAGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATAT
GCAAGCCCATTGGGTAACAGTGTACTGGCCAGAG
Found at i:7571889 original size:21 final size:21
Alignment explanation
Indices: 7571843--7571890 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7571833 TTGGGAGACT
*
7571843 ACTCAACCCACCAACCACTAC
1 ACTCCACCCACCAACCACTAC
*
7571864 ACTCCACCCTACCAGCCA-TAC
1 ACTCCACCC-ACCAACCACTAC
7571885 ACTCCA
1 ACTCCA
7571891 TGGAATAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCACCAACCACTAC
Found at i:7573558 original size:25 final size:26
Alignment explanation
Indices: 7573489--7573622 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
7573479 CATGAAATTC
7573489 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7573515 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
7573541 TTATCATG-AACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7573566 TTATCATGAAACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7573591 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7573617 TTATCA
1 TTATCA
7573623 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
25 47 0.46
26 55 0.54
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7573569 original size:51 final size:50
Alignment explanation
Indices: 7573489--7573622 Score: 232
Period size: 51 Copynumber: 2.6 Consensus size: 50
7573479 CATGAAATTC
*
7573489 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTATTATCATGAAACATTTACCTAA-CCA
7573541 TTATCATGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA
1 TTATCATGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA
7573591 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCAT-GAACATTTACCTAACCTATTATCA
7573623 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
50 10 0.12
51 62 0.77
52 8 0.10
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.34
Consensus pattern (50 bp):
TTATCATGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA
Found at i:7577443 original size:64 final size:64
Alignment explanation
Indices: 7577369--7577585 Score: 152
Period size: 64 Copynumber: 3.3 Consensus size: 64
7577359 CTAGGCCAGA
* *
7577369 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCACCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCACCTTATTCAGATAACAGTATGGCCCATAG
***** * * ** *
7577433 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCC-CATTTGGGTAACAGTGGTAC
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC-A-CCTTATTCAGATAACA---GTA-
* *
7577496 TGGGCCAGA-
55 TGGCCCATAG
* * * *
7577505 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCACCTTATTCAGATAACAGTATGGCCCATAG
7577569 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
7577586 TGCAACATCA
Statistics
Matches: 106, Mismatches: 33, Indels: 28
0.63 0.20 0.17
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 2 0.02
66 3 0.03
67 13 0.12
68 4 0.04
69 14 0.13
70 3 0.03
71 2 0.02
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCACCTTATTCAGATAACAGTATGGCCCATAG
Found at i:7577579 original size:136 final size:136
Alignment explanation
Indices: 7577335--7577619 Score: 516
Period size: 136 Copynumber: 2.1 Consensus size: 136
7577325 TATTGGGCCT
**
7577335 AAGCCCATTCAGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
*
7577400 AGCACCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCACCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
7577465 ATATGC
131 ATATGC
* *
7577471 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
*
7577536 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
66 AGCACCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
7577601 ATATGC
131 ATATGC
7577607 AAGCCCATTTGGG
1 AAGCCCATTTGGG
7577620 GAGACTACTC
Statistics
Matches: 143, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 143 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTAGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCACCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
ATATGC
Found at i:7577655 original size:21 final size:21
Alignment explanation
Indices: 7577626--7577673 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7577616 TGGGGAGACT
*
7577626 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
7577647 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
7577668 ACTCCA
1 ACTCCA
7577674 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:7577927 original size:26 final size:27
Alignment explanation
Indices: 7577883--7577958 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 27
7577873 TCAATTTAAC
* * *
7577883 CCTAGGGGTATTTCGGTAATTTTGC-A
1 CCTAGGGGTATTACAGTAATTTTCCAA
*
7577909 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATTACAGTAATTTTCCA-A
* *
7577937 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATTACAGTAATTT
7577959 AGCTGCTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.51
28 20 0.49
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (27 bp):
CCTAGGGGTATTACAGTAATTTTCCAA
Found at i:7579435 original size:26 final size:26
Alignment explanation
Indices: 7579399--7579533 Score: 234
Period size: 26 Copynumber: 5.2 Consensus size: 26
7579389 CATGAAATTC
7579399 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7579425 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7579451 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7579477 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7579503 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7579529 TTATC
1 TTATC
7579534 GATTTGTATC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7583110 original size:43 final size:43
Alignment explanation
Indices: 7583049--7583136 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
7583039 ACAATAACTT
7583049 CAATGGCTACTTACCTATCAGGTTTTTTTGAGAATTTACATGC
1 CAATGGCTACTTACCTATCAGGTTTTTTTGAGAATTTACATGC
7583092 CAATGGCTACTTACCTATCAGGTTTTTTTGAGAATTTACATGC
1 CAATGGCTACTTACCTATCAGGTTTTTTTGAGAATTTACATGC
7583135 CA
1 CA
7583137 TTAAAAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (43 bp):
CAATGGCTACTTACCTATCAGGTTTTTTTGAGAATTTACATGC
Found at i:7594110 original size:91 final size:91
Alignment explanation
Indices: 7593955--7594122 Score: 273
Period size: 91 Copynumber: 1.8 Consensus size: 91
7593945 AAATTAGCTA
* *
7593955 TTAAGCATATGAGTTAATATGTCATGTCATTAGTCCATTACTGAGTCAACACATAAATGACTAAA
1 TTAAGCATATGAGTTAATATGTCATGTCATTAATCCATTACTGAGTCAACACACAAATGACTAAA
7594020 ATGTTACAAATATGTCATGTCATTAG
66 ATGTTACAAATATGTCATGTCATTAG
* * * *
7594046 TTAAGCATATGAGTTAATGTGTCATGTTATTAATCTATTACTGAGTCAACACACAAGTGACTAAA
1 TTAAGCATATGAGTTAATATGTCATGTCATTAATCCATTACTGAGTCAACACACAAATGACTAAA
*
7594111 ATGTTACGAATA
66 ATGTTACAAATA
7594123 GAAAATATCA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 70 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.34
Consensus pattern (91 bp):
TTAAGCATATGAGTTAATATGTCATGTCATTAATCCATTACTGAGTCAACACACAAATGACTAAA
ATGTTACAAATATGTCATGTCATTAG
Found at i:7595587 original size:17 final size:17
Alignment explanation
Indices: 7595560--7595594 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7595550 AAAAAAGTGA
7595560 ATATGCCATAT-CAAAT
1 ATATGCCATATACAAAT
7595576 ATATGTCCATATACAAAT
1 ATATG-CCATATACAAAT
7595594 A
1 A
7595595 CTCATGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 6 0.35
18 6 0.35
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (17 bp):
ATATGCCATATACAAAT
Found at i:7598266 original size:24 final size:24
Alignment explanation
Indices: 7598221--7598267 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7598211 TAAAAAACTA
*
7598221 AACCCCAAAACTTGAAAAACAAAG
1 AACCCCAAAACGTGAAAAACAAAG
*
7598245 AACCCTCAAAACGT-AAACACAAA
1 AACCC-CAAAACGTGAAAAACAAA
7598268 ATTCTCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.57, C:0.28, G:0.06, T:0.09
Consensus pattern (24 bp):
AACCCCAAAACGTGAAAAACAAAG
Found at i:7599178 original size:2 final size:2
Alignment explanation
Indices: 7599171--7599217 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7599161 GAGCTCAATA
7599171 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7599213 AT AT A
1 AT AT A
7599218 ATTCTTAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7600425 original size:3 final size:3
Alignment explanation
Indices: 7600417--7600720 Score: 140
Period size: 3 Copynumber: 99.7 Consensus size: 3
7600407 TAATTTAATC
* * * * *
7600417 TAT TAT TAT TACT CAT TAT T-T CAC TAT TAT TGT CTAA TA- TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* * *
7600462 CAT TAT CAC TAT TAAT GTAT TA- TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
7600508 TAT TAT TAT TAT TAC CCT TAT TAA TA- TAT TAT TAT TAT CAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * *
7600553 TAC TAT TAT TAT TAGT AAT CTAT TAC TAT TCGT GTAT TGT TATT TCT
1 TAT TAT TAT TAT TA-T TAT -TAT TAT TAT T-AT -TAT TAT TA-T TAT
* * * * *
7600600 TAT TTT TCA- TAT TAT TGT TGT TAT TAG TAT ATAT TGT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* * * * *
7600646 T-T CCTAT TAT TAT TAT TAT TAT TAC TAA TAT CAC TAT TAT CAT T-T
1 TAT --TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
7600691 T-T TAT TAC TGT TAT TAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7600721 CTTACTATCT
Statistics
Matches: 222, Mismatches: 57, Indels: 44
0.69 0.18 0.14
Matches are distributed among these distances:
2 15 0.07
3 182 0.82
4 22 0.10
5 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7600707 original size:22 final size:23
Alignment explanation
Indices: 7600680--7600722 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
7600670 CTAATATCAC
7600680 TATTATCATTTT-TTATTACTGT
1 TATTATCATTTTATTATTACTGT
*
7600702 TATTATTATTTTATTATTACT
1 TATTATCATTTTATTATTACT
7600723 TACTATCTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (23 bp):
TATTATCATTTTATTATTACTGT
Found at i:7601922 original size:26 final size:26
Alignment explanation
Indices: 7601885--7602020 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
7601875 TGATACAAAT
* *
7601885 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7601911 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
7601937 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7601963 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7601989 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7602015 TGATAA
1 TGATAA
7602021 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7604038 original size:136 final size:136
Alignment explanation
Indices: 7603794--7604349 Score: 1051
Period size: 136 Copynumber: 4.1 Consensus size: 136
7603784 GAGTAGTCTC
*
7603794 CCCAAATGGGCTTGCATATGTTATTGATGTTGGATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
7603859 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7603924 CTGTTA
131 CTGTTA
*
7603930 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
7603995 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7604060 CTGTTA
131 CTGTTA
7604066 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
7604131 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7604196 CTGTTA
131 CTGTTA
7604202 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
* *
7604267 GTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7604331 CTGTTA
131 CTGTTA
**
7604337 CCTGAATGGGCTT
1 CCCAAATGGGCTT
7604350 AGGCCCAATA
Statistics
Matches: 413, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
135 66 0.16
136 347 0.84
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:7608083 original size:26 final size:26
Alignment explanation
Indices: 7608046--7608181 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
7608036 TGATACAAAT
* *
7608046 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7608072 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
7608098 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7608124 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7608150 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
7608176 TGATAA
1 TGATAA
7608182 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:7610210 original size:136 final size:136
Alignment explanation
Indices: 7609967--7610522 Score: 1042
Period size: 136 Copynumber: 4.1 Consensus size: 136
7609957 GAGTAGTCTC
7609967 CCCAAATGGGCTTGCATATGTTATTGATGTTG-ATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
7610031 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7610096 CTGTTA
131 CTGTTA
* *
7610102 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATAGGCCTTTGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
7610167 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7610232 CTGTTA
131 CTGTTA
7610238 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
7610303 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7610368 CTGTTA
131 CTGTTA
7610374 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
* * *
7610439 GTTATCTGAATAAGGCGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCTAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
7610504 CTGTTA
131 CTGTTA
**
7610510 CCTGAATGGGCTT
1 CCCAAATGGGCTT
7610523 AGGCCCAATA
Statistics
Matches: 411, Mismatches: 9, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
135 32 0.08
136 379 0.92
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:7611837 original size:2 final size:2
Alignment explanation
Indices: 7611825--7611855 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7611815 AATCATAGAG
*
7611825 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7611856 TATGCCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7616559 original size:46 final size:46
Alignment explanation
Indices: 7616501--7616593 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
7616491 TTTCAAAACT
*
7616501 AAAATTCTAGAAACTTCTGCTACTATACTAAGTAAGTGATTAAGTG
1 AAAACTCTAGAAACTTCTGCTACTATACTAAGTAAGTGATTAAGTG
7616547 AAAACTCTAGAAACTTCTGCTACTATACTAAGTAAGTGATTAAGTG
1 AAAACTCTAGAAACTTCTGCTACTATACTAAGTAAGTGATTAAGTG
7616593 A
1 A
7616594 TTTTACTGTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (46 bp):
AAAACTCTAGAAACTTCTGCTACTATACTAAGTAAGTGATTAAGTG
Found at i:7618630 original size:59 final size:59
Alignment explanation
Indices: 7618534--7618656 Score: 230
Period size: 59 Copynumber: 2.1 Consensus size: 59
7618524 TTCACGACTG
*
7618534 TATT-GCTGTTTTGCAAGTGGATGTATGGACCATTCTACCAATCAAACATCACAAGAAT
1 TATTAGCTGTTTTGCAAGTGGATGTATAGACCATTCTACCAATCAAACATCACAAGAAT
7618592 TATTAGCTGTTTTGCAAGTGGATGTATAGACCATTCTACCAATCAAACATCACAAGAAT
1 TATTAGCTGTTTTGCAAGTGGATGTATAGACCATTCTACCAATCAAACATCACAAGAAT
7618651 TATTAG
1 TATTAG
7618657 TAGAGGCCTG
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
58 4 0.06
59 59 0.94
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (59 bp):
TATTAGCTGTTTTGCAAGTGGATGTATAGACCATTCTACCAATCAAACATCACAAGAAT
Found at i:7634146 original size:23 final size:22
Alignment explanation
Indices: 7634109--7634151 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7634099 GCTCCCTAAA
* *
7634109 ATCGACGGTCTAGATCAAGCTGC
1 ATCGACGGACGAGAT-AAGCTGC
7634132 ATCGACGGACGAGATAAGCT
1 ATCGACGGACGAGATAAGCT
7634152 TGTCCTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (22 bp):
ATCGACGGACGAGATAAGCTGC
Found at i:7641507 original size:3 final size:3
Alignment explanation
Indices: 7641493--7641630 Score: 80
Period size: 3 Copynumber: 47.3 Consensus size: 3
7641483 AATAGGACGG
* * * *
7641493 ATA ATA AAA ATA ATA GTA ATA ATA ATA A-A A-A AT- ATA ATG GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
7641538 ATA ATA TATA A-A AAA ATA A-A A-A ATA ATG ATA TTA ATA CATA A-A
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
*
7641581 TATA A-A TATA A-A TATA A-A TATA ATA ATA GTA ATA ATA ATA ATA ATA
1 -ATA ATA -ATA ATA -ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
7641627 ATA A
1 ATA A
7641631 AAGTTTTAAA
Statistics
Matches: 106, Mismatches: 15, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
2 16 0.15
3 80 0.75
4 10 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7641787 original size:15 final size:15
Alignment explanation
Indices: 7641767--7641812 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
7641757 ATATAAATAG
7641767 AAATAGAAATATAAT
1 AAATAGAAATATAAT
7641782 AAATAGAAATATAAT
1 AAATAGAAATATAAT
7641797 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
7641813 ATAGATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:7641800 original size:29 final size:29
Alignment explanation
Indices: 7641768--7641896 Score: 72
Period size: 29 Copynumber: 4.3 Consensus size: 29
7641758 TATAAATAGA
7641768 AATAGAAATATAATAAATAGAAATATAAT
1 AATAGAAATATAATAAATAGAAATATAAT
*
7641797 AATAGTAGAA-AT-ATAAATAGATAA-ATAAA
1 AATAG-A-AATATAATAAATAGA-AATATAAT
* * *
7641826 AATTAGATAA-ATAAT-AATAGTATTAGAAT
1 AA-TAGA-AATATAATAAATAGAAATATAAT
* *
7641855 AACA-AAATAAATATAAATAGAAACATACTAAT
1 AATAGAAATATA-ATAAATAG-AA-ATA-TAAT
*
7641887 AATAGCAATA
1 AATAGAAATA
7641897 ATATATTAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
26 2 0.03
27 3 0.04
28 4 0.05
29 40 0.54
30 11 0.15
31 4 0.05
32 6 0.08
33 4 0.05
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.26
Consensus pattern (29 bp):
AATAGAAATATAATAAATAGAAATATAAT
Found at i:7641815 original size:44 final size:44
Alignment explanation
Indices: 7641761--7641847 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
7641751 ATTAGTATAT
7641761 AAATAGAAATAGA-AATATAATAAA-TAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAA-ATAA-AAATTAGATAA-ATAATAATAGTAG
*
7641805 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
7641848 TTAGAATAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
43 3 0.08
44 32 0.82
45 4 0.10
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAATTAGATAAATAATAATAGTAG
Found at i:7641832 original size:15 final size:14
Alignment explanation
Indices: 7641759--7641875 Score: 71
Period size: 15 Copynumber: 8.1 Consensus size: 14
7641749 ATATTAGTAT
*
7641759 ATAAATAGAAATAG
1 ATAAATAAAAATAG
7641773 A-AATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
7641788 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
7641802 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
7641817 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
7641832 ATAAATAATAATAG
1 ATAAATAAAAATAG
*
7641846 TATTAGAATAACAA-A-
1 -A-TA-AATAAAAATAG
*
7641861 ATAAATATAAATAG
1 ATAAATAAAAATAG
7641875 A
1 A
7641876 AACATACTAA
Statistics
Matches: 83, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
12 6 0.07
13 5 0.06
14 23 0.28
15 37 0.45
16 5 0.06
17 7 0.08
ACGTcount: A:0.64, C:0.01, G:0.09, T:0.26
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:7643048 original size:44 final size:44
Alignment explanation
Indices: 7642975--7644182 Score: 401
Period size: 44 Copynumber: 27.7 Consensus size: 44
7642965 TAGTGGCTTA
* * *
7642975 AATCTGCTTCCA-TACTACTTCGGGAAGATAAGATTCACCATCTTC
1 AATCTGC-TCCACTACTGCTTAGGG-AGATAAGATTCACTATCTTC
*
7643020 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCA--ATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACTATCTTC
** * * * * ** *
7643064 AGCCTGCTCCACTGCTGCTCAGGGAGATAACG-CT-AATGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAA-GATTCACTATCTTC
* * * * **
7643107 AATCTGCTTCC-CTACTACCTCGGGAAGATAAGATTCGCCGTCTTC
1 AATCTGC-TCCACTACTGCTTAGGG-AGATAAGATTCACTATCTTC
* *
7643152 GATCTGCTCCACTACTGCTTAGGGAGATATGATCTGCA--ATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACTATCTTC
* * * * ** * ** *
7643196 -AGCTTGCACCACTGCTGC-TCGAGGAGATAAGGCT-AGTGGCTTA
1 AATC-TGCTCCACTACTGCTTAG-GGAGATAAGATTCACTATCTTC
* * * * *
7643239 AATCTGCTTCCCCACTAC--CTCAGGAAAATAAGATTCACCATCTTT
1 AATCTGC-T--CCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* *
7643284 GATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCA--ATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACTATCTTC
** * * * * ** * ** *
7643328 AGCCTACTCCACTGCTACTCAGGGAGATAAGGCT-AGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * * * * **
7643371 AATCTTCTTCC-CTACTACCTCGGGAAGACAAGATTCACCGTCTTC
1 AATCTGC-TCCACTACTGCTTAGGG-AGATAAGATTCACTATCTTC
* * ** *
7643416 GATCTGCTCCACTACTGCTTAGGGATATAAGA-TCTGTAATCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACT-ATCTTC
** * * * *
7643460 AGCCTGCTCCACTGCTGCTCAGGGAGATAAGA-TCTACAATCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-ACTATCTTC
* ** * * * ** *
7643504 AGTCTATTCCACTACTACTTAGGGAGAT-AGAAT-AGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * ** *
7643546 AATCTACTCCACTACTGCTTAGGGAGACAAGATT-TGTCATCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACT-ATCTTC
* * *
7643590 GATCTGTTCCACTACTGCTTAGGGAGACAAGATCTGCA--ATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACTATCTTC
** * * * ** ** *
7643634 AGCCTACTCCACTACTGCTTAGGAAGATAGGA-T-GGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * ** *
7643676 AATCTGCTCCACTACTGCTTAAGGAGACAAGATTTTCCATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * * *
7643720 GATCTACTCTACTACTGCTTAGGGAGACAAGATCTGCA--ATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACTATCTTC
** * * * ** ** *
7643764 AGCCTACTCCACTACTACTTAGGGAGATAGGA-T-GGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * * **
7643806 AATCAGCTCCACTACTGCTTAGGGAGACAGGATTTGCTATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * *
7643850 GATCTGCTCCACTACTACTTAGGGAGACAAGATCTGCA--ATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACTATCTTC
** * * * ** ** *
7643894 AGCCTACTCCACTACTACTTAGGGAGATAGGA-T-GGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * ** *
7643936 AATCTGCTCCACTATTGCTTAGGGAG-TCAGGATTTGCTATCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGAT-AAGATTCACTATCTTC
* * *
7643980 GATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCA-T-TCTTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGAT-T-CACTATCTTC
** * * * ** ** *
7644024 AGCCTACTCCACAACTGCTTAGGGAGATAGGA-T-GGTGGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* * ** *
7644066 AATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
* *
7644110 AATCTACTCCACTACTGCTTAGGGAGACAAGA-TCTA-TAATCTTC
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATTC-ACT-ATCTTC
** *
7644154 AGCCTACTCCACTACTGCTTAGGGAGATA
1 AATCTGCTCCACTACTGCTTAGGGAGATA
7644183 GGATCTGTGA
Statistics
Matches: 854, Mismatches: 242, Indels: 135
0.69 0.20 0.11
Matches are distributed among these distances:
41 5 0.01
42 154 0.18
43 62 0.07
44 547 0.64
45 75 0.09
46 11 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTGCTCCACTACTGCTTAGGGAGATAAGATTCACTATCTTC
Found at i:7643187 original size:132 final size:132
Alignment explanation
Indices: 7642950--7643490 Score: 868
Period size: 132 Copynumber: 4.1 Consensus size: 132
7642940 CACTGCAACT
* *
7642950 TCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCATACTACTTCGGGAAGATAAGATTCACCA
1 TCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCA
7643015 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGCT
7643080 GC
131 GC
* * * *
7643082 TCAGGGAGATAACGCTAATGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCG
1 TCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCA
* * *
7643147 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATATGATCTGCAATCTTCAGCTTGCACCACTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGCT
7643212 GC
131 GC
* * *
7643214 TC-GAGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCCACTACCTCAGGAAAATAAGATTCACC
1 TCAG-GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACC
* * *
7643278 ATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTACTCCACTGC
65 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGC
*
7643343 TAC
130 TGC
* * *
7643346 TCAGGGAGATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTCGGGAAGACAAGATTCACCG
1 TCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCA
* * *
7643411 TCTTCGATCTGCTCCACTACTGCTTAGGGATATAAGATCTGTAATCTTTAGCCTGCTCCACTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGCT
7643476 GC
131 GC
7643478 TCAGGGAGATAAG
1 TCAGGGAGATAAG
7643491 ATCTACAATC
Statistics
Matches: 371, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 369 0.99
133 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (132 bp):
TCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCA
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTGCT
GC
Found at i:7644188 original size:44 final size:44
Alignment explanation
Indices: 7643286--7644190 Score: 519
Period size: 44 Copynumber: 20.8 Consensus size: 44
7643276 CCATCTTTGA
* *
7643286 TCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAG
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * * * ** * *
7643330 CCTACTCCACTGCTACTCAGGGAGATAAG-GCTAGT-GGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCT-GTAATCTTCAG
* * * * * *
7643373 TCTTCTTCC-CTACTACCTCGGGAAGACAAGAT-T-CACCGTCTTC-G
1 TCTAC-TCCACTACTGCTTAGGG-AGACAAGATCTGTA--ATCTTCAG
* * * *
7643417 ATCTGCTCCACTACTGCTTAGGGATATAAGATCTGTAATCTTTAG
1 -TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * * ** *
7643462 CCTGCTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTTAG
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * ** * *
7643506 TCTATTCCACTACTACTTAGGGAGA-TAGAAT-AGT-GGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGACAAG-ATCTGTAATCTTCAG
* * *
7643548 TCTACTCCACTACTGCTTAGGGAGACAAGATTTGTCATCTT-TG
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
** *
7643591 ATCTGTTCCACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAG
1 -TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * * ** * *
7643636 CCTACTCCACTACTGCTTAGGAAGATAGGAT-GGT-GGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * *
7643678 TCTGCTCCACTACTGCTTAAGGAGACAAGAT-TTTCCATCTTC-G
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGT-AATCTTCAG
* *
7643721 ATCTACTCTACTACTGCTTAGGGAGACAAGATCTGCAATCTTCAG
1 -TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * * ** * *
7643766 CCTACTCCACTACTACTTAGGGAGATAGGAT-GGT-GGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* *
7643808 TC-AGCTCCACTACTGCTTAGGGAGACAGGATTTGCT-ATCTTC-G
1 TCTA-CTCCACTACTGCTTAGGGAGACAAGATCTG-TAATCTTCAG
* * *
7643851 ATCTGCTCCACTACTACTTAGGGAGACAAGATCTGCAATCTTCAG
1 -TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * * ** * *
7643896 CCTACTCCACTACTACTTAGGGAGATAGGAT-GGT-GGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * * *
7643938 TCTGCTCCACTATTGCTTAGGGAGTCAGGATTTGCT-ATCTT-TG
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTG-TAATCTTCAG
* * * *
7643981 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCATTCTTTAG
1 -TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * * * * ** * *
7644026 CCTACTCCACAACTGCTTAGGGAGATAGGAT-GGT-GGCTTAAA
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* ** *
7644068 TCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCAA
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
*
7644112 TCTACTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAG
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
* * *
7644156 CCTACTCCACTACTGCTTAGGGAGATAGGATCTGT
1 TCTACTCCACTACTGCTTAGGGAGACAAGATCTGT
7644191 GAATTTATCA
Statistics
Matches: 648, Mismatches: 176, Indels: 74
0.72 0.20 0.08
Matches are distributed among these distances:
41 1 0.00
42 149 0.23
43 31 0.05
44 441 0.68
45 25 0.04
46 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
TCTACTCCACTACTGCTTAGGGAGACAAGATCTGTAATCTTCAG
Found at i:7644210 original size:130 final size:130
Alignment explanation
Indices: 7643417--7644186 Score: 1103
Period size: 130 Copynumber: 5.9 Consensus size: 130
7643407 ACCGTCTTCG
* * * * ** * * * *
7643417 ATCTGCTCCACTACTGCTTAGGGATATAAGATCTGTAATCTT-TAGCCTGCTCCACTGCTGCTCA
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGA-TCTGCTCCACTACTGCTTA
* * * * * * *
7643481 GGGAGATAAGATCTACAATCTTTAGTCTATTCCACTACTACTTAGGGAGATAGAATAGTGGCTTA
65 GGGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTA
7643546 A
130 A
* * *
7643547 ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGTCATCTTTGATCTGTTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
* *
7643612 GGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTGCTTAGGAAGATAGGATGGTGGCTTAA
66 GGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAA
* * * * *
7643677 ATCTGCTCCACTACTGCTTAAGGAGACAAGATTTTCCATCTTCGATCTACTCTACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
7643742 GGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAA
66 GGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAA
* * *
7643807 ATC-AGCTCCACTACTGCTTAGGGAGACAGGATTTGCTATCTTCGATCTGCTCCACTACTACTTA
1 ATCTA-CTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
7643871 GGGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTA
65 GGGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTA
7643936 A
130 A
* * * * * *
7643937 ATCTGCTCCACTATTGCTTAGGGAGTCAGGATTTGCTATCTTTGATCTGCTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
* * * *
7644002 GGAGACAAGATCTGCATTCTTTAGCCTACTCCACAACTGCTTAGGGAGATAGGATGGTGGCTTAA
66 GGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAA
* *
7644067 ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCAATCTACTCCACTACTGCTTAG
1 ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
** *
7644132 GGAGACAAGATCTATAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGAT
66 GGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGAT
7644187 CTGTGAATTT
Statistics
Matches: 578, Mismatches: 59, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
130 577 1.00
131 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (130 bp):
ATCTACTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
GGAGACAAGATCTGCAATCTTCAGCCTACTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAA
Found at i:7650029 original size:3 final size:3
Alignment explanation
Indices: 7650015--7650154 Score: 70
Period size: 3 Copynumber: 48.3 Consensus size: 3
7650005 AATAGGATGG
* * * *
7650015 ATA ATA AAA ATA ATA GTA ATA ATA ATA A-A A-A AT- ATA ATG GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
7650060 ATA ATA TATA A-A A-A ATA A-A A-A ATA ATG ATA TTA ATA CATA A-A
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
*
7650102 TATAA ATA GA-A AT- ATA ATA CATA GA-A AT- ATA ATA ATA GTA ATA
1 -AT-A ATA -ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA ATA ATA
7650145 ATA ATA ATA A
1 ATA ATA ATA A
7650155 AAGTTTTAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 30
0.70 0.10 0.20
Matches are distributed among these distances:
2 21 0.20
3 72 0.67
4 13 0.12
5 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:7650051 original size:24 final size:24
Alignment explanation
Indices: 7650015--7650156 Score: 90
Period size: 29 Copynumber: 5.4 Consensus size: 24
7650005 AATAGGATGG
7650015 ATAATAAAAATAATAGTAATAATA
1 ATAATAAAAATAATAGTAATAATA
*
7650039 ATAA-AAAATATAATGGTAATAATA
1 ATAATAAAA-ATAATAGTAATAATA
* *
7650063 ATATATAAAAAATAAAAAATAATGATATTA
1 ATA-AT-AAAAAT-AATAGTAAT-A-A-TA
* *
7650093 ATACATAAATATAAATAGAAAT-ATA
1 ATA-ATAAAAAT-AATAGTAATAATA
7650118 ATACATAGAAATATAATAATAGTAATAATA
1 ATA-AT---AA-A-AATAATAGTAATAATA
7650148 ATAATAAAA
1 ATAATAAAA
7650157 GTTTTAAAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 28
0.70 0.08 0.21
Matches are distributed among these distances:
23 4 0.04
24 22 0.24
25 10 0.11
26 5 0.05
27 10 0.11
28 3 0.03
29 24 0.26
30 15 0.16
ACGTcount: A:0.65, C:0.01, G:0.05, T:0.29
Consensus pattern (24 bp):
ATAATAAAAATAATAGTAATAATA
Found at i:7650061 original size:27 final size:27
Alignment explanation
Indices: 7650031--7650156 Score: 112
Period size: 27 Copynumber: 4.5 Consensus size: 27
7650021 AAAATAATAG
*
7650031 TAATAATAATAAAAAATATAATGGTAA
1 TAATAATAATAAAAAATATAATAGTAA
* *
7650058 TAATAATATATAAAAAATA-AAAAATAA
1 TAATAATA-ATAAAAAATATAATAGTAA
* * * *
7650085 TGATATTAATACATAAATATAAATAGAAA
1 TAATAATAATA-AAAAATAT-AATAGTAA
*
7650114 T-ATAATACATAGAAATATAATAATAGTAA
1 TAATAATA-ATA-AAAAAT-ATAATAGTAA
7650143 TAATAATAATAAAA
1 TAATAATAATAAAA
7650157 GTTTTAAAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
26 3 0.04
27 25 0.32
28 18 0.23
29 24 0.31
30 8 0.10
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (27 bp):
TAATAATAATAAAAAATATAATAGTAA
Found at i:7650341 original size:43 final size:43
Alignment explanation
Indices: 7650285--7650383 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 43
7650275 ATATTAGTAT
* * **
7650285 ATAAAT-ATAAATAGAAATATAATAATAGTAGAAATATAAATAG
1 ATAAATAAT-AATAGAAATAGAATAACAAAAGAAATATAAATAG
* * *
7650328 ATAAATAATAATAGTATTAGAATAACAAAATAAATATAAATAG
1 ATAAATAATAATAGAAATAGAATAACAAAAGAAATATAAATAG
7650371 A-AACATAATAATA
1 ATAA-ATAATAATA
7650384 ATAGCAATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.04
43 43 0.91
44 2 0.04
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (43 bp):
ATAAATAATAATAGAAATAGAATAACAAAAGAAATATAAATAG
Found at i:7650352 original size:29 final size:29
Alignment explanation
Indices: 7650268--7650351 Score: 107
Period size: 29 Copynumber: 2.8 Consensus size: 29
7650258 AAAAAATAAT
*
7650268 GAAAATAATATTAGTATATAAATATAAATA
1 GAAAATAATAATAGTAT-TAAATATAAATA
*
7650298 GAAATATAATAATAGTA-GAAATATAAATA
1 GAAA-ATAATAATAGTATTAAATATAAATA
7650327 GATAAATAATAATAGTATTAGAATA
1 GA-AAATAATAATAGTATTA-AATA
7650352 ACAAAATAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
29 25 0.53
30 7 0.15
31 15 0.32
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (29 bp):
GAAAATAATAATAGTATTAAATATAAATA
Found at i:7656675 original size:21 final size:21
Alignment explanation
Indices: 7656649--7656689 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7656639 ACCTACTCGA
* *
7656649 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTATTGTGGAGTAC
7656670 ACTCCACCTATTGTGGAGTA
1 ACTCCACCTATTGTGGAGTA
7656690 TTTCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
ACTCCACCTATTGTGGAGTAC
Found at i:7662324 original size:21 final size:21
Alignment explanation
Indices: 7662298--7662338 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7662288 ATCTGCTCAA
* *
7662298 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7662319 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7662339 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7672383 original size:50 final size:49
Alignment explanation
Indices: 7672265--7672440 Score: 228
Period size: 50 Copynumber: 3.5 Consensus size: 49
7672255 CTGGTACGCA
* * *
7672265 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGAGTACACG
**
7672314 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATC-GAGTACACG
* * *
7672364 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGAGTACACG
*
7672415 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
7672441 TGCGACCTCA
Statistics
Matches: 111, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
49 31 0.28
50 46 0.41
51 34 0.31
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGAGTACACG
Found at i:7672448 original size:101 final size:99
Alignment explanation
Indices: 7672265--7672448 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
7672255 CTGGTACGCA
* * *
7672265 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTACACTTA
*
7672330 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * *
7672364 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGAGTACGCATAGTAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACACATAGTAGCCTACACT
*
7672429 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
7672449 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:7678536 original size:27 final size:27
Alignment explanation
Indices: 7678505--7678771 Score: 250
Period size: 27 Copynumber: 9.7 Consensus size: 27
7678495 ATCTTACAGG
*
7678505 ATGGGGGTATAAT-AGTCATTTTACCCT
1 ATGGGGGTAT-TTCAGTCATTTTACCCT
* *
7678532 ATGGGGGTATTTCGGTCATTTTACCTT
1 ATGGGGGTATTTCAGTCATTTTACCCT
* *
7678559 ATGGGGGTATTTCGGTTATTTTACCCT
1 ATGGGGGTATTTCAGTCATTTTACCCT
**
7678586 ATGGGGGTATTTCAAACATTTTACCCT
1 ATGGGGGTATTTCAGTCATTTTACCCT
*
7678613 ACGGGGGTATTTCAGGTAAAATCATTTTACCCT
1 ATGGGGGTATTTCA-G-----TCATTTTACCCT
* * *
7678646 ACGAGGGTATTTCGGTCATTTTACCCT
1 ATGGGGGTATTTCAGTCATTTTACCCT
* ** * *
7678673 ACGAAGGTATTTC-GTTTATTTTACCTT
1 ATGGGGGTATTTCAG-TCATTTTACCCT
* *
7678700 ATGAGGGTATTTCGGTCATTTTACCCT
1 ATGGGGGTATTTCAGTCATTTTACCCT
**
7678727 ATGGGGGTATTAAAGTCATTTTACCCT
1 ATGGGGGTATTTCAGTCATTTTACCCT
* *
7678754 ATGGGGATATTTCGGTCA
1 ATGGGGGTATTTCAGTCA
7678772 CTATTTCAGC
Statistics
Matches: 202, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.01
27 175 0.87
28 1 0.00
32 1 0.00
33 23 0.11
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.39
Consensus pattern (27 bp):
ATGGGGGTATTTCAGTCATTTTACCCT
Found at i:7678720 original size:114 final size:114
Alignment explanation
Indices: 7678520--7678737 Score: 319
Period size: 114 Copynumber: 1.9 Consensus size: 114
7678510 GGTATAATAG
* * * * **
7678520 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCTTATGGGGGTATTTCGGTTATTTTACCC
1 TCATTTTACCCTACGAGGGTATTTCGGTCATTTTACCCTACGAAGGTATTTCGGTTATTTTACCC
*
7678585 TATGGGGGTATTTCAAACATTTTACCCTACGGGGGTATTTCAGGTAAAA
66 TATGAGGGTATTTCAAACATTTTACCCTACGGGGGTATTTCAGGTAAAA
* *
7678634 TCATTTTACCCTACGAGGGTATTTCGGTCATTTTACCCTACGAAGGTATTTCGTTTATTTTACCT
1 TCATTTTACCCTACGAGGGTATTTCGGTCATTTTACCCTACGAAGGTATTTCGGTTATTTTACCC
*** *
7678699 TATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATT
66 TATGAGGGTATTTCAAACATTTTACCCTACGGGGGTATT
7678738 AAAGTCATTT
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
114 91 1.00
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (114 bp):
TCATTTTACCCTACGAGGGTATTTCGGTCATTTTACCCTACGAAGGTATTTCGGTTATTTTACCC
TATGAGGGTATTTCAAACATTTTACCCTACGGGGGTATTTCAGGTAAAA
Found at i:7682237 original size:27 final size:27
Alignment explanation
Indices: 7682023--7682246 Score: 263
Period size: 27 Copynumber: 8.3 Consensus size: 27
7682013 TTATCTTACA
*
7682023 GGGGTATTACAGTCATTTTACCCTATG
1 GGGGTATTATAGTCATTTTACCCTATG
* *
7682050 GGGGTATTACAGTCATTTTACCCTATA
1 GGGGTATTATAGTCATTTTACCCTATG
* * * *
7682077 AGGGTATTTTGGTCATTTCACCCTATG
1 GGGGTATTATAGTCATTTTACCCTATG
* * * *
7682104 GGTGTATTTTGGTCATTTCACCCTATG
1 GGGGTATTATAGTCATTTTACCCTATG
*
7682131 AGGGTATT-TCAGTCATTTTACCCTATG
1 GGGGTATTAT-AGTCATTTTACCCTATG
* *
7682158 GGTGTATT-TCGGTCATTTTACCCTATG
1 GGGGTATTAT-AGTCATTTTACCCTATG
* *
7682185 GGGGTATTTTGGTCATTTTACCCTATG
1 GGGGTATTATAGTCATTTTACCCTATG
7682212 GGGGTATTATAGTCATTTTACCCTATG
1 GGGGTATTATAGTCATTTTACCCTATG
*
7682239 GGGATATT
1 GGGGTATT
7682247 TCGATCACTA
Statistics
Matches: 175, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 173 0.99
28 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGGTATTATAGTCATTTTACCCTATG
Found at i:7682238 original size:81 final size:80
Alignment explanation
Indices: 7682034--7682249 Score: 326
Period size: 81 Copynumber: 2.7 Consensus size: 80
7682024 GGGTATTACA
* * *
7682034 GTCATTTTACCCTATGGGGGTATTACAGTCATTTTACCCTATAAGGGTATTTTGGTCATTTCACC
1 GTCATTTTACCCTATGGGGGTATTATAGTCATTTTACCCTAT-GGGGTATTTCGGTCATTTCACC
*
7682099 CTATGGGTGTATTTTG
65 CTATGGGGGTATTTTG
* * *
7682115 GTCATTTCACCCTATGAGGGTATT-TCAGTCATTTTACCCTATGGGTGTATTTCGGTCATTTTAC
1 GTCATTTTACCCTATGGGGGTATTAT-AGTCATTTTACCCTATGGG-GTATTTCGGTCATTTCAC
7682179 CCTATGGGGGTATTTTG
64 CCTATGGGGGTATTTTG
7682196 GTCATTTTACCCTATGGGGGTATTATAGTCATTTTACCCTATGGGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTATAGTCATTTTACCCTATGGGG-TATTTCG
7682250 ATCACTATTT
Statistics
Matches: 122, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
80 3 0.02
81 118 0.97
82 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.42
Consensus pattern (80 bp):
GTCATTTTACCCTATGGGGGTATTATAGTCATTTTACCCTATGGGGTATTTCGGTCATTTCACCC
TATGGGGGTATTTTG
Found at i:7685605 original size:27 final size:27
Alignment explanation
Indices: 7685569--7685925 Score: 425
Period size: 27 Copynumber: 13.3 Consensus size: 27
7685559 TTATCTTACA
* * *
7685569 GGGTATTACAGTTATTTTACGCTATGG
1 GGGTATTTCAGTCATTTTACCCTATGG
* **
7685596 GGGTATTACAGTCATTTTACCCTATAA
1 GGGTATTTCAGTCATTTTACCCTATGG
* *
7685623 GGGTATTTCGGTCATTTCACCCTATGG
1 GGGTATTTCAGTCATTTTACCCTATGG
* ** * **
7685650 GTGTATTTTGGTCATTTTACCCTGTAA
1 GGGTATTTCAGTCATTTTACCCTATGG
*
7685677 GGGTATTTCAGTCATTTTACCCTATGA
1 GGGTATTTCAGTCATTTTACCCTATGG
* *
7685704 AGGTAGTTT-GGTCATTTTACCCTAT-G
1 GGGTA-TTTCAGTCATTTTACCCTATGG
* *
7685730 GGGTATTTCGGTCATTTTACCCTATAG
1 GGGTATTTCAGTCATTTTACCCTATGG
*
7685757 GGGTATTACAGTCATTTTACCCTATGG
1 GGGTATTTCAGTCATTTTACCCTATGG
7685784 GGGTATTTC-GATCATTTTACCCTAT-G
1 GGGTATTTCAG-TCATTTTACCCTATGG
* ** *
7685810 GGGTATTACAGTCATTTTACTGTATAG
1 GGGTATTTCAGTCATTTTACCCTATGG
7685837 GGGTATTTCAGTCATTTTACCCTATGG
1 GGGTATTTCAGTCATTTTACCCTATGG
**
7685864 GGGTATTTTGGTCATTTTACCCTATGG
1 GGGTATTTCAGTCATTTTACCCTATGG
*
7685891 GGGTATTACAGTCATTTTACCCTATGG
1 GGGTATTTCAGTCATTTTACCCTATGG
7685918 GGGTATTT
1 GGGTATTT
7685926 TGATCACTAT
Statistics
Matches: 283, Mismatches: 41, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
25 3 0.01
26 42 0.15
27 235 0.83
28 3 0.01
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTATGG
Found at i:7685772 original size:80 final size:80
Alignment explanation
Indices: 7685569--7685924 Score: 464
Period size: 80 Copynumber: 4.4 Consensus size: 80
7685559 TTATCTTACA
* * *
7685569 GGGTATTACAGTTATTTTACGCTATGGGGGTATTACAGTCATTTTACCCTAT-AAGGGTATTTCG
1 GGGTATTACAGTCATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATGAA-GGTATTTCG
*
7685633 GTCATTTCACCCTATG
65 GTCATTTTACCCTATG
*** * * *
7685649 GGTGTATTTTGGTCATTTTACCCTGTAAGGGTATTTCAGTCATTTTACCCTATGAAGGTAGTTT-
1 GG-GTATTACAGTCATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATGAAGGTA-TTTC
7685713 GGTCATTTTACCCTATG
64 GGTCATTTTACCCTATG
* * ** *
7685730 GGGTATTTCGGTCATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATGGGGGTATTTCGA
1 GGGTATTACAGTCATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATGAAGGTATTTCGG
7685795 TCATTTTACCCTATG
66 TCATTTTACCCTATG
** * ** *
7685810 GGGTATTACAGTCATTTTACTGTATAGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTTGG
1 GGGTATTACAGTCATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATGAAGGTATTTCGG
7685875 TCATTTTACCCTATGG
66 TCATTTTACCCTAT-G
*
7685891 GGGTATTACAGTCATTTTACCCTATGGGGGTATT
1 GGGTATTACAGTCATTTTACCCTATAGGGGTATT
7685925 TTGATCACTA
Statistics
Matches: 244, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
79 3 0.01
80 141 0.58
81 95 0.39
82 5 0.02
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.41
Consensus pattern (80 bp):
GGGTATTACAGTCATTTTACCCTATAGGGGTATTACAGTCATTTTACCCTATGAAGGTATTTCGG
TCATTTTACCCTATG
Found at i:7701481 original size:71 final size:70
Alignment explanation
Indices: 7701344--7701485 Score: 203
Period size: 71 Copynumber: 2.0 Consensus size: 70
7701334 AGCGTATATG
* * *
7701344 CTGTATTGTGTAATACGATAGTCTGCCGTATAGACAGGTTACAGTTAAACTGGCAGACCAGATAA
1 CTGTATTGTGTAATACGATAGTCCGCCATATAGACAGGTTACAGTTAAACTGCCAGACCAGATAA
7701409 TAGTA
66 TAGTA
* * ** *
7701414 CTGTATTGTGTAATGCGGTAGTCCGCCATATAGATGGGGTTGCAGTTAAACTGCCAGACCAGATA
1 CTGTATTGTGTAATACGATAGTCCGCCATATAGA-CAGGTTACAGTTAAACTGCCAGACCAGATA
7701479 ATAGTA
65 ATAGTA
7701485 C
1 C
7701486 GCAACAAAGC
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
70 30 0.48
71 33 0.52
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (70 bp):
CTGTATTGTGTAATACGATAGTCCGCCATATAGACAGGTTACAGTTAAACTGCCAGACCAGATAA
TAGTA
Found at i:7702700 original size:15 final size:15
Alignment explanation
Indices: 7702682--7702713 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7702672 CGAAAACGAT
7702682 AATAATAATAATATA
1 AATAATAATAATATA
*
7702697 AATAATAATAGTATA
1 AATAATAATAATATA
7702712 AA
1 AA
7702714 ACGATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAATAATATA
Found at i:7703005 original size:29 final size:28
Alignment explanation
Indices: 7702964--7703019 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
7702954 TATAGCGTTT
* *
7702964 AAAAATACATACATAATGTAGTTATTAAA
1 AAAAATACATACACAATATAG-TATTAAA
*
7702993 AAAAATATATACACAATATAGTATTAA
1 AAAAATACATACACAATATAGTATTAA
7703020 GAATATACAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAAATACATACACAATATAGTATTAAA
Found at i:7703026 original size:25 final size:27
Alignment explanation
Indices: 7702993--7703053 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
7702983 AGTTATTAAA
*
7702993 AAAAATATATAC-ACA-ATATAGTATT
1 AAAAATATACACAACATATATAGTATT
* * *
7703018 AAGAATATACACAACATGTATGGTATT
1 AAAAATATACACAACATATATAGTATT
7703045 AAAAATATA
1 AAAAATATA
7703054 GTATTAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
25 10 0.34
26 3 0.10
27 16 0.55
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAAATATACACAACATATATAGTATT
Found at i:7703138 original size:27 final size:26
Alignment explanation
Indices: 7703095--7703153 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
7703085 TATTGATTAA
* *
7703095 AAAATGCTAATACTAATA-ATAGTAGT
1 AAAATACTAATAATAATAGATA-TAGT
7703121 AAAATACTAATAAATAATAGATATAGT
1 AAAATACTAAT-AATAATAGATATAGT
*
7703148 ATAATA
1 AAAATA
7703154 ATGAAAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.36
27 15 0.54
28 3 0.11
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (26 bp):
AAAATACTAATAATAATAGATATAGT
Found at i:7703375 original size:3 final size:3
Alignment explanation
Indices: 7703369--7703554 Score: 119
Period size: 3 Copynumber: 63.0 Consensus size: 3
7703359 TATTATTATT
7703369 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA GA-A ATA CA-A A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA -ATA ATA
* * * * * * *
7703412 AGA A-A AT- ATA ATA AAA ATA TTA A-A TTA A-A GTA ATA A-A AAA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
7703455 ATA CT- ATA TATAA ATA TATA TATA CATA A-A A-A AT- ATA CACTA ATA
1 ATA ATA ATA -AT-A ATA -ATA -ATA -ATA ATA ATA ATA ATA -A-TA ATA
7703500 TATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7703546 ATA ATA ATA
1 ATA ATA ATA
7703555 TTGAAATACA
Statistics
Matches: 151, Mismatches: 13, Indels: 38
0.75 0.06 0.19
Matches are distributed among these distances:
2 21 0.14
3 106 0.70
4 21 0.14
5 3 0.02
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7704220 original size:28 final size:27
Alignment explanation
Indices: 7704160--7704218 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
7704150 AAGGCCAAAA
*
7704160 TTTTTTAAAAATAATCACTTTCTCATC
1 TTTTTTAAAAAAAATCACTTTCTCATC
*
7704187 TGTTTTAAAAAAAATCACCTTTCT--TC
1 TTTTTTAAAAAAAATCA-CTTTCTCATC
7704213 TTTTTT
1 TTTTTT
7704219 TTTCTCTGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.25
27 15 0.54
28 6 0.21
ACGTcount: A:0.31, C:0.17, G:0.02, T:0.51
Consensus pattern (27 bp):
TTTTTTAAAAAAAATCACTTTCTCATC
Found at i:7704348 original size:10 final size:10
Alignment explanation
Indices: 7704335--7704359 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7704325 TTTTTTTATC
7704335 TATATCTATA
1 TATATCTATA
7704345 TATATCTATA
1 TATATCTATA
7704355 TATAT
1 TATAT
7704360 ATGCTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATCTATA
Found at i:7705178 original size:21 final size:21
Alignment explanation
Indices: 7705154--7705203 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
7705144 ATGTAAAAAA
* *
7705154 CGGCACATGACCGTGTGCCTG
1 CGGCACACGACCGTGTGACTG
*
7705175 CGGCACACGCCCGTGTGACTG
1 CGGCACACGACCGTGTGACTG
*
7705196 AGGCACAC
1 CGGCACAC
7705204 ACCTATGTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (21 bp):
CGGCACACGACCGTGTGACTG
Found at i:7709811 original size:27 final size:26
Alignment explanation
Indices: 7709772--7710010 Score: 122
Period size: 27 Copynumber: 8.8 Consensus size: 26
7709762 ATTACAATTT
* * **
7709772 TACCCTCGATTTATAAAGTTACTGAAA
1 TACCCTTGGTTTATAAA-TTACCAAAA
*
7709799 TACCCTTGGTTTACATAATTACCAAAA
1 TACCCTTGGTTTATA-AATTACCAAAA
* *
7709826 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTAT-AAATTACCAAAA
* *
7709853 TACCCTTAGTTTACAACATTACCAAAA
1 TACCCTTGGTTTATAA-ATTACCAAAA
* * *
7709880 TACCCCTAGTTTGCA-AAATTATCAAAA
1 TACCCTTGGTTT--ATAAATTACCAAAA
* * * *
7709907 TACCCCTAGTTTGTAAAATTGCCAAAA
1 TACCCTTGGTTTAT-AAATTACCAAAA
* * ** * **
7709934 TACTCGTAATTTTTGAAATTACTGAAA
1 TACCCTTGGTTTAT-AAATTACCAAAA
*
7709961 TACCCTTGACTTGTA-AAATTACCAAAA
1 TACCCTTG-GTT-TATAAATTACCAAAA
* * *
7709988 TACCCCTGATTTACAAAATTACC
1 TACCCTTGGTTTA-TAAATTACC
7710011 GTTTTACTCT
Statistics
Matches: 167, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
25 2 0.01
26 4 0.02
27 152 0.91
28 7 0.04
29 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (26 bp):
TACCCTTGGTTTATAAATTACCAAAA
Found at i:7709830 original size:54 final size:54
Alignment explanation
Indices: 7709774--7710010 Score: 194
Period size: 54 Copynumber: 4.4 Consensus size: 54
7709764 TACAATTTTA
* ** *
7709774 CCCTCGATTTATAAAGTTACTGAAATACCCTTGGTTTACATA-ATTACCAAAATAC
1 CCCT-GATTTATAAAATTACCAAAATACCCTTAGTTTACA-ACATTACCAAAATAC
* *
7709829 CCCTGGTTTGTAAAATTACCAAAATACCCTTAGTTTACAACATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATACCCTTAGTTTACAACATTACCAAAATAC
** * * ** * *
7709883 CCCT-AGTTTGCAAAATTATCAAAATACCCCTAGTTTGTAAAATTGCCAAAATAC
1 CCCTGA-TTTATAAAATTACCAAAATACCCTTAGTTTACAACATTACCAAAATAC
* * * * * ** *
7709937 TCGTAATTTTTGAAATTACTGAAATACCCTTGACTTGTA-AA-ATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATACCCTT-AGTT-TACAACATTACCAAAATAC
*
7709991 CCCTGATTTACAAAATTACC
1 CCCTGATTTATAAAATTACC
7710011 GTTTTACTCT
Statistics
Matches: 144, Mismatches: 33, Indels: 11
0.77 0.18 0.06
Matches are distributed among these distances:
53 1 0.01
54 132 0.92
55 10 0.07
56 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (54 bp):
CCCTGATTTATAAAATTACCAAAATACCCTTAGTTTACAACATTACCAAAATAC
Found at i:7709881 original size:81 final size:80
Alignment explanation
Indices: 7709796--7710010 Score: 218
Period size: 81 Copynumber: 2.6 Consensus size: 80
7709786 AAAGTTACTG
*
7709796 AAATACCCTTGGTTTACATAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATAC-CCTT
1 AAATACCCTTGGTTTACA-AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACTCCTA
7709860 AGTTTACAACATTACCA
65 AGTTTACAA-ATTACCA
* * * * * * *
7709877 AAATACCCCTAGTTTGCAAAATTATCAAAATACCCCTAGTTTGTAAAATTGCCAAAATACTCGTA
1 AAATACCCTTGGTTTAC-AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACTCCTA
* ** **
7709942 ATTTTTGAAATTACTG
65 AGTTTACAAATTACCA
* * **
7709958 AAATACCCTTGACTTGTA-AAATTACCAAAATACCCCTGATTTACAAAATTACC
1 AAATACCCTTG-GTT-TACAAATTACCAAAATACCCCTGGTTTGTAAAATTACC
7710011 GTTTTACTCT
Statistics
Matches: 107, Mismatches: 23, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
81 95 0.89
82 11 0.10
83 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATACCCTTGGTTTACAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACTCCTAA
GTTTACAAATTACCA
Found at i:7710024 original size:27 final size:27
Alignment explanation
Indices: 7709988--7710182 Score: 219
Period size: 27 Copynumber: 7.2 Consensus size: 27
7709978 ATTACCAAAA
* *
7709988 TACCCCTGATTTACAAAATTACCGTTT
1 TACCCTTGATTTACAGAATTACCGTTT
* ***
7710015 TACTCTTGATTTACAGAATTATTATTT
1 TACCCTTGATTTACAGAATTACCGTTT
* * * *
7710042 TACCCTCGATTTATAGATTTACTGTTT
1 TACCCTTGATTTACAGAATTACCGTTT
* *
7710069 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTTGATTTACAGAATTACCGTTT
* *
7710096 TACCCTTTATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACCGTTT
* *
7710123 TACCCTTGAGTTACAGAATTATCGTTT
1 TACCCTTGATTTACAGAATTACCGTTT
* * *
7710150 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTTGATTTACAGAATTACCGTTT
7710177 TACCCT
1 TACCCT
7710183 CTATTGTGAA
Statistics
Matches: 141, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 141 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.44
Consensus pattern (27 bp):
TACCCTTGATTTACAGAATTACCGTTT
Found at i:7710046 original size:81 final size:81
Alignment explanation
Indices: 7709961--7710182 Score: 203
Period size: 81 Copynumber: 2.7 Consensus size: 81
7709951 ATTACTGAAA
* *
7709961 TACCCTTGACTTGTAAAATTACCAAAATACCC-CTGATTTACAAAATTACCGTTTTACTCTTGAT
1 TACCCTTGACTTATAAAATTACCAAAATACCCTC-GATTTACAAAATTACCGTTTTACCCTTGAT
*
7710025 TTACAGAATTATTATTT
65 TTACAGAATTACTATTT
* * * * ***** * * *
7710042 TACCCTCGATTTATAGATTTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTTATT
1 TACCCTTGACTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTACCCTTGATT
*
7710107 TACAGAATTACTGTTT
66 TACAGAATTACTATTT
* * * * **** *
7710123 TACCCTTGAGTTACAGAATTATCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCT
1 TACCCTTGACTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTACCCT
7710183 CTATTGTGAA
Statistics
Matches: 117, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
81 116 0.99
82 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (81 bp):
TACCCTTGACTTATAAAATTACCAAAATACCCTCGATTTACAAAATTACCGTTTTACCCTTGATT
TACAGAATTACTATTT
Found at i:7710330 original size:27 final size:27
Alignment explanation
Indices: 7710192--7710308 Score: 153
Period size: 27 Copynumber: 4.3 Consensus size: 27
7710182 TCTATTGTGA
* * *
7710192 AATTACTGAAATACCCCTATAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
7710219 AATTATCGAAATACCCTTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
7710246 AATTACCGAAATACTCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
7710273 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
7710300 AATTACCGA
1 AATTACCGA
7710309 GATAGCCTTG
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:7710595 original size:27 final size:26
Alignment explanation
Indices: 7710557--7710639 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
7710547 TGGAGGAAGC
*
7710557 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
7710584 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
7710610 GTATATGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
7710637 GTT
1 GTT
7710640 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:7710779 original size:22 final size:22
Alignment explanation
Indices: 7710747--7710805 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
7710737 CCCGTTATTG
*
7710747 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
7710769 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
7710791 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
7710806 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:7711136 original size:6 final size:6
Alignment explanation
Indices: 7711127--7711219 Score: 64
Period size: 6 Copynumber: 15.3 Consensus size: 6
7711117 TTGCATTCAC
* *
7711127 ATTCTG ATTCTG ATTCTG -TTACTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * *
7711175 -TCACCTG ATTTTG ATTTTG ATTCTC ATTTTG GTTCTA ATTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT
7711220 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 16, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
5 3 0.05
6 58 0.88
7 4 0.06
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:7711161 original size:30 final size:31
Alignment explanation
Indices: 7711127--7711198 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 31
7711117 TTGCATTCAC
* *
7711127 ATTCTGATTCTGATTCTGTTA-CTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTGATACTG
**
7711157 ATTCTGATTCTAATTCTGTCACCTGATTTTG
1 ATTCTGATTCTAATTCTGTCACCTGATACTG
*
7711188 ATTTTGATTCT
1 ATTCTGATTCT
7711199 CATTTTGGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 19 0.53
31 17 0.47
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATACTG
Found at i:7711228 original size:18 final size:17
Alignment explanation
Indices: 7711207--7711240 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7711197 CTCATTTTGG
7711207 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
7711225 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
7711241 GGCTAAGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:7720888 original size:29 final size:31
Alignment explanation
Indices: 7720856--7720913 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
7720846 GTAAATACTC
* * *
7720856 AAAATTTGAGAGT-TAA-AGTGTAAATATGA
1 AAAAGTTGAAAGTCTAATAGTGCAAATATGA
7720885 AAAAGTTGAAAGTCTAATAGTGCAAATAT
1 AAAAGTTGAAAGTCTAATAGTGCAAATAT
7720914 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.46
30 3 0.12
31 10 0.42
ACGTcount: A:0.48, C:0.03, G:0.19, T:0.29
Consensus pattern (31 bp):
AAAAGTTGAAAGTCTAATAGTGCAAATATGA
Found at i:7726713 original size:2 final size:2
Alignment explanation
Indices: 7726702--7726740 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
7726692 AATCTACATT
*
7726702 TA TA TA -A TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7726741 ACAAACATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7728007 original size:90 final size:87
Alignment explanation
Indices: 7727871--7728035 Score: 233
Period size: 90 Copynumber: 1.9 Consensus size: 87
7727861 GACTCAAATT
*
7727871 TTTCAAAAAAAGCAATTTAGCCCCTGTTATTTTTTGCACTCAATTGGATACTTGAACT-TTCAAA
1 TTTCAAAAAAAGCAATTAAGCCCCTGTTATTTTTTGCACTCAATTGGATACTTGAACTATT--AA
*
7727935 ATGCATTAAAAAGGCCCTTAAACA
64 ATGCATCAAAAAGGCCCTTAAACA
* * * *
7727959 TTTCAAAAAAAGCAATTAAATCCCACTTTTTTTTTTTGCACTCAATTGGTTACTTGAACTATTAA
1 TTTCAAAAAAAGCAATT-AAGCCC-CTGTTATTTTTTGCACTCAATTGGATACTTGAACTATTAA
7728024 ATGCATCAAAAA
64 ATGCATCAAAAA
7728036 AAACCTTTGA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
88 17 0.25
89 17 0.25
90 32 0.47
91 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (87 bp):
TTTCAAAAAAAGCAATTAAGCCCCTGTTATTTTTTGCACTCAATTGGATACTTGAACTATTAAAT
GCATCAAAAAGGCCCTTAAACA
Found at i:7728269 original size:17 final size:18
Alignment explanation
Indices: 7728247--7728280 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7728237 GTAAAATTTT
7728247 ATAAAAT-CATAAAAAAC
1 ATAAAATGCATAAAAAAC
7728264 ATAAAATGCATAAAAAA
1 ATAAAATGCATAAAAAA
7728281 GGCCCTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.71, C:0.09, G:0.03, T:0.18
Consensus pattern (18 bp):
ATAAAATGCATAAAAAAC
Found at i:7728406 original size:19 final size:20
Alignment explanation
Indices: 7728382--7728434 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
7728372 GACATGTAGC
7728382 AAAAATTAAAAAAATATAT-
1 AAAAATTAAAAAAATATATG
* * *
7728401 AAAAATCAATAAAATTTATGG
1 AAAAATTAAAAAAATATAT-G
7728422 AAAAATTATAAAA
1 AAAAATTA-AAAA
7728435 TGCTTCTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 16 0.62
21 7 0.27
22 3 0.12
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAAATTAAAAAAATATATG
Found at i:7728546 original size:28 final size:28
Alignment explanation
Indices: 7728476--7728545 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
7728466 TTTTTACATT
7728476 TTTTATAATTTTTTACGACTTTATAAAA
1 TTTTATAATTTTTTACGACTTTATAAAA
* * *
7728504 TTTAATAATTTTTTACGATTTTCATGAAA
1 TTTTATAATTTTTTACGACTTT-ATAAAA
*
7728533 TTTTACAATTTTT
1 TTTTATAATTTTT
7728546 ATAAAATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 20 0.56
29 16 0.44
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (28 bp):
TTTTATAATTTTTTACGACTTTATAAAA
Found at i:7728565 original size:20 final size:20
Alignment explanation
Indices: 7728513--7728565 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
7728503 ATTTAATAAT
* *
7728513 TTTTTACGATTTTCATGAAA
1 TTTTTACGATTTTTATAAAA
*
7728533 -TTTTACAATTTTTATAAAA
1 TTTTTACGATTTTTATAAAA
*
7728552 TTTTTATGATTTTT
1 TTTTTACGATTTTT
7728566 GTATTTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (20 bp):
TTTTTACGATTTTTATAAAA
Found at i:7728602 original size:21 final size:20
Alignment explanation
Indices: 7728578--7728623 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
7728568 ATTTTTTTAA
7728578 TTTTAAATAAAATTTAGATAT
1 TTTTAAATAAAATTTA-ATAT
* *
7728599 TTTTTATTAAAATTTAATAT
1 TTTTAAATAAAATTTAATAT
7728619 TTTTA
1 TTTTA
7728624 TAACTTTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTTAAATAAAATTTAATAT
Found at i:7728896 original size:86 final size:86
Alignment explanation
Indices: 7728722--7728905 Score: 205
Period size: 86 Copynumber: 2.1 Consensus size: 86
7728712 ATTAAGGGCG
*
7728722 GTTCAAGTACCCAATTGAGTGCAAAAAAAGGCAGGGTCTTAATTGGTTTTTTGAAAAAGTTTGAT
1 GTTCAAGTACCCAATTGAGTGCAAAAAAA-G-AGGGTCTTAATTGGTTTTTTGAAAAAGTTTGAG
* *
7728787 GACTTTTTTTATACATTTTGAAA
64 GACTTTTTTGATACATTGTGAAA
* * * * * *
7728810 GTTCAAGTGCCTAATTGAGTGCAAAAAAA-AGTG-CTTAATTGCTTTTTTTTTAAGAAGTTTGAG
1 GTTCAAGTACCCAATTGAGTGCAAAAAAAGAGGGTCTTAATTG--GTTTTTTGAAAAAGTTTGAG
7728873 GA-TCTTTTTGATGA-ATTGTGAAA
64 GACT-TTTTTGAT-ACATTGTGAAA
7728896 GTTCAAGTAC
1 GTTCAAGTAC
7728906 TGAAGTGAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
84 8 0.10
85 4 0.05
86 42 0.51
87 1 0.01
88 27 0.33
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (86 bp):
GTTCAAGTACCCAATTGAGTGCAAAAAAAGAGGGTCTTAATTGGTTTTTTGAAAAAGTTTGAGGA
CTTTTTTGATACATTGTGAAA
Found at i:7728938 original size:2 final size:2
Alignment explanation
Indices: 7728933--7728967 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7728923 AGCAAAAATT
7728933 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7728968 TAAGTTTGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7737943 original size:29 final size:29
Alignment explanation
Indices: 7737901--7737962 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
7737891 CATTACAGTG
7737901 GTTAGTTTTTATCAATATCTTTGGTTACT
1 GTTAGTTTTTATCAATATCTTTGGTTACT
7737930 GTTAGTTTTTATCAATATCTTTGGTTACT
1 GTTAGTTTTTATCAATATCTTTGGTTACT
7737959 GTTA
1 GTTA
7737963 AGGATTAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.55
Consensus pattern (29 bp):
GTTAGTTTTTATCAATATCTTTGGTTACT
Found at i:7740436 original size:13 final size:12
Alignment explanation
Indices: 7740415--7740477 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
7740405 AGTAGAGTGA
*
7740415 ATAATAATACTAT
1 ATAAAAATA-TAT
7740428 ATAAAAATATAT
1 ATAAAAATATAT
* *
7740440 ATATACATATAT
1 ATAAAAATATAT
* *
7740452 ATATATATATAT
1 ATAAAAATATAT
* *
7740464 ATATATATATAT
1 ATAAAAATATAT
7740476 AT
1 AT
7740478 GTATGTATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
12 38 0.83
13 8 0.17
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (12 bp):
ATAAAAATATAT
Found at i:7740439 original size:2 final size:2
Alignment explanation
Indices: 7740434--7740488 Score: 83
Period size: 2 Copynumber: 27.5 Consensus size: 2
7740424 CTATATAAAA
*
7740434 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
7740476 AT GT AT GT AT AT A
1 AT AT AT AT AT AT A
7740489 ATAGAAATAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7740710 original size:20 final size:21
Alignment explanation
Indices: 7740647--7740710 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
7740637 TGTGTGCATA
*
7740647 ATATATATTTAGATATTAAAAC
1 ATATATATATAG-TATTAAAAC
* * *
7740669 ATATATACATAATGTATAAAAAG
1 ATATATATAT-A-GTATTAAAAC
7740692 A-ATATATATAGTATTAAAA
1 ATATATATATAGTATTAAAA
7740711 ATGGGAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
20 8 0.24
21 1 0.03
22 15 0.44
23 9 0.26
24 1 0.03
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (21 bp):
ATATATATATAGTATTAAAAC
Found at i:7741599 original size:11 final size:10
Alignment explanation
Indices: 7741577--7741617 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
7741567 CGTGGAAAAT
7741577 AGAAAA-GAA
1 AGAAAATGAA
7741586 AGAAAAATGAA
1 AG-AAAATGAA
7741597 AG-AAATCGAA
1 AGAAAAT-GAA
7741607 AGAAAATGAA
1 AGAAAATGAA
7741617 A
1 A
7741618 TCACATTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
9 6 0.21
10 13 0.46
11 9 0.32
ACGTcount: A:0.71, C:0.02, G:0.20, T:0.07
Consensus pattern (10 bp):
AGAAAATGAA
Found at i:7742395 original size:41 final size:41
Alignment explanation
Indices: 7742318--7742560 Score: 276
Period size: 41 Copynumber: 5.8 Consensus size: 41
7742308 CGCTTCACTG
* * *
7742318 CTCTACCGCAACTTCATGA-A-ATAAGATTTGTGTTGATCTA
1 CTCTACTGCAACTTCA-GAGAGATAAGATCTGTTTTGATCTA
*
7742358 CTCTACTGCAACTTCAGAGAGATAAGATCTGTTTTGATCTG
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTTTTGATCTA
* * *
7742399 CTCTACTACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAA
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGT--TTT-GATCT-A
* * * *
7742444 TCTGTCCACTGCAACTTCAG-GGGAATAAGATTTGTGTTGATCTA
1 -C--TCTACTGCAACTTCAGAGAG-ATAAGATCTGTTTTGATCTA
7742488 CTCTACTGCAACTTCAGAGAGATAAGATCTGTTTTGATCTA
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGTTTTGATCTA
*
7742529 CTCTACTGCAACTTCAAAGAGATAAGATCTGT
1 CTCTACTGCAACTTCAGAGAGATAAGATCTGT
7742561 AATTTTAGCT
Statistics
Matches: 172, Mismatches: 20, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
39 2 0.01
40 16 0.09
41 112 0.65
42 2 0.01
43 4 0.02
44 4 0.02
45 3 0.02
46 3 0.02
47 2 0.01
48 24 0.14
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (41 bp):
CTCTACTGCAACTTCAGAGAGATAAGATCTGTTTTGATCTA
Found at i:7742691 original size:131 final size:129
Alignment explanation
Indices: 7742337--7742681 Score: 433
Period size: 130 Copynumber: 2.6 Consensus size: 129
7742327 AACTTCATGA
* * * * *
7742337 AATAAGATTTGTGTTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTTTGATCTGCTC
1 AATAAGATTTGTCTTCATCTACTCCACTGCAACTTCAGAGAGATAAGATCTGTTTTGATATACTC
* *
7742402 TACT-ACAACTTCAGAGAGATAAGATCTGTAATTTAGCTTTAATCTGTCCACTGCAACTTCAGGG
66 CACTGA-AACTTCAAAGAGA-AAGATCTGTAATTTAGCTTTAATCTGTCCACTGCAACTTCAGGG
7742466 G
129 G
* * * *
7742467 AATAAGATTTGTGTTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTTTGATCTACTC
1 AATAAGATTTGTCTTCATCTACTCCACTGCAACTTCAGAGAGATAAGATCTGTTTTGATATACTC
* *
7742532 TACTGCAACTTCAAAGAGATAAGATCTGTAATTTTAGCTTTAATCTGTCCACTGCAACTTCAGGG
66 CACTGAAACTTCAAAGAGA-AAGATCTGTAA-TTTAGCTTTAATCTGTCCACTGCAACTTCAGGG
7742597 G
129 G
* *
7742598 AATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTTTTGATA
1 AATAAGATTTG---TCTTCA-TCTACTCCACTGCAACTTCAGAGAGATAAGATC-TGTTTTGATA
* *
7742662 TTCTTCCGCTGAAACTTCAA
61 TAC-TCCACTGAAACTTCAA
7742682 GGAAATCTGT
Statistics
Matches: 194, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
130 92 0.47
131 45 0.23
134 5 0.03
135 39 0.20
136 13 0.07
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (129 bp):
AATAAGATTTGTCTTCATCTACTCCACTGCAACTTCAGAGAGATAAGATCTGTTTTGATATACTC
CACTGAAACTTCAAAGAGAAAGATCTGTAATTTAGCTTTAATCTGTCCACTGCAACTTCAGGGG
Found at i:7742796 original size:68 final size:68
Alignment explanation
Indices: 7742670--7743064 Score: 618
Period size: 68 Copynumber: 5.8 Consensus size: 68
7742660 TATTCTTCCG
* * * * * *
7742670 CTGAAACTTCAAGGAAATCTGTTGTGACTTTTTAGTCGTTCCAATGCCATTTCAGGAAGAAGAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGC-TTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGA
7742735 TCCA
65 TCCA
*
7742739 CTGAAACTTCAAGGAGATCTGCTGTAGCTTTTAGCCGCTCCAACGCCATTTCAGGAAG-AG-G-T
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
*
7742801 TCA
66 CCA
* *
7742804 TTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
7742869 CCA
66 CCA
7742872 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
7742937 CCA
66 CCA
7742940 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAA-AAGAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCA-GGAAGAAGAGA
7743004 TCCA
65 TCCA
* ** *
7743008 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATTCCATTTAAGGAA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAA
7743065 AAAATATTTT
Statistics
Matches: 304, Mismatches: 18, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
65 58 0.19
66 3 0.01
67 7 0.02
68 208 0.68
69 28 0.09
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
CCA
Found at i:7755494 original size:2 final size:2
Alignment explanation
Indices: 7755482--7755517 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
7755472 ATAATAATAC
* *
7755482 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7755518 ATAGAAATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7755740 original size:20 final size:21
Alignment explanation
Indices: 7755677--7755740 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
7755667 TGTGTGCATA
*
7755677 ATATATATTTAGATATTAAAAC
1 ATATATATATAG-TATTAAAAC
* * *
7755699 ATATATACATAATGTATAAAAAG
1 ATATATATAT-A-GTATTAAAAC
7755722 A-ATATATATAGTATTAAAA
1 ATATATATATAGTATTAAAA
7755741 ATGGGAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
20 8 0.24
21 1 0.03
22 15 0.44
23 9 0.26
24 1 0.03
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (21 bp):
ATATATATATAGTATTAAAAC
Found at i:7759504 original size:17 final size:17
Alignment explanation
Indices: 7759484--7759516 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
7759474 ATTAAGAATG
7759484 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
7759501 TTATTAAATTATATTT
1 TTATTAAATTATATTT
7759517 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:7759571 original size:14 final size:14
Alignment explanation
Indices: 7759552--7759592 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
7759542 TAAGCTATTT
7759552 ATTATTTTTATTAA
1 ATTATTTTTATTAA
*
7759566 ATTATTTTTAAT-A
1 ATTATTTTTATTAA
*
7759579 A-TAATTTTATTAA
1 ATTATTTTTATTAA
7759592 A
1 A
7759593 ATTTAATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 8 0.35
13 4 0.17
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTATTTTTATTAA
Found at i:7760410 original size:26 final size:26
Alignment explanation
Indices: 7760374--7760507 Score: 225
Period size: 26 Copynumber: 5.2 Consensus size: 26
7760364 ATACAAATTA
7760374 ATAATAGGTTAGGTAAATGTTTCATG
1 ATAATAGGTTAGGTAAATGTTTCATG
*
7760400 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTTCATG
*
7760426 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTTCATG
7760452 ATAAT-GTGTTAGGTAAATGTTTCATG
1 ATAATAG-GTTAGGTAAATGTTTCATG
*
7760478 ATAATGGGTTAGGTAAATGTTTCATG
1 ATAATAGGTTAGGTAAATGTTTCATG
7760504 ATAA
1 ATAA
7760508 GAATTTCATG
Statistics
Matches: 104, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
25 1 0.01
26 102 0.98
27 1 0.01
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAATAGGTTAGGTAAATGTTTCATG
Found at i:7764346 original size:6 final size:5
Alignment explanation
Indices: 7764325--7764359 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
7764315 CGGGCTAAGG
7764325 TTTTC TTTTC TTTTC TTTTTC TTTT- TTTTC TTTTC
1 TTTTC TTTTC TTTTC -TTTTC TTTTC TTTTC TTTTC
7764360 CTATTTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:7764353 original size:15 final size:16
Alignment explanation
Indices: 7764325--7764358 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
7764315 CGGGCTAAGG
7764325 TTTTCTTTTCTTTTCT
1 TTTTCTTTTCTTTTCT
7764341 TTTTCTTTT-TTTTCT
1 TTTTCTTTTCTTTTCT
7764356 TTT
1 TTT
7764359 CCTATTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
TTTTCTTTTCTTTTCT
Found at i:7764435 original size:12 final size:13
Alignment explanation
Indices: 7764396--7764437 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
7764386 ATAATATATT
*
7764396 AAAT-TATATCAA
1 AAATATATATAAA
*
7764408 AAATATATTTTAAA
1 AAATATA-TATAAA
7764422 AAATATATATAAA
1 AAATATATATAAA
7764435 AAA
1 AAA
7764438 CGTACCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 4 0.16
13 10 0.40
14 11 0.44
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATATATATAAA
Found at i:7765227 original size:25 final size:25
Alignment explanation
Indices: 7765172--7765228 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
7765162 CTATCAGCAT
7765172 TTTATTATTATTATTTGTTGTTTAA
1 TTTATTATTATTATTTGTTGTTTAA
* * *
7765197 TATATTATTATTA-TTGTATTTTTTA
1 TTTATTATTATTATTTGT-TGTTTAA
7765222 TTTATTA
1 TTTATTA
7765229 CCACTTCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (25 bp):
TTTATTATTATTATTTGTTGTTTAA
Found at i:7765390 original size:3 final size:3
Alignment explanation
Indices: 7765382--7765744 Score: 145
Period size: 3 Copynumber: 121.3 Consensus size: 3
7765372 ATTGTTACTG
* * * * * *
7765382 TTA TTA TTA TTA TCA CTTG TTA TTA TTC TCA TCA CTA TTA TTA -TA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
7765427 CT- TTA TTA TTG TTA CTTA TTA TT- TTA CTA TTA TTA TT- TAA TATA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * * * * *
7765471 TCA TCA TTA TCA TTA TT- TTCA TTG TAA CTTA ATA GCTTA GTA TTC TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA -TTA TTA --TTA TTA TTA TTA
*
7765519 TTTA TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * ** * *
7765565 TTA TTA TTA TTA TCA TCA CTA TTA TTA CTA TTA GCA CTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * ** * *
7765613 CTA TTA TT- TAA TATA TTA TTT TTA TTA CTA TCG TTA CTA TTA TTG
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
7765658 TTA -TA TTG TTA CTA TTA CTA TCA -TA TTA TTA -TG TTA TTA -TA TCTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * *
7765703 TTA CTA TTA TTA TTA TT- GTA TTT TTA CTA TTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7765745 ATTTTCCTTT
Statistics
Matches: 255, Mismatches: 84, Indels: 42
0.67 0.22 0.11
Matches are distributed among these distances:
2 16 0.06
3 220 0.86
4 17 0.07
5 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:7765415 original size:19 final size:19
Alignment explanation
Indices: 7765380--7765417 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
7765370 CCATTGTTAC
*
7765380 TGTTATTATTATTATCACT
1 TGTTATTATTATCATCACT
*
7765399 TGTTATTATTCTCATCACT
1 TGTTATTATTATCATCACT
7765418 ATTATTATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.55
Consensus pattern (19 bp):
TGTTATTATTATCATCACT
Found at i:7765459 original size:14 final size:13
Alignment explanation
Indices: 7765417--7765464 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
7765407 TTCTCATCAC
*
7765417 TATTATTATACTT
1 TATTATTTTACTT
7765430 TATTATTGTTAC-T
1 TATTATT-TTACTT
7765443 TATTATTTTACTAT
1 TATTATTTTACT-T
7765457 TATTATTT
1 TATTATTT
7765465 AATATATCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 4 0.13
13 15 0.48
14 12 0.39
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (13 bp):
TATTATTTTACTT
Found at i:7765711 original size:23 final size:23
Alignment explanation
Indices: 7765684--7765749 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
7765674 ACTATCATAT
7765684 TATTA-TGTTATTATATCTTTTAC
1 TATTATTGTTATTATAT-TTTTAC
* *
7765707 TATTATTATTATTGTATTTTTAC
1 TATTATTGTTATTATATTTTTAC
7765730 TATTATTGTTATTATATTTT
1 TATTATTGTTATTATATTTT
7765750 CCTTTTTTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
23 29 0.76
24 9 0.24
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.65
Consensus pattern (23 bp):
TATTATTGTTATTATATTTTTAC
Found at i:7766078 original size:3 final size:3
Alignment explanation
Indices: 7765907--7766058 Score: 53
Period size: 3 Copynumber: 50.0 Consensus size: 3
7765897 TAAACTTTAG
* **
7765907 ATT ACTT ATT ATT -TGT ATT ATT GTT ATT ATT ATT -TGT ATTT ACC ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * * * *
7765954 ATT ATT ACT ATT AATT -TC ACTT -TT ATT ACT ATT ACT ATT ATC ATT
1 ATT ATT ATT ATT -ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * * *
7765999 ATT ATT AAT ATA AAT ATT AAT ACT CTT ATT ACT ACTT -TT ATA ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
*
7766044 ATT ATT AAT ATT ATT
1 ATT ATT ATT ATT ATT
7766059 GTTTTACCAC
Statistics
Matches: 104, Mismatches: 33, Indels: 24
0.65 0.20 0.15
Matches are distributed among these distances:
2 7 0.07
3 85 0.82
4 11 0.11
5 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.57
Consensus pattern (3 bp):
ATT
Found at i:7771660 original size:88 final size:88
Alignment explanation
Indices: 7771550--7771718 Score: 239
Period size: 88 Copynumber: 1.9 Consensus size: 88
7771540 GTGACTTCAC
* * * * *
7771550 TCTATTCCGCTAGAACTTCAAGGAGCTACGAATTGTGGCTTCAAACCTCTCTAGTGCTATTTCAG
1 TCTACTCCGCTAGAACTTCAAGGAGATACGAATGGTGGCTTCAAACCTCTCCAGTGCCATTTCAG
7771615 GAAGAAGAAATTTGTAACTTCGA
66 GAAGAAGAAATTTGTAACTTCGA
* ** * *
7771638 TCTACTCCGCTGGAACTTCAAGGAGATACGAATGGTGGCTTTGAGCCTCTCCAGTGCCATTTTAG
1 TCTACTCCGCTAGAACTTCAAGGAGATACGAATGGTGGCTTCAAACCTCTCCAGTGCCATTTCAG
*
7771703 GAAGAAGAGATTTGTA
66 GAAGAAGAAATTTGTA
7771719 GATTCTAGTC
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 70 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (88 bp):
TCTACTCCGCTAGAACTTCAAGGAGATACGAATGGTGGCTTCAAACCTCTCCAGTGCCATTTCAG
GAAGAAGAAATTTGTAACTTCGA
Found at i:7771908 original size:87 final size:87
Alignment explanation
Indices: 7771788--7772318 Score: 646
Period size: 87 Copynumber: 6.1 Consensus size: 87
7771778 ATAAGGAGAC
* * * * *
7771788 AAGATCTGTAA-TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-CCTATCGCCTTCAATTT
1 AAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCT-TCGTCTTCGATCT
*
7771851 GTTTCCCTACTGCATAGGGGGTT
65 GTTTCCCTACTGCTTAGGGGGTT
** * ** *
7771874 AAGATCCATAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG-CCTGTCACCTTTGATCT
1 AAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCT-TCGTCTTCGATCT
* **
7771938 GTTTCCCTACTGCTTAGGGAGAC
65 GTTTCCCTACTGCTTAGGGGGTT
* *
7771961 AAGATCTGTAATTTTTAGCCTGTTACCCTATTGCTTAGGGG-TTAAAGCCCTTCGTCTTCGATCT
1 AAGATCTGTAA-TTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCT
*
7772025 GTTT-CCTACTACTTAGGGGGTT
65 GTTTCCCTACTGCTTAGGGGGTT
* * * * * * *
7772047 AAGATTTGTAAATTCAGCCTATTATCCTACTGTTTAGGGGTTTAAGGCCCTTCGTCTTCAATCTG
1 AAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCTG
* * * **
7772112 -CTCCACTACTGTTTAGGGAGAC
66 TTTCC-CTACTGCTTAGGGGGTT
7772134 AAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCTTCGTCTTCGATCT
1 AAGATCTGTAA-TTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCT
*
7772198 ATTTCCCTACTGCTTAGGGGGTT
65 GTTTCCCTACTGCTTAGGGGGTT
* *
7772221 AAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCTTCATCTTCTATCT
1 AAGATCTGTAATTTT-AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCT
*
7772285 GTTTCCCTACTGCTTAGGAGGTT
65 GTTTCCCTACTGCTTAGGGGGTT
7772308 AAGATCTGTAA
1 AAGATCTGTAA
7772319 ATTCACCGAT
Statistics
Matches: 379, Mismatches: 57, Indels: 17
0.84 0.13 0.04
Matches are distributed among these distances:
85 24 0.06
86 60 0.16
87 238 0.63
88 57 0.15
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (87 bp):
AAGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATCTG
TTTCCCTACTGCTTAGGGGGTT
Found at i:7772044 original size:173 final size:173
Alignment explanation
Indices: 7771782--7772302 Score: 712
Period size: 173 Copynumber: 3.0 Consensus size: 173
7771772 TACTATATAA
* * * * *
7771782 GGAGACAAGATCTGTAA--TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCTATCGCCTT
1 GGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGTTAAAGCCCT-TCGTCTT
* * * **
7771845 CAATTTGTTTCCCTACTGCATAGGGGGTTAAGATCCATAAATTTAGCCTGTTACCCTACTGCTTA
65 CGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTA
*
7771910 GGGGTTTAAGG-CCTGTCACCTTTGATCTGTTTCCCTACTGCTTAG
130 GGGGTTTAAGGCCCT-TCATCTTT-ATCTGTTTCCCTACTGCTTAG
*
7771955 GGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTATTGCTTAGGGGTTAAAGCCCTTCGTCTTC
1 GGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGTTAAAGCCCTTCGTCTTC
* * * * * *
7772020 GATCTGTTT-CCTACTACTTAGGGGGTTAAGATTTGTAAATTCAGCCTATTATCCTACTGTTTAG
66 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAG
* * * *
7772084 GGGTTTAAGGCCCTTCGTCTTCAATCTG-CTCCACTACTGTTTAG
131 GGGTTTAAGGCCCTTCATCTT-TATCTGTTTCC-CTACTGCTTAG
*
7772128 GGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTC
1 GGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGTTAAAGCCCTTCGTCTTC
* *
7772193 GATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
66 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTT-AGCCTGTTACCCTACTGCTTA
7772258 GGGG-TTAAGGCCCTTCATCTTCTATCTGTTTCCCTACTGCTTAG
130 GGGGTTTAAGGCCCTTCATCTT-TATCTGTTTCCCTACTGCTTAG
7772302 G
1 G
7772303 AGGTTAAGAT
Statistics
Matches: 304, Mismatches: 36, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
172 3 0.01
173 164 0.54
174 79 0.26
175 58 0.19
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (173 bp):
GGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGGTTAAAGCCCTTCGTCTTC
GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAG
GGGTTTAAGGCCCTTCATCTTTATCTGTTTCCCTACTGCTTAG
Found at i:7772210 original size:43 final size:42
Alignment explanation
Indices: 7771805--7772310 Score: 181
Period size: 44 Copynumber: 11.6 Consensus size: 42
7771795 GTAATTCAAC
* **
7771805 CTGTTACCCTACTGCTTAGGGGTTTAAGG-CCTATCGCCTTCAAT
1 CTGTTTCCCTACTGCTTAGGGG-TTAAGGCCCT-TCATCTTC-AT
* * * * ** *
7771849 TTGTTTCCCTACTGCATAGGGGGTTAAGATCCATAAAT-TT-AGC
1 CTGTTTCCCTACTGCTTA-GGGGTTAAG-GCCCTTCATCTTCA-T
* * *
7771892 CTGTTACCCTACTGCTTAGGGGTTTAAGG-CCTGTCACCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGG-TTAAGGCCCT-TCATC-TTCAT
** ** * * * *
7771936 CTGTTTCCCTACTGCTTAGGGAGACAA-GATCTGTAATTTTTAGC
1 CTGTTTCCCTACTGCTTAGGG-GTTAAGGCCCT-TCATCTTCA-T
* * * *
7771980 CTGTTACCCTATTGCTTAGGGGTTAAAGCCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTC-AT
* ** * ** *
7772023 CTGTTT-CCTACTACTTAGGGGGTTAA-G-ATTTGTAAATTCAGC
1 CTGTTTCCCTACTGCTTA-GGGGTTAAGGCCCTT-CATCTTCA-T
* * *
7772065 CTATTAT-CCTACTGTTTAGGGGTTTAAGGCCCTTCGTCTTCAAT
1 CTGTT-TCCCTACTGCTTAGGGG-TTAAGGCCCTTCATCTTC-AT
* * ** ** * * * *
7772109 CTG-CTCCACTACTGTTTAGGGAGACAA-GATCTGTAATTTTTAGC
1 CTGTTTCC-CTACTGCTTAGGG-GTTAAGGCCCT-TCATCTTCA-T
* *
7772153 CTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTC-AT
* ** * * *
7772196 CTATTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAATTTTCAGC
1 CTGTTTCCCTACTGCTTA-GGGGTTAAGGCCCT-TCATCTTCA-T
*
7772240 CTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTCTAT
1 CTGTTTCCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTC-AT
7772283 CTGTTTCCCTACTGCTTAGGAGGTTAAG
1 CTGTTTCCCTACTGCTTAGG-GGTTAAG
7772311 ATCTGTAAAT
Statistics
Matches: 328, Mismatches: 98, Indels: 72
0.66 0.20 0.14
Matches are distributed among these distances:
41 5 0.02
42 28 0.09
43 123 0.38
44 158 0.48
45 12 0.04
46 2 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (42 bp):
CTGTTTCCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTCAT
Found at i:7772215 original size:260 final size:261
Alignment explanation
Indices: 7771788--7772323 Score: 724
Period size: 260 Copynumber: 2.1 Consensus size: 261
7771778 ATAAGGAGAC
* *
7771788 AAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCTATCGCCTTCAATTTG
1 AAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCCTATCGCCTTCAATCTG
* * **
7771852 TTTCCCTACTGCATAGGGGGTTAAGATCCATAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTT
66 TCTCCCTACTGCATAGGGAGACAAGATCCATAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTT
* * *
7771917 AAGGCCTGTCACCTTTGATCTGTTTCCCTACTGCTTAGGGAGACAAGATCTGTAATTTTTAGCCT
131 AAGGCCTGTCACCTTCGATCTATTTCCCTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCT
* * *
7771982 GTTACCCTATTGCTTAGGGGTTAAAGCCCTTCGTCTTCGATCTGTTT-CCTACTACTTAGGGGGT
196 GTTACCCTACTGCTTAGGGGTTAAAGCCCTTCATCTTCGATCTGTTTCCCTACTACTTAGGAGGT
7772046 T
261 T
* * * * *
7772047 AAGATTTGTAAATTCAGCCTATTATCCTACTGTTTAGGGGTTTAAGGCCCT-TCGTCTTCAATCT
1 AAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGG-CCTATCGCCTTCAATCT
** ** *
7772111 G-CTCCACTACTGTTTAGGGAGACAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTAGGGG
65 GTCTCC-CTACTGCATAGGGAGACAAGATCCATAA-ATTTAGCCTGTTACCCTACTGCTTAGGGG
** * **
7772175 -TTAAGGCCCT-TCGTCTTCGATCTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAATTTTCA
128 TTTAAGG-CCTGTCACCTTCGATCTATTTCCCTACTGCTTAGGGAGACAAGATCTGTAATTTTCA
* * *
7772238 GCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCTTCATCTTCTATCTGTTTCCCTACTGCTTAGG
192 GCCTGTTACCCTACTGCTTAGGGGTTAAAGCCCTTCATCTTCGATCTGTTTCCCTACTACTTAGG
7772303 AGGTT
257 AGGTT
7772308 AAGATCTGTAAATTCA
1 AAGATCTGTAAATTCA
7772324 CCGATCTTGG
Statistics
Matches: 240, Mismatches: 31, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
259 11 0.05
260 164 0.68
261 65 0.27
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (261 bp):
AAGATCTGTAAATTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCCTATCGCCTTCAATCTG
TCTCCCTACTGCATAGGGAGACAAGATCCATAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTT
AAGGCCTGTCACCTTCGATCTATTTCCCTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCT
GTTACCCTACTGCTTAGGGGTTAAAGCCCTTCATCTTCGATCTGTTTCCCTACTACTTAGGAGGT
T
Found at i:7774288 original size:26 final size:26
Alignment explanation
Indices: 7774259--7774310 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7774249 CTTAACAGTA
7774259 CTTGATCTTTCCTTCTTTTGTATAGG
1 CTTGATCTTTCCTTCTTTTGTATAGG
7774285 CTTGATCTTTCCTTCTTTTGTATAGG
1 CTTGATCTTTCCTTCTTTTGTATAGG
7774311 ATCTCCCCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.12, C:0.19, G:0.15, T:0.54
Consensus pattern (26 bp):
CTTGATCTTTCCTTCTTTTGTATAGG
Found at i:7780405 original size:9 final size:9
Alignment explanation
Indices: 7780383--7780418 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7780373 TGCAATGCTG
7780383 ATGC-ATGA
1 ATGCAATGA
*
7780391 ATGCAATGG
1 ATGCAATGA
7780400 ATGCAATGA
1 ATGCAATGA
7780409 ATGCAATGA
1 ATGCAATGA
7780418 A
1 A
7780419 AGAAAAAGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 4 0.16
9 21 0.84
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.22
Consensus pattern (9 bp):
ATGCAATGA
Found at i:7784424 original size:3 final size:3
Alignment explanation
Indices: 7784405--7785031 Score: 142
Period size: 3 Copynumber: 209.3 Consensus size: 3
7784395 AAGATAATAC
* * * *
7784405 AAT AAT -AT AAT AGT AAT AAT AAC AAT -AT AAT AAT AAT AGT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * **
7784451 AGT AAT AAA AAT AAT -AT ATT AAAT AAT AGT AAT AAA AAT AGT GCT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
7784496 AAT AGT AAT AAT AGT GAT AAT AAT AAT AGCAC GAT AA- AAT AAG AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A--AT AAT AAT AAT AAT AAT
* * * * *
7784542 AGT AA- AAT AAT GAT ATT AAT ACCT AA- ACAT AA- ATCT AGAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT A-AT AAT A-AT A-AT AAT AAT
* *
7784587 ACCT AA- AAT -AT AAT AAT AAT GAA- AAT -AT AAAT ACAT AAG AA- ATAT
1 A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT -AAT A-AT AAT AAT A-AT
* ** *
7784632 AAAT AGAT GAAT GAT AGG AA- AAT AA- ACAT AGAT AAA AAT AAT AAT
1 -AAT A-AT -AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT AAT AAT
* * * * * * * * * **
7784677 AAT AGT CAT AAT -AC AAT AGT AAT AGT AAT TAC AAA AAT GAT AAT AGC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** * *
7784724 AAT AA- AAT AA- GAT AAT AAT AAT AAT AAT AAC CGT AAT AGT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
7784770 AAA AAT -AC AAT AAT AAT -AT ATT AAAT AACA AAT AAT AAT AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AA-T AAT AAT AAT AAT AAT
* * * * *
7784815 AAT AATT AA- AA- AAT GAT AAT AGT AAT AAA AAT AAA AAT AAT AGT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** *
7784859 AAT GAT AAT ACATT AAG AAT AAT AAT -AT GTT AAT AAT AAT AA- ATT
1 AAT AAT AAT A-A-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
7784904 AAT GAATT AAT AAC AA- AAC AGT AAGT AAAT AA- ACAC AAA AAT AA-
1 AAT -AA-T AAT AAT AAT AAT AAT AA-T -AAT AAT A-AT AAT AAT AAT
* * * *
7784948 AAT -AT AAT TAT AAT AGT AAT ATT AAC AA- AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
7784994 AAT AAT AAT AAT AAT AAT GAT AAG AGAT AAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT A
7785032 TATTAATTTA
Statistics
Matches: 434, Mismatches: 136, Indels: 108
0.64 0.20 0.16
Matches are distributed among these distances:
2 49 0.11
3 333 0.77
4 44 0.10
5 8 0.02
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:7784447 original size:23 final size:22
Alignment explanation
Indices: 7784398--7784485 Score: 60
Period size: 20 Copynumber: 4.2 Consensus size: 22
7784388 ATAGGTAAAG
*
7784398 ATAATACAATAATATAATAGTA
1 ATAATACAATAATATAATAATA
*
7784420 ATAAT--AACAATATAATAATA
1 ATAATACAATAATATAATAATA
* * *
7784440 ATAGT--AATGATAGTAATAAAA
1 ATAATACAATAATA-TAATAATA
* * *
7784461 ATAATATATTAA-ATAATAGTA
1 ATAATACAATAATATAATAATA
7784482 ATAA
1 ATAA
7784486 AAATAGTGCT
Statistics
Matches: 52, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
20 22 0.42
21 21 0.40
22 6 0.12
23 3 0.06
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (22 bp):
ATAATACAATAATATAATAATA
Done.