Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 290 of 427
Found at i:83468508 original size:32 final size:33
Alignment explanation
Indices: 83468467--83468530 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
83468457 TTCTTCTTGA
*
83468467 CATTCCAGCTCCTGTCCAGCAA-CCAACACTCC
1 CATTCCAGCTCCTGTCCAGCAATCAAACACTCC
83468499 CATTCCAGCTCCTGTCCAGCAATCAAACACTC
1 CATTCCAGCTCCTGTCCAGCAATCAAACACTC
83468531 TCACTCAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 22 0.73
33 8 0.27
ACGTcount: A:0.27, C:0.44, G:0.09, T:0.20
Consensus pattern (33 bp):
CATTCCAGCTCCTGTCCAGCAATCAAACACTCC
Found at i:83479198 original size:64 final size:64
Alignment explanation
Indices: 83479118--83479244 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
83479108 CATTCATAAT
* *
83479118 ACATCTAGTTAGGAGCACTT-GATTCATTTTAATCATAGCATCCTAATTATTTGACATAAGCATC
1 ACATCTAGCTAGGAGCACTTGGATT-ATTTCAATCATAGCATCCTAATTATTTGACATAAGCATC
* * *
83479182 ACATCTAGCTAGGAGCACTTGGATTATTTCGATCATAGCATCCTAGTTATTTGGCATAAGCAT
1 ACATCTAGCTAGGAGCACTTGGATTATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
83479245 AGATACATGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 53 0.93
65 4 0.07
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (64 bp):
ACATCTAGCTAGGAGCACTTGGATTATTTCAATCATAGCATCCTAATTATTTGACATAAGCATC
Found at i:83479483 original size:45 final size:45
Alignment explanation
Indices: 83479434--83479521 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
83479424 AAGCAGACTA
*
83479434 AAAATTACAGA-TCTTATCTCCATGTATCAGCTATGGAGCAGATCG
1 AAAA-TACAGAGTCTTATCTCCATGTATCAGCTATGGAACAGATCG
** *
83479479 AAAATGGAGAGTCTTATCTCCATGTATCGGCTATGGAACAGAT
1 AAAATACAGAGTCTTATCTCCATGTATCAGCTATGGAACAGAT
83479522 TTCAACCACC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 4 0.11
45 34 0.89
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (45 bp):
AAAATACAGAGTCTTATCTCCATGTATCAGCTATGGAACAGATCG
Found at i:83479599 original size:45 final size:45
Alignment explanation
Indices: 83479535--83479677 Score: 193
Period size: 45 Copynumber: 3.2 Consensus size: 45
83479525 AACCACCACC
83479535 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGTAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGTAAGT
* *
83479580 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGTAAGT
* * * *
83479625 CTTATCTTCCTAAAGTTGCAG-GAAGCAGACTGAAAG-TTGT-AGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAAGATAGTAAG-T
83479669 CTTATCTCC
1 CTTATCTCC
83479678 ATGTATCGGC
Statistics
Matches: 87, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.02
44 20 0.23
45 65 0.75
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGTAAGT
Found at i:83479673 original size:134 final size:132
Alignment explanation
Indices: 83479556--83480014 Score: 514
Period size: 134 Copynumber: 3.4 Consensus size: 132
83479546 GAAGTTGCAG
*
83479556 TGGAGCAGACTAAAGATAGTAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
1 TGGAGCAGACTAAA-AT-GCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * *
83479621 AAGTCTTATCTTCCTAAAGTTGCAGGAAGCAGACTGAAAGTTGTAGATCTTATCTCCATGTATCG
64 AAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTATAGATCTTATCTCCATGTATCG
83479686 GCTA
129 GCTA
* ** * * * ** **
83479690 TGGAGCAGA-TCAGAAATGGCGAGTCTTATCTCTATGTA-TCGGCTA-TGGAGCAGATTTTAGCC
1 TGGAGCAGACT-A-AAAT-GCAAGTCTTATCTCCCTGAAGT-TGC-AGTGGAGCAGACTGAAGAT
* *
83479752 A-CTAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTTATAGATTTTATCTCCATGT
61 AGCAAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAA-TTATAGATCTTATCTCCATGT
83479816 ATCGGCTA
125 ATCGGCTA
* *
83479824 TGGAGTAGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
1 TGGAGCAGA-CTAAAATG-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
* * * *
83479889 AAGTCTTATTTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCA
64 AAGTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTATAGATCTTATCTCCATGTATCG
83479954 GCTA
129 GCTA
* ** * * * * *
83479958 TGGAGCAGATCTCAGCTACTATTCTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAA
1 TGGAGCAGA-CTAAAATGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA
83480015 AATTACAGAT
Statistics
Matches: 269, Mismatches: 45, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
132 12 0.04
133 65 0.24
134 149 0.55
135 43 0.16
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (132 bp):
TGGAGCAGACTAAAATGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAA
GTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTATAGATCTTATCTCCATGTATCGGC
TA
Found at i:83479810 original size:223 final size:221
Alignment explanation
Indices: 83479358--83480033 Score: 707
Period size: 223 Copynumber: 3.0 Consensus size: 221
83479348 GATTAAAAAC
* * * *
83479358 CTTATCTCCCTGAAGCTGTAGTGGAGCAGGTTGAAG-TGACAAGTCTTATCTTCTTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATGAAGATGACAAGTCTTATCTTCCTGAAGTTGCA
* * * *
83479422 GGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCGAAAATGGA
65 GGAAGCAGACTGAAAGTTGCAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCGAAAATGGC
* * * * *
83479487 GAGTCTTATCTCCATGTATCGGCTATGGAACAGATTTCAACCACCACCCTTATCTCCCTGAAGTT
130 GAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTCAGCCACTACTCTTATCTTCCTGAAGTT
* *
83479552 GCAGTGGAGCAGACT-AAAGATAGTAAG-T
195 GCAG-GAAGCAGACTGAAA-AT-TTAAGAT
*
83479580 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGCAAGTCTTATCTTCCTAAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TGAAGATGA-CAAGTCTTATCTTCCTGAAGTTGC
* *
83479644 AGGAAGCAGACTGAAAGTTGTAGATCTTATCTCCATGTATCGGCTATGGAGCAGATC-AGAAATG
64 AGGAAGCAGACTGAAAGTTGCAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCGA-AAATG
* * *
83479708 GCGAGTCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAG
128 GCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTCAGCCACTACTCTTATCTTCCTGAAG
83479773 TTGCAGGAAGCAGACTGAAAATTTATAGAT
193 TTGCAGGAAGCAGACTGAAAATTTA-AGAT
* * * * * * *
83479803 TTTATCTCCATGTA-TCGGCTA-TGGAGTAGATCGAAAATGACAAGTCTTATCTCCCTGAAGTTG
1 CTTATCTCCCTGAAGT-TGC-AGTGGAGCAGAT-GAAGATGACAAGTCTTATCTTCCTGAAGTTG
* * * * * * *
83479866 CAGTGGAGCAGACTG-AAGATAGCA-AGTCTTATTTTCC-TGAAGT-TGC-AAGAAGCAGA-CTG
63 CAG-GAAGCAGACTGAAAG-TTGCAGA-TCTTA-TCTCCATGTA-TCAGCTATGGAGCAGATC-G
** * * * *
83479925 AAAATTAC-AGATCTTATCTCCATGTATCAGCTATGGAGCAGATCTCAGCTACTATTCTTATCTT
122 AAAATGGCGAG-TCTTATCTCCATGTATCGGCTATGGAGCAGATTTCAGCCACTACTCTTATCTT
83479989 CCTGAAGTTGCAGGAAGCAGACTGAAAA-TTACAGAT
186 CCTGAAGTTGCAGGAAGCAGACTGAAAATTTA-AGAT
83480025 CTTATCTCC
1 CTTATCTCC
83480034 ATGTAACGGC
Statistics
Matches: 388, Mismatches: 47, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
221 3 0.01
222 66 0.17
223 288 0.74
224 26 0.07
225 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (221 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATGAAGATGACAAGTCTTATCTTCCTGAAGTTGCAG
GAAGCAGACTGAAAGTTGCAGATCTTATCTCCATGTATCAGCTATGGAGCAGATCGAAAATGGCG
AGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTCAGCCACTACTCTTATCTTCCTGAAGTTG
CAGGAAGCAGACTGAAAATTTAAGAT
Found at i:83479940 original size:44 final size:45
Alignment explanation
Indices: 83479835--83479945 Score: 122
Period size: 45 Copynumber: 2.5 Consensus size: 45
83479825 GGAGTAGATC
* *
83479835 GAAAAT-GACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
1 GAAAATAG-CAAGTCTTATCTCCCTGAAGTTGCAGAGAAGCAGACT
* * *
83479880 GAAGATAGCAAGTCTTATTTTCCTGAAGTTGCA-AGAAGCAGACT
1 GAAAATAGCAAGTCTTATCTCCCTGAAGTTGCAGAGAAGCAGACT
83479924 GAAAATTA-C-AGATCTTATCTCC
1 GAAAA-TAGCAAG-TCTTATCTCC
83479946 ATGTATCAGC
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.04
44 22 0.40
45 30 0.55
46 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (45 bp):
GAAAATAGCAAGTCTTATCTCCCTGAAGTTGCAGAGAAGCAGACT
Found at i:83479944 original size:89 final size:88
Alignment explanation
Indices: 83479869--83480049 Score: 249
Period size: 88 Copynumber: 2.0 Consensus size: 88
83479859 GAAGTTGCAG
*
83479869 TGGAGCAGA-CTGAAGATAGCAAGTCTTATTTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTAC
1 TGGAGCAGATCT-AAGATA-CAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTAC
*
83479933 AGATCTTATCTCCATGTATCAGCTA
64 AGATCTTATCTCCATGAATCAGCTA
* * * * *
83479958 TGGAGCAGATCTCAGCTACTATTCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAG
1 TGGAGCAGATCTAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAG
*
83480023 ATCTTATCTCCATGTAA-CGGCTA
66 ATCTTATCTCCATG-AATCAGCTA
83480046 TGGA
1 TGGA
83480050 ATGGATCTTG
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
88 66 0.80
89 14 0.17
90 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (88 bp):
TGGAGCAGATCTAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAG
ATCTTATCTCCATGAATCAGCTA
Found at i:83480072 original size:88 final size:88
Alignment explanation
Indices: 83479892--83480085 Score: 264
Period size: 88 Copynumber: 2.2 Consensus size: 88
83479882 AGATAGCAAG
* *
83479892 TCTTATTTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCAGCT
1 TCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTAACAGCT
* *
83479957 ATGGAGCAGATCTCAGCTACTAT
66 ATGGAACAGATCTCAGCCACTAT
* *
83479980 TCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTAACGGCT
1 TCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTAACAGCT
** ** *
83480045 ATGGAATGGATCTTGGCCATTGA-
66 ATGGAACAGATCTCAGCCACT-AT
*
83480068 TCTTATCTCCCTGAAGTT
1 TCTTATCTTCCTGAAGTT
83480086 ACAATGGGGC
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 92 0.99
89 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (88 bp):
TCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTAACAGCT
ATGGAACAGATCTCAGCCACTAT
Found at i:83482493 original size:126 final size:126
Alignment explanation
Indices: 83482281--83482560 Score: 323
Period size: 126 Copynumber: 2.2 Consensus size: 126
83482271 GTTCGAGGGG
* * * * *
83482281 TCGTGCCCAATCGTGCCGGGTTTCGATTTTTCGTTTAACTAAAATACGGAATATCCTTTGGAATT
1 TCGTGCCCAATCGTGCCAGGTTTCGATTTTTCGATGAACTAAAATACAGAATATCCTTTGGAAAT
*
83482346 TTCGTCCATGCTTTTAAAAATTAAAATGAGGCAATATTTCATATTTGGGGAGTTTGGGAGA
66 TTCATCCATGCTTTTAAAAATTAAAATGAGGCAATATTTCATATTTGGGGAGTTTGGGAGA
* * *
83482407 TCGTGCCCAATCGTGCTAGGTTTCGATTTTTC-ATGAGACTAAAGTACAGAATATCCTTTTGAAA
1 TCGTGCCCAATCGTGCCAGGTTTCGATTTTTCGATGA-ACTAAAATACAGAATATCCTTTGGAAA
* ** * * * * * ** *
83482471 TTTCATCCGTG-TTTTCTCAAATTAAAATGAGGCATTGTTTCATATTT-GGAAATTCGATAAA
65 TTTCATCCATGCTTTT-AAAAATTAAAATGAGGCAATATTTCATATTTGGGGAGTTTGGGAGA
* *
83482532 TCGTGCCCAATCGTGCCGGGTTTTGATTT
1 TCGTGCCCAATCGTGCCAGGTTTCGATTT
83482561 ACCGTTTGGG
Statistics
Matches: 129, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
125 40 0.31
126 89 0.69
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.37
Consensus pattern (126 bp):
TCGTGCCCAATCGTGCCAGGTTTCGATTTTTCGATGAACTAAAATACAGAATATCCTTTGGAAAT
TTCATCCATGCTTTTAAAAATTAAAATGAGGCAATATTTCATATTTGGGGAGTTTGGGAGA
Found at i:83483216 original size:42 final size:41
Alignment explanation
Indices: 83483098--83483248 Score: 124
Period size: 42 Copynumber: 3.6 Consensus size: 41
83483088 CATACCAATG
* * *
83483098 CCATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATG
1 CCATATCCCAGATATGGTCTTACAAG-AATCTCATATCGATA
* * *
83483140 CCAATAGCCCA-ACTATGGTCTTAAAAAAAATCTCATATCGATA
1 CC-ATATCCCAGA-TATGGTCTT-ACAAGAATCTCATATCGATA
* * * * *
83483183 CCATATCCCAGATATGATCTTACACGAAGTCTCATATTGTTG
1 CCATATCCCAGATATGGTCTTACAAGAA-TCTCATATCGATA
* * *
83483225 TCATATCCCAAATATGGTATTACA
1 CCATATCCCAGATATGGTCTTACA
83483249 CATAGACTTA
Statistics
Matches: 86, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
41 4 0.05
42 48 0.56
43 32 0.37
44 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (41 bp):
CCATATCCCAGATATGGTCTTACAAGAATCTCATATCGATA
Found at i:83484991 original size:28 final size:29
Alignment explanation
Indices: 83484960--83485033 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
83484950 ATAGAATTTT
83484960 CCAC-AAGACATTCC-TTTAACAGAGATAG
1 CCACAAAGACA-TCCTTTTAACAGAGATAG
*
83484988 CCACAAAGGCATCCTTTTAACAGAGATAG
1 CCACAAAGACATCCTTTTAACAGAGATAG
* * *
83485017 CCATAAAGGCTTCCTTT
1 CCACAAAGACATCCTTT
83485034 GACAAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
28 7 0.17
29 34 0.83
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (29 bp):
CCACAAAGACATCCTTTTAACAGAGATAG
Found at i:83485014 original size:29 final size:28
Alignment explanation
Indices: 83484970--83485251 Score: 223
Period size: 29 Copynumber: 10.0 Consensus size: 28
83484960 CCACAAGACA
83484970 TTCCTTTAACAGAGATAGCCACAAAGGC
1 TTCCTTTAACAGAGATAGCCACAAAGGC
* *
83484998 ATCCTTTTAACAGAGATAGCCATAAAGGC
1 TTCC-TTTAACAGAGATAGCCACAAAGGC
* * * * *
83485027 TTCCTTTGACAAAAAAAACCACAAAGGC
1 TTCCTTTAACAGAGATAGCCACAAAGGC
* * *
83485055 ATTCATTTAATAGAGATCA-CCACAAAGGT
1 -TTCCTTTAACAGAGAT-AGCCACAAAGGC
* *
83485084 TTTCTTATAACAGAGATCGCCACAAAGGC
1 TTCCTT-TAACAGAGATAGCCACAAAGGC
* * * *
83485113 TTTCATTTAACAAAGATCGCCATAAAGGC
1 -TTCCTTTAACAGAGATAGCCACAAAGGC
* * * *
83485142 TTCCTATAACAGAGATCGTCATAAAGGC
1 TTCCTTTAACAGAGATAGCCACAAAGGC
* * * *
83485170 TTTCATTTAATAGAGATCGCCATAAAGGC
1 -TTCCTTTAACAGAGATAGCCACAAAGGC
* * *
83485199 TTCCTTT-A-ATAGACAGTCACAAAGGC
1 TTCCTTTAACAGAGATAGCCACAAAGGC
*
83485225 TTCCTTT--TAGAGATAGCCACAAAGGC
1 TTCCTTTAACAGAGATAGCCACAAAGGC
83485251 T
1 T
83485252 CACTTATATG
Statistics
Matches: 204, Mismatches: 42, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
26 36 0.18
27 1 0.00
28 55 0.27
29 107 0.52
30 5 0.02
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.26
Consensus pattern (28 bp):
TTCCTTTAACAGAGATAGCCACAAAGGC
Found at i:83485031 original size:57 final size:57
Alignment explanation
Indices: 83484970--83485207 Score: 253
Period size: 57 Copynumber: 4.2 Consensus size: 57
83484960 CCACAAGACA
* * *
83484970 TTCCTTTAACAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCATAAAGGC
1 TTCCTTTAACAGAGATAGCCACAAAGGCTTTCATTTAACAGAGATAGCCATAAAGGC
* * * * * * * * *
83485027 TTCCTTTGACAAAAAAAACCACAAAGGCATTCATTTAATAGAGATCA-CCACAAAGGT
1 TTCCTTTAACAGAGATAGCCACAAAGGCTTTCATTTAACAGAGAT-AGCCATAAAGGC
* * * *
83485084 TTTCTTATAACAGAGATCGCCACAAAGGCTTTCATTTAACAAAGATCGCCATAAAGGC
1 TTCCTT-TAACAGAGATAGCCACAAAGGCTTTCATTTAACAGAGATAGCCATAAAGGC
* * * * * *
83485142 TTCCTATAACAGAGATCGTCATAAAGGCTTTCATTTAATAGAGATCGCCATAAAGGC
1 TTCCTTTAACAGAGATAGCCACAAAGGCTTTCATTTAACAGAGATAGCCATAAAGGC
83485199 TTCCTTTAA
1 TTCCTTTAA
83485208 TAGACAGTCA
Statistics
Matches: 148, Mismatches: 30, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
57 105 0.71
58 43 0.29
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.26
Consensus pattern (57 bp):
TTCCTTTAACAGAGATAGCCACAAAGGCTTTCATTTAACAGAGATAGCCATAAAGGC
Found at i:83485080 original size:86 final size:86
Alignment explanation
Indices: 83484960--83485207 Score: 259
Period size: 86 Copynumber: 2.9 Consensus size: 86
83484950 ATAGAATTTT
* * * *
83484960 CCAC-AAGACATTCCTTTAACAGAGAT-AGCCACAAAGGCATCCTTTTAACAGAGATAGCCATAA
1 CCACAAAGGCATTCCTTTAACAGAGATCA-CCACAAAGGCTTTCTTTTAACAGAGATCGCCATAA
*
83485023 AGGCTTCCTTTGACAAAAAAAA
65 AGGCTTCCTTTAACAAAAAAAA
* * * * *
83485045 CCACAAAGGCATTCATTTAATAGAGATCACCACAAAGGTTTTCTTATAACAGAGATCGCCACAAA
1 CCACAAAGGCATTCCTTTAACAGAGATCACCACAAAGGCTTTCTTTTAACAGAGATCGCCATAAA
* * ***
83485110 GGCTTTCATTTAACAAAGATCG
66 GGC-TTCCTTTAACAAAAAAAA
* * ** * * *
83485132 CCATAAAGGC-TTCCTATAACAGAGATCGTCATAAAGGCTTTCATTTAATAGAGATCGCCATAAA
1 CCACAAAGGCATTCCTTTAACAGAGATCACCACAAAGGCTTTCTTTTAACAGAGATCGCCATAAA
83485196 GGCTTCCTTTAA
66 GGCTTCCTTTAA
83485208 TAGACAGTCA
Statistics
Matches: 132, Mismatches: 28, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
85 12 0.09
86 98 0.74
87 22 0.17
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (86 bp):
CCACAAAGGCATTCCTTTAACAGAGATCACCACAAAGGCTTTCTTTTAACAGAGATCGCCATAAA
GGCTTCCTTTAACAAAAAAAA
Found at i:83485178 original size:115 final size:115
Alignment explanation
Indices: 83484976--83485197 Score: 282
Period size: 115 Copynumber: 1.9 Consensus size: 115
83484966 GACATTCCTT
* * * *
83484976 TAACAGAGATAGCCACAAAGGCATCCTTTTAACAGAGATAGCCATAAAGGCTTCCTTTGACAAAA
1 TAACAGAGATAGCCACAAAGGCATCCATTTAACAAAGATAGCCATAAAGGCTTCCTATAACAAAA
83485041 AAAACCACAAAGGCATTCATTTAATAGAGATCACCACAAAGGTTTTCTTA
66 AAAACCACAAAGGCATTCATTTAATAGAGATCACCACAAAGGTTTTCTTA
* * * * * *
83485091 TAACAGAGATCGCCACAAAGGCTTTCATTTAACAAAGATCGCCATAAAGGCTTCCTATAACAGAG
1 TAACAGAGATAGCCACAAAGGCATCCATTTAACAAAGATAGCCATAAAGGCTTCCTATAACAAAA
**** * * * *
83485156 ATCGTCATAAAGGCTTTCATTTAATAGAGATCGCCATAAAGG
66 AAAACCACAAAGGCATTCATTTAATAGAGATCACCACAAAGG
83485198 CTTCCTTTAA
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
115 89 1.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (115 bp):
TAACAGAGATAGCCACAAAGGCATCCATTTAACAAAGATAGCCATAAAGGCTTCCTATAACAAAA
AAAACCACAAAGGCATTCATTTAATAGAGATCACCACAAAGGTTTTCTTA
Found at i:83505578 original size:173 final size:174
Alignment explanation
Indices: 83505289--83505635 Score: 669
Period size: 173 Copynumber: 2.0 Consensus size: 174
83505279 ACAAGGTAGC
83505289 AGTTGAGATTAGACTATAAACAAGCGCTTCTCAGGAGGCAACCTGAATACTAACGGTTTTAAATT
1 AGTTGAGATTAGACTATAAACAAGCGCTTCTCAGGAGGCAACCTGAATACTAACGGTTTTAAATT
83505354 ATTTACATTTCAAGTTTTAAACATTTAGGTCACTAACAGAGTACTTAAAGCACAGGTT-CCAACT
66 ATTTACATTTCAAGTTTTAAACATTTAGGTCACTAACAGAGTACTTAAAGCACAGGTTCCCAACT
83505418 CCACACGGCCTAGAACACGGCCGTGCTTAAGGCCGTGTGACCAA
131 CCACACGGCCTAGAACACGGCCGTGCTTAAGGCCGTGTGACCAA
*
83505462 AGTTGAGATTAGACTATAAACAAGCGCTTCTCGGGAGGCAACCTGAATACTAACGGTTTTAAATT
1 AGTTGAGATTAGACTATAAACAAGCGCTTCTCAGGAGGCAACCTGAATACTAACGGTTTTAAATT
83505527 ATTTACATTTCAAGTTTTAAACATTTAGGTCACTAACAGAGTACTTAAAGCACAGGTTCCCAACT
66 ATTTACATTTCAAGTTTTAAACATTTAGGTCACTAACAGAGTACTTAAAGCACAGGTTCCCAACT
*
83505592 TCACACGGCCTAGAACACGGCCGTGCTTAAGGCCGTGTGACCAA
131 CCACACGGCCTAGAACACGGCCGTGCTTAAGGCCGTGTGACCAA
83505636 CACGGATAGA
Statistics
Matches: 171, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
173 122 0.71
174 49 0.29
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (174 bp):
AGTTGAGATTAGACTATAAACAAGCGCTTCTCAGGAGGCAACCTGAATACTAACGGTTTTAAATT
ATTTACATTTCAAGTTTTAAACATTTAGGTCACTAACAGAGTACTTAAAGCACAGGTTCCCAACT
CCACACGGCCTAGAACACGGCCGTGCTTAAGGCCGTGTGACCAA
Found at i:83511239 original size:29 final size:29
Alignment explanation
Indices: 83511207--83511279 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
83511197 CTTCGAGCTC
*
83511207 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
83511236 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
83511265 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
83511280 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:83519289 original size:29 final size:29
Alignment explanation
Indices: 83519257--83519329 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
83519247 CTTCGAGCTC
*
83519257 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
83519286 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
83519315 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
83519330 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:83522241 original size:33 final size:33
Alignment explanation
Indices: 83522202--83522268 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
83522192 ATAAAATTAA
83522202 TAAAAAGGGGAAATGAAGGAAAAAATTAGCCAT
1 TAAAAAGGGGAAATGAAGGAAAAAATTAGCCAT
83522235 TAAAAAGGGGAAATGAAGGAAAAAATTAGCCAT
1 TAAAAAGGGGAAATGAAGGAAAAAATTAGCCAT
83522268 T
1 T
83522269 CTTCTCCCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.54, C:0.06, G:0.24, T:0.16
Consensus pattern (33 bp):
TAAAAAGGGGAAATGAAGGAAAAAATTAGCCAT
Found at i:83525029 original size:55 final size:55
Alignment explanation
Indices: 83524929--83525035 Score: 139
Period size: 55 Copynumber: 1.9 Consensus size: 55
83524919 CTACATTTCT
* *
83524929 AAGTCAGGCTCGACCACGACCAAGGCACATGGGCGTGTGGCTGGCCGTGTGACCC
1 AAGTCAGGCTCGACCACGACCAAGACACATGGGCGTCTGGCTGGCCGTGTGACCC
*
83524984 AAGTCAGTG-TCGACCACG-CCAAGACACATGGGCATGTCTTG-TGGCCGTGTGA
1 AAGTCAG-GCTCGACCACGACCAAGACACATGGGC--GTCTGGCTGGCCGTGTGA
83525036 ATAAGATAGT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
54 14 0.30
55 27 0.59
56 5 0.11
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (55 bp):
AAGTCAGGCTCGACCACGACCAAGACACATGGGCGTCTGGCTGGCCGTGTGACCC
Found at i:83535210 original size:15 final size:15
Alignment explanation
Indices: 83535192--83535226 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
83535182 ATAAACATTA
83535192 AAATAATAATAAAAT
1 AAATAATAATAAAAT
83535207 AAATAATAATAAAAT
1 AAATAATAATAAAAT
83535222 AAATA
1 AAATA
83535227 TTTTAACTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAATAATAAAAT
Found at i:83539430 original size:41 final size:41
Alignment explanation
Indices: 83539385--83539465 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
83539375 AGAATGAGTA
83539385 AGTGAAATCCATTCAAAATATTCAAAATGTCCCTTATAAGT
1 AGTGAAATCCATTCAAAATATTCAAAATGTCCCTTATAAGT
83539426 AGTGAAATCCATTCAAAATATTCAAAATGTCCCTTATAAG
1 AGTGAAATCCATTCAAAATATTCAAAATGTCCCTTATAAG
83539466 GCTCTACGAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (41 bp):
AGTGAAATCCATTCAAAATATTCAAAATGTCCCTTATAAGT
Found at i:83540976 original size:43 final size:42
Alignment explanation
Indices: 83540911--83541074 Score: 181
Period size: 43 Copynumber: 3.8 Consensus size: 42
83540901 AGCTCGTACA
* * *
83540911 ATGCCATATCCCAGATATGGTCTTACATGTTATCATATATCG
1 ATGCCATGTCCCAGACATGGTCTTACATGTAATCATATATCG
* *
83540953 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATCATATAAT-G
1 ATGCCA-TGTCCCAGACATGGTCTTACATGTAATCATAT-ATCG
*
83540996 ATGCCTATGTCCCAGACATGGTCTTACATGTAATGACA-ATA-CA
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAAT--CATATATCG
* *
83541039 ATACCAATGTTCCAGACATGGTCTTACATGTAATCA
1 ATGCC-ATGTCCCAGACATGGTCTTACATGTAATCA
83541075 CCTCTCGATA
Statistics
Matches: 105, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 90 0.86
44 5 0.05
45 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACATGTAATCATATATCG
Found at i:83541064 original size:86 final size:85
Alignment explanation
Indices: 83540911--83541074 Score: 206
Period size: 86 Copynumber: 1.9 Consensus size: 85
83540901 AGCTCGTACA
* * * * *
83540911 ATGCCATATCCCAGATATGGTCTTACATGTTATCATATATCGATGCCACTGTCCCAGACAGGGTC
1 ATGCCATATCCCAGACATGGTCTTACATGTAATCATATATCAATACCAATGTCCCAGACAGGGTC
83540976 TTACATGAAATCATATAATG
66 TTACATGAAATCATATAATG
* * *
83540996 ATGCCTATGTCCCAGACATGGTCTTACATGTAATGACA-ATA-CAATACCAATGTTCCAGACATG
1 ATGCC-ATATCCCAGACATGGTCTTACATGTAAT--CATATATCAATACCAATGTCCCAGACAGG
*
83541059 GTCTTACATGTAATCA
63 GTCTTACATGAAATCA
83541075 CCTCTCGATA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
85 5 0.07
86 57 0.85
87 3 0.04
88 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (85 bp):
ATGCCATATCCCAGACATGGTCTTACATGTAATCATATATCAATACCAATGTCCCAGACAGGGTC
TTACATGAAATCATATAATG
Found at i:83545433 original size:40 final size:40
Alignment explanation
Indices: 83545370--83545588 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
83545360 ATTCGGATTG
*
83545370 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
83545409 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
83545449 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
83545489 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
83545529 ATAACCGGGCTAAGTCCCGAAGGC-ATTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* *
83545568 ATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
83545589 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
37 8 0.05
38 8 0.05
39 29 0.17
40 125 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:83552793 original size:2 final size:2
Alignment explanation
Indices: 83552786--83552810 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
83552776 TCTATGCACT
83552786 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
83552811 GGTATTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:83553511 original size:40 final size:40
Alignment explanation
Indices: 83553402--83553618 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
83553392 ATTCGGATTG
83553402 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83553441 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
83553480 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83553520 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83553560 ATAACCGGGCTAAGT-CCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
83553599 AT-ACC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
83553619 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
37 13 0.08
38 5 0.03
39 71 0.43
40 77 0.46
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:83561526 original size:40 final size:40
Alignment explanation
Indices: 83561463--83561720 Score: 375
Period size: 39 Copynumber: 6.6 Consensus size: 40
83561453 ATTCGGATTG
83561463 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83561502 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83561542 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
83561582 ATAA-CGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
83561621 ATAACC-GGCGAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83561660 ATAACC-GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
83561699 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
83561721 TACTTGGTTG
Statistics
Matches: 205, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 2 0.01
39 135 0.66
40 68 0.33
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:83575843 original size:39 final size:39
Alignment explanation
Indices: 83575796--83575935 Score: 235
Period size: 39 Copynumber: 3.6 Consensus size: 39
83575786 GGACTAAGAT
83575796 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
*
83575835 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * *
83575874 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
83575914 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
83575936 CTATAACCGG
Statistics
Matches: 96, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 74 0.77
40 22 0.23
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:83575936 original size:40 final size:39
Alignment explanation
Indices: 83575796--83575964 Score: 232
Period size: 39 Copynumber: 4.3 Consensus size: 39
83575786 GGACTAAGAT
*
83575796 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
83575835 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
83575874 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAG-C
* * *
83575914 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGTTAAG-C
83575954 CCGAAGGCATT
1 CCGAAGGCATT
83575965 TGAGCTAGTC
Statistics
Matches: 122, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 74 0.61
40 39 0.32
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
Found at i:83577890 original size:40 final size:40
Alignment explanation
Indices: 83577846--83577991 Score: 136
Period size: 40 Copynumber: 3.6 Consensus size: 40
83577836 GCCACTCGTT
* * *
83577846 CAAATACCTTCGGGACATGGCCC-GATTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
* *
83577886 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * * * * *
83577926 CAAATGCCTT-TGGATCTTAGTCCGGATTTAGTCACTTAGAA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAAC-TCGCA
*
83577967 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
83577992 CATCATTCGA
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.03
40 72 0.81
41 14 0.16
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:83581924 original size:71 final size:71
Alignment explanation
Indices: 83581838--83582001 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83581828 CGATTTGTCT
83581838 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83581903 CTTTCA
66 CTTTCA
83581909 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83581974 CTTTCA
66 CTTTCA
83581980 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
83582002 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:83589498 original size:71 final size:71
Alignment explanation
Indices: 83589412--83589575 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83589402 CGATTTGTCT
83589412 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83589477 CTTTCA
66 CTTTCA
83589483 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
83589548 CTTTCA
66 CTTTCA
83589554 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
83589576 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:83589613 original size:71 final size:70
Alignment explanation
Indices: 83589412--83589609 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
83589402 CGATTTGTCT
* * * *
83589412 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
83589477 CTTTCA
65 CTTTCA
* * * *
83589483 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
83589548 CTTTCA
65 CTTTCA
* *
83589554 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
83589610 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:83591496 original size:6 final size:5
Alignment explanation
Indices: 83591485--83591539 Score: 58
Period size: 6 Copynumber: 10.2 Consensus size: 5
83591475 AAGAAAAAGA
83591485 AAAAT AAGAAT AAAAT AAAAT AAAAAT AAGAAT -AAAT AAAAAT AAAAAT
1 AAAAT AA-AAT AAAAT AAAAT -AAAAT AA-AAT AAAAT -AAAAT -AAAAT
83591534 AAAAT A
1 AAAAT A
83591540 GGAGGATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
4 3 0.07
5 19 0.42
6 23 0.51
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:83591506 original size:16 final size:16
Alignment explanation
Indices: 83591485--83591539 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
83591475 AAGAAAAAGA
*
83591485 AAAATAAGAATAAAAT
1 AAAATAAAAATAAAAT
83591501 AAAATAAAAATAAGAAT
1 AAAATAAAAATAA-AAT
83591518 -AAATAAAAATAAAAAT
1 AAAATAAAAAT-AAAAT
83591534 AAAATA
1 AAAATA
83591540 GGAGGATTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
16 25 0.71
17 10 0.29
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (16 bp):
AAAATAAAAATAAAAT
Found at i:83591509 original size:22 final size:23
Alignment explanation
Indices: 83591473--83591539 Score: 95
Period size: 22 Copynumber: 3.0 Consensus size: 23
83591463 TTGAAAAATC
* *
83591473 AAAAGAAAAAGAAAAATAAGAAT
1 AAAATAAAAATAAAAATAAGAAT
83591496 AAAAT-AAAATAAAAATAAGAAT
1 AAAATAAAAATAAAAATAAGAAT
83591518 -AAATAAAAATAAAAATAA-AAT
1 AAAATAAAAATAAAAATAAGAAT
83591539 A
1 A
83591540 GGAGGATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.17
22 29 0.73
23 4 0.10
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (23 bp):
AAAATAAAAATAAAAATAAGAAT
Found at i:83596643 original size:5 final size:5
Alignment explanation
Indices: 83596633--83596657 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
83596623 ATACATAGTA
83596633 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
83596658 GGAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:83610312 original size:24 final size:24
Alignment explanation
Indices: 83610280--83610350 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
83610270 CTGTCAGGAG
83610280 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
83610304 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
83610328 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
83610351 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:83610362 original size:48 final size:48
Alignment explanation
Indices: 83610280--83610373 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
83610270 CTGTCAGGAG
** * *
83610280 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
83610328 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
83610374 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:83610540 original size:27 final size:27
Alignment explanation
Indices: 83610416--83610528 Score: 154
Period size: 27 Copynumber: 4.0 Consensus size: 27
83610406 TGGGAATTTG
*
83610416 GGCTAGGGTTAGTGCGAGTATAAATTC
1 GGCTAGGGTTAGTGCCAGTATAAATTC
*
83610443 GGCATTAGTGGTAAGTGGTGCCAGTATAAATTC
1 GGC--TAG-GGT---TAGTGCCAGTATAAATTC
83610476 GGCTAGGGTTAGTGCCAGTATAAATTC
1 GGCTAGGGTTAGTGCCAGTATAAATTC
83610503 GGCTAGGGTTAGTGCCAGTATAAATT
1 GGCTAGGGTTAGTGCCAGTATAAATT
83610529 TGACTTTTGT
Statistics
Matches: 77, Mismatches: 3, Indels: 12
0.84 0.03 0.13
Matches are distributed among these distances:
27 46 0.60
29 3 0.04
30 6 0.08
31 3 0.04
33 19 0.25
ACGTcount: A:0.27, C:0.12, G:0.31, T:0.30
Consensus pattern (27 bp):
GGCTAGGGTTAGTGCCAGTATAAATTC
Found at i:83611490 original size:27 final size:26
Alignment explanation
Indices: 83611450--83611561 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
83611440 AGGAAGCATC
*
83611450 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
83611477 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
83611504 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
83611532 CTGGTGACTCTGTCTCATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
83611558 CTGG
1 CTGG
83611562 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 51 0.70
28 15 0.21
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:83611554 original size:54 final size:54
Alignment explanation
Indices: 83611450--83611561 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
83611440 AGGAAGCATC
*
83611450 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * * *
83611504 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCTCAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
83611558 CTGG
1 CTGG
83611562 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:83616979 original size:14 final size:14
Alignment explanation
Indices: 83616960--83616989 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
83616950 AACTAAGGAG
*
83616960 TACAAAATTAAAAA
1 TACAAAAATAAAAA
83616974 TACAAAAATAAAAA
1 TACAAAAATAAAAA
83616988 TA
1 TA
83616990 ATCAAAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (14 bp):
TACAAAAATAAAAA
Found at i:83620561 original size:47 final size:49
Alignment explanation
Indices: 83620344--83620646 Score: 456
Period size: 49 Copynumber: 6.3 Consensus size: 49
83620334 GTATGAGATA
83620344 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
83620393 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
83620442 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
83620491 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* *
83620538 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
83620585 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
83620632 TATAAATGTGATAAG
1 TATATATGTGATAAG
83620647 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 99 0.41
48 5 0.02
49 138 0.57
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:83642180 original size:43 final size:43
Alignment explanation
Indices: 83642100--83642190 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 43
83642090 ATCGTATAAC
* * *
83642100 GCCAATGTCCCAGACGTGGTCTTACATGTAGCTACATATCGAT
1 GCCATTGTCCCAGACGTGGTCTTACATGTAACTACATATCAAT
83642143 GCCATTGTCCCAGACAG-GGTCTTAC-TCGTAAAC-ACATATCAAT
1 GCCATTGTCCCAGAC-GTGGTCTTACAT-GT-AACTACATATCAAT
83642186 GCCAT
1 GCCAT
83642191 GGTCTTACTC
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
42 1 0.02
43 38 0.90
44 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
GCCATTGTCCCAGACGTGGTCTTACATGTAACTACATATCAAT
Found at i:83666225 original size:27 final size:27
Alignment explanation
Indices: 83666195--83666254 Score: 93
Period size: 28 Copynumber: 2.2 Consensus size: 27
83666185 AAAACCCTAG
83666195 GGGTATATCGGTAATTTTGCTCTTTAA
1 GGGTATATCGGTAATTTTGCTCTTTAA
* *
83666222 GGGTAATTTCGGTAATTTTGCTCTTTAG
1 GGGT-ATATCGGTAATTTTGCTCTTTAA
83666250 GGGTA
1 GGGTA
83666255 ATTTCGTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.20, C:0.10, G:0.27, T:0.43
Consensus pattern (27 bp):
GGGTATATCGGTAATTTTGCTCTTTAA
Found at i:83666234 original size:28 final size:28
Alignment explanation
Indices: 83666202--83666260 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
83666192 TAGGGGTATA
83666202 TCGGTAATTTTGCTCTTTAAGGGTAATT
1 TCGGTAATTTTGCTCTTTAAGGGTAATT
*
83666230 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAAGGGTAATT
83666258 TCG
1 TCG
83666261 TGATCTACGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.12, G:0.24, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAAGGGTAATT
Found at i:83667361 original size:13 final size:13
Alignment explanation
Indices: 83667343--83667367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83667333 AGTTTCGGCT
83667343 AGAGAGGAAAAAA
1 AGAGAGGAAAAAA
83667356 AGAGAGGAAAAA
1 AGAGAGGAAAAA
83667368 CAACCCTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AGAGAGGAAAAAA
Found at i:83670207 original size:28 final size:28
Alignment explanation
Indices: 83670167--83670229 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
83670157 AACAAGCTAC
*
83670167 CATCATCAAATAAGCTGAGACGGGCAAA
1 CATCACCAAATAAGCTGAGACGGGCAAA
83670195 CATCACCAAATAAGCTGAGACGGGCAAA
1 CATCACCAAATAAGCTGAGACGGGCAAA
83670223 CATCACC
1 CATCACC
83670230 CTTTGATCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.41, C:0.27, G:0.19, T:0.13
Consensus pattern (28 bp):
CATCACCAAATAAGCTGAGACGGGCAAA
Found at i:83672086 original size:8 final size:8
Alignment explanation
Indices: 83672073--83672105 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
83672063 AAAGTGGGCT
83672073 CGTTGGCC
1 CGTTGGCC
83672081 CGTTGGCC
1 CGTTGGCC
83672089 CGTTGGCC
1 CGTTGGCC
83672097 CGTTGGCC
1 CGTTGGCC
83672105 C
1 C
83672106 ATTTTCGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.39, G:0.36, T:0.24
Consensus pattern (8 bp):
CGTTGGCC
Found at i:83672945 original size:50 final size:50
Alignment explanation
Indices: 83672870--83672970 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
83672860 ACCCCTTTAC
83672870 TCTTAAAAGCCCAAATGCCAATTGCATCACCTGTTCATAAAATTAAAATT
1 TCTTAAAAGCCCAAATGCCAATTGCATCACCTGTTCATAAAATTAAAATT
*
83672920 TCTTAAAAGCCCAAATGGCAATTGCATCACCTGTTCATAAAATTAAAATT
1 TCTTAAAAGCCCAAATGCCAATTGCATCACCTGTTCATAAAATTAAAATT
83672970 T
1 T
83672971 TGAAGACTAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (50 bp):
TCTTAAAAGCCCAAATGCCAATTGCATCACCTGTTCATAAAATTAAAATT
Found at i:83685503 original size:20 final size:20
Alignment explanation
Indices: 83685478--83685515 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
83685468 GTTTATTCGC
*
83685478 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
83685498 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
83685516 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:83687184 original size:28 final size:28
Alignment explanation
Indices: 83687143--83687208 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
83687133 TAGAACACGA
* *
83687143 AATTA-CCCTTAAAGAGCAAAATTACCG
1 AATTACCCCTAAAAGAACAAAATTACCG
83687170 AATTACCCCTAAAAGAACAAAATTACCG
1 AATTACCCCTAAAAGAACAAAATTACCG
83687198 -ATATACCCCTA
1 AAT-TACCCCTA
83687209 GGGTTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 7 0.20
28 28 0.80
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
AATTACCCCTAAAAGAACAAAATTACCG
Found at i:83699796 original size:48 final size:48
Alignment explanation
Indices: 83699736--83700196 Score: 480
Period size: 48 Copynumber: 9.6 Consensus size: 48
83699726 ATGCTAAGTC
83699736 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
* * ** * * *
83699784 CCAAACATGGTCTCACACTGGCTCAT-ATATCGAGGGCGATGCCATGTC
1 CCAAACATGGTCTTACACTAGCTC-TCATATAAATGCCGATGCCATGTT
* * * *
83699832 CCAGACATGGTCTTACACTAACTCTCATATAAATACCAATGCCATGTT
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
* ** * *
83699880 CCAAACA-GGATCTTACACTGGCTCAT-ATATCGAGGTCGATGCCATGTT
1 CCAAACATGG-TCTTACACTAGCTC-TCATATAAATGCCGATGCCATGTT
**
83699928 CCAAACATGGTCTTACACTAGCTCTCATATAAATGTTGATGCCATGTT
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
* * ** * *
83699976 CCAAACATGGTCTTACACTGGCTCACATATCGAGGTCGATGCCATGTT
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
* * * * ** * *
83700024 CTAACCAAGTTCTTATGCTAGCTCTAATATAAATGTCGATGCCATGTT
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
* ** *
83700072 CCAAACATGGTCTTACACT-GACTCACATATCGAGGCCGATGCCATGTT
1 CCAAACATGGTCTTACACTAG-CTCTCATATAAATGCCGATGCCATGTT
* * * *
83700120 CCAAACATGGTCTTCCACTAGCTCTCATATAAATGCCAATGCCCTATT
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
* *
83700168 CCAAACATGGTCTTACACTGGCTCACATA
1 CCAAACATGGTCTTACACTAGCTCTCATA
83700197 ACCCTAGTAT
Statistics
Matches: 332, Mismatches: 73, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
47 5 0.02
48 322 0.97
49 5 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (48 bp):
CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTT
Found at i:83699898 original size:96 final size:96
Alignment explanation
Indices: 83699736--83700196 Score: 681
Period size: 96 Copynumber: 4.8 Consensus size: 96
83699726 ATGCTAAGTC
*
83699736 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGGTCTCACA
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGGTCTTACA
* * *
83699801 CTGGCTCATATATCGAGGGCGATGCCATGTC
66 CTGGCTCACATATCGAGGTCGATGCCATGTT
* * * *
83699832 CCAGACATGGTCTTACACTAACTCTCATATAAATACCAATGCCATGTTCCAAACA-GGATCTTAC
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGG-TCTTAC
*
83699896 ACTGGCTCATATATCGAGGTCGATGCCATGTT
65 ACTGGCTCACATATCGAGGTCGATGCCATGTT
**
83699928 CCAAACATGGTCTTACACTAGCTCTCATATAAATGTTGATGCCATGTTCCAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGGTCTTACA
83699993 CTGGCTCACATATCGAGGTCGATGCCATGTT
66 CTGGCTCACATATCGAGGTCGATGCCATGTT
* * * * ** * *
83700024 CTAACCAAGTTCTTATGCTAGCTCTAATATAAATGTCGATGCCATGTTCCAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGGTCTTACA
* *
83700089 CTGACTCACATATCGAGGCCGATGCCATGTT
66 CTGGCTCACATATCGAGGTCGATGCCATGTT
* * * *
83700120 CCAAACATGGTCTTCCACTAGCTCTCATATAAATGCCAATGCCCTATTCCAAACATGGTCTTACA
1 CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGGTCTTACA
83700185 CTGGCTCACATA
66 CTGGCTCACATA
83700197 ACCCTAGTAT
Statistics
Matches: 326, Mismatches: 37, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
95 2 0.01
96 322 0.99
97 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (96 bp):
CCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGGTCTTACA
CTGGCTCACATATCGAGGTCGATGCCATGTT
Found at i:83705343 original size:27 final size:27
Alignment explanation
Indices: 83705283--83705343 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
83705273 TGTACCTGAA
* *
83705283 CCCTTATGAGACAAAATGAATATTTTT
1 CCCTTATGAGACAAAATGAAGATTTTG
* * * *
83705310 CCTTTATGTGATAAAATGACGATTTTG
1 CCCTTATGAGACAAAATGAAGATTTTG
83705337 CCCTTAT
1 CCCTTAT
83705344 AAGGTAAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (27 bp):
CCCTTATGAGACAAAATGAAGATTTTG
Found at i:83705367 original size:27 final size:27
Alignment explanation
Indices: 83705337--83705435 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
83705327 GACGATTTTG
83705337 CCCTTATAAGGTAAAATGACCGAAATA
1 CCCTTATAAGGTAAAATGACCGAAATA
* * *
83705364 CCC-TATAAGTTAAAATGACTGTAATA
1 CCCTTATAAGGTAAAATGACCGAAATA
* *
83705390 CCCCTGTAAGGTAAAATGACC-ATAATA
1 CCCTTATAAGGTAAAATGACCGA-AATA
*
83705417 CCCTTGTAAGGTAAAATGA
1 CCCTTATAAGGTAAAATGA
83705436 ATTATTTGCC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 23 0.37
27 39 0.63
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (27 bp):
CCCTTATAAGGTAAAATGACCGAAATA
Found at i:83714506 original size:79 final size:80
Alignment explanation
Indices: 83714352--83714574 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 80
83714342 TCGAATGATG
* * * *
83714352 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATT-CGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATTCCGGGCTAAGACCCGAAGGCAT
83714415 TGGTGCGAGTCACTAAA
64 TGGTGCGAGTCACTAAA
*
83714432 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGACCCGAAGGCATT
83714495 GGTGCGAGTCACTAAA
65 GGTGCGAGTCACTAAA
* * * * *
83714511 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGACCCGAAGGCATT
83714575 TGAACGAGTA
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 3 0.02
79 72 0.57
80 44 0.35
81 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGACCCGAAGGCATTG
GTGCGAGTCACTAAA
Found at i:83714575 original size:40 final size:40
Alignment explanation
Indices: 83714352--83714576 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
83714342 TCGAATGATG
* * *
83714352 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAA
* * *
83714392 TTCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAA
* * *
83714432 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAA
*
83714472 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
83714511 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AA
* *
83714552 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83714577 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 34 0.21
40 117 0.73
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
Found at i:83714575 original size:119 final size:120
Alignment explanation
Indices: 83714352--83714576 Score: 271
Period size: 119 Copynumber: 1.9 Consensus size: 120
83714342 TCGAATGATG
* * * *
83714352 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATTCGGACTAAGATCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTG
*
83714417 GTGCGAGTCACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
66 GTGCGAGTCACTAAATCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAT
* **
83714472 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
83714534 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCAAAGGCATTTG
64 TGGTGCGAGTCACTA-AATCCGGACTAAGAT-CCAAAGGCATTTG
83714577 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
118 2 0.02
119 68 0.76
120 19 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATTG
GTGCGAGTCACTAAATCCGGACTAAGATCCAAAGGCATTTGTGCGAGTTACTAAT
Found at i:83714598 original size:79 final size:79
Alignment explanation
Indices: 83714352--83714599 Score: 229
Period size: 79 Copynumber: 3.1 Consensus size: 79
83714342 TCGAATGATG
* * * * * * *
83714352 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATTCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-CCCAAAGGCAT
**
83714415 TGGTGCGAGTCACTAAA
63 TGGAACGAGTCACTAAA
** * *
83714432 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTG
**
83714496 GTGCGAGTCACTAAA
65 GAACGAGTCACTAAA
*
83714511 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATT
* *
83714575 TGAACGAGT-AGCTATA
64 GGAACGAGTCA-CTAAA
83714591 TCC-GGTTAA
1 TCCGGGTTAA
83714600 ATTTCGAAGG
Statistics
Matches: 145, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.02
79 76 0.52
80 56 0.39
81 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGG
AACGAGTCACTAAA
Found at i:83715897 original size:2 final size:2
Alignment explanation
Indices: 83715892--83715920 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
83715882 GTAAAAAAAA
83715892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83715921 GGTGAATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:83721004 original size:55 final size:53
Alignment explanation
Indices: 83720881--83721081 Score: 206
Period size: 55 Copynumber: 3.7 Consensus size: 53
83720871 CTTACCATTT
* * * * *
83720881 CCATGTCTTTACATGGTCTTACGTGGTATCCTTGCCTTATA-AACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTTACCTTATAGAACTCATCAATG
* * *
83720934 CCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAGTAACTCATTAATG
1 CCATGCCTTGACATGGTCTTACATGGTACC-TTACCTTATAG-AACTCATCAATG
* * * *
83720989 CCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATG-GTACCTTACCTTATAGAACTCATCAATG
* * * *
83721043 ACATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 CCATGCCTTGACATGGTCTTACATGGTA-CCTTACCTTA
83721082 CCAAATGCCA
Statistics
Matches: 122, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 33 0.27
54 41 0.34
55 44 0.36
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (53 bp):
CCATGCCTTGACATGGTCTTACATGGTACCTTACCTTATAGAACTCATCAATG
Found at i:83721068 original size:54 final size:54
Alignment explanation
Indices: 83720892--83721081 Score: 231
Period size: 54 Copynumber: 3.5 Consensus size: 54
83720882 CATGTCTTTA
* * * *
83720892 CATGGTCTTACGTGGTATCCTTGCCTTATA-AACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGCCTTGG
** * * *
83720945 CATGGTCTTACATGGGA-CCTTTACCTTATAGTAACTCATTAATGCCATGTCTTGA
1 CATGGTCTTACATGATATCC-TTACCTTATAG-AACTCATCAATGCCATGCCTTGG
* * *
83721000 CATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGACATGCCTTGG
1 CATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGCCTTGG
*
83721054 CATGGTCTTACATGATATCCTTATCTTA
1 CATGGTCTTACATGATATCCTTACCTTA
83721082 CCAAATGCCA
Statistics
Matches: 116, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 24 0.21
54 44 0.38
55 44 0.38
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTACCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:83721317 original size:44 final size:44
Alignment explanation
Indices: 83721268--83721351 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
83721258 TCCTTAACCG
* *
83721268 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCCA
* * *
83721312 TCAATTCTTCTTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
83721352 GAGATATCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 32 0.94
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCCA
Found at i:83723211 original size:185 final size:184
Alignment explanation
Indices: 83722899--83723270 Score: 717
Period size: 185 Copynumber: 2.0 Consensus size: 184
83722889 CTTTAAAGAG
83722899 CAAATAGCCTTTTATTAATGAGATGGCCGGCCATAGGGAAACAGAAAATCAAAATGTCAAGGTTA
1 CAAATAGCCTTTTATTAATGAGATGGCCGGCCATAGGGAAACAGAAAATCAAAATGTCAAGGTTA
*
83722964 GGTGAGTTTTTGGTGACTTATTTGACTAAAATAAAATAAAGAAAAGGAAGGCTATAGTGTTATTC
66 GGTGAGTTTTCGGTGACTTATTTGACTAAAATAAAATAAAGAAAAGGAAGGCTATAGTGTTATTC
83723029 TTCTCCACCGAAATTCTCAGAAAAAATAAGGGTTTTTGGAGCTTAAAACTTCAGC
131 TTCTCCACCGAAATTCTCAG-AAAAATAAGGGTTTTTGGAGCTTAAAACTTCAGC
*
83723084 CAAATAGCCTTTTATTAATGAGATGGCCGGCCATAGGGACACAGAAAATCAAAATGTCAAGGTTA
1 CAAATAGCCTTTTATTAATGAGATGGCCGGCCATAGGGAAACAGAAAATCAAAATGTCAAGGTTA
83723149 GGTGAGTTTTCGGTGACTTATTTGACTAAAATAAAATAAAGAAAAGGAAGGCTATAGTGTTATTC
66 GGTGAGTTTTCGGTGACTTATTTGACTAAAATAAAATAAAGAAAAGGAAGGCTATAGTGTTATTC
83723214 TTCTCCACCGAAATTCTCAGAAAAATAAGGGTTTTTGGAGCTTAAAACTTCAGC
131 TTCTCCACCGAAATTCTCAGAAAAATAAGGGTTTTTGGAGCTTAAAACTTCAGC
83723268 CAA
1 CAA
83723271 GCTATCCTCT
Statistics
Matches: 185, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
184 37 0.20
185 148 0.80
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.28
Consensus pattern (184 bp):
CAAATAGCCTTTTATTAATGAGATGGCCGGCCATAGGGAAACAGAAAATCAAAATGTCAAGGTTA
GGTGAGTTTTCGGTGACTTATTTGACTAAAATAAAATAAAGAAAAGGAAGGCTATAGTGTTATTC
TTCTCCACCGAAATTCTCAGAAAAATAAGGGTTTTTGGAGCTTAAAACTTCAGC
Found at i:83725132 original size:68 final size:70
Alignment explanation
Indices: 83725060--83725257 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
83725050 ACACCCTGTA
* * * *
83725060 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
83725122 ATAAAT
65 ATAAAT
*
83725128 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
83725193 ATAAAT
65 ATAAAT
*
83725199 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
83725258 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:83725171 original size:41 final size:41
Alignment explanation
Indices: 83725126--83725243 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
83725116 TGAAAGATAA
83725126 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
83725167 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
83725197 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
83725238 ATGTAG
1 ATGTAG
83725244 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:83725183 original size:71 final size:71
Alignment explanation
Indices: 83725094--83725257 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83725084 GAGATGTATC
83725094 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83725159 AGGACA
66 AGGACA
83725165 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83725230 AGGACA
66 AGGACA
83725236 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
83725258 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:83732698 original size:68 final size:70
Alignment explanation
Indices: 83732626--83732823 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
83732616 ACACCCTGTA
* * * *
83732626 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
83732688 ATAAAT
65 ATAAAT
*
83732694 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
83732759 ATAAAT
65 ATAAAT
*
83732765 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
83732824 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:83732737 original size:41 final size:41
Alignment explanation
Indices: 83732692--83732809 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
83732682 TGAAAGATAA
83732692 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
83732733 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
83732763 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
83732804 ATGTAG
1 ATGTAG
83732810 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:83732749 original size:71 final size:71
Alignment explanation
Indices: 83732660--83732823 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
83732650 GAGATGTATC
83732660 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83732725 AGGACA
66 AGGACA
83732731 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
83732796 AGGACA
66 AGGACA
83732802 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
83732824 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:83734428 original size:48 final size:47
Alignment explanation
Indices: 83734353--83734619 Score: 208
Period size: 48 Copynumber: 5.6 Consensus size: 47
83734343 TGATATGTGT
* *
83734353 GCTAGTGTAAGACCATGTTTGGAACATGGCATCTGCCATATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATATTATGAGA
* * * * *
83734401 GCTAGTGAAAGACCATGTCTGGGACATGGCA-C-CAATGTTCATATGTGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCAT-AT--TATGAGA
* * *
83734449 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACAATATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATATTATGAGA
* * * *
83734497 GCTGGTGTAAGACCATGTTTGGAACATGGCATCG--GTATTGA-GACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATATT-ATG---AGA
* *
83734545 GCTAGTGTGAGACCATGTCTGGGACATGGCATCGGCC-TCGA-CATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCAT--ATTATG-AGA
*
83734593 GCCAGTGTAAGACCATGTCTGGGACAT
1 GCTAGTGTAAGACCATGTCTGGGACAT
83734620 AGTGTCGGCA
Statistics
Matches: 173, Mismatches: 30, Indels: 32
0.74 0.13 0.14
Matches are distributed among these distances:
45 6 0.03
46 2 0.01
47 2 0.01
48 154 0.89
49 3 0.02
50 2 0.01
51 3 0.02
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATATTATGAGA
Found at i:83734509 original size:96 final size:96
Alignment explanation
Indices: 83734345--83734619 Score: 300
Period size: 96 Copynumber: 2.9 Consensus size: 96
83734335 CATTTGAGTG
* * * * * * *
83734345 ATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATCTGCCATATTATGAGAGCTAGTGAA
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCTAGTGTA
*
83734410 AGACCATGTCTGGGACATGGCACCAATGTTC
66 AGACCATGTCTGGGACATGGCACCAATATTC
* * *
83734441 ATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACAATATGAGAGCTGGTGTA
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCTAGTGTA
* * * ** *
83734506 AGACCATGTTTGGAACATGGCATCGGTATTG
66 AGACCATGTCTGGGACATGGCACCAATATTC
* *** * * * * *
83734537 AGACAAGAGCTAGTGTGAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTA-AGCCAGTGT
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATG-AGAGCTAGTGT
83734601 AAGACCATGTCTGGGACAT
65 AAGACCATGTCTGGGACAT
83734620 AGTGTCGGCA
Statistics
Matches: 148, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
96 147 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCTAGTGTA
AGACCATGTCTGGGACATGGCACCAATATTC
Found at i:83734605 original size:144 final size:142
Alignment explanation
Indices: 83734357--83734628 Score: 336
Period size: 144 Copynumber: 1.9 Consensus size: 142
83734347 ATGTGTGCTA
83734357 GTGTAAGACCATGTTTGGAACATGGCATCTGCCATATTATGAGAGCTAGTGAAAGACCATGTCTG
1 GTGTAAGACCATGTTTGGAACATGGCATCTG-CATATTATGAGAGCTAGTGAAAGACCATGTCTG
* * * ** * *
83734422 GGACATGGCACCAATGTTCATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCA
65 GGACATGGCACC-AGGCTCACATGTAAGCCAGTGTAAGACCATGTCTGGGACATAGCGTCGGCCA
83734487 CAATATGAGAGCTG
129 CAATATGAGAGCTG
* **
83734501 GTGTAAGACCATGTTTGGAACATGGCATC-G-GTATTGA-GACAAGAGCTAGTGTGAGACCATGT
1 GTGTAAGACCATGTTTGGAACATGGCATCTGCATATT-ATG---AGAGCTAGTGAAAGACCATGT
* *
83734563 CTGGGACATGGCATC-GGCCTCGACATGTAAGCCAGTGTAAGACCATGTCTGGGACATAGTGTCG
62 CTGGGACATGGCACCAGG-CTC-ACATGTAAGCCAGTGTAAGACCATGTCTGGGACATAGCGTCG
83734627 GC
125 GC
83734629 AATTTGCTCT
Statistics
Matches: 110, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
141 5 0.05
142 2 0.02
143 3 0.03
144 100 0.91
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (142 bp):
GTGTAAGACCATGTTTGGAACATGGCATCTGCATATTATGAGAGCTAGTGAAAGACCATGTCTGG
GACATGGCACCAGGCTCACATGTAAGCCAGTGTAAGACCATGTCTGGGACATAGCGTCGGCCACA
ATATGAGAGCTG
Found at i:83757884 original size:105 final size:101
Alignment explanation
Indices: 83757706--83757902 Score: 331
Period size: 105 Copynumber: 1.9 Consensus size: 101
83757696 ATGTTATAGA
*
83757706 TATTTTTCGGGTTGAATCAGGTGAACCAGATAGCTTTTACTGATTTCTTCTATGACTGCTGTGAA
1 TATTTTTAGGGTTGAATCAGGTGAACCAGATAGCTTTTACTGATTTCTTCTATGACTGCTGTGAA
*
83757771 ATATATGAGAAGAGGGTATAAGTCTTAACTTGCGTT
66 ATATATGAGAAAAGGGTATAAGTCTTAACTTGCGTT
*
83757807 TATTTTTAGGGTTGAATCAGGTGAACCAGATAGCTTACCTGTACTGGTTTCTTCTATGACTGCTG
1 TATTTTTAGGGTTGAATCAGGTGAACCAGATAGCTT---T-TACTGATTTCTTCTATGACTGCTG
83757872 TGAAATATATGAGAAAAGGGTATAAGTCTTA
62 TGAAATATATGAGAAAAGGGTATAAGTCTTA
83757903 TCTCGCATTT
Statistics
Matches: 89, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
101 35 0.39
104 1 0.01
105 53 0.60
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.37
Consensus pattern (101 bp):
TATTTTTAGGGTTGAATCAGGTGAACCAGATAGCTTTTACTGATTTCTTCTATGACTGCTGTGAA
ATATATGAGAAAAGGGTATAAGTCTTAACTTGCGTT
Found at i:83760394 original size:46 final size:46
Alignment explanation
Indices: 83760341--83760516 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
83760331 TATTTGGGCA
83760341 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
83760387 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGAT-TTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* *
83760432 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
83760480 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83760517 GTGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 7 0.06
43 4 0.04
45 2 0.02
46 61 0.55
47 25 0.23
48 2 0.02
50 3 0.03
51 7 0.06
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:83760496 original size:93 final size:93
Alignment explanation
Indices: 83760337--83760507 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
83760327 TAGATATTTG
* *
83760337 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAACTCGTTGAG
83760402 TTGAGTCCGAGTTTGTGAGATTTAACTA
66 TTGAGTCCGAGTTTGTGAGATTTAACTA
* *
83760430 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAACTCGTTGAG
83760495 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
83760508 CGCTTATGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTTGTGAGATTTAACTA
Found at i:83772640 original size:3 final size:3
Alignment explanation
Indices: 83772632--83772691 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
83772622 TATGAGGTAA
*
83772632 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
83772680 ATT ATT ATT ATT
1 ATT ATT ATT ATT
83772692 GAGATGAGTG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:83776231 original size:46 final size:45
Alignment explanation
Indices: 83776136--83776253 Score: 161
Period size: 45 Copynumber: 2.6 Consensus size: 45
83776126 GGGCCAACAC
*
83776136 CATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTAGCCCATA
1 CATGTCCCAGACAT-GTCTTACACTGGCTACATCTCGTAGCCCATA
* *
83776181 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TACATCTCGTA-GCCCATA
83776227 CATGTCCCAG-CATGTCTTACACTGGCT
1 CATGTCCCAGACATGTCTTACACTGGCT
83776254 CACAAATAAC
Statistics
Matches: 67, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
44 13 0.19
45 31 0.46
46 23 0.34
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTACATCTCGTAGCCCATA
Found at i:83776372 original size:31 final size:32
Alignment explanation
Indices: 83776331--83776398 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 32
83776321 CTATCTCAAT
83776331 ATTCATCATACATAATCATTTCCAAAATATCA
1 ATTCATCATACATAATCATTTCCAAAATATCA
83776363 ATTCA-CATACATAATCATTTCCAAAATATCA
1 ATTCATCATACATAATCATTTCCAAAATATCA
83776394 ATTCA
1 ATTCA
83776399 AACACATATG
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.86
32 5 0.14
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (32 bp):
ATTCATCATACATAATCATTTCCAAAATATCA
Found at i:83776406 original size:31 final size:31
Alignment explanation
Indices: 83776340--83776406 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
83776330 TATTCATCAT
* *
83776340 ACATAATCATTTCCAAAATATCAATTCACAT
1 ACATAATCATTTCCAAAATATCAATTCAAAC
83776371 ACATAATCATTTCCAAAATATCAATTCAAAC
1 ACATAATCATTTCCAAAATATCAATTCAAAC
83776402 ACATA
1 ACATA
83776407 TGATAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (31 bp):
ACATAATCATTTCCAAAATATCAATTCAAAC
Found at i:83779622 original size:48 final size:48
Alignment explanation
Indices: 83779548--83779818 Score: 214
Period size: 48 Copynumber: 5.6 Consensus size: 48
83779538 TGATATGTGT
* *
83779548 CTAGTGTAAGACCATGTTTGGAACATGGCATCGGCCAT-ATTATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGA-TATGAGAG
* * * *
83779596 CTAGTGAAAGACCATGCCTGGGACATGCCATCGGCGC-TGATATGTGCA-
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CATGATATGAG-AG
* * * * **
83779644 CTAGTGTAAGACCAAGTCTGGGAAATGGCTTCGGTCACAATATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
** * * * *
83779692 CCGGTGTAAGACCATGT-TCAGAACATGGCATCGGCAATGAGACT-AGAG
1 CTAGTGTAAGACCATGTCT-GGGACATGGCATCGGCCATGATA-TGAGAG
* * *
83779740 CTAGTGTGAGACCATGTCTAGGACATGGCATCGGCC-TCGACATGTA-AG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GATATG-AGAG
* * *
83779788 CCAATGTAAGACCACGTCTGGGACATGGCAT
1 CTAGTGTAAGACCATGTCTGGGACATGGCAT
83779819 TGCCAATTTA
Statistics
Matches: 173, Mismatches: 39, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
47 5 0.03
48 162 0.94
49 6 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
Found at i:83779816 original size:144 final size:144
Alignment explanation
Indices: 83779551--83779816 Score: 335
Period size: 144 Copynumber: 1.8 Consensus size: 144
83779541 TATGTGTCTA
** * * *
83779551 GTGTAAGACCATGTTTGGAACATGGCATCGGCCATATTATGAGAGCTAGTGAAAGACCATGCCTG
1 GTGTAAGACCATGTTCAGAACATGGCATCGGCAATATGATGAGAGCTAGTGAAAGACCATGCCTA
* *
83779616 GGACATGCCATCGGCGCTGATATGTGCACTAGTGTAAGACCAAGTCTGGGAAATGGCTTCGGTCA
66 GGACATGCCATCGGCGCTGACATGTGCACTAATGTAAGACCAAGTCTGGGAAATGGCTTCGGTCA
83779681 CAATATGAGAGCCG
131 CAATATGAGAGCCG
** *
83779695 GTGTAAGACCATGTTCAGAACATGGCATCGGCAATGA-GACT-AGAGCTAGTGTGAGACCATGTC
1 GTGTAAGACCATGTTCAGAACATGGCATCGGCAAT-ATGA-TGAGAGCTAGTGAAAGACCATGCC
* * *
83779758 TAGGACATGGCATCGGC-CTCGACATGTAAGC-C-AATGTAAGACCACGTCTGGGACATGGC
64 TAGGACATGCCATCGGCGCT-GACATGT--GCACTAATGTAAGACCAAGTCTGGGAAATGGC
83779817 ATTGCCAATT
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
143 2 0.02
144 97 0.93
145 3 0.03
146 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (144 bp):
GTGTAAGACCATGTTCAGAACATGGCATCGGCAATATGATGAGAGCTAGTGAAAGACCATGCCTA
GGACATGCCATCGGCGCTGACATGTGCACTAATGTAAGACCAAGTCTGGGAAATGGCTTCGGTCA
CAATATGAGAGCCG
Found at i:83781050 original size:34 final size:34
Alignment explanation
Indices: 83781009--83781084 Score: 143
Period size: 34 Copynumber: 2.2 Consensus size: 34
83780999 CATGTGAGCA
*
83781009 ACACGGGCCTTTAACATGGCCATGTTAAGATGAC
1 ACACGGGCCTTTAACATGACCATGTTAAGATGAC
83781043 ACACGGGCCTTTAACATGACCATGTTAAGATGAC
1 ACACGGGCCTTTAACATGACCATGTTAAGATGAC
83781077 ACACGGGC
1 ACACGGGC
83781085 GTGTCACCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (34 bp):
ACACGGGCCTTTAACATGACCATGTTAAGATGAC
Found at i:83787000 original size:18 final size:19
Alignment explanation
Indices: 83786979--83787017 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
83786969 TCTCCCATTT
*
83786979 TTCTCCCCTC-TCTCTCCC
1 TTCTCCCCTCTTCTCACCC
83786997 TTCTCCCCTCTTCTCACCC
1 TTCTCCCCTCTTCTCACCC
83787016 TT
1 TT
83787018 GTGCACACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.03, C:0.56, G:0.00, T:0.41
Consensus pattern (19 bp):
TTCTCCCCTCTTCTCACCC
Found at i:83797333 original size:14 final size:14
Alignment explanation
Indices: 83797310--83797342 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
83797300 TTCCTGAATG
*
83797310 TTTCTTATTTCTCA
1 TTTCTAATTTCTCA
83797324 TTTCTAATTTCTCA
1 TTTCTAATTTCTCA
83797338 TTTCT
1 TTTCT
83797343 TATTCATTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTCTAATTTCTCA
Found at i:83802989 original size:30 final size:29
Alignment explanation
Indices: 83802941--83803066 Score: 155
Period size: 29 Copynumber: 4.3 Consensus size: 29
83802931 GAAAACATGT
*
83802941 ATATGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
83802970 GTATGAATGTGATTTTGGGCCTAATGTGCC
1 ATATGAATGTGA-TTTGGGCCTAATGGGCC
* *
83803000 ATACGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
83803029 ATTTGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
83803057 ATATGCATGT
1 ATATGAATGT
83803067 ATGTACACTT
Statistics
Matches: 81, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 22 0.27
29 35 0.43
30 24 0.30
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:83805527 original size:28 final size:28
Alignment explanation
Indices: 83805495--83805593 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
83805485 GCAATAAGCC
*
83805495 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
83805523 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
83805551 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
83805580 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83805594 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:83813203 original size:28 final size:28
Alignment explanation
Indices: 83813171--83813269 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
83813161 GCAATAAGCC
*
83813171 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
83813199 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
83813227 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
83813256 CGCACACTTAGTGC
1 CGCACACTTAGTGC
83813270 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:83815568 original size:13 final size:13
Alignment explanation
Indices: 83815552--83815576 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83815542 AGGTCATGTG
83815552 AGGGACACGGGCC
1 AGGGACACGGGCC
83815565 AGGGACACGGGC
1 AGGGACACGGGC
83815577 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:83817770 original size:15 final size:16
Alignment explanation
Indices: 83817746--83817778 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
83817736 ATTAAATGAA
83817746 TTTATCTTGAAT-TAT
1 TTTATCTTGAATATAT
*
83817761 TTTATTTTGAATATAT
1 TTTATCTTGAATATAT
83817777 TT
1 TT
83817779 AGATCAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.64
Consensus pattern (16 bp):
TTTATCTTGAATATAT
Found at i:83818154 original size:43 final size:42
Alignment explanation
Indices: 83818079--83818207 Score: 156
Period size: 43 Copynumber: 3.0 Consensus size: 42
83818069 ATAGGATTTA
83818079 CGATATGTGATTGCATGTAAGACCATGTCTGGGACA-TCGGCAT
1 CGATATGTGATT-CATGTAAGACCATGTCTGGGACAGT-GGCAT
* *
83818122 CGTATATGTGATTCGTGTAAGACCCT-TCCTGGGACAGTGGCAT
1 CG-ATATGTGATTCATGTAAGACCATGT-CTGGGACAGTGGCAT
*
83818165 CGATATGTGATTTCATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 CGATATGTGA-TTCATGTAAGACCATGTCTGGGACAG-TGGCAT
83818208 TGTACGATAT
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
42 10 0.13
43 53 0.71
44 12 0.16
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (42 bp):
CGATATGTGATTCATGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:83824616 original size:26 final size:26
Alignment explanation
Indices: 83824587--83824694 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
83824577 TGGTACAAAT
83824587 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
83824613 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83824639 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
83824665 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83824691 TGAT
1 TGAT
83824695 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:83829595 original size:28 final size:28
Alignment explanation
Indices: 83829496--83829582 Score: 138
Period size: 28 Copynumber: 3.1 Consensus size: 28
83829486 GCAATCAAAT
* *
83829496 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
83829524 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
83829552 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
83829580 ATG
1 ATG
83829583 ATACTTCGTG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:83829602 original size:28 final size:28
Alignment explanation
Indices: 83829496--83829602 Score: 133
Period size: 28 Copynumber: 3.8 Consensus size: 28
83829486 GCAATCAAAT
* * *
83829496 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
83829524 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
83829552 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
** * *
83829580 ATGATACTTCGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
83829603 CGAATGATTC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 70 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:83838934 original size:25 final size:24
Alignment explanation
Indices: 83838828--83838945 Score: 141
Period size: 24 Copynumber: 4.9 Consensus size: 24
83838818 GCTTTATCAT
*
83838828 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
83838853 ATAACTAGGG-AAAATCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
83838876 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
83838900 ATAATTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
83838925 ATAACTGGGGCATAAGCCCTT
1 ATAACTGGGGCATAAGCCCTT
83838946 CTACACTTCC
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
23 15 0.19
24 37 0.46
25 28 0.35
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:83838934 original size:49 final size:48
Alignment explanation
Indices: 83838819--83838945 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 48
83838809 AGCATAGCTG
* *
83838819 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGAAAATCC
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGAAAAGCC
* * * *
83838870 CTTT-TAATAACTGGGGCATAAGCCCTTTTAATAATTGGGGCATAAGCC
1 CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTAGGG-AAAAGCC
83838918 CTTTATCATAACTGGGGCATAAGCCCTT
1 CTTTATCATAACTGGGGCATAAGCCCTT
83838946 CTACACTTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
47 18 0.27
48 21 0.32
49 22 0.33
50 1 0.02
51 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (48 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTAGGGAAAAGCC
Found at i:83839022 original size:20 final size:20
Alignment explanation
Indices: 83838997--83839062 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
83838987 TTATGAATAC
83838997 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
83839017 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83839037 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
83839057 A-CATGT
1 ATCATGT
83839063 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 5 0.11
20 39 0.89
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83839028 original size:11 final size:11
Alignment explanation
Indices: 83838997--83839052 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83838987 TTATGAATAC
83838997 ATCATGTGCAT
1 ATCATGTGCAT
*
83839008 ATCA--TACAT
1 ATCATGTGCAT
83839017 ATCATGTGCAT
1 ATCATGTGCAT
*
83839028 ATCA--TACAT
1 ATCATGTGCAT
*
83839037 GTCATGTGCAT
1 ATCATGTGCAT
83839048 ATCAT
1 ATCAT
83839053 ACATACATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:83846606 original size:31 final size:31
Alignment explanation
Indices: 83846568--83846631 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
83846558 CCTTTTCACA
83846568 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
83846599 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
83846630 TT
1 TT
83846632 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:83846906 original size:25 final size:25
Alignment explanation
Indices: 83846850--83846943 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
83846840 TCCTCTTTTA
* *
83846850 ATAACTGGGG-AAAAGCCCTTT-TA
1 ATAACTGGGGCATAAGCCCTTTATC
83846873 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTTATC
83846898 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTTATC
83846923 ATAACTGGGGCATAAGCCCTT
1 ATAACTGGGGCATAAGCCCTT
83846944 CTACACTTCC
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
23 10 0.15
24 10 0.15
25 47 0.70
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (25 bp):
ATAACTGGGGCATAAGCCCTTTATC
Found at i:83847020 original size:20 final size:20
Alignment explanation
Indices: 83846995--83847055 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
83846985 TTATGAATAC
83846995 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
83847015 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
83847035 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
83847055 A
1 A
83847056 CCAAGTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83847026 original size:11 final size:11
Alignment explanation
Indices: 83846995--83847050 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
83846985 TTATGAATAC
83846995 ATCATGTGCAT
1 ATCATGTGCAT
*
83847006 ATCA--TACAT
1 ATCATGTGCAT
83847015 ATCATGTGCAT
1 ATCATGTGCAT
*
83847026 ATCA--TACAT
1 ATCATGTGCAT
*
83847035 GTCATGTGCAT
1 ATCATGTGCAT
83847046 ATCAT
1 ATCAT
83847051 ACATACCAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:83866243 original size:16 final size:17
Alignment explanation
Indices: 83866218--83866259 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
83866208 TTTTAATTTT
83866218 AACAATTTTTTTGAATA
1 AACAATTTTTTTGAATA
83866235 AACAATTTTTTTGAATA
1 AACAATTTTTTTGAATA
*
83866252 ATCAATTT
1 AACAATTT
83866260 GTATTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (17 bp):
AACAATTTTTTTGAATA
Found at i:83873325 original size:3 final size:3
Alignment explanation
Indices: 83873317--83873343 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
83873307 TTTTGTAGGT
83873317 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
83873344 ACTTTGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:83875946 original size:2 final size:2
Alignment explanation
Indices: 83875939--83875976 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
83875929 CTCATCTGTT
83875939 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
83875977 ATTTGGAGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:83876133 original size:27 final size:27
Alignment explanation
Indices: 83876095--83876150 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
83876085 GGCGCATATG
83876095 TTAATTTCTTCTTATTATTATTTGGCA
1 TTAATTTCTTCTTATTATTATTTGGCA
*
83876122 TTAATTTCTTCTTCTTATTATTTGGCA
1 TTAATTTCTTCTTATTATTATTTGGCA
83876149 TT
1 TT
83876151 TTTGGGGGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.20, C:0.12, G:0.07, T:0.61
Consensus pattern (27 bp):
TTAATTTCTTCTTATTATTATTTGGCA
Found at i:83887123 original size:49 final size:49
Alignment explanation
Indices: 83887067--83887280 Score: 369
Period size: 49 Copynumber: 4.4 Consensus size: 49
83887057 TATCAAAATT
83887067 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
83887116 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
83887165 TGTGAAAAG-GTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
83887214 TGTGAAAATGTATATATATGTGAT-AGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
83887262 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
83887281 ATGTGGTAAA
Statistics
Matches: 156, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
48 43 0.28
49 109 0.70
50 4 0.03
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:83901344 original size:24 final size:24
Alignment explanation
Indices: 83901317--83901365 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
83901307 TTAAGAAAAG
83901317 TTAGTAGATATTTTTGATGAATCA
1 TTAGTAGATATTTTTGATGAATCA
83901341 TTAGTAGATATTTTTGATGAATCA
1 TTAGTAGATATTTTTGATGAATCA
83901365 T
1 T
83901366 CCATGGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (24 bp):
TTAGTAGATATTTTTGATGAATCA
Found at i:83905437 original size:14 final size:14
Alignment explanation
Indices: 83905399--83905441 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
83905389 CAAAATTTAC
83905399 AATATAATTAAA-T
1 AATATAATTAAATT
83905412 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
83905427 AA-ATAATTTAATT
1 AATATAATTAAATT
83905440 AA
1 AA
83905442 CTATTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:83911137 original size:26 final size:26
Alignment explanation
Indices: 83911090--83911143 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 26
83911080 AAAGAAACGA
83911090 ATCAAGACAAAAAAAAATTAGGTACTT
1 ATCAAGAC-AAAAAAAATTAGGTACTT
83911117 ATCAAGAC-AAAAAAATCTAGGTACTT
1 ATCAAGACAAAAAAAAT-TAGGTACTT
83911143 A
1 A
83911144 CTTGAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 8 0.31
26 10 0.38
27 8 0.31
ACGTcount: A:0.54, C:0.13, G:0.11, T:0.22
Consensus pattern (26 bp):
ATCAAGACAAAAAAAATTAGGTACTT
Found at i:83912135 original size:16 final size:17
Alignment explanation
Indices: 83912116--83912151 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
83912106 AAAATGAAAT
83912116 TAAAGATA-TAAATAAA
1 TAAAGATAGTAAATAAA
83912132 TAAAGATAGTAAATAAA
1 TAAAGATAGTAAATAAA
83912149 TAA
1 TAA
83912152 GCAAAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (17 bp):
TAAAGATAGTAAATAAA
Found at i:83912747 original size:3 final size:3
Alignment explanation
Indices: 83912739--83912811 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
83912729 AAGAGAAAGT
83912739 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
83912787 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
83912812 ACTAATTAAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:83915930 original size:2 final size:2
Alignment explanation
Indices: 83915918--83915950 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
83915908 TCAATCTCAC
83915918 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83915951 CACATACCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:83916154 original size:38 final size:38
Alignment explanation
Indices: 83916072--83916280 Score: 222
Period size: 38 Copynumber: 5.4 Consensus size: 38
83916062 AAACCCAAAC
* * * * * *
83916072 ATAACACCAGCACGAAGCCTACAGGACTTTAAACTCAGAT
1 ATAATACCAGCACAAAGCCTGCGGGA-TTT-AACCCGGAT
* *
83916112 ATAATACCAGCACCAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
* *
83916150 ATAATACCAGCACGAAGCCTACGGGATTTAACCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
*
83916188 ATATTACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
* * * *
83916226 ATAATTCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGAT
*
83916266 ACAAT-CTCAGCACAA
1 ATAATAC-CAGCACAA
83916281 TTTATTTTAT
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
38 98 0.68
39 9 0.06
40 38 0.26
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
ATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGAT
Found at i:83916210 original size:76 final size:78
Alignment explanation
Indices: 83916072--83916237 Score: 246
Period size: 76 Copynumber: 2.2 Consensus size: 78
83916062 AAACCCAAAC
* * * *
83916072 ATAACACCAGCACGAAGCCTACAGGACTTTAAACTCAGATATAATACCAGCACCAGGCCTGCGGG
1 ATAATACCAGCACGAAGCCTACAGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGG
83916137 ATTTAACCCGGAT
66 ATTTAACCCGGAT
* * *
83916150 ATAATACCAGCACGAAGCCTACGGGA-TTT-AACCCGGATATATTACCAGCACAAAGCCTGCGGG
1 ATAATACCAGCACGAAGCCTACAGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGG
83916213 ATTTAACCCGGAT
66 ATTTAACCCGGAT
*
83916226 ATAATTCCAGCA
1 ATAATACCAGCA
83916238 TATAGCCTGC
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
76 53 0.66
77 3 0.04
78 24 0.30
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.19
Consensus pattern (78 bp):
ATAATACCAGCACGAAGCCTACAGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGG
ATTTAACCCGGAT
Found at i:83923469 original size:43 final size:43
Alignment explanation
Indices: 83923415--83923537 Score: 185
Period size: 43 Copynumber: 2.9 Consensus size: 43
83923405 TATCGGCATT
* *
83923415 AAGCTTGCTAGGCACGAAGACCCGAATACACATCACCGGCATG
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
* * *
83923458 AATCCTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
83923501 AAGCCTGCTAGGCACGAA-AGCCCGAATACACATCACC
1 AAGCCTGCTAGGCACGAAGA-CCCGAATACACATCACC
83923538 AAGTTTTCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.13
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGACCCGAATACACATCACCGGCACG
Done.