Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 297 of 427
Found at i:86018643 original size:22 final size:22
Alignment explanation
Indices: 86018558--86018684 Score: 96
Period size: 23 Copynumber: 5.5 Consensus size: 22
86018548 CAACTCGTAT
* *
86018558 GAGCTTACCGATTCAGC-CCATAA
1 GAGCTTACTG-TTCAGCTCAAT-A
* * *
86018581 GAGCTTACCGTTTCAGCTCATTG
1 GAGCTTACTG-TTCAGCTCAATA
* *
86018604 GAGATTA-TCGATTCAGCTCGATA
1 GAGCTTACT-G-TTCAGCTCAATA
86018627 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
* *
86018649 GAGCTTATCGTTTTCAGCTTAATA
1 GAGCTTA-C-TGTTCAGCTCAATA
86018673 GAGCTTACTGTT
1 GAGCTTACTGTT
86018685 TATCAGCTCA
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
22 21 0.25
23 41 0.49
24 22 0.26
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:86018672 original size:24 final size:23
Alignment explanation
Indices: 86018580--86018694 Score: 101
Period size: 23 Copynumber: 4.9 Consensus size: 23
86018570 TCAGCCCATA
*
86018580 AGAGCTTACCG-TTTCAGCTCATT
1 AGAGCTTA-CGTTTTCAGCTCAAT
* * * *
86018603 GGAGATTATCG-ATTCAGCTCGAT
1 AGAGCTTA-CGTTTTCAGCTCAAT
*
86018626 AGAGCTTAC-TGTTCAGCTCAAT
1 AGAGCTTACGTTTTCAGCTCAAT
*
86018648 AGAGCTTATCGTTTTCAGCTTAAT
1 AGAGCTTA-CGTTTTCAGCTCAAT
86018672 AGAGCTTACTGTTTATCAGCTCA
1 AGAGCTTAC-GTTT-TCAGCTCA
86018695 GGAGGAGCTT
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
22 19 0.26
23 25 0.34
24 23 0.31
25 7 0.09
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (23 bp):
AGAGCTTACGTTTTCAGCTCAAT
Found at i:86018891 original size:20 final size:20
Alignment explanation
Indices: 86018868--86018929 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
86018858 GTTATTATTG
86018868 ATGAATTACTGGTTATACGA
1 ATGAATTACTGGTTATACGA
* * *
86018888 ATGAACTACTAGTTATATGA
1 ATGAATTACTGGTTATACGA
*
86018908 ATGAATTA-TAGTTTATACGA
1 ATGAATTACT-GGTTATACGA
86018928 AT
1 AT
86018930 AGAAATGAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (20 bp):
ATGAATTACTGGTTATACGA
Found at i:86021824 original size:2 final size:2
Alignment explanation
Indices: 86021817--86021849 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
86021807 TCTGTTGGAA
86021817 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
86021850 CTTTAAAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:86022190 original size:24 final size:24
Alignment explanation
Indices: 86022152--86022199 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
86022142 TATTAAACAT
*
86022152 ATAATATAATATTTATATAATAAA
1 ATAATATAATATTTAAATAATAAA
86022176 ATAA-ATAATATTTTAAATAATAAA
1 ATAATATAATA-TTTAAATAATAAA
86022200 TCTTTCACCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
ATAATATAATATTTAAATAATAAA
Found at i:86024861 original size:44 final size:44
Alignment explanation
Indices: 86024795--86024895 Score: 184
Period size: 44 Copynumber: 2.3 Consensus size: 44
86024785 TGTTGCAGAA
* *
86024795 AAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAAATATAGG
1 AAGGATTTAGCCCAGACAGGTAATCCGTTGATCTCAAATATAGG
86024839 AAGGATTTAGCCCAGACAGGTAATCCGTTGATCTCAAATATAGG
1 AAGGATTTAGCCCAGACAGGTAATCCGTTGATCTCAAATATAGG
86024883 AAGGATTTAGCCC
1 AAGGATTTAGCCC
86024896 GGACGAGTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (44 bp):
AAGGATTTAGCCCAGACAGGTAATCCGTTGATCTCAAATATAGG
Found at i:86031363 original size:2 final size:2
Alignment explanation
Indices: 86031356--86031388 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
86031346 CATGTCTACT
86031356 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86031389 AAATTTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86036447 original size:40 final size:37
Alignment explanation
Indices: 86036349--86036511 Score: 167
Period size: 35 Copynumber: 4.5 Consensus size: 37
86036339 GGCAAAGTGC
86036349 GAAATGTAGGTATGG--TATCATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATATCATCCATACTGAGTTGT
*
86036384 GAAATGTAGGTATGGTAT-T-ATCCATACTGAGCTGT
1 GAAATGTAGGTATGGTATATCATCCATACTGAGTTGT
**
86036419 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTA-TATC--ATCCATACTGAGTTGT
* * * * * *
86036459 GAAATGTGGGTATGGCATTTC--CCTTACCGAGTTGA
1 GAAATGTAGGTATGGTATATCATCCATACTGAGTTGT
*
86036494 AAAATGTAGGTATGGTAT
1 GAAATGTAGGTATGGTAT
86036512 TTCAATGAGG
Statistics
Matches: 108, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
35 73 0.68
36 2 0.02
37 2 0.02
39 3 0.03
40 28 0.26
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (37 bp):
GAAATGTAGGTATGGTATATCATCCATACTGAGTTGT
Found at i:86036463 original size:75 final size:75
Alignment explanation
Indices: 86036349--86036516 Score: 197
Period size: 75 Copynumber: 2.3 Consensus size: 75
86036339 GGCAAAGTGC
** *
86036349 GAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-CCA
1 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TCCCA
* *
86036408 TACTGAGCTGT
65 TACCGAGCTGA
* *
86036419 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTGGGTATGGCATTTCCCTT
1 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCAT
*
86036484 ACCGAGTTGA
66 ACCGAGCTGA
*
86036494 AAAATGTAGGTATGGTATT-TCAA
1 GAAATGTAGGTATGGTATTATCAA
86036517 TGAGGAAAAC
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 15 0.18
73 4 0.05
74 5 0.06
75 59 0.71
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCCCAT
ACCGAGCTGA
Found at i:86041765 original size:47 final size:47
Alignment explanation
Indices: 86041701--86041811 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
86041691 GACATTGAGT
*
86041701 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
86041748 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
86041795 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
86041812 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:86050440 original size:51 final size:50
Alignment explanation
Indices: 86050369--86050528 Score: 230
Period size: 51 Copynumber: 3.2 Consensus size: 50
86050359 CTGATCACAT
*
86050369 TTATCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
86050420 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * * *
86050470 TTGTCACTTATCAATGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
86050521 TTGTCACT
1 TTATCACT
86050529 GATCAGAAGT
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 45 0.45
51 54 0.55
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:86053878 original size:17 final size:17
Alignment explanation
Indices: 86053856--86053889 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86053846 AAATGGAAAC
86053856 TAATCTTAGAAGATTTG
1 TAATCTTAGAAGATTTG
*
86053873 TAATCTTATAAGATTTG
1 TAATCTTAGAAGATTTG
86053890 ATTTTGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (17 bp):
TAATCTTAGAAGATTTG
Found at i:86055457 original size:25 final size:25
Alignment explanation
Indices: 86055423--86055472 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
86055413 ACACCCAATC
86055423 GATGCTTATACATCTAAAAGTCGCT
1 GATGCTTATACATCTAAAAGTCGCT
86055448 GATGCTTATACATCTAAAAGTCGCT
1 GATGCTTATACATCTAAAAGTCGCT
86055473 CATTCTCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (25 bp):
GATGCTTATACATCTAAAAGTCGCT
Found at i:86059434 original size:21 final size:20
Alignment explanation
Indices: 86059405--86059444 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86059395 ATATTAATAA
*
86059405 ATTATTTAAACATAATTAAAT
1 ATTAATTAAA-ATAATTAAAT
*
86059426 ATTAATTAAAATTATTAAA
1 ATTAATTAAAATAATTAAA
86059445 AAATTCTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTAATTAAAATAATTAAAT
Found at i:86061959 original size:33 final size:33
Alignment explanation
Indices: 86061917--86061985 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
86061907 ATAAAATCTT
86061917 GATAAATTTAAAATTTTAGATTCGAGTTTTATA
1 GATAAATTTAAAATTTTAGATTCGAGTTTTATA
86061950 GATAAATTTAAAATTTTAGATTCGAGTTTTATA
1 GATAAATTTAAAATTTTAGATTCGAGTTTTATA
86061983 GAT
1 GAT
86061986 GTGTGAGATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (33 bp):
GATAAATTTAAAATTTTAGATTCGAGTTTTATA
Found at i:86064191 original size:112 final size:114
Alignment explanation
Indices: 86064032--86064257 Score: 368
Period size: 112 Copynumber: 2.0 Consensus size: 114
86064022 CATCAGTTAA
*
86064032 ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATGGTAGTTAAAGTACTAATTAAC-
1 ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAACG
86064096 G-GCAATTTACGAGTGATAAATATAGTCAAAAACATAGATCAAGCTTTAG
66 GTGCAATTTACGAGTGAT-AATATAGTCAAAAACATAGATCAAGCTTTAG
86064145 ATGGTATGCTATGTAT-CGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAACG
1 ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAAC-
*
86064209 GAAGGTGCAATTTACGAGTGATAATATAGTCAAGAACATAGATCAAGCT
65 ---GGTGCAATTTACGAGTGATAATATAGTCAAAAACATAGATCAAGCT
86064258 CCCTCGCTCA
Statistics
Matches: 105, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
112 46 0.44
113 16 0.15
117 27 0.26
118 16 0.15
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (114 bp):
ATGGTATGCTATGTATCCGTAGAATCTTAGCTGTAGCTTGATAGTAGTTAAAGTACTAATTAACG
GTGCAATTTACGAGTGATAATATAGTCAAAAACATAGATCAAGCTTTAG
Found at i:86066326 original size:15 final size:15
Alignment explanation
Indices: 86066284--86066328 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
86066274 AAGAAAATTG
* *
86066284 GAAAGATGGAAAATT
1 GAAAGATAGAAAATA
*
86066299 GAAAGGGTAGAAAATA
1 GAAA-GATAGAAAATA
86066315 GAAAGATAGAAAAT
1 GAAAGATAGAAAAT
86066329 GTAATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.16
Consensus pattern (15 bp):
GAAAGATAGAAAATA
Found at i:86077433 original size:58 final size:59
Alignment explanation
Indices: 86077360--86077481 Score: 192
Period size: 58 Copynumber: 2.1 Consensus size: 59
86077350 AAATTGTCCA
* *
86077360 ACACATTAATAAATTACACTAGACTTTAAAATTGTTGCGGTTTA-GTTTCCTTTAGTAG
1 ACACATTAATAAATTACACTAAACTTTAAAAATGTTGCGGTTTAGGTTTCCTTTAGTAG
* *
86077418 ACACATTAATCAATTACACTAAACTTTAAAAATGTTGTGGTTTAGGTTTCCTTTAGTAG
1 ACACATTAATAAATTACACTAAACTTTAAAAATGTTGCGGTTTAGGTTTCCTTTAGTAG
*
86077477 CCACA
1 ACACA
86077482 AGACTAATGG
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
58 40 0.69
59 18 0.31
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.38
Consensus pattern (59 bp):
ACACATTAATAAATTACACTAAACTTTAAAAATGTTGCGGTTTAGGTTTCCTTTAGTAG
Found at i:86084452 original size:75 final size:73
Alignment explanation
Indices: 86084364--86084535 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
86084354 GGTTTTCCTC
*** * * **
86084364 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
86084428 TCAGTATGG
65 TCAGTATGG
*
86084437 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
86084502 CTCAGTATGG
64 CTCAGTATGG
86084512 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
86084536 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:86084533 original size:35 final size:35
Alignment explanation
Indices: 86084369--86084535 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
86084359 TCCTCATTGA
*** *
86084369 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
86084404 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
86084444 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
86084479 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
86084514 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
86084536 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:86091920 original size:75 final size:73
Alignment explanation
Indices: 86091832--86092003 Score: 217
Period size: 75 Copynumber: 2.4 Consensus size: 73
86091822 GGTTTTCCTC
*** * * **
86091832 ATTGAAATACCATACCTACATTTTTTAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
86091896 TCAGTATGG
65 TCAGTATGG
*
86091905 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
86091970 CTCAGTATGG
64 CTCAGTATGG
86091980 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
86092004 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 57 0.65
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:86092001 original size:35 final size:35
Alignment explanation
Indices: 86091837--86092003 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
86091827 TCCTCATTGA
*** *
86091837 AATACCATACCTACATTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
86091872 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
86091912 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
86091947 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
86091982 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
86092004 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
35 88 0.75
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:86094207 original size:26 final size:26
Alignment explanation
Indices: 86094167--86094228 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
86094157 ACATATTTTC
* **
86094167 TCAAAATTTTTCCAAGGGCAAAATCG
1 TCAAAATTTTACCAAGCACAAAATCG
* *
86094193 TTAAAATTTTACCAAGCATAAAATCG
1 TCAAAATTTTACCAAGCACAAAATCG
86094219 TCAAAATTTT
1 TCAAAATTTT
86094229 GTTGGAGGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTACCAAGCACAAAATCG
Found at i:86103520 original size:4 final size:4
Alignment explanation
Indices: 86103511--86103557 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
86103501 GGGTCGAATG
86103511 GATT GATT GATT GATT GATT GATT GATT GATT GATT GATT GATT GAT
1 GATT GATT GATT GATT GATT GATT GATT GATT GATT GATT GATT GAT
86103558 AAGCCACAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
GATT
Found at i:86105649 original size:22 final size:21
Alignment explanation
Indices: 86105614--86105658 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
86105604 CACAAATTTA
*
86105614 ATTTTTTTTTTAAAAAATATT
1 ATTTTTTTTATAAAAAATATT
**
86105635 ATTTTTTTATATAAATTATATT
1 ATTTTTTT-TATAAAAAATATT
86105657 AT
1 AT
86105659 AAATATGAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTTTTTTATAAAAAATATT
Found at i:86105913 original size:17 final size:17
Alignment explanation
Indices: 86105864--86105926 Score: 53
Period size: 19 Copynumber: 3.8 Consensus size: 17
86105854 ATATATCCAA
*
86105864 AAAAATATTAAAAATCAAT
1 AAAAATATTATAAA--AAT
*
86105883 AAAAATATTTTAAAAAT
1 AAAAATATTATAAAAAT
86105900 AAAACA-ATTAT--AAAT
1 AAAA-ATATTATAAAAAT
86105915 AAAAATA-TATAA
1 AAAAATATTATAA
86105927 TTTAAAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
14 4 0.11
15 9 0.24
17 11 0.30
18 1 0.03
19 12 0.32
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATATTATAAAAAT
Found at i:86116530 original size:130 final size:130
Alignment explanation
Indices: 86116323--86116624 Score: 374
Period size: 130 Copynumber: 2.3 Consensus size: 130
86116313 GCAAAAATTG
* * *
86116323 TTCATGATCGTAAAGCAATGAACTTAGGCTGTGATCATAAATCAACAAGCCTTAACAATATTAGT
1 TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAACAAGCCTTAACAATATCAGT
** * * * * * *
86116388 TATGATCATAAATCAGTGATCTGTTTGGAGTTGC-ACTCGTAAATTAGTTAACTCAAGGAAGATT
66 TATGATCATAAATCAACGAGCTGTTAGGAGCTGCGA-TCATAAATCAGCTAACTCAAGGAAGATT
86116452 T
130 T
* * * *
86116453 TTCATGATCGTAAATCAATAAACTTTGGCTGTGATCGTAAATCAACGAGCCTTAATAATATCAGT
1 TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAACAAGCCTTAACAATATCAGT
* * *
86116518 TGTGAT-AGTAAATTAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAGGGAAGATT
66 TATGATCA-TAAATCAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAAGGAAGATT
86116582 T
130 T
* * **
86116583 TTCATGATTGTAAATCAATGAGCTCGGGCTGTGATCGTAAAT
1 TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAAT
86116625 TAGCTAACTT
Statistics
Matches: 147, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
129 1 0.01
130 145 0.99
131 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (130 bp):
TTCATGATCGTAAATCAATGAACTTAGGCTGTGATCGTAAATCAACAAGCCTTAACAATATCAGT
TATGATCATAAATCAACGAGCTGTTAGGAGCTGCGATCATAAATCAGCTAACTCAAGGAAGATTT
Found at i:86116683 original size:62 final size:63
Alignment explanation
Indices: 86116547--86116689 Score: 162
Period size: 62 Copynumber: 2.3 Consensus size: 63
86116537 GCTGTTAGGA
* * * * * * *
86116547 GCTGCGATCATAAATCAGCTAACTCAGGGAAGATTTTTCATGATTGTAAATCAATGAGCTCGG
1 GCTGTGATCGTAAATCAGCTAACTCAGGAAAGATTGTTCATAATTGTAAATCAATGAACTCAG
* * * *
86116610 GCTGTGATCGTAAATTAGCTAACTTA-GAAAGATTGTTCATAATTGTAAATCAGTGAACTTAG
1 GCTGTGATCGTAAATCAGCTAACTCAGGAAAGATTGTTCATAATTGTAAATCAATGAACTCAG
* *
86116672 GTTGTGGTCGTAAATCAG
1 GCTGTGATCGTAAATCAG
86116690 TGAGCCTTAA
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
62 44 0.67
63 22 0.33
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (63 bp):
GCTGTGATCGTAAATCAGCTAACTCAGGAAAGATTGTTCATAATTGTAAATCAATGAACTCAG
Found at i:86116697 original size:192 final size:192
Alignment explanation
Indices: 86116424--86116792 Score: 488
Period size: 192 Copynumber: 1.9 Consensus size: 192
86116414 GGAGTTGCAC
* * * * *
86116424 TCGTAAATTAGTTAACTCAAGGAAGATTTTTCATGATCGTAAATCAATAAACTTTGGCTGTGATC
1 TCGTAAATTAGCTAACTCAAGAAAGATTGTTCATAATCGTAAATCAATAAACTTAGGCTGTGATC
* * * *
86116489 GTAAATCAACGAGCCTTAATAATATCAGTTGTGATAGTAAATTAACGAGCTGTTAGGAGCTGCGA
66 GTAAATCAACGAGCCTTAATAATATCAGTTGTGATAATAAATCAACGAGCTATTAGAAGCTGCGA
* * **
86116554 TCATAAATCAGCTAACTCAGGGAAGATTTTTCATGATTGTAAATCAATGAGCTCGGGCTGTGA
131 TCATAAATCAGCTAACTCA-GAAAGATTATTCATGATCATAAATCAATGAGCTCGGGCTGTGA
* * * * * *
86116617 TCGTAAATTAGCTAACT-TAGAAAGATTGTTCATAATTGTAAATCAGTGAACTTAGGTTGTGGTC
1 TCGTAAATTAGCTAACTCAAGAAAGATTGTTCATAATCGTAAATCAATAAACTTAGGCTGTGATC
** * * * *
86116681 GTAAATCAGTGAGCCTTAATAATATCAGTTGTGATAATGAATCAACGAGCTATTTGAAGTTGCTA
66 GTAAATCAACGAGCCTTAATAATATCAGTTGTGATAATAAATCAACGAGCTATTAGAAGCTGCGA
*
86116746 TCGTAAATCAGCTAACTCAGAAAGATTATTCATGATCATAAATCAAT
131 TCATAAATCAGCTAACTCAGAAAGATTATTCATGATCATAAATCAAT
86116793 TAACTTAGGT
Statistics
Matches: 150, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
191 24 0.16
192 110 0.73
193 16 0.11
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (192 bp):
TCGTAAATTAGCTAACTCAAGAAAGATTGTTCATAATCGTAAATCAATAAACTTAGGCTGTGATC
GTAAATCAACGAGCCTTAATAATATCAGTTGTGATAATAAATCAACGAGCTATTAGAAGCTGCGA
TCATAAATCAGCTAACTCAGAAAGATTATTCATGATCATAAATCAATGAGCTCGGGCTGTGA
Found at i:86116769 original size:129 final size:129
Alignment explanation
Indices: 86116620--86117049 Score: 513
Period size: 129 Copynumber: 3.3 Consensus size: 129
86116610 GCTGTGATCG
* * * * * *
86116620 TAAATTAGCTAACTTAGAAAGATTGTTCATAATTGTAAATCAGTGAACTTAGGTTGTGGTCGTAA
1 TAAATCAGCTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAA
* * * * *
86116685 ATCAGTGAGCCTTAATAATATCAGTTGTGATAATGAATCAACGAGCTATTTGAAGTTGCTATCG
66 ATCAGTGAGCCTTAATAATATCAGTTGTGATCATAAATCAACGAGCTATTTGGAGTTGCAATCA
* * * *
86116749 TAAATCAGCTAACTCAGAAAGATTATTCATGATCATAAATCAATTAACTTAGGTTGTGATCATAA
1 TAAATCAGCTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAA
* * * * * * *
86116814 ATCAGTGAGACTTAATAATTTTAGCTAG-GATCGTAAATCAACGAGCTGTTTGGAGTTGCGATCA
66 ATCAGTGAGCCTTAATAATATCAG-TTGTGATCATAAATCAACGAGCTATTTGGAGTTGCAATCA
* * * *
86116878 TAAATCAACTAACTCAGAAAGATTGTT-TTAATCGTAAATAAATGAACTTAGGTTGTGATCCTAA
1 TAAATCAGCTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAA
** *
86116942 ATCAGCAAGCCTTAATAATATCAGTTGTGATCATAAATCAACGAGCTATTTGGAGTTACAATCA
66 ATCAGTGAGCCTTAATAATATCAGTTGTGATCATAAATCAACGAGCTATTTGGAGTTGCAATCA
* * * * *
86117006 TAAATCATCTAACTTAGAAAAAGGTTATTCATGATCGTAAATCA
1 TAAATCAGCTAACTCAG--AAAGATTGTTCATAATCGTAAATCA
86117050 GCAATCCTTA
Statistics
Matches: 250, Mismatches: 46, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
127 2 0.01
128 97 0.39
129 130 0.52
130 10 0.04
131 11 0.04
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.32
Consensus pattern (129 bp):
TAAATCAGCTAACTCAGAAAGATTGTTCATAATCGTAAATCAATGAACTTAGGTTGTGATCATAA
ATCAGTGAGCCTTAATAATATCAGTTGTGATCATAAATCAACGAGCTATTTGGAGTTGCAATCA
Found at i:86125362 original size:24 final size:24
Alignment explanation
Indices: 86125335--86125385 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
86125325 TTTTCTTCCT
86125335 CTGTTAATGCTAATGAAATCCTTA
1 CTGTTAATGCTAATGAAATCCTTA
86125359 CTGTTAATGCTAATGAAATCCTTA
1 CTGTTAATGCTAATGAAATCCTTA
86125383 CTG
1 CTG
86125386 ACCTCTCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (24 bp):
CTGTTAATGCTAATGAAATCCTTA
Found at i:86128166 original size:13 final size:13
Alignment explanation
Indices: 86128148--86128173 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86128138 TTTGGACAAT
86128148 TTATAAAAAAAAA
1 TTATAAAAAAAAA
86128161 TTATAAAAAAAAA
1 TTATAAAAAAAAA
86128174 GGTTGGATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TTATAAAAAAAAA
Found at i:86131815 original size:30 final size:31
Alignment explanation
Indices: 86131781--86131846 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
86131771 GAATTAAAAA
86131781 AAAAAAACTT-AACAATCCAGTGACTTAAAT
1 AAAAAAACTTGAACAATCCAGTGACTTAAAT
* * * * *
86131811 AAAAATATTTGAATAGTTCAGTGACTTAAAT
1 AAAAAAACTTGAACAATCCAGTGACTTAAAT
86131842 AAAAA
1 AAAAA
86131847 CTTACGAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 8 0.27
31 22 0.73
ACGTcount: A:0.53, C:0.11, G:0.09, T:0.27
Consensus pattern (31 bp):
AAAAAAACTTGAACAATCCAGTGACTTAAAT
Found at i:86131856 original size:31 final size:31
Alignment explanation
Indices: 86131798--86131867 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
86131788 CTTAACAATC
**
86131798 CAGTGACTTAAATAAAAATATTTGAATAGTT
1 CAGTGACTTAAATAAAAATATACGAATAGTT
86131829 CAGTGACTTAAATAAAAACT-TACGAATAGTT
1 CAGTGACTTAAATAAAAA-TATACGAATAGTT
*
86131860 TAGTGACT
1 CAGTGACT
86131868 GAATTGTAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
31 34 0.97
32 1 0.03
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (31 bp):
CAGTGACTTAAATAAAAATATACGAATAGTT
Found at i:86142938 original size:22 final size:22
Alignment explanation
Indices: 86142895--86142950 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 22
86142885 TAGTCATATA
* * *
86142895 ATAAATTATTAATATAAAAAAT
1 ATAATTTATTATTTTAAAAAAT
*
86142917 ATAATTTATTATTTTAATAAAT
1 ATAATTTATTATTTTAAAAAAT
*
86142939 -T-ATTTAATATTT
1 ATAATTTATTATTT
86142951 CAATTTTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 10 0.34
21 1 0.03
22 18 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAATTTATTATTTTAAAAAAT
Found at i:86142998 original size:16 final size:17
Alignment explanation
Indices: 86142962--86142998 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
86142952 AATTTTATTT
*
86142962 TAATAATAAATTTTAAA
1 TAATAATAAAGTTTAAA
86142979 -AATAAT-AAGTTTAAA
1 TAATAATAAAGTTTAAA
86142994 TAATA
1 TAATA
86142999 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAATAAAGTTTAAA
Found at i:86143051 original size:15 final size:15
Alignment explanation
Indices: 86143031--86143087 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
86143021 ATTCAATATT
86143031 AATATTTTAATAATA
1 AATATTTTAATAATA
*
86143046 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
86143065 AATATATTAATAATA
1 AATATTTTAATAATA
*
86143080 AATGTTTT
1 AATATTTT
86143088 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:86143951 original size:63 final size:63
Alignment explanation
Indices: 86143814--86143978 Score: 287
Period size: 63 Copynumber: 2.6 Consensus size: 63
86143804 TTATTAAATT
*
86143814 TTAATAGAATTATTATTAAAATATGAATTAATAAAAAT-AAAATATATAATTTAATAACATTA
1 TTAATATAATTATTATTAAAATATGAATTAATAAAAATAAAAATATATAATTTAATAACATTA
* * *
86143876 TTAATATGATTATCATTAAAATATGAATTAATAAAAATAAAAATATATAATTTAATAACATTC
1 TTAATATAATTATTATTAAAATATGAATTAATAAAAATAAAAATATATAATTTAATAACATTA
86143939 TTAATATAATTATTATTAAAATATGAATTAATAAAAATAA
1 TTAATATAATTATTATTAAAATATGAATTAATAAAAATAA
86143979 TAATTAATAA
Statistics
Matches: 96, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
62 35 0.36
63 61 0.64
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (63 bp):
TTAATATAATTATTATTAAAATATGAATTAATAAAAATAAAAATATATAATTTAATAACATTA
Found at i:86151173 original size:12 final size:12
Alignment explanation
Indices: 86151156--86151183 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
86151146 GGTGGATATC
86151156 TTAAATTTTCTT
1 TTAAATTTTCTT
86151168 TTAAATTTTCTT
1 TTAAATTTTCTT
86151180 TTAA
1 TTAA
86151184 GAAAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (12 bp):
TTAAATTTTCTT
Found at i:86158700 original size:116 final size:116
Alignment explanation
Indices: 86158496--86158718 Score: 329
Period size: 116 Copynumber: 1.9 Consensus size: 116
86158486 TGTGGTTGAC
* * * *
86158496 AAAACAGCCACTCTGATTTCAATTCAGTGACTTAACTTTCTAAAAATAACAAATCAACCCTTTTA
1 AAAACAGCCACTCTGATTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAATCAACCATTTTA
* *
86158561 ATCATTTTCCATTACAAATGTAATAGAAAAATGACATGACATGTAACTGAT
66 ACCATTTTCCATTACAAACGTAATAGAAAAATGACATGACATGTAACTGAT
* * **
86158612 AAAACAGTCACTTTGATTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAATCAGTCATTTTA
1 AAAACAGCCACTCTGATTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAATCAACCATTTTA
* * *
86158677 ACCATTTTCCGTTACAAACGTAATGGAAAAGTGACATGACAT
66 ACCATTTTCCATTACAAACGTAATAGAAAAATGACATGACAT
86158719 CCTATTGTGT
Statistics
Matches: 94, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
116 94 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.30
Consensus pattern (116 bp):
AAAACAGCCACTCTGATTTCAATTCAGTCACTCAACTTTCGAAAAATAACAAATCAACCATTTTA
ACCATTTTCCATTACAAACGTAATAGAAAAATGACATGACATGTAACTGAT
Found at i:86159702 original size:29 final size:30
Alignment explanation
Indices: 86159642--86159708 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 30
86159632 GGAAAAGAAG
*
86159642 AAGTATAAACATATTGGGCCATTTATGCAAA
1 AAGTA-AAACATATTGGGCCATTTATGAAAA
* *
86159673 AAGTAAAA-ATATTGGGTCATTTATTAAAA
1 AAGTAAAACATATTGGGCCATTTATGAAAA
86159702 AAG-AAAA
1 AAGTAAAA
86159709 GGAAGGACTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 4 0.12
29 21 0.64
30 3 0.09
31 5 0.15
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.28
Consensus pattern (30 bp):
AAGTAAAACATATTGGGCCATTTATGAAAA
Found at i:86162157 original size:26 final size:26
Alignment explanation
Indices: 86162128--86162216 Score: 87
Period size: 25 Copynumber: 3.5 Consensus size: 26
86162118 ATGAGTATCT
86162128 CGATAAATGGCTCTTCGTGAGCTTTC
1 CGATAAATGGCTCTTCGTGAGCTTTC
* *
86162154 CGATTAAA-GGCTCTTTGTAAGC-TTC
1 CGA-TAAATGGCTCTTCGTGAGCTTTC
* * *
86162179 CTG-TTAATGGCTCTCCG-GAGCTTCC
1 C-GATAAATGGCTCTTCGTGAGCTTTC
86162204 CGATAAATGGCTC
1 CGATAAATGGCTC
86162217 ACAAGAGCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
24 7 0.14
25 23 0.46
26 16 0.32
27 4 0.08
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (26 bp):
CGATAAATGGCTCTTCGTGAGCTTTC
Found at i:86162224 original size:25 final size:25
Alignment explanation
Indices: 86162196--86162278 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
86162186 TGGCTCTCCG
*
86162196 GAGCTTCCCGATAAATGGCTCACAA
1 GAGCTTCCCGATATATGGCTCACAA
** *
86162221 GAGCTTCCC-ATTATACAGCTCACAT
1 GAGCTTCCCGA-TATATGGCTCACAA
*
86162246 GAGCTTCCCGTTATATGGCTCGA-AA
1 GAGCTTCCCGATATATGGCTC-ACAA
86162271 GAGCTTCC
1 GAGCTTCC
86162279 TGTTTATGTG
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
24 1 0.02
25 45 0.96
26 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GAGCTTCCCGATATATGGCTCACAA
Found at i:86163994 original size:32 final size:32
Alignment explanation
Indices: 86163958--86164041 Score: 123
Period size: 32 Copynumber: 2.6 Consensus size: 32
86163948 CGTAAGGGTG
86163958 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
* **
86163990 ACACTTCAAAAGGAAACATACACTTTGTGTGT
1 ACACTTGAAAAGGAAATGTACACTTTGTGTGT
*
86164022 ACCACTTGAAAAGGGAATGT
1 A-CACTTGAAAAGGAAATGT
86164042 GCACCTAGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 30 0.68
33 14 0.32
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.27
Consensus pattern (32 bp):
ACACTTGAAAAGGAAATGTACACTTTGTGTGT
Found at i:86165153 original size:19 final size:19
Alignment explanation
Indices: 86165129--86165184 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
86165119 GTACTAAGCC
86165129 ACACGGGCGTGTGTAATCT
1 ACACGGGCGTGTGTAATCT
*
86165148 ACAC-GGC---T-TAAAC-
1 ACACGGGCGTGTGTAATCT
86165161 ACACGGGCGTGTGTAATCT
1 ACACGGGCGTGTGTAATCT
86165180 ACACG
1 ACACG
86165185 ACCTAAACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 12
0.67 0.05 0.28
Matches are distributed among these distances:
13 4 0.14
14 7 0.24
15 1 0.03
17 1 0.03
18 7 0.24
19 9 0.31
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (19 bp):
ACACGGGCGTGTGTAATCT
Found at i:86165168 original size:32 final size:32
Alignment explanation
Indices: 86165128--86165206 Score: 131
Period size: 32 Copynumber: 2.5 Consensus size: 32
86165118 TGTACTAAGC
* *
86165128 CACACGGGCGTGTGTAATCTACACGGCTTAAA
1 CACACGGGCGTGTGTAATCTACACGACCTAAA
86165160 CACACGGGCGTGTGTAATCTACACGACCTAAA
1 CACACGGGCGTGTGTAATCTACACGACCTAAA
*
86165192 CACACGGGCGCGTGT
1 CACACGGGCGTGTGT
86165207 GGTACTGTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.27, T:0.19
Consensus pattern (32 bp):
CACACGGGCGTGTGTAATCTACACGACCTAAA
Found at i:86168088 original size:25 final size:23
Alignment explanation
Indices: 86168060--86168116 Score: 60
Period size: 25 Copynumber: 2.4 Consensus size: 23
86168050 ATTTTGAAGT
* * *
86168060 ATTTTTTATATTATATTATTTTGAC
1 ATTTTTTATAATAT-TTAGTTT-AA
*
86168085 ATTTTGTATAATATTTAGTTTAA
1 ATTTTTTATAATATTTAGTTTAA
86168108 ATTTTTTAT
1 ATTTTTTAT
86168117 TATCTGTACA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 9 0.33
24 6 0.22
25 12 0.44
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (23 bp):
ATTTTTTATAATATTTAGTTTAA
Found at i:86174595 original size:33 final size:32
Alignment explanation
Indices: 86174520--86174597 Score: 147
Period size: 32 Copynumber: 2.4 Consensus size: 32
86174510 CGTAAGGGTG
86174520 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
86174552 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
1 ACACTTGAAAAGGAAACGTACACTTTGTGTGT
86174584 ACCACTTGAAAAGG
1 A-CACTTGAAAAGG
86174598 GAATGTGCAC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 33 0.73
33 12 0.27
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (32 bp):
ACACTTGAAAAGGAAACGTACACTTTGTGTGT
Found at i:86180804 original size:94 final size:94
Alignment explanation
Indices: 86180643--86180819 Score: 248
Period size: 94 Copynumber: 1.9 Consensus size: 94
86180633 GTTATGTGAG
* * * * * *
86180643 AGCCAGTGTAAGACCATATTTGGGGCATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATATCTAGGACATAGCATCGGCATAGAGACGAGGGCCAGTGTAAGACGTG
86180708 TCT-AGGACATGCATCAGCCACATTACGAT
66 TCTGA-GACATGCATCAGCCACATTACGAT
* * * *
86180737 AGCCAGTGTAAGACCATGTCTAGGACATAGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATATCTAGGACATAGCATCGGCATAGAGACGAGGGCCAGTGTAAGACGTG
86180802 TCTGAGACATGCATCAGC
66 TCTGAGACATGCATCAGC
86180820 TAAGCTTCGT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 71 0.99
95 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.21
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATATCTAGGACATAGCATCGGCATAGAGACGAGGGCCAGTGTAAGACGTG
TCTGAGACATGCATCAGCCACATTACGAT
Found at i:86180848 original size:44 final size:44
Alignment explanation
Indices: 86180695--86180859 Score: 147
Period size: 44 Copynumber: 3.6 Consensus size: 44
86180685 GACGAGGGCT
* *
86180695 AGTGTAAGACGTGTCTAGGACATGCATCAGC-CA-CATTACGATAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCTAAGC-TT-CG-T-GCC
* * **
86180741 AGTGTAAGACCATGTCTAGGACATAGCATCGGCGTAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGC-TA-AGCTTCGTGCC
* *
86180789 AGTGTAAGACGTGTCT-GAGACATGCATCAGCTAAGCTTCGTGCT
1 AGTGTAAGACATGTCTAG-GACATGCATCAGCTAAGCTTCGTGCC
*
86180833 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTAGGACATGCAT
86180860 TACACAAGAG
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
44 31 0.32
45 3 0.03
46 17 0.17
47 24 0.24
48 19 0.19
49 1 0.01
50 1 0.01
51 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCTAAGCTTCGTGCC
Found at i:86181803 original size:55 final size:55
Alignment explanation
Indices: 86181688--86181806 Score: 159
Period size: 55 Copynumber: 2.2 Consensus size: 55
86181678 CTTAAACTTT
* * * * *
86181688 TAAGTCAGTATTGTCCACGGGTAGGCCACATGGGCGTGTGTCATAGCCGTGTCTA
1 TAAGTCAGTATTGTCCAAGGGTAGGCCACACGGGCATGTGTCATAGCCATGCCTA
* *
86181743 TAAGTCAGTATTGTTCAAGGGTAGGCCACACGGGCATGTGTCATGGCCATGCCCTA
1 TAAGTCAGTATTGTCCAAGGGTAGGCCACACGGGCATGTGTCATAGCCATG-CCTA
86181799 -AAGTCAGT
1 TAAGTCAGT
86181807 GTTGCACATG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 53 0.95
56 3 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCAAGGGTAGGCCACACGGGCATGTGTCATAGCCATGCCTA
Found at i:86184591 original size:67 final size:67
Alignment explanation
Indices: 86184512--86184645 Score: 250
Period size: 67 Copynumber: 2.0 Consensus size: 67
86184502 TTTCTTTATT
*
86184512 TTAAGTTTTAATATATTTTTAATTAATAAAAATTTAATTAATTATTTATTTTAATGAAATTTCTC
1 TTAAGTTCTAATATATTTTTAATTAATAAAAATTTAATTAATTATTTATTTTAATGAAATTTCTC
86184577 AG
66 AG
*
86184579 TTAAGTTCTAATATATTTTTAATTAATAAAACTTTAATTAATTATTTATTTTAATGAAATTTCTC
1 TTAAGTTCTAATATATTTTTAATTAATAAAAATTTAATTAATTATTTATTTTAATGAAATTTCTC
86184644 AG
66 AG
86184646 CTAACATGAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (67 bp):
TTAAGTTCTAATATATTTTTAATTAATAAAAATTTAATTAATTATTTATTTTAATGAAATTTCTC
AG
Found at i:86187861 original size:6 final size:6
Alignment explanation
Indices: 86187850--86187881 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
86187840 TCAAAAACAT
86187850 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
86187882 TTGTATTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:86205153 original size:93 final size:93
Alignment explanation
Indices: 86205045--86205215 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
86205035 GCCCATAAGT
*
86205045 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86205110 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
86205138 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86205203 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86205216 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:86205212 original size:46 final size:46
Alignment explanation
Indices: 86205037--86205212 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
86205027 TGTAACCCGC
* *
86205037 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
86205083 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
86205133 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
86205176 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86205213 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86209679 original size:93 final size:93
Alignment explanation
Indices: 86209571--86209741 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
86209561 GCCCATAAGT
* * * *
86209571 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86209636 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
86209664 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86209729 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86209742 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:86209738 original size:46 final size:46
Alignment explanation
Indices: 86209563--86209738 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
86209553 TGTAACCCGC
* * * *
86209563 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
86209609 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
86209659 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
86209702 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86209739 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86212084 original size:5 final size:5
Alignment explanation
Indices: 86212074--86212132 Score: 81
Period size: 5 Copynumber: 12.6 Consensus size: 5
86212064 TTATGTGTTC
*
86212074 TTTAT TTTAT TTTAT TTTA- -TTAT TTTAT TTTAT CTTA- -TTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
86212120 TTTAT TTTAT TTT
1 TTTAT TTTAT TTT
86212133 TCGCACCTCG
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
3 6 0.12
5 43 0.88
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:86212098 original size:13 final size:13
Alignment explanation
Indices: 86212080--86212132 Score: 63
Period size: 13 Copynumber: 3.9 Consensus size: 13
86212070 GTTCTTTATT
86212080 TTATTTTATTTTA
1 TTATTTTATTTTA
86212093 TTATTTTATTTTA
1 TTATTTTATTTTA
*
86212106 TCT-TATTATTTTA
1 T-TATTTTATTTTA
86212119 TTTTATTTTATTTT
1 --TTATTTTATTTT
86212133 TCGCACCTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 23 0.68
14 2 0.06
15 9 0.26
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:86212098 original size:18 final size:18
Alignment explanation
Indices: 86212075--86212130 Score: 103
Period size: 18 Copynumber: 3.1 Consensus size: 18
86212065 TATGTGTTCT
86212075 TTATTTTATTTTATTTTA
1 TTATTTTATTTTATTTTA
*
86212093 TTATTTTATTTTATCTTA
1 TTATTTTATTTTATTTTA
86212111 TTATTTTATTTTATTTTA
1 TTATTTTATTTTATTTTA
86212129 TT
1 TT
86212131 TTTCGCACCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (18 bp):
TTATTTTATTTTATTTTA
Found at i:86212101 original size:23 final size:23
Alignment explanation
Indices: 86212074--86212132 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
86212064 TTATGTGTTC
86212074 TTTATTTTATTTTATTTTATTAT
1 TTTATTTTATTTTATTTTATTAT
*
86212097 TTTATTTTATCTTATTATT-TTAT
1 TTTATTTTATTTTATT-TTATTAT
86212120 TTTATTTTATTTT
1 TTTATTTTATTTT
86212133 TCGCACCTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 31 0.94
24 2 0.06
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTATTTTATTTTATTTTATTAT
Found at i:86212356 original size:30 final size:30
Alignment explanation
Indices: 86212320--86212379 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
86212310 AACCTCAAAG
86212320 TTTTTATTCCTTGCATTTAGGTCCTTACTA
1 TTTTTATTCCTTGCATTTAGGTCCTTACTA
86212350 TTTTTATTCCTTGCATTTAGGTCCTTACTA
1 TTTTTATTCCTTGCATTTAGGTCCTTACTA
86212380 ACACATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.20, G:0.10, T:0.53
Consensus pattern (30 bp):
TTTTTATTCCTTGCATTTAGGTCCTTACTA
Found at i:86212724 original size:2 final size:2
Alignment explanation
Indices: 86212717--86212751 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
86212707 TCCTATTAAC
86212717 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86212752 TAAAACTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:86227747 original size:42 final size:44
Alignment explanation
Indices: 86227639--86227778 Score: 137
Period size: 43 Copynumber: 3.2 Consensus size: 44
86227629 AGCTCGTACA
* * **
86227639 ATGCCAACGTCCCAGAC-GTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAAACAG-GGTCTTACACATAAATCAAATATCG
* * * *
86227682 ATGCCACTGTCCCAGACAGGGTCTTCCACA-AAATCATATA-CG
1 ATGCCAATGTCCCAAACAGGGTCTTACACATAAATCAAATATCG
* *
86227724 ATGCCAATGTCCCAAACATGGTCTTACACATAAATCACAA-ATTG
1 ATGCCAATGTCCCAAACAGGGTCTTACACATAAATCA-AATATCG
86227768 ATGCCAATGTC
1 ATGCCAATGTC
86227779 TCAGATGTGG
Statistics
Matches: 80, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
42 28 0.35
43 38 0.47
44 14 0.17
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACAGGGTCTTACACATAAATCAAATATCG
Found at i:86229195 original size:21 final size:21
Alignment explanation
Indices: 86229171--86229214 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
86229161 CAACAATGAC
86229171 ATAACTCAAAATCATCATCAA
1 ATAACTCAAAATCATCATCAA
** *
86229192 ATAACTCAATCTTATCATCAA
1 ATAACTCAAAATCATCATCAA
86229213 AT
1 AT
86229215 TCTAAAATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.30
Consensus pattern (21 bp):
ATAACTCAAAATCATCATCAA
Found at i:86230642 original size:45 final size:45
Alignment explanation
Indices: 86230593--86230741 Score: 149
Period size: 45 Copynumber: 3.3 Consensus size: 45
86230583 TTCAGCCACA
* * *
86230593 GTCTTATTTATTTTCGACATGATGCCATAGTGCCTTTCAACTATG
1 GTCTTATTCATTTTCGACATGATGCCATAATGTCTTTCAACTATG
* * * * *
86230638 GTCTTATTCATTTCCGTCATGTTGCCATAATGTCTTTCAAGTATA
1 GTCTTATTCATTTTCGACATGATGCCATAATGTCTTTCAACTATG
* * *
86230683 GTCCTATTCA-TTTCAGATAT-AGTGTCATAATGTCTTTCAACTATG
1 GTCTTATTCATTTTC-GACATGA-TGCCATAATGTCTTTCAACTATG
* *
86230728 GTCTTTTTCGTTTT
1 GTCTTATTCATTTT
86230742 TCAAGACAAT
Statistics
Matches: 82, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
44 3 0.04
45 76 0.93
46 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (45 bp):
GTCTTATTCATTTTCGACATGATGCCATAATGTCTTTCAACTATG
Found at i:86233855 original size:45 final size:45
Alignment explanation
Indices: 86233783--86233998 Score: 291
Period size: 45 Copynumber: 4.9 Consensus size: 45
86233773 CGCACAGTAT
* *
86233783 TATT-GGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATGC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
86233827 TATTCGGGCCTTTGAGCTTAGCAAGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
86233872 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
86233917 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* *
86233962 TA-TCGGG--TTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
86233999 TTTGATAAAA
Statistics
Matches: 156, Mismatches: 13, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
42 14 0.09
43 13 0.08
44 8 0.05
45 120 0.77
46 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:86236612 original size:11 final size:11
Alignment explanation
Indices: 86236563--86236627 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 11
86236553 ACCCAACCCA
*
86236563 TGCATATAATG
1 TGCATATCATG
* *
86236574 AGTATATCATG
1 TGCATATCATG
* *
86236585 TGCATCTCATAA
1 TGCATATCAT-G
86236597 T--ATATCATG
1 TGCATATCATG
86236606 TGCATATCATG
1 TGCATATCATG
86236617 T-CATATCATG
1 TGCATATCATG
86236627 T
1 T
86236628 ATATCAAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
9 1 0.02
10 16 0.38
11 24 0.57
12 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (11 bp):
TGCATATCATG
Found at i:86236621 original size:10 final size:10
Alignment explanation
Indices: 86236598--86236633 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
86236588 ATCTCATAAT
86236598 ATATCATGTGC
1 ATATCATGT-C
86236609 ATATCATGTC
1 ATATCATGTC
86236619 ATATCATGT-
1 ATATCATGTC
86236628 ATATCA
1 ATATCA
86236634 AAATCTCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (10 bp):
ATATCATGTC
Found at i:86236627 original size:21 final size:21
Alignment explanation
Indices: 86236576--86236615 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
86236566 ATATAATGAG
*
86236576 TATATCATGTGCATCTCATAA
1 TATATCATGTGCATATCATAA
86236597 TATATCATGTGCATATCAT
1 TATATCATGTGCATATCAT
86236616 GTCATATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (21 bp):
TATATCATGTGCATATCATAA
Found at i:86244351 original size:11 final size:11
Alignment explanation
Indices: 86244302--86244366 Score: 55
Period size: 11 Copynumber: 6.1 Consensus size: 11
86244292 ACCCAACCCA
*
86244302 TGCATATAATG
1 TGCATATCATG
* *
86244313 AGTATATCATG
1 TGCATATCATG
* *
86244324 TGCATCTCATAA
1 TGCATATCAT-G
86244336 T--ATATCATG
1 TGCATATCATG
86244345 TGCATATCATG
1 TGCATATCATG
86244356 T-CATATCATG
1 TGCATATCATG
86244366 T
1 T
86244367 ATATCAAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
9 1 0.02
10 16 0.38
11 24 0.57
12 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (11 bp):
TGCATATCATG
Found at i:86244360 original size:10 final size:10
Alignment explanation
Indices: 86244337--86244372 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
86244327 ATCTCATAAT
86244337 ATATCATGTGC
1 ATATCATGT-C
86244348 ATATCATGTC
1 ATATCATGTC
86244358 ATATCATGT-
1 ATATCATGTC
86244367 ATATCA
1 ATATCA
86244373 AAATCTCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (10 bp):
ATATCATGTC
Found at i:86244366 original size:21 final size:21
Alignment explanation
Indices: 86244315--86244354 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
86244305 ATATAATGAG
*
86244315 TATATCATGTGCATCTCATAA
1 TATATCATGTGCATATCATAA
86244336 TATATCATGTGCATATCAT
1 TATATCATGTGCATATCAT
86244355 GTCATATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (21 bp):
TATATCATGTGCATATCATAA
Found at i:86251492 original size:45 final size:45
Alignment explanation
Indices: 86251364--86251534 Score: 217
Period size: 45 Copynumber: 3.9 Consensus size: 45
86251354 CGCACAGTAT
** * *
86251364 TATTCGGGATTTTGAGCCTAGCAGGCTATAATGCCGGTCATATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
* *
86251409 TATTCGGGCCTTTGAGCCTAGCACGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
86251454 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
* *
86251499 TA-TCGGG--TTTAAAACCTAGCAGGCTA-AATGCCGGTG
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTG
86251535 GTTTGATAAA
Statistics
Matches: 115, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
42 13 0.11
43 13 0.11
44 5 0.04
45 83 0.72
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:86255754 original size:27 final size:27
Alignment explanation
Indices: 86255715--86255815 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 27
86255705 CAATATCGCA
**
86255715 GCAAAGCTTCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* *
86255742 GCAAAGCCACCAGTATCAGTATATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* *
86255769 GCAAAGCCACCGGTAACAGTAATTGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
86255796 GCAGAGCCACCAGT-ACAGTA
1 GCAAAGCCACCAGTAACAGTA
86255816 CTTCCTCCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
26 6 0.09
27 58 0.91
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:86258730 original size:26 final size:26
Alignment explanation
Indices: 86258701--86258926 Score: 97
Period size: 26 Copynumber: 9.1 Consensus size: 26
86258691 TCCTCTCTCA
86258701 AGCCATATAACAGGAAGCTCACAAAG
1 AGCCATATAACAGGAAGCTCACAAAG
**
86258727 AGCCAT-TAATTGGGAAGCTCACAAAG
1 AGCCATATAA-CAGGAAGCTCACAAAG
* * *
86258753 AGCC-TAT--CAGAAAGCTTATC--CG
1 AGCCATATAACAGGAAGCTCA-CAAAG
* * *
86258775 GGCTATATAACAGGAAGCTCA-TAAG
1 AGCCATATAACAGGAAGCTCACAAAG
* * *
86258800 AGCCATA-ATCAGAAAGTTCACAAAG
1 AGCCATATAACAGGAAGCTCACAAAG
* * *
86258825 A--AATTTTAATCAGGAAGTTCACAAAG
1 AGCCA-TATAA-CAGGAAGCTCACAAAG
* * *
86258851 AGCC-TTTAATCAGG-AGCTC-CGAAT
1 AGCCATATAA-CAGGAAGCTCACAAAG
* ** **
86258875 AGCCATATATCAGGAAATTCA-AGCG
1 AGCCATATAACAGGAAGCTCACAAAG
86258900 AGCCATAT--CAGGAAGCTCACAAAG
1 AGCCATATAACAGGAAGCTCACAAAG
86258924 AGC
1 AGC
86258927 TATGTTTGTG
Statistics
Matches: 144, Mismatches: 38, Indels: 38
0.65 0.17 0.17
Matches are distributed among these distances:
22 3 0.02
23 20 0.14
24 28 0.19
25 42 0.29
26 51 0.35
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (26 bp):
AGCCATATAACAGGAAGCTCACAAAG
Found at i:86261084 original size:74 final size:75
Alignment explanation
Indices: 86260987--86261146 Score: 205
Period size: 74 Copynumber: 2.1 Consensus size: 75
86260977 CATAAATTAA
* * *
86260987 AAAAGAAAATTAGGATTATTCCCTTACTAATAAAGAAGGAAAATGAAAAGTCAGAAAAAAGAATT
1 AAAAGAATA-TAGGATTATTCCCTTACTAATAAACAAGGAAAATGAAAAGTCAAAAAAAAGAATT
86261052 ATATT-ATTCC
65 ATATTCATTCC
* * * * *
86261062 AAAAGAATATAGGATTATTCCCTTATTAATAAACAATGTAAATGAACAGTTAAAAAAAAGAATTA
1 AAAAGAATATAGGATTATTCCCTTACTAATAAACAAGGAAAATGAAAAGTCAAAAAAAAGAATTA
* * *
86261127 TTTTCTTTTC
66 TATTCATTCC
86261137 AAAAGAATAT
1 AAAAGAATAT
86261147 TAATTTCCAT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
74 52 0.71
75 21 0.29
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (75 bp):
AAAAGAATATAGGATTATTCCCTTACTAATAAACAAGGAAAATGAAAAGTCAAAAAAAAGAATTA
TATTCATTCC
Found at i:86261294 original size:132 final size:135
Alignment explanation
Indices: 86261122--86261399 Score: 373
Period size: 138 Copynumber: 2.1 Consensus size: 135
86261112 TAAAAAAAAG
* * ** ***
86261122 AATTATTTTCTTTTCAAAAGAATATTAATTTCCATATCTTTTATATTTT-TTCGA-ATTTATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGATACCAATTAA
* *
86261185 TATAA-TTATATTAATAAATTTGAAAAAATATATACAATTAATATTTTGTATGCATCAAATTCAT
66 TATAATTTATATTAATAAATTCGAAAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
86261249 ATATT
131 ATATT
* * *
86261254 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGATACCAATTCA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGATACCAATTAA
** *
86261319 TATAATTTTTTATATTAATAAATTCGGTAAAATATATTCAATTAATATTTTGTATGAATCAAATT
66 TATAA---TTTATATTAATAAATTCGAAAAAATATATACAATTAATATTTTGTATGAATCAAATT
86261384 CATATATT
128 CATATATT
86261392 AATTATAT
1 AATTATAT
86261400 CTATGTTCTC
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
132 45 0.36
133 3 0.02
134 10 0.08
138 67 0.54
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.47
Consensus pattern (135 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATATCTTTTATATTTTGACCGATACCAATTAA
TATAATTTATATTAATAAATTCGAAAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATT
Found at i:86262617 original size:2 final size:2
Alignment explanation
Indices: 86262612--86262665 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
86262602 TATATATATA
86262612 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
86262654 TG TG TG TG TG TG
1 TG TG TG TG TG TG
86262666 GATGAGTCAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:86265655 original size:19 final size:19
Alignment explanation
Indices: 86265631--86265668 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
86265621 TAATTGAATA
86265631 GACTTAGGTGAGCAAACAT
1 GACTTAGGTGAGCAAACAT
86265650 GACTTAGGTGAGCAAACAT
1 GACTTAGGTGAGCAAACAT
86265669 CGCCCCCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (19 bp):
GACTTAGGTGAGCAAACAT
Found at i:86286555 original size:20 final size:19
Alignment explanation
Indices: 86286507--86286557 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
86286497 ACAGATAAAC
86286507 ATTAAATTAA-AATTTAAT
1 ATTAAATTAATAATTTAAT
*
86286525 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-AATTTAAT
86286545 ATTAAATTAATAA
1 ATTAAATTAATAA
86286558 AATATTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.30
19 3 0.11
20 16 0.59
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
ATTAAATTAATAATTTAAT
Found at i:86287281 original size:24 final size:24
Alignment explanation
Indices: 86287249--86287296 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
86287239 AATTAGGCTC
86287249 TAGTGATTGAAATTATGTCCAGAA
1 TAGTGATTGAAATTATGTCCAGAA
86287273 TAGTGATTGAAATTATGTCCAGAA
1 TAGTGATTGAAATTATGTCCAGAA
86287297 GCATCATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
TAGTGATTGAAATTATGTCCAGAA
Found at i:86288219 original size:15 final size:15
Alignment explanation
Indices: 86288195--86288226 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86288185 TATGCATACA
*
86288195 AAATATAAAAGACAT
1 AAATACAAAAGACAT
86288210 AAATACAAAAGACAT
1 AAATACAAAAGACAT
86288225 AA
1 AA
86288227 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:86288467 original size:22 final size:22
Alignment explanation
Indices: 86288425--86288468 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
86288415 TGGTGCAAAC
*
86288425 AAAAAGAGCAAGGAAAAGAAAA
1 AAAAAGAGCAAAGAAAAGAAAA
* *
86288447 AAAAAGAG-AAAGACAAGGAAA
1 AAAAAGAGCAAAGAAAAGAAAA
86288468 A
1 A
86288469 GAGAAAGGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.73, C:0.05, G:0.23, T:0.00
Consensus pattern (22 bp):
AAAAAGAGCAAAGAAAAGAAAA
Found at i:86301859 original size:6 final size:6
Alignment explanation
Indices: 86301805--86301857 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
86301795 ACTTGAAGAT
* * * *
86301805 GATGGA GATGGA GATGGA GATGGA GATGGA AATGGT GATGGT GATGGT
1 GATGGA GATGGA GATGGA GATGGA GATGGA GATGGA GATGGA GATGGA
86301853 GATGG
1 GATGG
86301858 TGCACTGGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.28, C:0.00, G:0.49, T:0.23
Consensus pattern (6 bp):
GATGGA
Found at i:86302036 original size:76 final size:76
Alignment explanation
Indices: 86301910--86302065 Score: 312
Period size: 76 Copynumber: 2.1 Consensus size: 76
86301900 AGTCTTCCAG
86301910 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
1 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
86301975 AACACGAAAGA
66 AACACGAAAGA
86301986 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
1 AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
86302051 AACACGAAAGA
66 AACACGAAAGA
86302062 AAAC
1 AAAC
86302066 AACAAAACAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 80 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (76 bp):
AAACCGATCTTTGAGTCCTTGCGGTCATATGTAACAAGAGTATTCCGCACAATGATTCCTATTAC
AACACGAAAGA
Found at i:86302634 original size:27 final size:27
Alignment explanation
Indices: 86302596--86302651 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
86302586 CAATATTAAC
86302596 AATATTACATAACTAATCATTTTATAT
1 AATATTACATAACTAATCATTTTATAT
86302623 AATATTACATAACTAATCATTTTATAT
1 AATATTACATAACTAATCATTTTATAT
86302650 AA
1 AA
86302652 CAAGTAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (27 bp):
AATATTACATAACTAATCATTTTATAT
Found at i:86305626 original size:31 final size:31
Alignment explanation
Indices: 86305551--86305627 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
86305541 ATTACGTTAG
* *
86305551 TAGTCACTTAACTATTAGTAAATTTCATTTT
1 TAGTCACTCAACTATTAGTAAATATCATTTT
* * *
86305582 TGGTTACTTAACTATTAGTAAATATCATTTT
1 TAGTCACTCAACTATTAGTAAATATCATTTT
86305613 TAGTCA-TCCAACTAT
1 TAGTCACT-CAACTAT
86305628 AAAAATTACA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 1 0.03
31 38 0.97
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.45
Consensus pattern (31 bp):
TAGTCACTCAACTATTAGTAAATATCATTTT
Found at i:86305772 original size:33 final size:33
Alignment explanation
Indices: 86305735--86305798 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
86305725 TTTAACCCCT
86305735 TATATTTATATATCATGTAAATTCAGTCTTAGA
1 TATATTTATATATCATGTAAATTCAGTCTTAGA
86305768 TATATTTATATATCATGTAAATTCAGTCTTA
1 TATATTTATATATCATGTAAATTCAGTCTTA
86305799 ATTCTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.47
Consensus pattern (33 bp):
TATATTTATATATCATGTAAATTCAGTCTTAGA
Found at i:86309814 original size:19 final size:20
Alignment explanation
Indices: 86309790--86309828 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
86309780 TCTTATTTTT
86309790 TATTTGTTTTT-TGTTTTAA
1 TATTTGTTTTTATGTTTTAA
86309809 TATTTGTTTTTATGTTTTAA
1 TATTTGTTTTTATGTTTTAA
86309829 ATGTATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.10, T:0.72
Consensus pattern (20 bp):
TATTTGTTTTTATGTTTTAA
Found at i:86309846 original size:25 final size:23
Alignment explanation
Indices: 86309790--86309854 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 23
86309780 TCTTATTTTT
*
86309790 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
86309809 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
86309832 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
86309855 GTTTTTTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 11 0.28
20 6 0.15
21 2 0.05
23 6 0.15
24 3 0.08
25 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:86313168 original size:13 final size:12
Alignment explanation
Indices: 86313145--86313207 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
86313135 AGTAATTTTA
86313145 TATTAAAATTAT
1 TATTAAAATTAT
86313157 TATT-AAA-TAT
1 TATTAAAATTAT
86313167 TATTAATAATTA-
1 TATTAA-AATTAT
*
86313179 TATTAAGAA-TGT
1 TATTAA-AATTAT
86313191 TATT-AAATTAT
1 TATTAAAATTAT
86313202 ATATTA
1 -TATTA
86313208 TTTTATTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 22 0.54
13 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTAAAATTAT
Found at i:86313172 original size:22 final size:23
Alignment explanation
Indices: 86313145--86313207 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
86313135 AGTAATTTTA
86313145 TATTAAAATTATTATTA-AATAT
1 TATTAAAATTATTATTAGAATAT
*
86313167 TATTAATAATTA-TATTAAGAATGT
1 TATTAA-AATTATTATT-AGAATAT
86313191 TATT-AAATTATATATTA
1 TATTAAAATTAT-TATTA
86313208 TTTTATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 15 0.43
23 8 0.23
24 12 0.34
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
TATTAAAATTATTATTAGAATAT
Found at i:86313315 original size:25 final size:26
Alignment explanation
Indices: 86313266--86313316 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
86313256 TATTTTATTT
*
86313266 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
86313292 TTATTAAAATTTA-ATAACAATAATC
1 TTATTAAAATATATATAACAATAATC
86313317 ATCTACCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:86313440 original size:44 final size:46
Alignment explanation
Indices: 86313389--86313481 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
86313379 TACAACATTT
*
86313389 ATTCCATTCAATCAAACACA-AGAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATAGAATTACTGATTACAGCTCTATTCC
* * *
86313433 ATTCCATTCAACCAAACAATTGAATTATTGATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
86313479 ATT
1 ATT
86313482 ACAGTGAACG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 22 0.52
45 1 0.02
46 18 0.43
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
Found at i:86314921 original size:8 final size:8
Alignment explanation
Indices: 86314910--86314938 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
86314900 TTTAAATATT
86314910 TTATTTAC
1 TTATTTAC
86314918 TTATTTAC
1 TTATTTAC
86314926 TTATTTAC
1 TTATTTAC
86314934 TTATT
1 TTATT
86314939 GTATTATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (8 bp):
TTATTTAC
Found at i:86315042 original size:3 final size:3
Alignment explanation
Indices: 86315018--86315155 Score: 89
Period size: 3 Copynumber: 45.0 Consensus size: 3
86315008 TGGATTGCTA
* * * * *
86315018 ATT AAT ATT ATC ATT GTT ATT ATT ATT CTT ACT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
* * * * * * * *
86315064 GTT ATT ATT CTT ACT ATT ATT ATT ATC GTT ACT ATT TTT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
86315112 ATT -TAT ATAT ATT ATT ATT ACT ATT ATT TTT CACT ATT ATT ATT
1 ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
86315156 GTTAGAATTA
Statistics
Matches: 99, Mismatches: 32, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
2 1 0.01
3 89 0.90
4 9 0.09
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:86315155 original size:25 final size:26
Alignment explanation
Indices: 86315092--86315152 Score: 58
Period size: 25 Copynumber: 2.4 Consensus size: 26
86315082 ATTATTATCG
*
86315092 TTACTATT-TTTATTACTATTATTTA
1 TTACTATTATTTATTACTATTATTAA
*
86315117 TATA-TATTA-TTATTACTATTATT-T
1 T-TACTATTATTTATTACTATTATTAA
86315141 TTCACTATTATT
1 TT-ACTATTATT
86315153 ATTGTTAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
23 1 0.03
24 2 0.07
25 24 0.80
26 3 0.10
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (26 bp):
TTACTATTATTTATTACTATTATTAA
Found at i:86315485 original size:11 final size:12
Alignment explanation
Indices: 86315469--86315499 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
86315459 TTGTGTGTTC
86315469 TTTATTTTA-TT
1 TTTATTTTATTT
86315480 TTTATTTTATTT
1 TTTATTTTATTT
86315492 TTTATTTT
1 TTTATTTT
86315500 CACAAATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:86321030 original size:46 final size:46
Alignment explanation
Indices: 86320970--86321150 Score: 256
Period size: 46 Copynumber: 3.9 Consensus size: 46
86320960 TTTGACATGA
* * * ** *
86320970 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGCCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
*
86321016 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
86321062 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
86321108 TGCCATGGTATCTTTCAACCATGCTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
86321151 GAGAGCACAC
Statistics
Matches: 124, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 4 0.03
46 120 0.97
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:86335052 original size:44 final size:43
Alignment explanation
Indices: 86334999--86335140 Score: 108
Period size: 44 Copynumber: 3.2 Consensus size: 43
86334989 CTTAAACCCC
* *
86334999 TAAGTAGTAGGGCAACAGGCTGAAGATTATAGATATTATCTCTT
1 TAAGCAGTAGGGCAACAGGCTGAAGATTATAGAT-TTATCTCCT
** * * ** * *
86335043 TAAGCAGTAGTGG-AGTA-GATCGAAAACGATGAGCTTTAACTCCT
1 TAAGCAGTAG-GGCAACAGGCT-GAAGATTAT-AGATTTATCTCCT
* *
86335087 TAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCC
1 TAAGCAGTAGGGCAACAGGCTGAAGATTATAGAT-TTATCTCCT
*
86335131 TAAGTAGTAG
1 TAAGCAGTAG
86335141 TGGAGCAGAT
Statistics
Matches: 71, Mismatches: 21, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
43 7 0.10
44 57 0.80
45 7 0.10
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (43 bp):
TAAGCAGTAGGGCAACAGGCTGAAGATTATAGATTTATCTCCT
Found at i:86335052 original size:88 final size:88
Alignment explanation
Indices: 86334898--86335313 Score: 588
Period size: 88 Copynumber: 4.7 Consensus size: 88
86334888 AATCTCCACT
* *
86334898 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTG-GGAATTACAGATCTTATCTCCCTAAGTAG
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAG-ATTACAGATCTTATCTCCCTAAGCAG
*
86334962 TAGTGG-GATAGATCGAAGACGGTG
65 TAGTGGAG-TAGATCGAAGACAGTG
* * * **
86334986 AGCCTTAAACCCCTAAGTAGTAGGGCAACAGGCTGAAGATTATAGATATTATCTCTTTAAGCAGT
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
*
86335051 AGTGGAGTAGATCGAAAAC-GATG
66 AGTGGAGTAGATCGAAGACAG-TG
* * * * *
86335074 AGCTTTAACTCCTTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
* *
86335139 AGTGGAGCAGATCGAAGACAGTA
66 AGTGGAGTAGATCGAAGACAGTG
* * *
86335162 AGCCTTAACCCCCTAAGTAGTAGGGAAACATGCTAGAA-ATTACAGATCTTATCTCTCTAAGCAG
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCT-GAAGATTACAGATCTTATCTCCCTAAGCAG
86335226 TAGTGGAGTAGATCGAAGACAGTG
65 TAGTGGAGTAGATCGAAGACAGTG
*
86335250 AGCCTTAACCCCCTAAGCAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAG
1 AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAG
86335314 CTGTAACACC
Statistics
Matches: 287, Mismatches: 35, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
87 4 0.01
88 277 0.97
89 6 0.02
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGTAGTAGGGCAACAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGTAGATCGAAGACAGTG
Found at i:86335156 original size:44 final size:44
Alignment explanation
Indices: 86335082--86335313 Score: 129
Period size: 44 Copynumber: 5.3 Consensus size: 44
86335072 TGAGCTTTAA
* * *
86335082 CTCCTTAAGCAGTAGGGCAACAG-GCTGAAGATTACAGATCTTAT
1 CTCCCTAAGCAGTAGGGAAACAGATC-GAAGATTACAGATCTTAT
* * * * *
86335126 CTCCCTAAGTAGTAGTGG-AGCAGATCGAAGACAGTA-AG-CCTTAA
1 CTCCCTAAGCAGTAG-GGAAACAGATCGAAG--ATTACAGATCTTAT
* * * *
86335170 CCCCCTAAGTAGTAGGGAAACATGCTAGAA-ATTACAGATCTTAT
1 CTCCCTAAGCAGTAGGGAAACA-GATCGAAGATTACAGATCTTAT
* ** * ** * *
86335214 CTCTCTAAGCAGTAGTGG-AGTAGATCGAAGA-CAGTGAGCCTTAA
1 CTCCCTAAGCAGTAG-GGAAACAGATCGAAGATTACAGA-TCTTAT
* * *
86335258 CCCCCTAAGCAGTAGGGCAACAG-GCTGAAGATTACAGATCTTAT
1 CTCCCTAAGCAGTAGGGAAACAGATC-GAAGATTACAGATCTTAT
86335302 CTCCCTAAGCAG
1 CTCCCTAAGCAG
86335314 CTGTAACACC
Statistics
Matches: 137, Mismatches: 37, Indels: 28
0.68 0.18 0.14
Matches are distributed among these distances:
42 3 0.02
43 15 0.11
44 101 0.74
45 15 0.11
46 3 0.02
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (44 bp):
CTCCCTAAGCAGTAGGGAAACAGATCGAAGATTACAGATCTTAT
Found at i:86336283 original size:42 final size:42
Alignment explanation
Indices: 86336220--86336346 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
86336210 CTTCGTTTTC
** * *
86336220 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
86336263 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
86336304 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
86336345 TC
1 TC
86336347 TCACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:86336373 original size:46 final size:46
Alignment explanation
Indices: 86336305--86336430 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
86336295 ATTCATATAT
* * * *
86336305 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACGAAGCACATATCACAC
* * * * *
86336351 TGATGCCATATTCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACAC-GAAGCACATATCACAC
*
86336398 CAATGCCATATCCCAGATATGGTCTTACACGAA
1 CGATGCCATATCCCAGATATGGTCTTACACGAA
86336431 AATCACTTGT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
46 27 0.42
47 38 0.58
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTACACGAAGCACATATCACAC
Found at i:86336391 original size:88 final size:89
Alignment explanation
Indices: 86336263--86336430 Score: 205
Period size: 88 Copynumber: 1.9 Consensus size: 89
86336253 CTTCACATAA
* * * *
86336263 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAT-CGATGCCATAGCCCAGCTATGG
1 TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCAATGCCATAGCCCAGATATGG
86336327 TCTTACACGAATCACATATCTCAC
66 TCTTACACGAATCACATATCTCAC
** * *
86336351 TGATGCCATATTCCAGATATGGTCTTATACAGTA-GCATATATCACACCAATGCCATATCCCAGA
1 TGATGCCATAGCCCAGATATGGTCTTACACA-TATGCATATAT----CCAATGCCATAGCCCAGA
86336415 TATGGTCTTACACGAA
61 TATGGTCTTACACGAA
86336431 AATCACTTGT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
88 34 0.52
89 2 0.03
93 30 0.45
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (89 bp):
TGATGCCATAGCCCAGATATGGTCTTACACATATGCATATATCCAATGCCATAGCCCAGATATGG
TCTTACACGAATCACATATCTCAC
Found at i:86336496 original size:31 final size:31
Alignment explanation
Indices: 86336453--86336631 Score: 252
Period size: 31 Copynumber: 5.8 Consensus size: 31
86336443 CTTGTCACTT
* * *
86336453 GTAGCCGAAGCTACCACTATTCATTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* * *
86336484 GTAGCTGGAGCTATCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
86336515 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
86336546 GTAGCCGGAACTACCA-TTTTCATTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
86336576 GTAGCCGGAACTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
86336607 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
86336632 TGTCATTTGT
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
30 29 0.22
31 103 0.78
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:86336591 original size:61 final size:62
Alignment explanation
Indices: 86336453--86336631 Score: 238
Period size: 61 Copynumber: 2.9 Consensus size: 62
86336443 CTTGTCACTT
* * * * * *
86336453 GTAGCC-GAAGCTACCACTATTCATTGATCAGGTAGCTGGAGCTATCATTTTTCACTGATCAG
1 GTAGCCGGAA-CTACCACTTTTCACTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAG
* *
86336515 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCCGGAACTACCA-TTTTCATTGATCAG
1 GTAGCCGGAACTACCACTTTTCACTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAG
*
86336576 GTAGCCGGAACTACCACTTTTCACTGATCAGGTAG-CTGAAGCTACCACTTTTCACT
1 GTAGCCGGAACTACCACTTTTCACTGATCAGGTAGCCGGAA-CTACCACTTTTCACT
86336632 TGTCATTTGT
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
60 4 0.04
61 53 0.51
62 45 0.43
63 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (62 bp):
GTAGCCGGAACTACCACTTTTCACTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAG
Found at i:86336597 original size:92 final size:93
Alignment explanation
Indices: 86336453--86336631 Score: 272
Period size: 92 Copynumber: 1.9 Consensus size: 93
86336443 CTTGTCACTT
* * * *
86336453 GTAGCCGAAGCTACCACTATTCATTGATCAGGTAGCTGGAGCTATCATTTTTCACTGATCAGGTA
1 GTAGCCGAAGCTACCACTATTCATTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAGGTA
*
86336518 GCCGGAGCTACCACTTTTCACTGATCAG
66 GCCGAAGCTACCACTTTTCACTGATCAG
*
86336546 GTAGCCGGAA-CTACCA-TTTTCATTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAGGT
1 GTAGCC-GAAGCTACCACTATTCATTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAGGT
*
86336609 AGCTGAAGCTACCACTTTTCACT
65 AGCCGAAGCTACCACTTTTCACT
86336632 TGTCATTTGT
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
92 63 0.81
93 12 0.15
94 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (93 bp):
GTAGCCGAAGCTACCACTATTCATTGATCAGGTAGCCGGAACTACCACTTTTCACTGATCAGGTA
GCCGAAGCTACCACTTTTCACTGATCAG
Found at i:86336711 original size:50 final size:51
Alignment explanation
Indices: 86336607--86336735 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
86336597 CACTGATCAG
* * *
86336607 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
* *
86336658 GTAGTCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
86336708 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
86336736 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 44 0.63
51 26 0.37
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:86338895 original size:88 final size:88
Alignment explanation
Indices: 86338742--86339113 Score: 453
Period size: 88 Copynumber: 4.2 Consensus size: 88
86338732 TTACAACAGC
* * *
86338742 AGTGGAGCAGATTGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAAGGCAACAGGCTGAAAATTA
1 AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAAGGCAACAGACTGAAAATTA
86338807 CAGATCTTATC-CCCTTAAGCAGT
66 CAGATCTTATCTCCC-TAAGCAGT
* * *
86338830 AGTGGAGCAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAATAAGGCAACAGACTGAAGATTA
1 AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAAGGCAACAGACTGAAAATTA
* *
86338895 CAGATCTTATCTCCCTAAGAAAAT
66 CAGATCTTATCTCCCTAAG-CAGT
* * * * * *
86338919 AGTGGAGTAGATCGAAGACAGTGAGCCTTAACCCCCCAAGTAGTAGGGCAACAGGCTAAAAATTA
1 AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAAGGCAACAGACTGAAAATTA
* **
86338984 CAGATCTGATCTCCCTAATTAGT
66 CAGATCTTATCTCCCTAAGCAGT
* * * * * * *
86339007 AGTGGAGCAGATCGAAGACAATAAACTTTAACCCCCTAAGTAGT-GGGACAACA-AGCTGGAAAT
1 AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAAGG-CAACAGA-CTGAAAAT
*
86339070 TACAGATCCTATCTCCCTAAGCAGT
64 TACAGATCTTATCTCCCTAAGCAGT
*
86339095 AGTAGAGCAGATCGAAGAC
1 AGTGGAGCAGATCGAAGAC
86339114 GGTAAGCAGT
Statistics
Matches: 245, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
87 3 0.01
88 164 0.67
89 78 0.32
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (88 bp):
AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAAGGCAACAGACTGAAAATTA
CAGATCTTATCTCCCTAAGCAGT
Found at i:86339040 original size:177 final size:176
Alignment explanation
Indices: 86338742--86339113 Score: 473
Period size: 177 Copynumber: 2.1 Consensus size: 176
86338732 TTACAACAGC
* * * *
86338742 AGTGGAGCAGATTGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAAGGCAACAGGCTGAAAATTA
1 AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCCAAGCAGTAAGGCAACAGGCTAAAAATTA
* * * *
86338807 CAGATCTTATCCCCTTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCA
66 CAGATCTGATCCCCTTAAGCAGTAGTGGAGCAGATCAAAGACAATAAACCTTAACCCCCTAAGCA
*
86338872 ATAAGG-CAAC-AGACT-GAAGATTACAGATCTTATCTCCCTAAGAAAAT
131 AT-AGGACAACAAG-CTGGAA-ATTACAGATCCTATCTCCCTAAG-AAAT
* * *
86338919 AGTGGAGTAGATCGAAGACAGTGAGCCTTAACCCCCCAAGTAGTAGGGCAACAGGCTAAAAATTA
1 AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCCAAGCAGTAAGGCAACAGGCTAAAAATTA
** * * *
86338984 CAGATCTGATCTCCC-TAATTAGTAGTGGAGCAGATCGAAGACAATAAACTTTAACCCCCTAAGT
66 CAGATCTGATC-CCCTTAAGCAGTAGTGGAGCAGATCAAAGACAATAAACCTTAACCCCCTAAGC
* * * *
86339048 AGTGGGACAACAAGCTGGAAATTACAGATCCTATCTCCCTAAGCAGT
130 AATAGGACAACAAGCTGGAAATTACAGATCCTATCTCCCTAAGAAAT
*
86339095 AGTAGAGCAGATCGAAGAC
1 AGTGGAGCAGATCGAAGAC
86339114 GGTAAGCAGT
Statistics
Matches: 168, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
176 21 0.12
177 139 0.83
178 8 0.05
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (176 bp):
AGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCCAAGCAGTAAGGCAACAGGCTAAAAATTA
CAGATCTGATCCCCTTAAGCAGTAGTGGAGCAGATCAAAGACAATAAACCTTAACCCCCTAAGCA
ATAGGACAACAAGCTGGAAATTACAGATCCTATCTCCCTAAGAAAT
Found at i:86340736 original size:3 final size:3
Alignment explanation
Indices: 86340712--86340878 Score: 97
Period size: 3 Copynumber: 54.7 Consensus size: 3
86340702 TGGATTGCTA
* * * * *
86340712 ATT AAT ATT ATC ATT GTT ATT ATT ATT CTT ACT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
* * * * * *
86340758 GTT ATT ATT CTT ACT ATT ATAT GTT ATT ATT ATT ATCG A-T ACT ATT
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT AT-T ATT ATT ATT
* * * * *
86340804 TTT ATT ACT ATT ATT -TAT ATAC ATT ATT ATT ATT ACT ATT ATT TTT
1 ATT ATT ATT ATT ATT AT-T AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* *
86340850 CATT ATT ATT ATT -TT ACT ATT ATT TTT AT
1 -ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
86340879 ATACTATAGT
Statistics
Matches: 121, Mismatches: 35, Indels: 16
0.70 0.20 0.09
Matches are distributed among these distances:
2 4 0.03
3 105 0.87
4 12 0.10
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:86340770 original size:28 final size:28
Alignment explanation
Indices: 86340728--86340873 Score: 119
Period size: 28 Copynumber: 5.4 Consensus size: 28
86340718 ATTATCATTG
86340728 TTATTATTATTCTTACTATTATATATTA
1 TTATTATTATTCTTACTATTATATATTA
* *
86340756 TTGTTATTATTCTTACTATTATATGTTA
1 TTATTATTATTCTTACTATTATATATTA
* *
86340784 TTATTATTA-TCGATACTATT-TTTATTA
1 TTATTATTATTC-TTACTATTATATATTA
* *
86340811 CTATTATT-TAT-ATAC-ATTAT-TATTA
1 TTATTATTAT-TCTTACTATTATATATTA
* * *
86340836 TTACTATTATTTTTCATTATTAT-TATT-
1 TTATTATTATTCTT-ACTATTATATATTA
*
86340863 TTACTATTATT
1 TTATTATTATT
86340874 TTTATATACT
Statistics
Matches: 99, Mismatches: 11, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
25 15 0.15
26 7 0.07
27 26 0.26
28 51 0.52
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (28 bp):
TTATTATTATTCTTACTATTATATATTA
Found at i:86340789 original size:68 final size:68
Alignment explanation
Indices: 86340717--86340873 Score: 176
Period size: 68 Copynumber: 2.3 Consensus size: 68
86340707 TGCTAATTAA
* * * ** *
86340717 TATTATCATTGTTATTATTATTCTTACTATTATATAT-TATTGTTATTATTCTTACTATTATATG
1 TATTATTATTGTTACTATTATTATTACTATTATATATATA-CATTATTATTATTACTATTAT-TG
86340781 TT-AT
64 TTCAT
* * * * *
86340785 TATTATTATCGATACTATTTTTATTACTATTATTTATATACATTATTATTATTACTATTATTTTT
1 TATTATTATTGTTACTATTATTATTACTATTATATATATACATTATTATTATTACTATTATTGTT
86340850 CAT
66 CAT
86340853 TATTATTATT-TTACTATTATT
1 TATTATTATTGTTACTATTATT
86340874 TTTATATACT
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
67 12 0.16
68 59 0.81
69 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (68 bp):
TATTATTATTGTTACTATTATTATTACTATTATATATATACATTATTATTATTACTATTATTGTT
CAT
Found at i:86340829 original size:13 final size:13
Alignment explanation
Indices: 86340797--86340874 Score: 72
Period size: 13 Copynumber: 5.8 Consensus size: 13
86340787 TTATTATCGA
86340797 TACTATT-TTTAT
1 TACTATTATTTAT
86340809 TACTATTATTTAT
1 TACTATTATTTAT
86340822 ATAC-ATTATTATTAT
1 -TACTATTA-T-TTAT
86340837 TACTATTATTT-T
1 TACTATTATTTAT
* *
86340849 TCATTATTATTATTT
1 T-ACTATTATT-TAT
86340864 TACTATTATTT
1 TACTATTATTT
86340875 TTATATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 15
0.77 0.03 0.21
Matches are distributed among these distances:
12 9 0.16
13 20 0.36
14 17 0.30
15 10 0.18
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (13 bp):
TACTATTATTTAT
Found at i:86342142 original size:26 final size:26
Alignment explanation
Indices: 86342113--86342164 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
86342103 TATTAAGAGA
*
86342113 AATTATTTTCTTAAAAGA-CTAAAATT
1 AATTATTTTATTAAAAGATC-AAAATT
86342139 AATTATTTTATTAAAAGATCAAAATT
1 AATTATTTTATTAAAAGATCAAAATT
86342165 TTTAGGTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (26 bp):
AATTATTTTATTAAAAGATCAAAATT
Found at i:86346210 original size:12 final size:12
Alignment explanation
Indices: 86346182--86346220 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
86346172 GGATTTAAAT
86346182 AATAAATATATCAA
1 AATAAATAT-TC-A
*
86346196 AATTAATATTCA
1 AATAAATATTCA
86346208 AATAAATATTCA
1 AATAAATATTCA
86346220 A
1 A
86346221 TCTGTTGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 13 0.57
13 2 0.09
14 8 0.35
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (12 bp):
AATAAATATTCA
Found at i:86348656 original size:13 final size:14
Alignment explanation
Indices: 86348633--86348661 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86348623 AAGTTACAGT
86348633 AAGAGAAAAAAGAA
1 AAGAGAAAAAAGAA
86348647 AAGA-AAAAAAGAA
1 AAGAGAAAAAAGAA
86348660 AA
1 AA
86348662 CAATGGGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAGAGAAAAAAGAA
Found at i:86356728 original size:2 final size:2
Alignment explanation
Indices: 86356721--86356747 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86356711 AATCTTAAGG
86356721 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
86356748 CACAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.