Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 298 of 427
Found at i:86372660 original size:25 final size:24
Alignment explanation
Indices: 86372614--86372661 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
86372604 AAGTTATAAA
86372614 TAAAAAATATCTCTAGAAAATTTC
1 TAAAAAATATCTCTAGAAAATTTC
* * *
86372638 TAAAATAATTTCTTTAGAGAATTT
1 TAAAA-AATATCTCTAGAAAATTT
86372662 TCTCTCTACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (24 bp):
TAAAAAATATCTCTAGAAAATTTC
Found at i:86373709 original size:45 final size:45
Alignment explanation
Indices: 86373645--86373736 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
86373635 GGATTCAATC
86373645 CACATGAAGTATCATGATTGAAAACTCCCTATTGTATACTCTTTA
1 CACATGAAGTATCATGATTGAAAACTCCCTATTGTATACTCTTTA
86373690 CACATGAAGTATCATGATTGAAAACTCCCTATTGTATACTCTTTA
1 CACATGAAGTATCATGATTGAAAACTCCCTATTGTATACTCTTTA
86373735 CA
1 CA
86373737 AAAGCAATTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.35
Consensus pattern (45 bp):
CACATGAAGTATCATGATTGAAAACTCCCTATTGTATACTCTTTA
Found at i:86379987 original size:13 final size:13
Alignment explanation
Indices: 86379969--86379993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86379959 TTTGTTGCTT
86379969 TTTTCAATCTAAG
1 TTTTCAATCTAAG
86379982 TTTTCAATCTAA
1 TTTTCAATCTAA
86379994 ATTTGGTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (13 bp):
TTTTCAATCTAAG
Found at i:86397860 original size:22 final size:22
Alignment explanation
Indices: 86397817--86397860 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
86397807 AAATATCTAA
**
86397817 ATATTATGTTTTTTAAAAAATT
1 ATATTATGTTTTCGAAAAAATT
86397839 ATATTAT-TTTTCGAAAATAATT
1 ATATTATGTTTTCGAAAA-AATT
86397861 TTTAGTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
ATATTATGTTTTCGAAAAAATT
Found at i:86397999 original size:13 final size:13
Alignment explanation
Indices: 86397981--86398011 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
86397971 ATTAATTATT
86397981 ATAAAAAATAAAA
1 ATAAAAAATAAAA
86397994 ATAAAAAATAAAA
1 ATAAAAAATAAAA
86398007 A-AAAA
1 ATAAAA
86398012 CATGGGTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
ATAAAAAATAAAA
Found at i:86398598 original size:24 final size:25
Alignment explanation
Indices: 86398566--86398612 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
86398556 ATATTCGTAA
*
86398566 TTAAATTAAAA-TTAATCTTATTCT
1 TTAAATTAAAATTTAATATTATTCT
86398590 TTAAATTAAAATTTAATATTATT
1 TTAAATTAAAATTTAATATTATT
86398613 TTGATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
TTAAATTAAAATTTAATATTATTCT
Found at i:86403773 original size:13 final size:13
Alignment explanation
Indices: 86403755--86403779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86403745 GGGTCGCACG
86403755 GCCAAGCCACACC
1 GCCAAGCCACACC
86403768 GCCAAGCCACAC
1 GCCAAGCCACAC
86403780 GCCCGTGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.52, G:0.16, T:0.00
Consensus pattern (13 bp):
GCCAAGCCACACC
Found at i:86407779 original size:22 final size:22
Alignment explanation
Indices: 86407754--86407801 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
86407744 GTGTAAGGTG
86407754 ATAATA-ATATACAAATGAAATA
1 ATAATATATATACAAATGAAA-A
* *
86407776 ATAATATCTATACAATTGAAAA
1 ATAATATATATACAAATGAAAA
86407798 ATAA
1 ATAA
86407802 ATAAATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.29
Consensus pattern (22 bp):
ATAATATATATACAAATGAAAA
Found at i:86409159 original size:44 final size:43
Alignment explanation
Indices: 86409110--86409201 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 43
86409100 TGTTCAGGGA
86409110 TACTTCGACCTT-GAGTCAATGAGGCA-TTATAAGTGTCGTACTGT
1 TACTTCGA-CTTCGAGTCAATGAGGCACTTAT--GTGTCGTACTGT
* *
86409154 TACTTCGACTTCGAGTCTATGAGGCACCTTGTGTGTCGTACTGT
1 TACTTCGACTTCGAGTCAATGAGGCA-CTTATGTGTCGTACTGT
86409198 TACT
1 TACT
86409202 ATTACTTCAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
43 3 0.07
44 37 0.86
46 3 0.07
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (43 bp):
TACTTCGACTTCGAGTCAATGAGGCACTTATGTGTCGTACTGT
Found at i:86414152 original size:12 final size:12
Alignment explanation
Indices: 86414135--86414159 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86414125 CCCAACTCTC
86414135 CCTAAAATCACT
1 CCTAAAATCACT
86414147 CCTAAAATCACT
1 CCTAAAATCACT
86414159 C
1 C
86414160 AATCAAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.24
Consensus pattern (12 bp):
CCTAAAATCACT
Found at i:86416166 original size:24 final size:24
Alignment explanation
Indices: 86416139--86416195 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
86416129 TACAAAGTAG
*
86416139 TTTAAACTACATGATATATGAA-AA
1 TTTAAAATACATGATAT-TGAAGAA
* *
86416163 TTTAAAATCCATGATATTTAAGAA
1 TTTAAAATACATGATATTGAAGAA
86416187 TTTAAAATA
1 TTTAAAATA
86416196 AATAATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.37
Consensus pattern (24 bp):
TTTAAAATACATGATATTGAAGAA
Found at i:86421731 original size:29 final size:29
Alignment explanation
Indices: 86421689--86421770 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
86421679 ATTATTTTTT
86421689 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
86421718 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
86421747 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
86421771 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:86429637 original size:29 final size:29
Alignment explanation
Indices: 86429595--86429676 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
86429585 ATTATTTTTT
86429595 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
86429624 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
86429653 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
86429677 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:86436250 original size:11 final size:11
Alignment explanation
Indices: 86436236--86436302 Score: 59
Period size: 11 Copynumber: 6.1 Consensus size: 11
86436226 CAAATGTTTC
86436236 TAAAATAATAA
1 TAAAATAATAA
86436247 TAAAATTAATAA
1 TAAAA-TAATAA
86436259 TAAAATAA-AA
1 TAAAATAATAA
* *
86436269 TTATATAAT-A
1 TAAAATAATAA
*
86436279 TCTAAATAATAA
1 T-AAAATAATAA
86436291 TAACAA-AATAA
1 TAA-AATAATAA
86436302 T
1 T
86436303 TGCAAAACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
10 10 0.21
11 22 0.47
12 15 0.32
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:86436258 original size:12 final size:12
Alignment explanation
Indices: 86436236--86436264 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
86436226 CAAATGTTTC
86436236 TAAAA-TAATAA
1 TAAAATTAATAA
86436247 TAAAATTAATAA
1 TAAAATTAATAA
86436259 TAAAAT
1 TAAAAT
86436265 AAAATTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAAATTAATAA
Found at i:86436276 original size:18 final size:18
Alignment explanation
Indices: 86436239--86436278 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
86436229 ATGTTTCTAA
86436239 AATAATAATAAAATTAAT
1 AATAATAATAAAATTAAT
86436257 AATAA-AATAAAATTATAT
1 AATAATAATAAAATTA-AT
86436275 AATA
1 AATA
86436279 TCTAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AATAATAATAAAATTAAT
Found at i:86436292 original size:14 final size:14
Alignment explanation
Indices: 86436237--86436302 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
86436227 AAATGTTTCT
86436237 AAAATAATAATAA-
1 AAAATAATAATAAC
*
86436250 AATTAATAATAA-AAT
1 AA--AATAATAATAAC
*
86436265 AAAATTATATAATATC
1 AAAA-TA-ATAATAAC
*
86436281 TAAATAATAATAAC
1 AAAATAATAATAAC
86436295 AAAATAAT
1 AAAATAAT
86436303 TGCAAAACAA
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
13 4 0.10
14 18 0.43
15 16 0.38
16 4 0.10
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAATAATAATAAC
Found at i:86436293 original size:17 final size:16
Alignment explanation
Indices: 86436238--86436293 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 16
86436228 AATGTTTCTA
*
86436238 AAATAATAATAAAATT
1 AAATAATAATAATATT
86436254 -AATAATAA-AATA--
1 AAATAATAATAATATT
*
86436266 AAATTAT-ATAATATCT
1 AAATAATAATAATAT-T
86436282 AAATAATAATAA
1 AAATAATAATAA
86436294 CAAAATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 11
0.69 0.07 0.24
Matches are distributed among these distances:
12 1 0.03
13 9 0.29
14 3 0.10
15 8 0.26
16 6 0.19
17 4 0.13
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (16 bp):
AAATAATAATAATATT
Found at i:86440866 original size:35 final size:34
Alignment explanation
Indices: 86440827--86440955 Score: 143
Period size: 35 Copynumber: 3.7 Consensus size: 34
86440817 GTCAAATGCG
*
86440827 ACCTTAAAAAGGTTGAGATAGACCTTTCTAAGGCA
1 ACCTTAAAAAGGTTGAGATAGACC-GTCTAAGGCA
* * *
86440862 ACCTTAAAAAGGTT-AGGATAAACCCGTATAAGTCA
1 ACCTTAAAAAGGTTGA-GATAGA-CCGTCTAAGGCA
* *
86440897 ACCTTAAAAATGTTGGGATAGACACGTCTAAGGCA
1 ACCTTAAAAAGGTTGAGATAGAC-CGTCTAAGGCA
* *
86440932 ACCTTAAAAATGTTGGGATAGACC
1 ACCTTAAAAAGGTTGAGATAGACC
86440956 ATTTAAGGGA
Statistics
Matches: 81, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
34 3 0.04
35 76 0.94
36 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (34 bp):
ACCTTAAAAAGGTTGAGATAGACCGTCTAAGGCA
Found at i:86444612 original size:15 final size:15
Alignment explanation
Indices: 86444564--86444647 Score: 55
Period size: 15 Copynumber: 5.7 Consensus size: 15
86444554 CAAAGATAAT
*
86444564 AAGAAAGCC-GAATA
1 AAGAAACCCAGAATA
**
86444578 AAGAAATACA-AGATA
1 AAGAAACCCAGA-ATA
* *
86444593 GAGAAACCCGGAATA
1 AAGAAACCCAGAATA
*
86444608 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
* * * *
86444623 AAGAGATCTAGGATA
1 AAGAAACCCAGAATA
86444638 AAGAAACCCA
1 AAGAAACCCA
86444648 AGATACGATA
Statistics
Matches: 52, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
14 8 0.15
15 43 0.83
16 1 0.02
ACGTcount: A:0.56, C:0.14, G:0.19, T:0.11
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:86451990 original size:40 final size:39
Alignment explanation
Indices: 86451927--86452012 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
86451917 TAACGACTTA
**
86451927 TCGGCTAAAATGACACTTAGTGTGCGGTTTGAAATAGCT
1 TCGGCTAAAATGACACTTAGTGTGCAATTTGAAATAGCT
* * * *
86451966 TCGGTTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGACACTTAGTGTGCAATTTGAAATAGCT
86452006 TCGGCTA
1 TCGGCTA
86452013 TATATATATG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 9 0.23
40 30 0.77
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTGCAATTTGAAATAGCT
Found at i:86452095 original size:28 final size:29
Alignment explanation
Indices: 86452022--86452097 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 29
86452012 ATATATATAT
* *
86452022 GAATGGCACTTAGTGTGC-AAAGTATCGA
1 GAATGGCACTTAGTGTGCGAAAGCATCCA
*
86452050 GAATGGCACTTAATGTGCGAAA-CATCCA
1 GAATGGCACTTAGTGTGCGAAAGCATCCA
* *
86452078 GAATAGCACTTAGCGTGCGA
1 GAATGGCACTTAGTGTGCGA
86452098 GGTATCGAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 38 0.93
29 3 0.07
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (29 bp):
GAATGGCACTTAGTGTGCGAAAGCATCCA
Found at i:86452123 original size:56 final size:56
Alignment explanation
Indices: 86452022--86452131 Score: 139
Period size: 56 Copynumber: 2.0 Consensus size: 56
86452012 ATATATATAT
* * *
86452022 GAATGGCACTTAGTGTGCAAAGTATCGAGAATGGCACTTAATGTGCGAAACATCCA
1 GAATAGCACTTAGCGTGCAAAGTATCGAGAATGGCACATAATGTGCGAAACATCCA
* * * * * *
86452078 GAATAGCACTTAGCGTGCGAGGTATCGAGTATGGTACATAGTGTGCGAGACATC
1 GAATAGCACTTAGCGTGCAAAGTATCGAGAATGGCACATAATGTGCGAAACATC
86452132 GAAGATGCAA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (56 bp):
GAATAGCACTTAGCGTGCAAAGTATCGAGAATGGCACATAATGTGCGAAACATCCA
Found at i:86465105 original size:18 final size:19
Alignment explanation
Indices: 86465071--86465108 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
86465061 ATAGAGAGAG
86465071 AAAAGAACGAAAGGAGAAA
1 AAAAGAACGAAAGGAGAAA
86465090 AAAAGAA-G-AAGAGAGAAA
1 AAAAGAACGAAAG-GAGAAA
86465108 A
1 A
86465109 TGGAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 8 0.44
19 7 0.39
ACGTcount: A:0.71, C:0.03, G:0.26, T:0.00
Consensus pattern (19 bp):
AAAAGAACGAAAGGAGAAA
Found at i:86467462 original size:11 final size:11
Alignment explanation
Indices: 86467447--86467486 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
86467437 GTTTTCTCCA
86467447 TATTTTGCTAT
1 TATTTTGCTAT
* *
86467458 AATTTTACTAT
1 TATTTTGCTAT
*
86467469 TATGTTGCTAT
1 TATTTTGCTAT
86467480 TATTTTG
1 TATTTTG
86467487 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.07, G:0.10, T:0.60
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:86467724 original size:10 final size:11
Alignment explanation
Indices: 86467708--86467740 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
86467698 TATATATATG
86467708 TAAAAATAATA
1 TAAAAATAATA
86467719 -AAAAATAATA
1 TAAAAATAATA
86467729 TAAAAATTAATA
1 TAAAAA-TAATA
86467741 CGAGCGGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 5 0.25
12 5 0.25
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:86469276 original size:33 final size:33
Alignment explanation
Indices: 86469208--86469295 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 33
86469198 TATATGCGTG
* * *
86469208 AGACCATAGCTGGGTTATGACATCCTGAAGATA
1 AGACCATAGTTGGGTTATGGCATCATGAAGATA
86469241 AGACCATAGTTGGGTTATGGCA-CTATGAATG-TA
1 AGACCATAGTTGGGTTATGGCATC-ATGAA-GATA
* * *
86469274 AGACCATGGTAGGGTAATGGCA
1 AGACCATAGTTGGGTTATGGCA
86469296 ATACATGTGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
32 1 0.02
33 45 0.96
34 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (33 bp):
AGACCATAGTTGGGTTATGGCATCATGAAGATA
Found at i:86472824 original size:23 final size:23
Alignment explanation
Indices: 86472771--86472883 Score: 108
Period size: 23 Copynumber: 4.9 Consensus size: 23
86472761 AAGCTCTTCA
*
86472771 TGAGCTAATAAACAGTAAGCTCTAT
1 TGAGCTGA-AAACAGTAAGCTC-AT
*
86472796 TGAGCTGAAAACGGTAAGCTCAT
1 TGAGCTGAAAACAGTAAGCTCAT
*
86472819 TGAGCTG--AACAGTAAGCTCTTT
1 TGAGCTGAAAACAGTAAGCTC-AT
* * *
86472841 TGAGCTG-AATCGGTAAGCTCCAA
1 TGAGCTGAAAACAGTAAGCT-CAT
86472864 TGAGCT-AAAACAGTAAGCTC
1 TGAGCTGAAAACAGTAAGCTC
86472884 TTACTAGCTA
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
21 11 0.15
22 9 0.12
23 34 0.46
24 13 0.18
25 7 0.09
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (23 bp):
TGAGCTGAAAACAGTAAGCTCAT
Found at i:86472838 original size:45 final size:46
Alignment explanation
Indices: 86472757--86472884 Score: 154
Period size: 45 Copynumber: 2.7 Consensus size: 46
86472747 AAGACATGGT
86472757 CGGTAAGCTCTTC-ATGAGCTAATAAACAGTAAGCTCTATTGAGCTGAAAA
1 CGGTAAGCTC--CAATGAGCT-A-AAACAGTAAGCTCTATTGAGCTG-AAA
* * * *
86472807 CGGTAAGCT-CATTGAGCT-GAACAGTAAGCTCTTTTGAGCTGAAT
1 CGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCTATTGAGCTGAAA
86472851 CGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCT
1 CGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCT
86472885 TACTAGCTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
44 11 0.16
45 29 0.42
46 13 0.19
47 1 0.01
48 6 0.09
50 9 0.13
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (46 bp):
CGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCTATTGAGCTGAAA
Found at i:86473597 original size:26 final size:26
Alignment explanation
Indices: 86473568--86473675 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
86473558 TGATACAAAT
86473568 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
86473594 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86473620 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86473646 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86473672 TGAT
1 TGAT
86473676 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86479250 original size:21 final size:19
Alignment explanation
Indices: 86479209--86479255 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
86479199 ACTTCATGTT
86479209 ATTTTTTTTTAATTTTAAA
1 ATTTTTTTTTAATTTTAAA
86479228 ATTTATTTTTATAACTTTT-AA
1 ATTT-TTTTT-TAA-TTTTAAA
86479249 ATTTTTT
1 ATTTTTT
86479256 ATTGACGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.16
20 8 0.32
21 9 0.36
22 4 0.16
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTTTAATTTTAAA
Found at i:86482764 original size:24 final size:24
Alignment explanation
Indices: 86482732--86482783 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
86482722 AATCAAAGTC
* *
86482732 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
86482756 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
86482780 AAAT
1 AAAT
86482784 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:86483891 original size:39 final size:39
Alignment explanation
Indices: 86483846--86483973 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
86483836 GGTCTTTAAC
** *
86483846 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * * *
86483885 CTGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
86483924 CCGGATATTTTTCCAGCATATAGCCTGTGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
86483963 CCGGATATTTT
1 CCGGATATTTT
86483974 CAATCTCATA
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:86485642 original size:2 final size:2
Alignment explanation
Indices: 86485635--86485672 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
86485625 ACATTCGGCA
86485635 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86485673 TAATGACTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86487796 original size:21 final size:21
Alignment explanation
Indices: 86487762--86487818 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
86487752 TTATAAAACG
* *
86487762 TCTTAAAACTATAAATCCTAAA
1 TCTT-AAACCATAAACCCTAAA
86487784 TCTTAAACCATAAACCCTAAA
1 TCTTAAACCATAAACCCTAAA
**
86487805 TCCAAAACCATAAA
1 TCTTAAACCATAAA
86487819 ACCTTAAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.25
Consensus pattern (21 bp):
TCTTAAACCATAAACCCTAAA
Found at i:86487905 original size:2 final size:2
Alignment explanation
Indices: 86487898--86487923 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
86487888 TTTCATATGG
86487898 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
86487924 TAATGTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86488190 original size:3 final size:3
Alignment explanation
Indices: 86488182--86488240 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
86488172 AATAGTAAAC
86488182 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
86488230 AAT AAA AAT AA
1 AAT AAT AAT AA
86488241 AAGAGAAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:86491442 original size:2 final size:2
Alignment explanation
Indices: 86491435--86491466 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
86491425 AAGACAATAA
86491435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86491467 TACCTTTCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86492409 original size:28 final size:28
Alignment explanation
Indices: 86492350--86492434 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 28
86492340 TAATTGGATT
* * *
86492350 AATTTATATAAATATTATTTAATTAATATA
1 AATTAATAT-AAT-TTATTTAAATATTATA
* *
86492380 AATTGGAT-TAATTTATTTAAATATTTTA
1 AATT-AATATAATTTATTTAAATATTATA
86492408 AATTAATATAATTT-TTATAAATATTAT
1 AATTAATATAATTTATT-TAAATATTAT
86492435 TTAATTAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
27 4 0.09
28 32 0.70
29 3 0.07
30 5 0.11
31 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
AATTAATATAATTTATTTAAATATTATA
Found at i:86492452 original size:31 final size:27
Alignment explanation
Indices: 86492389--86492455 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 27
86492379 AAATTGGATT
*
86492389 AATTTATTTAAATATTTTAAATTAATAT
1 AATTT-TTTAAATATTTTAAATTAATAA
*
86492417 AATTTTTATAAATATTATTTAATTAAAATAA
1 AATTTTT-TAAATATT-TTAAATT--AATAA
86492448 AATTTTTT
1 AATTTTTT
86492456 CCATGTGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 2 0.06
28 13 0.39
29 6 0.18
30 1 0.03
31 11 0.33
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
AATTTTTTAAATATTTTAAATTAATAA
Found at i:86492731 original size:9 final size:9
Alignment explanation
Indices: 86492713--86492996 Score: 293
Period size: 9 Copynumber: 32.7 Consensus size: 9
86492703 TATATACTTG
*
86492713 AACTTCCAT
1 AACTTACAT
*
86492722 AACTCACAT
1 AACTTACAT
86492731 AACTTACAT
1 AACTTACAT
* *
86492740 AACCTATAT
1 AACTTACAT
86492749 AACTTACAT
1 AACTTACAT
*
86492758 AACTCACAT
1 AACTTACAT
*
86492767 AACTTATAT
1 AACTTACAT
*
86492776 AACTTATAT
1 AACTTACAT
86492785 AACTTACAT
1 AACTTACAT
86492794 AACTTACAT
1 AACTTACAT
*
86492803 AACTCACAT
1 AACTTACAT
86492812 AAC-T---T
1 AACTTACAT
86492817 -ACTTACAT
1 AACTTACAT
*
86492825 AACTCACAT
1 AACTTACAT
*
86492834 AACTTACAC
1 AACTTACAT
*
86492843 AACTTATAT
1 AACTTACAT
86492852 AACTTACAT
1 AACTTACAT
*
86492861 AACTTGCAT
1 AACTTACAT
*
86492870 AACTCACAT
1 AACTTACAT
86492879 AACTTACAT
1 AACTTACAT
86492888 AACTT--AT
1 AACTTACAT
*
86492895 -ATTTACAT
1 AACTTACAT
86492903 AACTTACAT
1 AACTTACAT
*
86492912 AACTCACAT
1 AACTTACAT
*
86492921 AACTTACAG
1 AACTTACAT
86492930 AACTTACAT
1 AACTTACAT
*
86492939 AATTTACAT
1 AACTTACAT
86492948 AACTTACAT
1 AACTTACAT
86492957 AA--TACAT
1 AACTTACAT
* *
86492964 AA-ATATAT
1 AACTTACAT
* *
86492972 ATCATATCAT
1 AACTTA-CAT
86492982 AACTTACAT
1 AACTTACAT
86492991 AACTTA
1 AACTTA
86492997 ATTAGAGTTA
Statistics
Matches: 228, Mismatches: 36, Indels: 22
0.80 0.13 0.08
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 3 0.01
7 9 0.04
8 8 0.04
9 198 0.87
10 6 0.03
ACGTcount: A:0.44, C:0.22, G:0.01, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:86492823 original size:22 final size:22
Alignment explanation
Indices: 86492795--86492840 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
86492785 AACTTACATA
86492795 ACTTACATAACTCACATAACTT
1 ACTTACATAACTCACATAACTT
86492817 ACTTACATAACTCACATAACTT
1 ACTTACATAACTCACATAACTT
86492839 AC
1 AC
86492841 ACAACTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.28, G:0.00, T:0.30
Consensus pattern (22 bp):
ACTTACATAACTCACATAACTT
Found at i:86496064 original size:42 final size:42
Alignment explanation
Indices: 86496000--86496102 Score: 170
Period size: 42 Copynumber: 2.4 Consensus size: 42
86495990 TTATTTGAAA
*
86496000 AAAACGCCGCTAAAGGTTGCGACCTTTAGCGACGCTTATCCC
1 AAAACGCCGCTAAAGGTCGCGACCTTTAGCGACGCTTATCCC
* *
86496042 AAAACGCCGCTAAAGGTCGCGACCTTTAGCGGCGCTTTTCCC
1 AAAACGCCGCTAAAGGTCGCGACCTTTAGCGACGCTTATCCC
86496084 ACAAACGCCGCTAAAGGTC
1 A-AAACGCCGCTAAAGGTC
86496103 ATGAAATTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 40 0.70
43 17 0.30
ACGTcount: A:0.26, C:0.32, G:0.22, T:0.19
Consensus pattern (42 bp):
AAAACGCCGCTAAAGGTCGCGACCTTTAGCGACGCTTATCCC
Found at i:86496385 original size:18 final size:19
Alignment explanation
Indices: 86496348--86496388 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
86496338 ATTTAGAATC
86496348 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
86496367 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
86496385 AAAA
1 AAAA
86496389 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:86496390 original size:31 final size:31
Alignment explanation
Indices: 86496314--86496387 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
86496304 TCAAGTTATC
*
86496314 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
86496346 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
86496376 TTAAATATAAAA
1 TTAAATATAAAA
86496388 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:86502041 original size:7 final size:7
Alignment explanation
Indices: 86502040--86502109 Score: 61
Period size: 7 Copynumber: 9.7 Consensus size: 7
86502030 ATTTTAATTT
*
86502040 TTTTTTA
1 TTTTTAA
*
86502047 TTTTTTA
1 TTTTTAA
86502054 TTTTTAAA
1 TTTTT-AA
*
86502062 TTTTAAA
1 TTTTTAA
*
86502069 TTTTAAA
1 TTTTTAA
86502076 TTTTTAAA
1 TTTTT-AA
86502084 TTTTTAAA
1 TTTTT-AA
86502092 TTTTTAA
1 TTTTTAA
*
86502099 ATTTT-A
1 TTTTTAA
86502105 TTTTT
1 TTTTT
86502110 TGAGTTTATT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
6 5 0.09
7 31 0.55
8 20 0.36
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTTAA
Found at i:86502064 original size:8 final size:8
Alignment explanation
Indices: 86502053--86502103 Score: 88
Period size: 8 Copynumber: 6.6 Consensus size: 8
86502043 TTTATTTTTT
86502053 ATTTTTAA
1 ATTTTTAA
86502061 A-TTTTAA
1 ATTTTTAA
86502068 A-TTTTAA
1 ATTTTTAA
86502075 ATTTTTAA
1 ATTTTTAA
86502083 ATTTTTAA
1 ATTTTTAA
86502091 ATTTTTAA
1 ATTTTTAA
86502099 ATTTT
1 ATTTT
86502104 ATTTTTTGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
7 14 0.33
8 28 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
ATTTTTAA
Found at i:86502064 original size:15 final size:15
Alignment explanation
Indices: 86502040--86502103 Score: 76
Period size: 15 Copynumber: 4.3 Consensus size: 15
86502030 ATTTTAATTT
* *
86502040 TTTTTTATTTTT-TA
1 TTTTTAATTTTTAAA
*
86502054 TTTTTAAATTTTAAA
1 TTTTTAATTTTTAAA
*
86502069 TTTTAAATTTTTAAA
1 TTTTTAATTTTTAAA
86502084 TTTTTAAATTTTTAAA
1 TTTTT-AATTTTTAAA
86502100 TTTT
1 TTTT
86502104 ATTTTTTGAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
14 10 0.24
15 18 0.43
16 14 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTAATTTTTAAA
Found at i:86502735 original size:14 final size:15
Alignment explanation
Indices: 86502706--86502739 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
86502696 ATACCCATGG
*
86502706 CCATTAAACCTAAAA
1 CCATAAAACCTAAAA
86502721 CCATAAAACCT-AAA
1 CCATAAAACCTAAAA
86502735 CCATA
1 CCATA
86502740 GACCTTAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (15 bp):
CCATAAAACCTAAAA
Found at i:86502748 original size:14 final size:15
Alignment explanation
Indices: 86502706--86502755 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 15
86502696 ATACCCATGG
* *
86502706 CCATTAAACCTAAAA
1 CCATAAAACCTTAAA
86502721 CCATAAAACC-TAAA
1 CCATAAAACCTTAAA
*
86502735 CCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
86502749 CCTTAAA
1 CCATAAA
86502756 TATTAAACCG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
13 4 0.14
14 14 0.50
15 10 0.36
ACGTcount: A:0.50, C:0.28, G:0.02, T:0.20
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:86503224 original size:81 final size:83
Alignment explanation
Indices: 86502999--86503284 Score: 411
Period size: 81 Copynumber: 3.5 Consensus size: 83
86502989 GGGGTTATAT
** * * * **
86502999 GACTTTTAGC-GTCGCTTTT-CGTAAAGCGCTGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCA
1 GACTTTTAGCTG-CGCTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCA
86503062 AAAGCGCCGCTATTGCTCC
65 AAAGCGCCGCTATTGCTCC
* *
86503081 GAATTTTAGCTGCGTTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
1 GACTTTTAGCTGCGCTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
86503146 AAGCGCCGCTATTGCTCC
66 AAGCGCCGCTATTGCTCC
*
86503164 GACTTTTAGC-GCG-TTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGGGGCGTTTTACCAA
1 GACTTTTAGCTGCGCTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
* *
86503227 AAACGCCGCTATTGCTTC
66 AAGCGCCGCTATTGCTCC
*
86503245 GACTTTTAGCTGCG-TTTTACCAAAAACGCCGCTATTGCTC
1 GACTTTTAGCTGCGCTTTTACCAAAAGCGCCGCTATTGCTC
86503285 TGTGTTTTAC
Statistics
Matches: 187, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
81 75 0.40
82 46 0.25
83 66 0.35
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (83 bp):
GACTTTTAGCTGCGCTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAA
AAGCGCCGCTATTGCTCC
Found at i:86503265 original size:122 final size:124
Alignment explanation
Indices: 86503043--86503284 Score: 407
Period size: 122 Copynumber: 2.0 Consensus size: 124
86503033 ATGCTCTGGT
* *
86503043 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAATTTTAGCTGCGTTTTTACCAAAAG
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAATTTTAGCGGCGTTTTTACCAAAAA
*
86503108 CGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAC
66 CGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCCGAC
* *
86503167 TTTTAGC-GCGTTTTACCAAAAGCGCCGCTATTGCTCCGACTTTTAGGGGCG-TTTTACCAAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAATTTTAGCGGCGTTTTTACCAAAAA
* *
86503230 CGCCGCTATTGCTTCGACTTTTAGCTGCGTTTTACCAAAAACGCCGCTATTGCTC
66 CGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTC
86503285 TGTGTTTTAC
Statistics
Matches: 111, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
122 63 0.57
123 41 0.37
124 7 0.06
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (124 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCCGAATTTTAGCGGCGTTTTTACCAAAAA
CGCCGCTATTGCTCCGACTTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCCGAC
Found at i:86503293 original size:41 final size:41
Alignment explanation
Indices: 86502999--86503284 Score: 405
Period size: 41 Copynumber: 7.0 Consensus size: 41
86502989 GGGGTTATAT
* ** * * *
86502999 GACTTTTAGCGTCGCTTTT-CGTAAAGCGCTGCTAATGCTCT
1 GACTTTTAGCGGCG-TTTTACCAAAAGCGCCGCTATTGCTCC
**
86503040 GGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
* *
86503081 GAATTTTAGCTGCGTTTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCG-TTTTACCAAAAGCGCCGCTATTGCTCC
86503123 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
86503164 GACTTTTAGC-GCGTTTTACCAAAAGCGCCGCTATTGCTCC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
* * *
86503204 GACTTTTAGGGGCGTTTTACCAAAAACGCCGCTATTGCTTC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
* *
86503245 GACTTTTAGCTGCGTTTTACCAAAAACGCCGCTATTGCTC
1 GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
86503285 TGTGTTTTAC
Statistics
Matches: 223, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
40 43 0.19
41 141 0.63
42 39 0.17
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (41 bp):
GACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCC
Found at i:86503332 original size:12 final size:12
Alignment explanation
Indices: 86503317--86503343 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86503307 GTTTTTTGAT
86503317 AAAACGCCGCTA
1 AAAACGCCGCTA
86503329 AAAACGCCGCTA
1 AAAACGCCGCTA
86503341 AAA
1 AAA
86503344 CCCTATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:86507054 original size:21 final size:21
Alignment explanation
Indices: 86507029--86507069 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
86507019 TAGAGCGGAG
*
86507029 GCAGCAGAGAGGGAGGCAGCT
1 GCAGCAGAGAGAGAGGCAGCT
*
86507050 GCAGCAGCGAGAGAGGCAGC
1 GCAGCAGAGAGAGAGGCAGC
86507070 GATAATAGCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.46, T:0.02
Consensus pattern (21 bp):
GCAGCAGAGAGAGAGGCAGCT
Found at i:86508878 original size:40 final size:39
Alignment explanation
Indices: 86508817--86508989 Score: 186
Period size: 40 Copynumber: 4.4 Consensus size: 39
86508807 CTTCGGAACT
* ** ** * *
86508817 TTAAGCCCGGATATATTTCCAGCACGTAACCTGCTAACC
1 TTAAGTCCGGATATAACTCCAGCATATAGCCTGCTGACC
* *
86508856 TTAAGTCCGGATTATAACTCCAGCATATAGCATGCGGACC
1 TTAAGTCCGGA-TATAACTCCAGCATATAGCCTGCTGACC
**
86508896 TTAAGTCCGGATATATTTCCAGCATATAGCCTG-TGGACC
1 TTAAGTCCGGATATAACTCCAGCATATAGCCTGCT-GACC
* *
86508935 TTAAGTCCGGATTATAACTCCAGCATATAGCTTGCGGACC
1 TTAAGTCCGGA-TATAACTCCAGCATATAGCCTGCTGACC
*
86508975 TTAAGTCTGGATATA
1 TTAAGTCCGGATATA
86508990 TTTCCAAATA
Statistics
Matches: 112, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 48 0.43
40 64 0.57
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (39 bp):
TTAAGTCCGGATATAACTCCAGCATATAGCCTGCTGACC
Found at i:86508917 original size:79 final size:79
Alignment explanation
Indices: 86508817--86508995 Score: 279
Period size: 79 Copynumber: 2.3 Consensus size: 79
86508807 CTTCGGAACT
* *
86508817 TTAAGCCCGGATATATTTCCAGCACGTAACCTGCT-AACCTTAAGTCCGGATTATAACTCCAGCA
1 TTAAGTCCGGATATATTTCCAGCACATAACCTG-TGAACCTTAAGTCCGGATTATAACTCCAGCA
86508881 TATAGCATGCGGACC
65 TATAGCATGCGGACC
* * *
86508896 TTAAGTCCGGATATATTTCCAGCATATAGCCTGTGGACCTTAAGTCCGGATTATAACTCCAGCAT
1 TTAAGTCCGGATATATTTCCAGCACATAACCTGTGAACCTTAAGTCCGGATTATAACTCCAGCAT
*
86508961 ATAGCTTGCGGACC
66 ATAGCATGCGGACC
*
86508975 TTAAGTCTGGATATATTTCCA
1 TTAAGTCCGGATATATTTCCA
86508996 AATATCATGC
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
78 1 0.01
79 91 0.99
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (79 bp):
TTAAGTCCGGATATATTTCCAGCACATAACCTGTGAACCTTAAGTCCGGATTATAACTCCAGCAT
ATAGCATGCGGACC
Found at i:86509572 original size:2 final size:2
Alignment explanation
Indices: 86509565--86509593 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
86509555 TTAATATAAA
86509565 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86509594 TAAACAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86509603 original size:21 final size:21
Alignment explanation
Indices: 86509557--86509603 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
86509547 ATAAAATGTT
*
86509557 AATATAAAATATATATATATA
1 AATATAAAATATATATATAAA
* *
86509578 TATATATAATATATAT-TAAA
1 AATATAAAATATATATATAAA
86509598 CAATAT
1 -AATAT
86509604 CATGGCCGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AATATAAAATATATATATAAA
Found at i:86515589 original size:39 final size:37
Alignment explanation
Indices: 86515541--86515763 Score: 171
Period size: 39 Copynumber: 5.7 Consensus size: 37
86515531 AAACCCTTCG
*
86515541 GAACTTTAAG-CCTGGATATATTTCCAGCACGTA-ACCTGT
1 GAACCTTAAGTCC-GGATATATTTCCAGCA--TATACCT-T
** *
86515580 GAACCTTAAGTCCGGATTATAACTCCAGCATATAGCTT
1 GAACCTTAAGTCCGGA-TATATTTCCAGCATATACCTT
*
86515618 GCAGACCTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
1 G-A-ACCTTAAGTCCGGATATATTTCCAGCATATA-CCT-T
* * * * *
86515659 GGACTTTAAGTCCGGATATATTTCTAGCATATAGTCTGC
1 GAACCTTAAGTCCGGATATATTTCCAGCATATA-CCT-T
* ** *
86515698 GGACCTTAAGTCCGGATTATAACTCCAGCATATAGCCTAC
1 GAACCTTAAGTCCGGA-TATATTTCCAGCATATA-CCT-T
*
86515738 GGACCTTAAGTCCGGATATATTTCCA
1 GAACCTTAAGTCCGGATATATTTCCA
86515764 AATATCATGC
Statistics
Matches: 156, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 4 0.03
39 88 0.56
40 63 0.40
41 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (37 bp):
GAACCTTAAGTCCGGATATATTTCCAGCATATACCTT
Found at i:86515725 original size:79 final size:78
Alignment explanation
Indices: 86515582--86515763 Score: 258
Period size: 79 Copynumber: 2.3 Consensus size: 78
86515572 TAACCTGTGA
** **
86515582 ACCTTAAGTCCGGATTATAACTCCAGCATATAGCTTGCAGACCTTAAGTCCGGATATATTTCCAG
1 ACCTTAAGTCCGGA-TATATTTCCAGCATATAGCTTGCAGACCTTAAGTCCGGATATAACTCCAG
*
86515647 CATATAGCCTGCGG
65 CATATAGCCTACGG
* * *
86515661 ACTTTAAGTCCGGATATATTTCTAGCATATAG-TCTGCGGACCTTAAGTCCGGATTATAACTCCA
1 ACCTTAAGTCCGGATATATTTCCAGCATATAGCT-TGCAGACCTTAAGTCCGGA-TATAACTCCA
86515725 GCATATAGCCTACGG
64 GCATATAGCCTACGG
86515740 ACCTTAAGTCCGGATATATTTCCA
1 ACCTTAAGTCCGGATATATTTCCA
86515764 AATATCATGC
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
77 1 0.01
78 33 0.36
79 57 0.63
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (78 bp):
ACCTTAAGTCCGGATATATTTCCAGCATATAGCTTGCAGACCTTAAGTCCGGATATAACTCCAGC
ATATAGCCTACGG
Found at i:86523541 original size:54 final size:54
Alignment explanation
Indices: 86523455--86523771 Score: 303
Period size: 55 Copynumber: 5.9 Consensus size: 54
86523445 ATTAGGGTTT
* * *
86523455 AAGGATACCAAGTAAGACCATGGCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTTACAAGGC
* * * * ** *
86523509 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGT-AAGTTTTACAAGGC
* * * *
86523564 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTTACAAGGC
* * * * * ** *
86523618 AAGGAAATCATGTAAGACCATGTCCAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGT-AAGTTTTACAAGGC
* * * * * * * *
86523673 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAG-TTCAAAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTTACAAGGC
* * * *
86523726 AAGGATACCACGTAAGACCATGTCAAGATATGGAAATGGTAAGTTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTT
86523772 AAAAAGGAAA
Statistics
Matches: 204, Mismatches: 56, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
53 41 0.20
54 79 0.39
55 84 0.41
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTTACAAGGC
Found at i:86523640 original size:109 final size:109
Alignment explanation
Indices: 86523466--86523758 Score: 489
Period size: 109 Copynumber: 2.7 Consensus size: 109
86523456 AGGATACCAA
*
86523466 GTAAGACCATGGCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCATGTAAGACCATG
1 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCATGTAAGACCATG
86523531 TCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
66 TCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
86523575 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCATGTAAGACCATG
1 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCATGTAAGACCATG
*
86523640 TCCAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
66 TCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
* * * * * * *
86523684 GTAAGACCATGCCAAGGCATGGCAATGGTGAG-TTCAAAAGGCAAGGATACCACGTAAGACCATG
1 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCATGTAAGACCATG
*
86523748 TCAAGATATGG
66 TCAAGACATGG
86523759 AAATGGTAAG
Statistics
Matches: 173, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
108 36 0.21
109 137 0.79
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (109 bp):
GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGAAATCATGTAAGACCATG
TCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
Found at i:86527823 original size:40 final size:40
Alignment explanation
Indices: 86527756--86527977 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
86527746 TATTCGAATG
* *
86527756 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * *
86527796 ATATTCGGGCTAAGTCCCGAAGTCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
86527836 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
86527876 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* *
86527916 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGATT
*
86527956 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86527978 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
39 15 0.09
40 145 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:86530915 original size:28 final size:27
Alignment explanation
Indices: 86530849--86530918 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
86530839 ATAGTGAGTC
86530849 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
86530876 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
86530904 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86530919 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:86530991 original size:42 final size:42
Alignment explanation
Indices: 86530927--86531035 Score: 200
Period size: 42 Copynumber: 2.6 Consensus size: 42
86530917 CTGTACAAAT
*
86530927 TTTAAACCCGCACACTTAGTGCCGATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCGATCTTGTCACCGTGTCCA
*
86530969 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCGATCTTGTCACCGTGTCCA
86531011 TTTATACCCGCACACTTAGTGCCGA
1 TTTATACCCGCACACTTAGTGCCGA
86531036 GACCAATACT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCGATCTTGTCACCGTGTCCA
Found at i:86537502 original size:49 final size:49
Alignment explanation
Indices: 86537422--86537519 Score: 115
Period size: 49 Copynumber: 2.0 Consensus size: 49
86537412 ACCAATTAAA
* * * *
86537422 TGTAACACCCCAAACCCGTGACCGTCACCGGATTTGACCACGAGGTGTT
1 TGTAACACCCCAAACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTT
** * **
86537471 TGTAACACCCCGTACCCGAGACCTTTGCCGGAGTCGAACACGAGGTGTT
1 TGTAACACCCCAAACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTT
86537520 AACGGACTTA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.20
Consensus pattern (49 bp):
TGTAACACCCCAAACCCGAGACCGTCACCGGAGTCGAACACGAGGTGTT
Found at i:86538897 original size:93 final size:93
Alignment explanation
Indices: 86538785--86538956 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86538775 GCCCATAAGT
* *
86538785 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86538850 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
86538878 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86538943 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
86538957 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86538952 original size:46 final size:46
Alignment explanation
Indices: 86538777--86538952 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86538767 TGTAACCCGC
* * *
86538777 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
86538823 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
86538873 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
86538916 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86538953 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:86541637 original size:27 final size:26
Alignment explanation
Indices: 86541617--86541687 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
86541607 ATATAGTGAG
86541617 TCCGCACACTTAGTGCTATATAATCAA
1 TCCGCACACTTAGTGCTATATAAT-AA
*
86541644 -CTCGCACACATAGTGCTATATAATCAAA
1 TC-CGCACACTTAGTGCTATATAAT--AA
86541672 T-CGCACACTTAGTGCT
1 TCCGCACACTTAGTGCT
86541688 GTACAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 1 0.03
27 35 0.92
28 2 0.05
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (26 bp):
TCCGCACACTTAGTGCTATATAATAA
Found at i:86541766 original size:42 final size:42
Alignment explanation
Indices: 86541696--86541802 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
86541686 CTGTACAAAT
* * *
86541696 TTTAAACCCGCACACTTAGTGCCGATCTTGTCACTGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
*
86541738 TTTATACCCGCACACTTAGTGTCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
86541780 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
86541803 GAGACCAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:86544308 original size:31 final size:31
Alignment explanation
Indices: 86544249--86544310 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
86544239 GAGTTTGATC
*
86544249 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
86544280 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
86544311 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:86553469 original size:46 final size:46
Alignment explanation
Indices: 86553416--86553591 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86553406 TATTTGGGCA
86553416 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
86553462 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
86553509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
86553555 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86553592 GCGGGTTAGA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:86553571 original size:93 final size:93
Alignment explanation
Indices: 86553412--86553583 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86553402 GGGATATTTG
* *
86553412 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86553477 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
86553505 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
86553570 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
86553584 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:86559500 original size:31 final size:31
Alignment explanation
Indices: 86559441--86559502 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
86559431 GAGTTTGATC
*
86559441 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
86559472 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
86559503 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:86568714 original size:46 final size:46
Alignment explanation
Indices: 86568642--86568863 Score: 274
Period size: 46 Copynumber: 4.8 Consensus size: 46
86568632 TATTTGGGCA
*
86568642 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
86568688 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
86568733 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
86568780 TCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 T-CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
86568827 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86568864 GCGGGTTACA
Statistics
Matches: 153, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 4 0.03
46 106 0.69
47 28 0.18
48 2 0.01
50 4 0.03
51 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:86568797 original size:93 final size:93
Alignment explanation
Indices: 86568638--86568809 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
86568628 GGGATATTTG
*
86568638 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
86568703 TTGAGTTCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
86568731 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-TCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT-CCGAACTCGTTGA
86568795 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
86568810 ACTTATGGAT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 74 0.99
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:86571758 original size:28 final size:27
Alignment explanation
Indices: 86571692--86571761 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
86571682 ATAGTGAGTC
*
86571692 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
86571719 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
86571747 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86571762 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:86571840 original size:42 final size:42
Alignment explanation
Indices: 86571770--86571876 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
86571760 CTGTACAAAT
* **
86571770 TTTAAACCCGCACACTTAGTGCTGATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
86571812 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
86571854 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
86571877 GAGACCAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:86579755 original size:93 final size:93
Alignment explanation
Indices: 86579643--86579814 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86579633 GCCCATAAGT
* *
86579643 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86579708 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
86579736 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
86579801 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
86579815 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86579810 original size:46 final size:46
Alignment explanation
Indices: 86579635--86579810 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
86579625 TGTAACCCGC
* * *
86579635 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
86579681 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
86579731 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
86579774 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86579811 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:86582536 original size:28 final size:27
Alignment explanation
Indices: 86582470--86582539 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
86582460 ATAGTGAGTC
86582470 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
86582497 CGCACACATAGTGCTATATAATCAAAGT
1 CGCACACTTAGTGCTATATAATC-AACT
86582525 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86582540 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:86582618 original size:42 final size:42
Alignment explanation
Indices: 86582548--86582654 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
86582538 CTGTACAAAT
* * *
86582548 TTTAAACCCGCACACTTAGTGCCGATCTTGTCACTGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
*
86582590 TTTATACCCGCACACTTAGTGTCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
86582632 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
86582655 GAGACCAATA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:86591128 original size:39 final size:40
Alignment explanation
Indices: 86591050--86591269 Score: 304
Period size: 39 Copynumber: 5.6 Consensus size: 40
86591040 TATTCGAATG
* * *
86591050 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
86591090 ATATCCGGGCTAAGTCCC-AAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
86591129 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
86591169 ATATCCGGGCTAAGT-CCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* * *
86591208 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGATT
*
86591248 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86591270 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
39 85 0.52
40 75 0.46
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:86591181 original size:79 final size:79
Alignment explanation
Indices: 86591050--86591269 Score: 318
Period size: 79 Copynumber: 2.8 Consensus size: 79
86591040 TATTCGAATG
* *
86591050 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGTCCCAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCAAGGCAT
*
86591115 TTGTGCTATTGATT
66 TTGTGCTATTGACT
* * *
86591129 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCGAAGGCTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCAAGGCAT
86591194 TTGTGCTATTGACT
66 TTGTGCTATTGACT
* * * *
86591208 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTATATCCGGGCTAAGTCCC-AAGG
86591270 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
78 9 0.07
79 116 0.91
80 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCAAGGCAT
TTGTGCTATTGACT
Found at i:86593063 original size:42 final size:42
Alignment explanation
Indices: 86593002--86593199 Score: 231
Period size: 42 Copynumber: 4.6 Consensus size: 42
86592992 TCGTTTTCTC
** * * *
86593002 GATGCCATAGTTCAACTATGGTCTTGCACATCTTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
*
86593044 GATGCCATATCCCAGCTATGGTCTTACACATATTCACATAAT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
*
86593086 GATGCCATAGCCCAGCTATGGTCTTACACATATTCATAT-AT
1 GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
86593127 CGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATATCTCACT
1 -GATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA----A-T
* *
86593174 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATAGCCCAGCTATGGTCTTA
86593200 TACAGTAGCA
Statistics
Matches: 137, Mismatches: 11, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
41 7 0.05
42 103 0.75
43 1 0.01
46 25 0.18
47 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAAT
Found at i:86593230 original size:47 final size:46
Alignment explanation
Indices: 86593127--86593250 Score: 167
Period size: 47 Copynumber: 2.7 Consensus size: 46
86593117 ATTCATATAT
* * * * *
86593127 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
86593173 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
86593220 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
86593251 GAAATTACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 27 0.40
47 41 0.60
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:86593269 original size:7 final size:7
Alignment explanation
Indices: 86593257--86593290 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
86593247 TACGGAAATT
86593257 ACTTGTC
1 ACTTGTC
86593264 ACTTGTC
1 ACTTGTC
86593271 ACTTGTC
1 ACTTGTC
86593278 ACTTGTC
1 ACTTGTC
86593285 ACTTGT
1 ACTTGT
86593291 AGCCGAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44
Consensus pattern (7 bp):
ACTTGTC
Found at i:86593324 original size:31 final size:31
Alignment explanation
Indices: 86593289--86593435 Score: 213
Period size: 31 Copynumber: 4.7 Consensus size: 31
86593279 CTTGTCACTT
* *
86593289 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
86593320 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* *
86593351 GTAGCCGGAGCAACCACTTTTCACTGATTAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
*
86593382 GTAGCCGGAGCTACCACTTTTCACTTATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAG
* * *
86593413 GTAGCAGAAGCTATCACTTTTCA
1 GTAGCCGGAGCTACCACTTTTCA
86593436 GTTGTCATTT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 104 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAG
Found at i:86593517 original size:50 final size:50
Alignment explanation
Indices: 86593413--86593644 Score: 304
Period size: 50 Copynumber: 4.5 Consensus size: 50
86593403 CACTTATCAG
* * * *
86593413 GTAGCAGAAGCTATCACTTTTCAGTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
86593464 GTAGCCGAAGCTATCACTTATCACTTTCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCA-TTTGTCCTTGATCAGATAAGT
*
86593514 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTG-----ATCAGATAAGT
* * *
86593569 GTAGCTGAAGCTATTACTTATCACTTTCATTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
86593619 GTAACCAAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
86593645 GTTGCCATGG
Statistics
Matches: 163, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
49 3 0.02
50 86 0.53
51 26 0.16
55 48 0.29
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:86593573 original size:105 final size:105
Alignment explanation
Indices: 86593453--86593644 Score: 314
Period size: 105 Copynumber: 1.8 Consensus size: 105
86593443 TTTGTCATTG
*
86593453 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCACTTT-TCCTTGATCAGATAAGTGTA
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCA-TTTGTCCTTAATCAGATAAGTGTA
* * *
86593517 GCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAA
65 ACCAAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAA
* *
86593558 ATCAGATAAGTGTAGCTGAAGCTATTACTTATCACTTTCATTTGTCCTTAATCAGATAAGTGTAA
1 ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTAATCAGATAAGTGTAA
86593623 CCAAAGCTATCACTTATCACTT
66 CCAAAGCTATCACTTATCACTT
86593645 GTTGCCATGG
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
104 3 0.04
105 77 0.96
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (105 bp):
ATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTAATCAGATAAGTGTAA
CCAAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAA
Found at i:86594959 original size:23 final size:22
Alignment explanation
Indices: 86594931--86595005 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 22
86594921 CAACTTATTG
86594931 GAGCTTACCGTTCTAGCTCG-TA
1 GAGCTTACCGTTC-AGCTCGATA
* *
86594953 TGAGCTTACTGTTCAGCTTGATA
1 -GAGCTTACCGTTCAGCTCGATA
*
86594976 GAGCTTACCATTTCAGCTC-ATTA
1 GAGCTTACC-GTTCAGCTCGA-TA
86594999 GAGCTTA
1 GAGCTTA
86595006 TTGTTCATCA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
22 14 0.32
23 30 0.68
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (22 bp):
GAGCTTACCGTTCAGCTCGATA
Found at i:86594979 original size:22 final size:23
Alignment explanation
Indices: 86594931--86594984 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
86594921 CAACTTATTG
86594931 GAGCTTACCGTTCTAGCTCGTAT
1 GAGCTTACCGTTCTAGCTCGTAT
* *
86594954 GAGCTTACTGTTC-AGCTTG-AT
1 GAGCTTACCGTTCTAGCTCGTAT
86594975 AGAGCTTACC
1 -GAGCTTACC
86594985 ATTTCAGCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 13 0.48
23 12 0.44
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (23 bp):
GAGCTTACCGTTCTAGCTCGTAT
Found at i:86596926 original size:43 final size:43
Alignment explanation
Indices: 86596862--86597005 Score: 189
Period size: 43 Copynumber: 3.3 Consensus size: 43
86596852 GCAATTTTTA
* * *
86596862 GTCATGTTCTTTAGCGACGTTTGTGGGGAAAGCGCCGCTAAAG
1 GTCATGTTCTATAACGGCGTTTGTGGGGAAAGCGCCGCTAAAG
* ***
86596905 GTCATGTTCTATAATGGCGTTTGTGGGGAAAATACCGCTAAAG
1 GTCATGTTCTATAACGGCGTTTGTGGGGAAAGCGCCGCTAAAG
* * * *
86596948 GTCATGTTCTTTAACGGCATTTGTGGGAAAAGCGTCGCTAAAG
1 GTCATGTTCTATAACGGCGTTTGTGGGGAAAGCGCCGCTAAAG
86596991 GTCATGTTCTATAAC
1 GTCATGTTCTATAAC
86597006 AACGTTTTTC
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 85 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GTCATGTTCTATAACGGCGTTTGTGGGGAAAGCGCCGCTAAAG
Found at i:86597164 original size:2 final size:2
Alignment explanation
Indices: 86597157--86597188 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
86597147 TAATTCTTAA
86597157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86597189 GTCTAATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86598117 original size:81 final size:82
Alignment explanation
Indices: 86597967--86598128 Score: 254
Period size: 81 Copynumber: 2.0 Consensus size: 82
86597957 TTATGTTAAC
***
86597967 TAGTTTTCAAAAGGTTGATGTCAAAATTGACTCTTTCTAAAAAGTTAAGGGTCAATTTTTT-TTT
1 TAGTTTTCAAAAGGTTGATGTCAAAATTGACTCTTTCTAAAAAGTTAAGGGTCAATTTTTTAAAA
*
86598031 TAAAAAGAATAAAACTT
66 AAAAAAGAATAAAACTT
* *
86598048 TAGTTTTTAAAAGGTTGATGTCAAAATTGACTCTTTCTAAAAAGTTAAGGGTTAATTTTTTAAAA
1 TAGTTTTCAAAAGGTTGATGTCAAAATTGACTCTTTCTAAAAAGTTAAGGGTCAATTTTTT-AAA
86598113 AAAAAAAGAATAAAAC
65 AAAAAAAGAATAAAAC
86598129 CCAAATTAAC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
81 59 0.81
83 14 0.19
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (82 bp):
TAGTTTTCAAAAGGTTGATGTCAAAATTGACTCTTTCTAAAAAGTTAAGGGTCAATTTTTTAAAA
AAAAAAGAATAAAACTT
Found at i:86600767 original size:27 final size:25
Alignment explanation
Indices: 86600725--86600788 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
86600715 AAATTTTGAA
*
86600725 ATTTCTTAAATTTTAAAAATCTTTTT
1 ATTTTTTAAATTTTAAAAA-CTTTTT
* *
86600751 ATTTTTTATAATTTTAAAGAGTTTTT
1 ATTTTTTA-AATTTTAAAAACTTTTT
86600777 ATTTTTCTAAAT
1 ATTTTT-TAAAT
86600789 AAGAAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 21 0.64
27 12 0.36
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (25 bp):
ATTTTTTAAATTTTAAAAACTTTTT
Found at i:86601216 original size:2 final size:2
Alignment explanation
Indices: 86601209--86601235 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86601199 ATTTTATAGT
86601209 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
86601236 TTAAAATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86604929 original size:15 final size:16
Alignment explanation
Indices: 86604909--86604938 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
86604899 AATGGAAAAG
86604909 TTACTCTT-CCTTTAC
1 TTACTCTTACCTTTAC
86604924 TTACTCTTACCTTTA
1 TTACTCTTACCTTTA
86604939 TTTCTAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (16 bp):
TTACTCTTACCTTTAC
Found at i:86605603 original size:16 final size:17
Alignment explanation
Indices: 86605561--86605603 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
86605551 TTCGGGAGTC
86605561 GGTTACGCACGAGGAAA
1 GGTTACGCACGAGGAAA
*
86605578 GGTTACGCACGAGGAAG
1 GGTTACGCACGAGGAAA
86605595 GGTTA-GCAC
1 GGTTACGCAC
86605604 CCTCGATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.30, C:0.19, G:0.37, T:0.14
Consensus pattern (17 bp):
GGTTACGCACGAGGAAA
Found at i:86606313 original size:3 final size:3
Alignment explanation
Indices: 86606297--86606344 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
86606287 GTAATATAAA
* *
86606297 GAT GAT AAT AAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
86606345 AGTAAAAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:86606496 original size:3 final size:3
Alignment explanation
Indices: 86606481--86606734 Score: 125
Period size: 3 Copynumber: 84.7 Consensus size: 3
86606471 AATATTGTAT
* * *
86606481 TAA TAA GAA TAA TAA T-A TAA TAA TAA TAA TCA TGGAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T--AA TAA TAA TAA
* ** * * * *
86606527 TAT TAA T-A TTT TAAA TAA -GA TAA TAA TAA TAGA TAGA -AA GCAG TAG
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TA-A TA-A TAA -TAA TAA
* * * * *
86606573 TAA TAA TACGT TAA TAA -AA GTAA GAG TAA TAA TAA T-A TAT TGA TAA
1 TAA TAA TA--A TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA
86606619 TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** * *
86606664 -AG GAA TAA TAA TAA TTG TAA -AA TAA TAA TAG TGA TAA TAA TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* *
86606708 TCA -AA TAA TAA TAG TAA -AA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
86606735 TATTAAATTA
Statistics
Matches: 189, Mismatches: 41, Indels: 42
0.69 0.15 0.15
Matches are distributed among these distances:
2 18 0.10
3 154 0.81
4 14 0.07
5 3 0.02
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:86606507 original size:23 final size:23
Alignment explanation
Indices: 86606466--86606509 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
86606456 GGTAGAAAAG
** *
86606466 ATAATAATATTGTATTAATAAGA
1 ATAATAATATAATAATAATAAGA
86606489 ATAATAATATAATAATAATAA
1 ATAATAATATAATAATAATAA
86606510 TCATGGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (23 bp):
ATAATAATATAATAATAATAAGA
Found at i:86606621 original size:17 final size:18
Alignment explanation
Indices: 86606599--86606733 Score: 103
Period size: 17 Copynumber: 7.9 Consensus size: 18
86606589 AAAGTAAGAG
*
86606599 TAATAATAAT-ATATTGA
1 TAATAATAATAATAATGA
*
86606616 TAATAAATAATAATAATAA
1 TAAT-AATAATAATAATGA
86606635 TAATAATAATAATAAT-A
1 TAATAATAATAATAATGA
86606652 TAATAATAAT-A-AA-G-
1 TAATAATAATAATAATGA
*
86606666 GAATAATAATAAT--TG-
1 TAATAATAATAATAATGA
*
86606681 TAA-AATAATAATAGTGA
1 TAATAATAATAATAATGA
*
86606698 TAATAATATATCAAATAATAA
1 TAATAATA-AT--AATAATGA
*
86606719 TAGTAA-AATAATAAT
1 TAATAATAATAATAAT
86606734 ATATTAAATT
Statistics
Matches: 98, Mismatches: 7, Indels: 26
0.75 0.05 0.20
Matches are distributed among these distances:
14 18 0.18
15 6 0.06
16 3 0.03
17 24 0.24
18 22 0.22
19 13 0.13
20 1 0.01
21 11 0.11
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (18 bp):
TAATAATAATAATAATGA
Found at i:86606729 original size:14 final size:15
Alignment explanation
Indices: 86606599--86606734 Score: 139
Period size: 14 Copynumber: 9.7 Consensus size: 15
86606589 AAAGTAAGAG
*
86606599 TAATAATAATA-TAT
1 TAATAATAATAGTAA
*
86606613 TGATAATAA-A-TAA
1 TAATAATAATAGTAA
*
86606626 TAATAATAATAATAA
1 TAATAATAATAGTAA
86606641 TAATAATAATA-TAA
1 TAATAATAATAGTAA
*
86606655 TAATAATAA-AGGAA
1 TAATAATAATAGTAA
*
86606669 TAATAATAATTGTAA
1 TAATAATAATAGTAA
*
86606684 -AATAATAATAGTGA
1 TAATAATAATAGTAA
*
86606698 TAATAAT-ATA-TCA
1 TAATAATAATAGTAA
86606711 -AATAATAATAGTAA
1 TAATAATAATAGTAA
86606725 -AATAATAATA
1 TAATAATAATA
86606735 TATTAAATTA
Statistics
Matches: 105, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
12 6 0.06
13 17 0.16
14 59 0.56
15 23 0.22
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (15 bp):
TAATAATAATAGTAA
Found at i:86610500 original size:18 final size:18
Alignment explanation
Indices: 86610473--86610528 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
86610463 TACGACCAGT
* *
86610473 TATGGTACTATTCATGTA
1 TATGGCACTATTCACGTA
86610491 TATGGCACTATTCACGTA
1 TATGGCACTATTCACGTA
** *
86610509 TATGATACTATTTACGTA
1 TATGGCACTATTCACGTA
86610527 TA
1 TA
86610529 CAATACTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (18 bp):
TATGGCACTATTCACGTA
Found at i:86610534 original size:18 final size:18
Alignment explanation
Indices: 86610497--86610548 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
86610487 TGTATATGGC
**
86610497 ACTATTCACGTATATGAT
1 ACTATTCACGTATACAAT
*
86610515 ACTATTTACGTATACAAT
1 ACTATTCACGTATACAAT
*
86610533 ACTGTTCACGTATACA
1 ACTATTCACGTATACA
86610549 GTAGTTGAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.37
Consensus pattern (18 bp):
ACTATTCACGTATACAAT
Found at i:86622750 original size:51 final size:51
Alignment explanation
Indices: 86622688--86622823 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 51
86622678 TAGAAACATG
* *
86622688 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATACGTA
* * ** * *
86622739 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATACGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATACGTA
*
86622790 ATCTTAAAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGAT
86622824 TTGATTGTAA
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATACGTA
Found at i:86627953 original size:51 final size:51
Alignment explanation
Indices: 86627891--86628026 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
86627881 TAGAAACATG
*
86627891 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* * ** * * *
86627942 ATCTTATAAGATATTATTTTATAAGATTACATAGCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
** *
86627993 ATCTTAGGAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGAT
86628027 TTGATTGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:86627998 original size:19 final size:19
Alignment explanation
Indices: 86627923--86627999 Score: 51
Period size: 19 Copynumber: 4.4 Consensus size: 19
86627913 AATCTTAGAG
*
86627923 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
86627942 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
86627957 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
*
86627973 TAGCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
86627993 ATCTTAG
1 ATCTTAG
86628000 GAGATATGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 14
0.68 0.11 0.22
Matches are distributed among these distances:
14 3 0.07
15 9 0.20
16 1 0.02
17 9 0.20
18 2 0.05
19 18 0.41
20 2 0.05
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:86630083 original size:17 final size:17
Alignment explanation
Indices: 86630039--86630083 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
86630029 ATTAAGTTAT
*
86630039 TATTAAAGTTAAATTAG
1 TATTAAAGTTTAATTAG
86630056 TATTAAAGTTTAATTAG
1 TATTAAAGTTTAATTAG
86630073 TATTAAAGTTT
1 TATTAAAGTTT
86630084 TGTTATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (17 bp):
TATTAAAGTTTAATTAG
Found at i:86632572 original size:14 final size:14
Alignment explanation
Indices: 86632555--86632581 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86632545 ATATATATAA
86632555 ATATAGATATGTAT
1 ATATAGATATGTAT
86632569 ATATAGATATGTA
1 ATATAGATATGTA
86632582 GGTGATATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (14 bp):
ATATAGATATGTAT
Found at i:86633725 original size:75 final size:75
Alignment explanation
Indices: 86633610--86633778 Score: 214
Period size: 75 Copynumber: 2.3 Consensus size: 75
86633600 GCACACAATC
* * * * * *
86633610 GTCGGTTAATTCGACTAGCACTGGGTTCAATCACTATTGGTTTATCCAACTAGGGCTGGGCTCAC
1 GTCGATTAATCCGACTAGCACTGAGTGCAATCACTATTGGTCTATCCAACTAGAGCTGGGCTCAC
*
86633675 AATAATTATT
66 AATAATTAGT
* * *
86633685 TTCGATTAATCCGACTAGCACTGAGTGCAAAT-ATTGTTGGTCTATCCAACTAGAGCTGGGCTCA
1 GTCGATTAATCCGACTAGCACTGAGTGC-AATCACTATTGGTCTATCCAACTAGAGCTGGGCTCA
* *
86633749 CATTTATTAGT
65 CAATAATTAGT
86633760 GTCGATTAATCCGACTAGC
1 GTCGATTAATCCGACTAGC
86633779 GCTGGGCGCA
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
75 77 0.96
76 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (75 bp):
GTCGATTAATCCGACTAGCACTGAGTGCAATCACTATTGGTCTATCCAACTAGAGCTGGGCTCAC
AATAATTAGT
Found at i:86638560 original size:34 final size:34
Alignment explanation
Indices: 86638522--86638590 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
86638512 ACATGTATGT
86638522 ATTATACTTTATACACATGTAATTAATGTTTACC
1 ATTATACTTTATACACATGTAATTAATGTTTACC
86638556 ATTATACTTTATACACATGTAATTAATGTTTACC
1 ATTATACTTTATACACATGTAATTAATGTTTACC
86638590 A
1 A
86638591 CACATTTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.06, T:0.43
Consensus pattern (34 bp):
ATTATACTTTATACACATGTAATTAATGTTTACC
Found at i:86652738 original size:40 final size:39
Alignment explanation
Indices: 86652578--86652740 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
86652568 TGTGTATGAA
* **
86652578 TGTGCGAATTGTGATATCCGAACTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
86652617 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
86652656 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
86652695 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
86652735 TGTGCG
1 TGTGCG
86652741 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:86652756 original size:40 final size:39
Alignment explanation
Indices: 86652578--86652771 Score: 235
Period size: 39 Copynumber: 4.9 Consensus size: 39
86652568 TGTGTATGAA
* * **
86652578 TGTGCGAATTGTGATATCCGAACTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
86652617 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
86652656 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
86652695 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
86652735 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
86652772 GTTTGAACGA
Statistics
Matches: 136, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 95 0.70
40 41 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:86666479 original size:21 final size:22
Alignment explanation
Indices: 86666451--86666491 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
86666441 AAAAAAAATA
86666451 CAGTTTCAGT-CAGT-GTTTTT
1 CAGTTTCAGTACAGTAGTTTTT
86666471 CAGTATTCAGTACAGTAGTTT
1 CAGT-TTCAGTACAGTAGTTT
86666492 ACCCCTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 4 0.22
23 4 0.22
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.44
Consensus pattern (22 bp):
CAGTTTCAGTACAGTAGTTTTT
Found at i:86667493 original size:31 final size:30
Alignment explanation
Indices: 86667458--86667515 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
86667448 TCCCTTTTCT
*
86667458 TTTTCTTTCCCT-TTCCTTCTTTCCTATTCCA
1 TTTTCATTCCCTGTTCCTT-TTT-CTATTCCA
*
86667489 TTTTCATTCTCTGTTCCTTTTTCTATT
1 TTTTCATTCCCTGTTCCTTTTTCTATT
86667516 TTTTTCTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.21
31 13 0.54
32 6 0.25
ACGTcount: A:0.07, C:0.29, G:0.02, T:0.62
Consensus pattern (30 bp):
TTTTCATTCCCTGTTCCTTTTTCTATTCCA
Found at i:86667531 original size:19 final size:19
Alignment explanation
Indices: 86667507--86667544 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
86667497 CTCTGTTCCT
*
86667507 TTTTCTATTT-TTTTCTTTA
1 TTTTCT-TTTATTTACTTTA
86667526 TTTTCTTTTATTTACTTTA
1 TTTTCTTTTATTTACTTTA
86667545 ACTATTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCTTTTATTTACTTTA
Found at i:86678732 original size:2 final size:2
Alignment explanation
Indices: 86678725--86678765 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
86678715 ACAATGTAGT
86678725 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86678766 TAATTGGGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Done.