Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 299 of 427
Found at i:86679276 original size:8 final size:8
Alignment explanation
Indices: 86679265--86679365 Score: 78
Period size: 8 Copynumber: 12.0 Consensus size: 8
86679255 TTAAATTTTA
86679265 ATAAAAAT
1 ATAAAAAT
86679273 ATAAAAAT
1 ATAAAAAT
*
86679281 ATTTAAAAT
1 A-TAAAAAT
*
86679290 -TAAAATT
1 ATAAAAAT
* *
86679297 AGAAAAAA
1 ATAAAAAT
86679305 ATAAAAAT
1 ATAAAAAT
*
86679313 AGTAAAAAA
1 A-TAAAAAT
86679322 ATAAAAAATT
1 AT-AAAAA-T
*
86679332 ATCAAATAT
1 AT-AAAAAT
86679341 ATAAAAAT
1 ATAAAAAT
*
86679349 ATAAAAAA
1 ATAAAAAT
86679357 ATATAAAAT
1 ATA-AAAAT
86679366 TTTATAAAGT
Statistics
Matches: 72, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
7 5 0.07
8 36 0.50
9 25 0.35
10 6 0.08
ACGTcount: A:0.71, C:0.01, G:0.02, T:0.26
Consensus pattern (8 bp):
ATAAAAAT
Found at i:86679356 original size:10 final size:10
Alignment explanation
Indices: 86679335--86679364 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
86679325 AAAAATTATC
*
86679335 AAATATATAA
1 AAATATAAAA
86679345 AAATATAAAA
1 AAATATAAAA
86679355 AAATATAAAA
1 AAATATAAAA
86679365 TTTTATAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
AAATATAAAA
Found at i:86680188 original size:41 final size:40
Alignment explanation
Indices: 86680112--86680197 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
86680102 CAAATAGATT
*
86680112 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATAATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * **
86680153 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
86680193 TAAAA
1 TAAAA
86680198 AGTGATTACA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.66, C:0.10, G:0.02, T:0.21
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:86680604 original size:89 final size:88
Alignment explanation
Indices: 86680439--86680604 Score: 210
Period size: 89 Copynumber: 1.9 Consensus size: 88
86680429 GCACACCTCT
* **
86680439 AAGTTCAAGTACCCAATTGAGTGGAAAAAAAAATAAGGGCTTAATTGCTTTTTTTAAAAAAGTTT
1 AAGTTCAAGTACCCAATTGAGTGCAAAAAAAAATAAGGGCTTAATTGCAGTTTTTAAAAAAGTTT
* *
86680504 GAGGGACTTTTTGATGCATCTTGA
66 GA-GAAATTTTTGATGCATCTTGA
* * *
86680528 AAGTTCAAGTTCCCAATTGAGTGCAAAAAAGAAAGT-TGGAGCTTAATTGCAGTTTTTGAAAAAG
1 AAGTTCAAGTACCCAATTGAGTGCAAAAAA-AAA-TAAGG-GCTTAATTGCAGTTTTTAAAAAAG
86680592 TTTGA-AAATTTTT
63 TTTGAGAAATTTTT
86680605 TACACCATTA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
89 34 0.52
90 5 0.08
91 27 0.41
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (88 bp):
AAGTTCAAGTACCCAATTGAGTGCAAAAAAAAATAAGGGCTTAATTGCAGTTTTTAAAAAAGTTT
GAGAAATTTTTGATGCATCTTGA
Found at i:86681329 original size:2 final size:2
Alignment explanation
Indices: 86681322--86681361 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
86681312 TAAATTTGAC
86681322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86681362 GTTACTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86687822 original size:40 final size:40
Alignment explanation
Indices: 86687752--86687896 Score: 148
Period size: 40 Copynumber: 3.6 Consensus size: 40
86687742 CAATTGAATG
* * * * * *
86687752 ATATCCGGGCTAAGTCCCAAAGACATTTGTGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAGTT
* * *
86687792 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAGTT
* * **
86687832 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGAAGTT
*
86687872 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
86687897 TTCGTGCACG
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAGTT
Found at i:86687897 original size:40 final size:40
Alignment explanation
Indices: 86687793--86687919 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 40
86687783 CTGGAAATTA
* * *
86687793 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-CAGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTC-G-TTC
86687834 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
* * *
86687873 TATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
86687913 TATCCGG
1 TATCCGG
86687920 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
39 5 0.06
40 71 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
Found at i:86692432 original size:40 final size:40
Alignment explanation
Indices: 86692379--86692465 Score: 102
Period size: 40 Copynumber: 2.2 Consensus size: 40
86692369 TAACTTATTA
* * *
86692379 TTTTTAACCTTTCACTTATAAATATTATAACATTATAAAG
1 TTTTCAACCTTTCACTTATAAATATTAGAACATAATAAAG
* * * *
86692419 TTTTCAACTTTTCATTTATAATTATTAGAATATAATAAAG
1 TTTTCAACCTTTCACTTATAAATATTAGAACATAATAAAG
*
86692459 ATTTCAA
1 TTTTCAA
86692466 AAATATTTTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.46
Consensus pattern (40 bp):
TTTTCAACCTTTCACTTATAAATATTAGAACATAATAAAG
Found at i:86692837 original size:43 final size:42
Alignment explanation
Indices: 86692775--86692949 Score: 172
Period size: 43 Copynumber: 4.1 Consensus size: 42
86692765 GCGTTTTTTT
* *
86692775 CTAAAGACCAGGACTTTTAGTGGCGCTTTTTTAAAAAACGCCG
1 CTAAAGACCAGGACATTTAGCGGCGCTTTTTT-AAAAACGCCG
* ***
86692818 CTAAAGACCAGGACCTTTAGCGGCGCTTTTACCGAAAACGCCG
1 CTAAAGACCAGGACATTTAGCGGCGCTTTT-TTAAAAACGCCG
* * * *
86692861 CTAAAGACCATGACATTTAGCGGCGCTTTTTTTCAAGACGCCA
1 CTAAAGACCAGGACATTTAGCGGCGC-TTTTTTAAAAACGCCG
* * ** * *
86692904 CTATATAATA-GACGTTTAGCGACGCTTTTTTAAAAACGCCG
1 CTAAAGACCAGGACATTTAGCGGCGCTTTTTTAAAAACGCCG
86692945 CTAAA
1 CTAAA
86692950 AATATAAACT
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
41 17 0.16
42 13 0.12
43 74 0.69
44 4 0.04
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
CTAAAGACCAGGACATTTAGCGGCGCTTTTTTAAAAACGCCG
Found at i:86697203 original size:9 final size:8
Alignment explanation
Indices: 86697178--86697218 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
86697168 AACTAAAATA
86697178 TTAAATTT
1 TTAAATTT
*
86697186 TTAATTTT
1 TTAAATTT
86697194 TTAAGATTT
1 TTAA-ATTT
86697203 TTATAATTT
1 TTA-AATTT
86697212 TTAAATT
1 TTAAATT
86697219 AACATATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
8 15 0.52
9 13 0.45
10 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (8 bp):
TTAAATTT
Found at i:86697510 original size:23 final size:22
Alignment explanation
Indices: 86697482--86697539 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
86697472 GGTTTGGGTG
*
86697482 TTAGGGTTTATAGGTTGGAGTT
1 TTAGGGTTTATAGGTTGGAGAT
* *
86697504 TTAAGGGTTTAT-GATTTGAGAT
1 TT-AGGGTTTATAGGTTGGAGAT
86697526 TTAGGGTTTA-AGGT
1 TTAGGGTTTATAGGT
86697540 GTTGGGATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
21 10 0.33
22 11 0.37
23 9 0.30
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (22 bp):
TTAGGGTTTATAGGTTGGAGAT
Found at i:86698411 original size:41 final size:41
Alignment explanation
Indices: 86698353--86698502 Score: 230
Period size: 41 Copynumber: 3.7 Consensus size: 41
86698343 CTTTTAGCGG
*
86698353 CTTAAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGCTTT
1 CTTAAAAACGCCGCTAATGCTCAGATCTTTAGCGGCGCTTT
* *
86698394 CTTAAAAACGCCTCTAATGCTCAGATCTTTAGCGACGCTTT
1 CTTAAAAACGCCGCTAATGCTCAGATCTTTAGCGGCGCTTT
* *
86698435 CTTAAAAAGGCCGCTAATGCTCAGATCTTTAGCTGCGCTTT
1 CTTAAAAACGCCGCTAATGCTCAGATCTTTAGCGGCGCTTT
* *
86698476 CTTAAAAATGCCGCTAATACTCA-ATCT
1 CTTAAAAACGCCGCTAATGCTCAGATCT
86698503 ATTCGATTTT
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 4 0.04
41 96 0.96
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (41 bp):
CTTAAAAACGCCGCTAATGCTCAGATCTTTAGCGGCGCTTT
Found at i:86705899 original size:3 final size:3
Alignment explanation
Indices: 86705891--86705940 Score: 75
Period size: 3 Copynumber: 17.0 Consensus size: 3
86705881 GTCTGGAAAT
* *
86705891 TTA TTA TTA TTA TTA TTA TTA TTC TTA TTA TTC TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
86705938 TTA
1 TTA
86705941 GAAAAATAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:86706450 original size:22 final size:22
Alignment explanation
Indices: 86706408--86706450 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86706398 TATATATGTT
*
86706408 ATAAAAGAAATAAAGATGAAAC
1 ATAAAAGAAATAAAGAAGAAAC
86706430 ATAAAAGAAA-AAAGAAAGAAA
1 ATAAAAGAAATAAAG-AAGAAA
86706451 GTTACAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.74, C:0.02, G:0.14, T:0.09
Consensus pattern (22 bp):
ATAAAAGAAATAAAGAAGAAAC
Found at i:86707250 original size:6 final size:6
Alignment explanation
Indices: 86707234--86707290 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
86707224 GGAAAAGTGT
* * * * *
86707234 AATTGA TATTGA AATTGA AATTGT TA-TGA AAATGA AAATGA AATTGA
1 AATTGA AATTGA AATTGA AATTGA AATTGA AATTGA AATTGA AATTGA
86707281 GAATTGA AAT
1 -AATTGA AAT
86707291 ACCCTATTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
5 3 0.07
6 33 0.79
7 6 0.14
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (6 bp):
AATTGA
Found at i:86707255 original size:18 final size:18
Alignment explanation
Indices: 86707234--86707290 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 18
86707224 GGAAAAGTGT
86707234 AATTGATATTGAAATTGA
1 AATTGATATTGAAATTGA
* *
86707252 AATTGTTA-TGAAAATGA
1 AATTGATATTGAAATTGA
* *
86707269 AAATGAAATTGAGAATTGA
1 AATTGATATTGA-AATTGA
86707288 AAT
1 AAT
86707291 ACCCTATTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 13 0.43
18 10 0.33
19 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.18, T:0.33
Consensus pattern (18 bp):
AATTGATATTGAAATTGA
Found at i:86707422 original size:21 final size:22
Alignment explanation
Indices: 86707374--86707426 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
86707364 GGCTTTACCG
*
86707374 ATCAGGCACTTTATGTATCATAT
1 ATCAGGCACTTTATGCATCA-AT
*
86707397 ATCAGGCACTTTATGCATC-GT
1 ATCAGGCACTTTATGCATCAAT
86707418 ATCAGGCAC
1 ATCAGGCAC
86707427 CTAGTGTGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 10 0.36
23 18 0.64
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (22 bp):
ATCAGGCACTTTATGCATCAAT
Found at i:86707456 original size:20 final size:20
Alignment explanation
Indices: 86707396--86707460 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 20
86707386 ATGTATCATA
**
86707396 TATCAGGCACTTTATGCATCG
1 TATCAGGCAC-TTATGTGTCG
*
86707417 TATCAGGCACCTAGTGTGTCG
1 TATCAGGCACTTA-TGTGTCG
*
86707438 TCTCAGGCACTTATGTGTCG
1 TATCAGGCACTTATGTGTCG
86707458 TAT
1 TAT
86707461 ACTGATTAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 11 0.30
21 26 0.70
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (20 bp):
TATCAGGCACTTATGTGTCG
Found at i:86710949 original size:47 final size:47
Alignment explanation
Indices: 86710874--86710984 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
86710864 CCCCTCGGGA
* * *
86710874 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
86710921 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
86710968 CTTATCACATATATACA
1 CTTATCACTTATATACA
86710985 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:86711040 original size:46 final size:46
Alignment explanation
Indices: 86710988--86711215 Score: 429
Period size: 46 Copynumber: 5.0 Consensus size: 46
86710978 ATATACATCT
* * *
86710988 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86711034 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86711080 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86711126 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86711172 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
86711216 ATATTTAACT
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 179 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:86713967 original size:40 final size:40
Alignment explanation
Indices: 86713909--86714018 Score: 107
Period size: 40 Copynumber: 2.8 Consensus size: 40
86713899 GGATATAGCG
* * * *
86713909 ACTCACTCGATTGTCTTCGGGACATAGCCCGG-TTATAGTG
1 ACTCACACAATTGCCTTCGGGACATAGCCCGGATT-TAGTA
*
86713949 ATTCACACAATTGCCTTCGGGA-ATTAGCCCGGATTTAGTA
1 ACTCACACAATTGCCTTCGGGACA-TAGCCCGGATTTAGTA
* ** *
86713989 ACTCGCACAAAAGCCTTCGGGACTTAGCCC
1 ACTCACACAATTGCCTTCGGGACATAGCCC
86714019 AGATACCATT
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
39 1 0.02
40 54 0.95
41 2 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
ACTCACACAATTGCCTTCGGGACATAGCCCGGATTTAGTA
Found at i:86714731 original size:40 final size:40
Alignment explanation
Indices: 86714682--86714949 Score: 430
Period size: 40 Copynumber: 6.7 Consensus size: 40
86714672 CCAGCATGAT
* *
86714682 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
86714722 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
86714762 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
86714802 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
86714842 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
86714882 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
86714922 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGAACTTAGCCCGGATACATC
86714950 GTCGAGACCT
Statistics
Matches: 217, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 3 0.01
40 214 0.99
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86717578 original size:47 final size:47
Alignment explanation
Indices: 86717503--86717613 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
86717493 CCCCTCGGGA
* * *
86717503 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
86717550 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
86717597 CTTATCACATATATACA
1 CTTATCACTTATATACA
86717614 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:86717669 original size:46 final size:46
Alignment explanation
Indices: 86717617--86717844 Score: 429
Period size: 46 Copynumber: 5.0 Consensus size: 46
86717607 ATATACATCT
* * *
86717617 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86717663 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86717709 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86717755 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
86717801 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
86717845 ATATTTAACT
Statistics
Matches: 179, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 179 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:86722307 original size:2 final size:2
Alignment explanation
Indices: 86722300--86722337 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
86722290 TAAATTTGAC
86722300 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86722338 GTTACTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86724339 original size:21 final size:20
Alignment explanation
Indices: 86724274--86724339 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
86724264 ATTTTCAAAT
* *
86724274 TTATAGAAAATAGAATTAAA
1 TTATAAAAAATAGAAATAAA
86724294 TATATAAAAAATTCAGAAAT--A
1 T-TATAAAAAA-T-AGAAATAAA
86724315 -TATAATAAAATAGAAATAAA
1 TTATAA-AAAATAGAAATAAA
86724335 TTATA
1 TTATA
86724340 GATTATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
18 6 0.16
19 6 0.16
20 6 0.16
21 13 0.35
22 1 0.03
23 5 0.14
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (20 bp):
TTATAAAAAATAGAAATAAA
Found at i:86728046 original size:17 final size:17
Alignment explanation
Indices: 86728024--86728058 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
86728014 ATATGTGGTT
86728024 TTTTTTTAATTGCTTTA
1 TTTTTTTAATTGCTTTA
86728041 TTTTTTTAATTGCTTTA
1 TTTTTTTAATTGCTTTA
86728058 T
1 T
86728059 GCTATTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTTTTTAATTGCTTTA
Found at i:86729092 original size:2 final size:2
Alignment explanation
Indices: 86729085--86729138 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
86729075 TTCCTGCTTC
86729085 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
86729127 CA CA CA CA CA CA
1 CA CA CA CA CA CA
86729139 AAAAAAAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:86735447 original size:6 final size:6
Alignment explanation
Indices: 86735436--86735461 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
86735426 TTTGCAACCC
86735436 AAGGGG AAGGGG AAGGGG AAGGGG AA
1 AAGGGG AAGGGG AAGGGG AAGGGG AA
86735462 TGCGACGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:86736235 original size:13 final size:13
Alignment explanation
Indices: 86736219--86736243 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86736209 TAAATTGTTT
86736219 TATTCAATTTTAC
1 TATTCAATTTTAC
86736232 TATTCAATTTTA
1 TATTCAATTTTA
86736244 ATTTGAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTCAATTTTAC
Found at i:86739264 original size:27 final size:27
Alignment explanation
Indices: 86739226--86739278 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
86739216 ATAAAATAAG
86739226 GGTGGAGGGTACCCCACAAGCGGCACT
1 GGTGGAGGGTACCCCACAAGCGGCACT
* *
86739253 GGTGGAGGGTACCCCATAGGCGGCAC
1 GGTGGAGGGTACCCCACAAGCGGCAC
86739279 CAATCATTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.28, G:0.40, T:0.11
Consensus pattern (27 bp):
GGTGGAGGGTACCCCACAAGCGGCACT
Found at i:86739411 original size:3 final size:3
Alignment explanation
Indices: 86739400--86739445 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
86739390 AAGAAAGGGG
* *
86739400 GAA GGA GAA GAA -AA G-A GTA GAA -AA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
86739445 G
1 G
86739446 GAGGAGGAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (3 bp):
GAA
Found at i:86739489 original size:6 final size:6
Alignment explanation
Indices: 86739478--86739508 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
86739468 TGAGGGAAGA
*
86739478 AAAAAG AAAAAG AAAAAG AGAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
86739509 GAAGGAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:86739503 original size:18 final size:18
Alignment explanation
Indices: 86739480--86739526 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
86739470 AGGGAAGAAA
86739480 AAAGAAAAAGAAAAAGAG
1 AAAGAAAAAGAAAAAGAG
* *
86739498 AAAGAAAAAGAGAAGGAG
1 AAAGAAAAAGAAAAAGAG
*
86739516 -AAGAAGAAGAA
1 AAAGAAAAAGAA
86739527 GAGGGAGGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAGAG
Found at i:86739509 original size:12 final size:12
Alignment explanation
Indices: 86739478--86739511 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
86739468 TGAGGGAAGA
*
86739478 AAAAAGAAAAAG
1 AAAAAGAGAAAG
86739490 AAAAAGAGAAAG
1 AAAAAGAGAAAG
86739502 AAAAAGAGAA
1 AAAAAGAGAA
86739512 GGAGAAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:86739988 original size:13 final size:13
Alignment explanation
Indices: 86739970--86739996 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86739960 AGCTTCATAG
86739970 TATATTTTAAAAA
1 TATATTTTAAAAA
86739983 TATATTTTAAAAA
1 TATATTTTAAAAA
86739996 T
1 T
86739997 CCAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATATTTTAAAAA
Found at i:86740201 original size:126 final size:131
Alignment explanation
Indices: 86740051--86740861 Score: 600
Period size: 145 Copynumber: 5.8 Consensus size: 131
86740041 AATTAATATA
* * *
86740051 AATATATAAAATAATAGATATGAAACATCATGTACTAAAATAATATAAAAAAAAAAAAGAAAATA
1 AATATAAAAAATAATATATATGAAACATTATGTACTAAAATAATATAAAAAAAAAAAAGAAAATA
* * * *
86740116 GTATATTTTGAAAAATAAAATTCGAAAATAAAATAAAAATA-A-ACAGTCA-A-A-ATCA-GAGA
66 GTATATTTTAAAAAATAAAATTCGAAAATAAAATAAAAA-ACACAAAATCACAGATATCACGAAA
86740175 TT
130 TT
* *
86740177 AATATAAAAAATAATATATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAA
1 AATATAAAAAATAATATATATGAAACATTATGTACTAAAATAATATAAAAAA-AAAA-AAGAAAA
* *
86740242 TAGTATATTTTAAAAAATAAAA-TCGGAAAATAAAATAAAAAACGACCAAAATCACAGATTTTTA
64 TAGTATATTTTAAAAAATAAAATTC-GAAAATAAAATAAAAAAC-A-CAAAATCACAGA-TATCA
*
86740306 CTAAATT
125 CGAAATT
* *
86740313 AATATAAAAAACTAAAATAATACATGAAATATTATGTACTAAAATAATATAAAAAAATAAAATAC
1 AATATAAAAAA-T--AAT-ATATATGAAACATTATGTACTAAAATAATATAAAAAAA-AAAA-A-
* *
86740378 GAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAAATAAAAAAGGGC-CAAAATCAGAGT
59 GAAAATAGTATATTTTAAAAAATAAAATTCGAAAAT-AAAATAAAAAA---CACAAAATCACAG-
* * ** *
86740442 TTTTTTTCTAAATT
119 -ATATCACGAAATT
*
86740456 AATATAAAAAAATTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAAT
1 AATAT-AAAAAA-T--AAT-AT--ATATGAAACATTATGTACTAAAATAATATAAAAAA-AAAA-
* * * * *
86740521 ACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATAAAATAAAAATAAATGGCAAAAATCAG
57 AAGAAAATAGTATATTTTAAAAAATAAAATTCGAAAATAAAATAAAAA-ACA---C-AAAATCAC
* * * *
86740586 AGTTTTTTACTAAATT
117 AG-ATATCACGAAATT
86740602 AATATAAAAAACTAAAATAATACATATGAAACATTATGTACTAAAATAATATAAAAAATAAAATA
1 AATATAAAAAA-T--AAT-AT--ATATGAAACATTATGTACTAAAATAATATAAAAAA-AAAA-A
*
86740667 CGAAAATAGTATATTTTAAAAAGA-AAAA-TCTGAAAATAAAATAAAAAAACAAACGGCCAAAAT
58 AGAAAATAGTATATTTTAAAAA-ATAAAATTC-GAAAATAAAAT-AAAAAAC--A----CAAAAT
* * * * *
86740730 CAAAGTTTTTTACTAAATT
114 CACAG-ATATCACGAAATT
*
86740749 AATATAAAAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAA
1 AATAT-AAAAAAT-----AAT-AT--ATATGAAACATTATGTACTAAAATAATATAAAAAA-AAA
* *
86740814 ATACGAAAATAGTATATTTTAAAAAGA-AAAATCCGAAAATAAAATAAA
56 A-AAGAAAATAGTATATTTTAAAAA-ATAAAATTCGAAAATAAAATAAA
86740862 TACCAAAATA
Statistics
Matches: 599, Mismatches: 38, Indels: 73
0.84 0.05 0.10
Matches are distributed among these distances:
126 48 0.08
127 7 0.01
128 43 0.07
129 1 0.00
131 5 0.01
132 1 0.00
133 1 0.00
135 2 0.00
136 15 0.03
137 1 0.00
139 5 0.01
140 37 0.06
141 33 0.06
142 22 0.04
143 16 0.03
144 26 0.04
145 132 0.22
146 60 0.10
147 42 0.07
148 8 0.01
149 3 0.01
150 90 0.15
151 1 0.00
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.27
Consensus pattern (131 bp):
AATATAAAAAATAATATATATGAAACATTATGTACTAAAATAATATAAAAAAAAAAAAGAAAATA
GTATATTTTAAAAAATAAAATTCGAAAATAAAATAAAAAACACAAAATCACAGATATCACGAAAT
T
Found at i:86740241 original size:25 final size:25
Alignment explanation
Indices: 86740213--86740283 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 25
86740203 ATTATGTACT
86740213 AAAATAATATAAAAAATAAAATAC-G
1 AAAATAATATAAAAAATAAAAT-CGG
86740238 AAAATAGTATATTTTAAAAAATAAAATCGG
1 AAAATA--ATA---TAAAAAATAAAATCGG
*
86740268 AAAATAAAATAAAAAA
1 AAAATAATATAAAAAA
86740284 CGACCAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
25 13 0.33
27 3 0.08
28 2 0.05
29 1 0.03
30 20 0.51
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.23
Consensus pattern (25 bp):
AAAATAATATAAAAAATAAAATCGG
Found at i:86740808 original size:150 final size:146
Alignment explanation
Indices: 86740184--86740861 Score: 1029
Period size: 145 Copynumber: 4.7 Consensus size: 146
86740174 ATTAATATAA
*
86740184 AAAATAATATATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
1 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
* * * *
86740249 TTTTAAAAAATAAAATCGGAAAATAAAAT----AAAAAACGACCAAAATCACAGATTTTTACTAA
66 TTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAA
86740310 ATTAATATAAAAAACT
131 ATTAATATAAAAAACT
*
86740326 AAAATAATACA--TGAAATATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTAT
1 AAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATAGTAT
* * *
86740389 ATTTTAAAAAATAAAATCCGAAAAT--AA-AAATAAAAAAGGGCCAAAATCAGAGTTTTTTTTCT
65 ATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAAACGGCCAAAATCAGAG-TTTTTTACT
*
86740451 AAATTAATATAAAAAAATT
129 AAATTAATAT-AAAAAACT
86740470 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
1 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
* * * *
86740535 TTTTAAAAAATAAAATCCAAAAATAAAAT-AAAAATAAATGGCAAAAATCAGAGTTTTTTACTAA
66 TTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAA
86740599 ATTAATATAAAAAACT
131 ATTAATATAAAAAACT
*
86740615 AAAATAATACATATGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
1 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
* *
86740680 TTTTAAAAAGA-AAAATCTGAAAATAAAATAAAAAAACAAACGGCCAAAATCAAAGTTTTTTACT
66 TTTTAAAAA-ATAAAATCCGAAAATAAAATAAAAAAA-AAACGGCCAAAATCAGAGTTTTTTACT
*
86740744 AAATTAATATAAAAAAATACA
129 AAATTAATAT--AAAAA-ACT
86740765 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
1 AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
86740830 TTTTAAAAAGA-AAAATCCGAAAATAAAATAAA
66 TTTTAAAAA-ATAAAATCCGAAAATAAAATAAA
86740862 TACCAAAATA
Statistics
Matches: 491, Mismatches: 27, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
139 2 0.00
140 25 0.05
141 49 0.10
142 28 0.06
143 17 0.03
144 18 0.04
145 145 0.30
146 49 0.10
147 56 0.11
149 5 0.01
150 97 0.20
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.27
Consensus pattern (146 bp):
AAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTATA
TTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAAAACGGCCAAAATCAGAGTTTTTTACTAA
ATTAATATAAAAAACT
Found at i:86740837 original size:295 final size:288
Alignment explanation
Indices: 86740183--86740861 Score: 1082
Period size: 295 Copynumber: 2.3 Consensus size: 288
86740173 GATTAATATA
*
86740183 AAAAATAATATATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTAT
1 AAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTAT
* *
86740248 ATTTTAAAAAATAAAATCGGAAAATAAAAT--AAAAAACGACCAAAATCACAGATTTTTACTAAA
66 ATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAACGACAAAAATCACAGATTTTTACTAAA
*
86740311 TTAATATAAAAAACTAAAATAATACATGAAATATTATGTACTAAAATAATATAAAAAAATAAAAT
131 TTAATATAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAAT
* * *
86740376 ACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAAATAAAAAAGGGCCAAAATCAGAG
196 ACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAAAAAAAAAACGGCCAAAATCAAAG
*
86740441 TTTTTTTTCTAAATTAATATAAAAAAAT
261 TTTTTTTACTAAATTAATATAAAAAAAT
*
86740469 TAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTAT
1 AAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTAT
* * * * *
86740534 ATTTTAAAAAATAAAATCCAAAAATAAAATAAAAATAAATGGCAAAAATCAGAGTTTTTTACTAA
66 ATTTTAAAAAATAAAATCCGAAAATAAAATAAAAA-AAACGACAAAAATCACAGATTTTTACTAA
86740599 ATTAATATAAAAAACTAAAATAATACATATGAAACATTATGTACTAAAATAATAT-AAAAAATAA
130 ATTAATATAAAAAACTAAAATAATAC--ATGAAACATTATGTACTAAAATAATATAAAAAAATAA
*
86740663 AATACGAAAATAGTATATTTTAAAAAGA-AAAATCTGAAAATAAAATAAAAAAACAAACGGCCAA
193 AATACGAAAATAGTATATTTTAAAAA-ATAAAATCCGAAAAT--AA-AAAAAAA-AAACGGCCAA
86740727 AATCAAAG-TTTTTTACTAAATTAATATAAAAAAAT
253 AATCAAAGTTTTTTTACTAAATTAATATAAAAAAAT
86740762 ACAAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGT
1 --AAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGT
86740827 ATATTTTAAAAAGA-AAAATCCGAAAATAAAATAAA
64 ATATTTTAAAAA-ATAAAATCCGAAAATAAAATAAA
86740862 TACCAAAATA
Statistics
Matches: 363, Mismatches: 17, Indels: 17
0.91 0.04 0.04
Matches are distributed among these distances:
286 91 0.25
288 3 0.01
289 50 0.14
290 47 0.13
291 27 0.07
292 2 0.01
293 32 0.09
294 16 0.04
295 94 0.26
296 1 0.00
ACGTcount: A:0.60, C:0.07, G:0.06, T:0.27
Consensus pattern (288 bp):
AAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGTAT
ATTTTAAAAAATAAAATCCGAAAATAAAATAAAAAAAACGACAAAAATCACAGATTTTTACTAAA
TTAATATAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAAT
ACGAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAAAAAAAAAAAACGGCCAAAATCAAAG
TTTTTTTACTAAATTAATATAAAAAAAT
Found at i:86747398 original size:27 final size:27
Alignment explanation
Indices: 86747356--86747433 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
86747346 AAGGCACCAT
*
86747356 TGGTGCCGCCTATGGGGTACCCTTCA-
1 TGGTGCCGCCTATGGGGTACCCTCCAC
*
86747382 TCGGTGCCGCCTGTGGGGTACCCTCCAC
1 T-GGTGCCGCCTATGGGGTACCCTCCAC
*
86747410 TGGTGTCGCCTATGGGGTACCCTC
1 TGGTGCCGCCTATGGGGTACCCTC
86747434 AACTAATATT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
26 1 0.02
27 44 0.96
28 1 0.02
ACGTcount: A:0.09, C:0.33, G:0.32, T:0.26
Consensus pattern (27 bp):
TGGTGCCGCCTATGGGGTACCCTCCAC
Found at i:86749432 original size:7 final size:8
Alignment explanation
Indices: 86749417--86749447 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
86749407 TTTCTTTTCG
86749417 AAATAAAA
1 AAATAAAA
86749425 AAAT-AAA
1 AAATAAAA
86749432 AAATAAAA
1 AAATAAAA
86749440 AAATAAAA
1 AAATAAAA
86749448 GGGAACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAATAAAA
Found at i:86749437 original size:15 final size:15
Alignment explanation
Indices: 86749417--86749447 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
86749407 TTTCTTTTCG
86749417 AAATAAAAAAATAAA
1 AAATAAAAAAATAAA
86749432 AAATAAAAAAATAAA
1 AAATAAAAAAATAAA
86749447 A
1 A
86749448 GGGAACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (15 bp):
AAATAAAAAAATAAA
Found at i:86762500 original size:44 final size:44
Alignment explanation
Indices: 86762437--86763073 Score: 598
Period size: 44 Copynumber: 14.3 Consensus size: 44
86762427 ATCGTGGCAG
* * * * * *
86762437 ATCTTATCTCCCTAAAGTTGTAGTGGGGCAAATTAAAGCCACAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
* *
86762481 ATCTTATCTCTCTGAAGTTGCAGTGGAGAAGATTAAAGATAGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAA
* * *
86762526 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTAAAGCTATAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
* * **
86762570 ACCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCCGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
* * *
86762614 ATCTTATCTC-CTTGAAGTTGCAGTGGAGCAAATTGAAGATAACAA
1 ATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAA
* * * * * *
86762659 ATCTTGTCTTTCTGAAGTTGTAGTAGAGCAGATTAGAA-CTATAT
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTA-AAGCTACAA
* * * * * * *
86762703 ACCTTATCCCCCTGAAGTTGCAGTGGAGTAGGTTTAAGTTACAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
* * *
86762747 ATCTTATCTC-CTTGAAGTTGCAGTGGAGCAGATTGAAGATAGAAA
1 ATCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAA
* * * *
86762792 ATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
* * * *
86762836 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAA
* * * * * *
86762881 ATATTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGATATAAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAA
* * * *
86762926 ATCTTATCTCTCTGAAGTTGCAATAGAACAGATTAAAGCTATAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
* * * * *
86762970 GTCTTATCT-TCCTGAAGTTGCAGTGAAGCAGATTGAAGATTGCAA
1 ATCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTAAAG-CTACAA
* * *
86763015 ATATTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAA
1 ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
* *
86763059 ACCTTATCTCCCTGA
1 ATCTTATCTCTCTGA
86763074 GCAGGTTGAG
Statistics
Matches: 478, Mismatches: 102, Indels: 26
0.79 0.17 0.04
Matches are distributed among these distances:
43 5 0.01
44 250 0.52
45 219 0.46
46 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
Found at i:86762576 original size:89 final size:89
Alignment explanation
Indices: 86762437--86763073 Score: 622
Period size: 89 Copynumber: 7.2 Consensus size: 89
86762427 ATCGTGGCAG
* * * * ** *
86762437 ATCTTATCTCCCTAAAGTTGTAGTGGGGCAAATTAAAGCCACAAATCTTATCTCTCTGAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATATAAATCTTATCTCTCTGAAGTTGC
*
86762502 AGTGGAGAAGATTAAAGATAGCAA
66 AGTGGAGCAGATTAAAGATAGCAA
* * * * * *
86762526 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTAAAGCTATAAACCTTATCTCTCTAAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATATAAATCTTATCTCTCTGAAGTTGC
**
86762591 AGTGGAGCAGATTAAAG-CCGCAA
66 AGTGGAGCAGATTAAAGATAGCAA
* * * * * *
86762614 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTGAAGATAACAAATCTTGTCTTTCTGAAGTTG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-ATAAATCTTATCTCTCTGAAGTTG
* * * * *
86762679 TAGTAGAGCAGATTAGAA-CTA-TAT
65 CAGTGGAGCAGATTA-AAGATAGCAA
* * * * * * *
86762703 ACCTTATCCCCCTGAAGTTGCAGTGGAGTAGGTTTAAGTTACAAATCTTATCTC-CTTGAAGTTG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATATAAATCTTATCTCTC-TGAAGTTG
* *
86762767 CAGTGGAGCAGATTGAAGATAGAAA
65 CAGTGGAGCAGATTAAAGATAGCAA
** * * * * *
86762792 ATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAAGTCTTATCTCCCTGAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATATAAATCTTATCTCTCTGAAGTTGC
*
86762857 AGTGGAGCAGATTGAAGATAGCAA
66 AGTGGAGCAGATTAAAGATAGCAA
* * *
86762881 ATATTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGATATAAAATCTTATCTCTCTGAAGTTG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAT-AAATCTTATCTCTCTGAAGTTG
* * * * *
86762946 CAATAGAACAGATTAAAGCTA-TAA
65 CAGTGGAGCAGATTAAAGATAGCAA
* * * * *
86762970 GTCTTATCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGAT-TGCAAATATTATCTCTCTGAAGTT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAT--AAATCTTATCTCTCTGAAGTT
* * *
86763034 GCAGTAGAGCAGATTAAAGCTA-TAA
64 GCAGTGGAGCAGATTAAAGATAGCAA
*
86763059 ACCTTATCTCCCTGA
1 ATCTTATCTCCCTGA
86763074 GCAGGTTGAG
Statistics
Matches: 452, Mismatches: 87, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
87 3 0.01
88 72 0.16
89 338 0.75
90 39 0.09
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (89 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATATAAATCTTATCTCTCTGAAGTTGC
AGTGGAGCAGATTAAAGATAGCAA
Found at i:86762677 original size:133 final size:133
Alignment explanation
Indices: 86762439--86763044 Score: 718
Period size: 133 Copynumber: 4.5 Consensus size: 133
86762429 CGTGGCAGAT
* * * * * *
86762439 CTTATCTCCCTAAAGTTGTAGTGGGGCAAATTAAAGCCACAAATCTTATCT-CTCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGCAAATCTTATCTCCT-TGAAGTTGCA
* * * *
86762503 GTGGAG-AAGATTAAAGATAGCAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTAAAGCTA
65 GTGGAGCAA-ATTGAAGATAGAAAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCTA
86762567 TAAAC
129 TAAAC
* * *
86762572 CTTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCCGCAAATCTTATCTCCTTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGCAAATCTTATCTCCTTGAAGTTGCAG
* * * *
86762637 TGGAGCAAATTGAAGATA-ACAAATCTTGTCTTTCTGAAGTTGTAGTAGAGCAGATTAGAA-CTA
66 TGGAGCAAATTGAAGATAGA-AAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTA-AAGCTA
*
86762700 TATAC
129 TAAAC
* * * * **
86762705 CTTATCCCCCTGAAGTTGCAGTGGAGTAGGTTTAAGTTACAAATCTTATCTCCTTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGCAAATCTTATCTCCTTGAAGTTGCAG
* *
86762770 TGGAGCAGATTGAAGATAGAAAATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATA
66 TGGAGCAAATTGAAGATAGAAAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCTATA
**
86762835 AGT
131 AAC
* * * *
86762838 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATATTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TCGCAAATCTTATCTCCTTGAAGTTGCA
* * * *
86762903 ATGGAGCAGATTGAAGATATAAAATCTTATCTCTCTGAAGTTGCAATAGAACAGATTAAAGCTAT
65 GTGGAGCAAATTGAAGATAGAAAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCTAT
**
86762968 AAGT
130 AAAC
* * * * *
86762972 CTTATCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTGCAAATATTATCT-CTCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TCGCAAATCTTATCTCCT-TGAAGTTGC
*
86763036 AGTAGAGCA
64 AGTGGAGCA
86763045 GATTAAAGCT
Statistics
Matches: 417, Mismatches: 48, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
132 2 0.00
133 254 0.61
134 161 0.39
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (133 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGCAAATCTTATCTCCTTGAAGTTGCAG
TGGAGCAAATTGAAGATAGAAAATCTTATCTCTCTGAAGTTGCAATAGAGCAGATTAAAGCTATA
AAC
Found at i:86766257 original size:29 final size:29
Alignment explanation
Indices: 86766224--86766354 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
86766214 TGACGAGATC
*
86766224 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
86766253 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
86766282 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
86766311 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
86766340 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
86766355 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:86774039 original size:29 final size:29
Alignment explanation
Indices: 86774006--86774136 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
86773996 TGACGAGATC
*
86774006 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
86774035 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
86774064 GGCACTAAGTGTGTATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
86774093 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
86774122 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
86774137 AGCTCGGAGG
Statistics
Matches: 88, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:86776432 original size:22 final size:22
Alignment explanation
Indices: 86776406--86776449 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
86776396 GAAAATGATC
*
86776406 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTCATTAT
*
86776428 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
86776450 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:86784775 original size:35 final size:35
Alignment explanation
Indices: 86784708--86784875 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
86784698 TCCTCATTGA
*** *
86784708 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
86784744 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
86784784 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
86784819 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
86784854 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
86784876 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:86784834 original size:75 final size:73
Alignment explanation
Indices: 86784703--86784875 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
86784693 GGTTTTCCTC
*** * * **
86784703 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
86784768 TCAGTATGG
65 TCAGTATGG
*
86784777 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
86784841 ACTCAGTATGG
63 ACTCAGTATGG
86784852 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
86784876 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:86792262 original size:35 final size:35
Alignment explanation
Indices: 86792204--86792370 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
86792194 TCCTCATTGA
** *
86792204 AATACCCATACCTACATTT-TTAACTCGGTATGGGA-
1 AATA-CCATACCTACATTTCACAACTCAGTAT-GGAT
* **
86792239 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
86792279 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
86792314 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
86792349 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
86792371 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
34 14 0.12
35 74 0.63
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:86792310 original size:75 final size:72
Alignment explanation
Indices: 86792199--86792372 Score: 214
Period size: 75 Copynumber: 2.4 Consensus size: 72
86792189 GGTTTTCCTC
* * * **
86792199 ATTGAAATACCCATACCTACATTTTTA-ACTCGGTATGGGA-AATGCCATACCTACATTTCTTAA
1 ATTGAAATA-CCATACCTACA-TTTCACACTCAGTAT-GGATAATACCATACCTACATTTCACAA
86792262 CTCAGTATGG
63 CTCAGTATGG
86792272 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACA-CTCAGTATGGATAATACCATACCTACATTTCACAA
86792337 CTCAGTATGG
63 CTCAGTATGG
86792347 A-TG--ATACCATACCTACATTTCACACT
1 ATTGAAATACCATACCTACATTTCACACT
86792373 TTGCCATGGA
Statistics
Matches: 91, Mismatches: 5, Indels: 14
0.83 0.05 0.13
Matches are distributed among these distances:
69 2 0.02
70 21 0.23
73 7 0.08
74 19 0.21
75 42 0.46
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (72 bp):
ATTGAAATACCATACCTACATTTCACACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGG
Found at i:86799759 original size:35 final size:35
Alignment explanation
Indices: 86799692--86799859 Score: 185
Period size: 35 Copynumber: 4.6 Consensus size: 35
86799682 TCCTCATTGA
*** *
86799692 AATACCATACCTACATTTTTTTAACTCGGTATGGGA-
1 AATACCATACCTACA-TTTCACAACTCAGTAT-GGAT
* **
86799728 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
86799768 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
86799803 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
86799838 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
86799860 CTTTGCCATG
Statistics
Matches: 118, Mismatches: 9, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
35 74 0.63
36 14 0.12
39 3 0.03
40 27 0.23
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:86799818 original size:75 final size:73
Alignment explanation
Indices: 86799687--86799859 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 73
86799677 GGTTTTCCTC
*** * * **
86799687 ATTGAAATACCATACCTACATTTTTTTAACTCGGTATGGGAAATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACA-TTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAAC
86799752 TCAGTATGG
65 TCAGTATGG
*
86799761 ATTTGATAATACCATACCTACATTTCACAGCTCAGTAT-GGATAATACCATACCTACATTTCACA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGGA-AATACCATACCTACATTTCACA
86799825 ACTCAGTATGG
63 ACTCAGTATGG
86799836 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
86799860 CTTTGCCATG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
70 21 0.24
73 2 0.02
74 4 0.05
75 46 0.52
76 15 0.17
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGGAAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:86801709 original size:25 final size:25
Alignment explanation
Indices: 86801651--86801710 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
86801641 TCATAGCTCA
* * * *
86801651 TGTGAGCAATTATAGTTACAGCTTG
1 TGTGAGCATTTACAGTAACAACTTG
86801676 TGTGAGCATTTACAGTAACAACTTG
1 TGTGAGCATTTACAGTAACAACTTG
86801701 TGTGAGCATT
1 TGTGAGCATT
86801711 GTTCTCGCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.35
Consensus pattern (25 bp):
TGTGAGCATTTACAGTAACAACTTG
Found at i:86801866 original size:27 final size:28
Alignment explanation
Indices: 86801835--86801907 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 28
86801825 GTAGATATAC
86801835 AAAATGGTTATATGAATATG-TTATATG
1 AAAATGGTTATATGAATATGTTTATATG
* * * *
86801862 GAAATAGTTATATTAA-GTGTTTATATG
1 AAAATGGTTATATGAATATGTTTATATG
* *
86801889 AAAATGTTTATATGGATAT
1 AAAATGGTTATATGAATAT
86801908 ATATGTAAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
26 2 0.06
27 31 0.91
28 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (28 bp):
AAAATGGTTATATGAATATGTTTATATG
Found at i:86801898 original size:14 final size:13
Alignment explanation
Indices: 86801835--86801902 Score: 57
Period size: 14 Copynumber: 5.0 Consensus size: 13
86801825 GTAGATATAC
86801835 AAAATGGTTATATG
1 AAAAT-GTTATATG
*
86801849 AATATGTTATATG
1 AAAATGTTATATG
*
86801862 GAAATAGTTATAT-
1 AAAAT-GTTATATG
* *
86801875 TAAGTGTTTATATG
1 AAAATG-TTATATG
86801889 AAAATGTTTATATG
1 AAAATG-TTATATG
86801903 GATATATATG
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
12 1 0.02
13 20 0.45
14 23 0.52
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.43
Consensus pattern (13 bp):
AAAATGTTATATG
Found at i:86809096 original size:17 final size:16
Alignment explanation
Indices: 86809074--86809105 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
86809064 ATTTAAAACA
86809074 TTAAAAAAATATCTAAC
1 TTAAAAAAA-ATCTAAC
86809091 TTAAAAAAAATCTAA
1 TTAAAAAAAATCTAA
86809106 ACATCATCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (16 bp):
TTAAAAAAAATCTAAC
Found at i:86811852 original size:63 final size:63
Alignment explanation
Indices: 86811632--86811852 Score: 221
Period size: 67 Copynumber: 3.4 Consensus size: 63
86811622 TAATACGGGA
* *
86811632 TGTATACCATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCCATGGGTGGTACTA
1 TGTACACCATGTGTACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAGGTCCATGGGTGGTACTA
86811697 TG
62 TG
* * * * *
86811699 TGTACACCATGTAG-ACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCCAGG
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATAGAAGTAGCTAGG-TCCATGGGTGGTACTA--
86811763 TG
62 TG
* * ** * *
86811765 AAGGACACCATGTAAACAAGAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATG
1 -TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTC-CATGGGTGGTACTATG
86811829 TGTACACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
86811853 CAAAATTACG
Statistics
Matches: 127, Mismatches: 20, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
63 31 0.24
64 16 0.13
65 2 0.02
66 21 0.17
67 56 0.44
68 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (63 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCCATGGGTGGTACTATG
Found at i:86815497 original size:12 final size:12
Alignment explanation
Indices: 86815480--86815514 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
86815470 TTTATTTAGG
86815480 AAAGATGATATA
1 AAAGATGATATA
86815492 AAAGATGATATA
1 AAAGATGATATA
86815504 AAAGATGATAT
1 AAAGATGATAT
86815515 TTTCTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.26
Consensus pattern (12 bp):
AAAGATGATATA
Found at i:86816834 original size:28 final size:29
Alignment explanation
Indices: 86816802--86816861 Score: 113
Period size: 28 Copynumber: 2.1 Consensus size: 29
86816792 ATCTGACGTG
86816802 TTAGTCAGTAAATATTAATCATTTAAT-T
1 TTAGTCAGTAAATATTAATCATTTAATAT
86816830 TTAGTCAGTAAATATTAATCATTTAATAT
1 TTAGTCAGTAAATATTAATCATTTAATAT
86816859 TTA
1 TTA
86816862 CGAGGTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 27 0.87
29 4 0.13
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (29 bp):
TTAGTCAGTAAATATTAATCATTTAATAT
Found at i:86816859 original size:14 final size:14
Alignment explanation
Indices: 86816812--86816859 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
86816802 TTAGTCAGTA
86816812 AATATTAATCATTT
1 AATATTAATCATTT
* * * *
86816826 AATTTTAGTCAGTA
1 AATATTAATCATTT
86816840 AATATTAATCATTT
1 AATATTAATCATTT
86816854 AATATT
1 AATATT
86816860 TACGAGGTCA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (14 bp):
AATATTAATCATTT
Found at i:86820719 original size:20 final size:18
Alignment explanation
Indices: 86820694--86820730 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
86820684 ATTGCTAAGT
86820694 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
86820714 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
86820731 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:86824041 original size:46 final size:45
Alignment explanation
Indices: 86823990--86824154 Score: 208
Period size: 46 Copynumber: 3.6 Consensus size: 45
86823980 CGAGGGCTAG
*
86823990 TGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGATAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACGAG-ATG-TAGCCAA
* * *
86824036 TGTAAGACATGTTTGGGACATGCATTAGCCTCGAGATGTTAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACGAGATG-TAGCCAA
* * * *
86824082 TGTCAGACATGTCTGGGACATGCGTCAGCTACGAGATGT-GCTAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTAGCCAA
*
86824126 TGTAAGACATGTCTGGGACATGCGTCAGC
1 TGTAAGACATGTCTGGGACATGCATCAGC
86824155 ATGGTTACAT
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.30
45 1 0.01
46 70 0.67
47 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACGAGATGTAGCCAA
Found at i:86824173 original size:90 final size:92
Alignment explanation
Indices: 86823990--86824191 Score: 225
Period size: 90 Copynumber: 2.2 Consensus size: 92
86823980 CGAGGGCTAG
* *
86823990 TGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGATAGCCAGTGTAAGACATGTTTGGGAC
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGATAGCCAATGTAAGACATGTCTGGGAC
* * *
86824055 ATGCATTAGCCTCGAGATGTTAGCCAA
66 ATGCATCAGCATCGACATGTTAGCCAA
* * * *
86824082 TGTCAGACATGTCTGGGACATGCGTCAGCTACGAG-ATG-T-GCTAATGTAAGACATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGATAGCCAATGTAAGACATGTCTGGGA
* * *
86824144 CATGCGTCAGCATGGTTACATG-T-GTCAA
65 CATGCATCAGCATCG--ACATGTTAGCCAA
*
86824172 TGTAAGACCTGTCTGGGACA
1 TGTAAGACATGTCTGGGACA
86824192 CGGCATCGAC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
90 53 0.57
91 2 0.02
92 36 0.39
93 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (92 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGATAGCCAATGTAAGACATGTCTGGGAC
ATGCATCAGCATCGACATGTTAGCCAA
Found at i:86824185 original size:46 final size:43
Alignment explanation
Indices: 86823990--86824191 Score: 158
Period size: 46 Copynumber: 4.5 Consensus size: 43
86823980 CGAGGGCTAG
* * * *
86823990 TGTAAGACATGTCTGGGACATGCATCAGCCAC-AGTATGATAGCCAG
1 TGTAAGACATGTCTGGGACATGCGTCAGCTACGA-CATG-T-G-CAA
* * * *
86824036 TGTAAGACATGTTTGGGACATGCATTAGCCT-CGAGATGTTAGCCAA
1 TGTAAGACATGTCTGGGACATGCGTCAG-CTACGACATG-T-G-CAA
* *
86824082 TGTCAGACATGTCTGGGACATGCGTCAGCTACGAGATGTGCTAA
1 TGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGC-AA
*
86824126 TGTAAGACATGTCTGGGACATGCGTCAGC-ATGGTTACATGTGTCAA
1 TGTAAGACATGTCTGGGACATGCGTCAGCTA-CG--ACATGTG-CAA
*
86824172 TGTAAGACCTGTCTGGGACA
1 TGTAAGACATGTCTGGGACA
86824192 CGGCATCGAC
Statistics
Matches: 134, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
43 2 0.01
44 32 0.24
45 3 0.02
46 94 0.70
47 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (43 bp):
TGTAAGACATGTCTGGGACATGCGTCAGCTACGACATGTGCAA
Found at i:86831785 original size:15 final size:14
Alignment explanation
Indices: 86831760--86831809 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 14
86831750 GAGTCCATAG
86831760 GTATGTATCCACCAA
1 GTATG-ATCCACCAA
86831775 GTATGAGTCCA-CAA
1 GTATGA-TCCACCAA
*
86831789 ATATGTATCCACCAA
1 GTATG-ATCCACCAA
86831804 GTATGA
1 GTATGA
86831810 ATCTGCAGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
14 13 0.43
15 17 0.57
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (14 bp):
GTATGATCCACCAA
Found at i:86831793 original size:29 final size:29
Alignment explanation
Indices: 86831747--86831832 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 29
86831737 GGTTGTTACA
*
86831747 TATGAGTCCATAGGTATGTATCCACCAAG
1 TATGAGTCCACAGGTATGTATCCACCAAG
**
86831776 TATGAGTCCACAAATATGTATCCACCAAG
1 TATGAGTCCACAGGTATGTATCCACCAAG
* **
86831805 TATGAATCTGCAGGTATGTATCCACCAA
1 TATGAGTCCACAGGTATGTATCCACCAA
86831833 ATGTGAGCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
TATGAGTCCACAGGTATGTATCCACCAAG
Found at i:86834672 original size:16 final size:16
Alignment explanation
Indices: 86834637--86834677 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
86834627 TGAACTGATG
86834637 ATATGCGAA-CCACCT
1 ATATGCGAACCCACCT
**
86834652 ATATGCGAACCCATTT
1 ATATGCGAACCCACCT
86834668 ATATGCGAAC
1 ATATGCGAAC
86834678 TGTTATATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (16 bp):
ATATGCGAACCCACCT
Found at i:86843162 original size:29 final size:29
Alignment explanation
Indices: 86843120--86843207 Score: 167
Period size: 29 Copynumber: 3.0 Consensus size: 29
86843110 TAATGAAATA
86843120 AAATGAGAAAATGAAGGCAAAAATCAGCC
1 AAATGAGAAAATGAAGGCAAAAATCAGCC
86843149 AAATGAGAAAATGAAGGCAAAAATCAGCC
1 AAATGAGAAAATGAAGGCAAAAATCAGCC
*
86843178 AAATAAGAAAATGAAGGCAAAAATCAGCC
1 AAATGAGAAAATGAAGGCAAAAATCAGCC
86843207 A
1 A
86843208 TTCTTCTCCC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.57, C:0.14, G:0.19, T:0.10
Consensus pattern (29 bp):
AAATGAGAAAATGAAGGCAAAAATCAGCC
Found at i:86847248 original size:47 final size:45
Alignment explanation
Indices: 86847098--86847406 Score: 189
Period size: 47 Copynumber: 6.6 Consensus size: 45
86847088 TTACTTGTGT
* * *
86847098 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCATAATATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TGAGATGATA
**
86847144 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGAATGAGTA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCT-GAG-ATGA-TA
* **
86847194 -CTAGTGTAAGACATGTCTAAGACATGCATCGGCCTCGACGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-GA-GATGATA
* *
86847240 GCCAGTGTAAAACATGTCTGGGACACT-CATCGG-CTAAGAGTTG-T-
1 GCCAGTGTAAGACATGTCTGGGACA-TGCATCGGCCT--GAGATGATA
* * * * * * * * *
86847284 GCTAGTGTAAGACATATCTAGGACATGAATCAGCGTATAGACGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGATGATA
* * * **
86847330 GCTAGTATAAGACCATGTCCGGGACATGGCATCAACCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCT-GA-GATGATA
*
86847379 GCTAGTGTAAGACCATGT-TCGGGACATG
1 GCCAGTGTAAGA-CATGTCT-GGGACATG
86847407 GCATTGGCAA
Statistics
Matches: 205, Mismatches: 41, Indels: 32
0.74 0.15 0.12
Matches are distributed among these distances:
43 1 0.00
44 29 0.14
45 2 0.01
46 30 0.15
47 68 0.33
48 30 0.15
49 43 0.21
50 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGATGATA
Found at i:86854357 original size:47 final size:45
Alignment explanation
Indices: 86854291--86854442 Score: 178
Period size: 47 Copynumber: 3.2 Consensus size: 45
86854281 TTACTTGTGT
*
86854291 GCCAATGTAAGACATGTCTGGGACATGCATCGGCCACAATATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAA-ATGATA
* * **
86854337 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGAATGAGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACA-AATGATA
* *
86854386 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-AATGATA
86854433 GCCAGTGTAA
1 GCCAGTGTAA
86854443 AGCGTGTCTA
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
46 11 0.12
47 37 0.42
48 22 0.25
49 18 0.20
50 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAATGATA
Found at i:86854451 original size:47 final size:46
Alignment explanation
Indices: 86854303--86854463 Score: 171
Period size: 47 Copynumber: 3.4 Consensus size: 46
86854293 CAATGTAAGA
* * * *
86854303 CATGTCTGGGACATGCATCGGCCACAATATGATAGCCAGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTAA-AG
* * **
86854350 CATGTCTGGGACATGGCATCGGCGTAGAGAATGAGCGCCAGTGT-AAG
1 CATGTCTGGGACAT-GCATCGGCCTCGAG-ATGATAGCCAGTGTAAAG
86854397 ACATGTCTGGGACATGCATCGGCCTCGACGATGATAGCCAGTGTAAAG
1 -CATGTCTGGGACATGCATCGGCCTCGA-GATGATAGCCAGTGTAAAG
* * *
86854445 CGTGTCTAGGACACGCATC
1 CATGTCTGGGACATGCATC
86854464 CGCTAAGATT
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
47 54 0.57
48 28 0.30
49 12 0.13
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (46 bp):
CATGTCTGGGACATGCATCGGCCTCGAGATGATAGCCAGTGTAAAG
Found at i:86861502 original size:39 final size:38
Alignment explanation
Indices: 86861371--86861512 Score: 187
Period size: 38 Copynumber: 3.7 Consensus size: 38
86861361 TGTTAAAGCG
* *
86861371 GCACGAAGCCTACTAAGCATC-AAGCCCGATAAACACCG
1 GCACGAAGCCTACTAGGC-TCAAAGCCCGATAAACACCA
* *
86861409 GCACGAAGCCTGCTAGGCTCAAAGCCCAATAAACACCA
1 GCACGAAGCCTACTAGGCTCAAAGCCCGATAAACACCA
* * *
86861447 GCACGAATCCTGCTAGGCTCAAAGCCCGATAAGTCACCA
1 GCACGAAGCCTACTAGGCTCAAAGCCCGATAA-ACACCA
*
86861486 GCACGAGGCCTACTAGGCTCAAAGCCC
1 GCACGAAGCCTACTAGGCTCAAAGCCC
86861513 AATACAATAC
Statistics
Matches: 92, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
37 2 0.02
38 61 0.66
39 29 0.32
ACGTcount: A:0.33, C:0.35, G:0.20, T:0.12
Consensus pattern (38 bp):
GCACGAAGCCTACTAGGCTCAAAGCCCGATAAACACCA
Found at i:86861573 original size:41 final size:41
Alignment explanation
Indices: 86861493--86861573 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
86861483 CCAGCACGAG
* * *
86861493 GCCTACTAGGCTCAAAGCCCAATACAATACACTGGCATAAA
1 GCCTACTAGGCCCAAAGCCCAATACAATACACCGCCATAAA
*
86861534 GCCTACTAGGCCCAAGGCCCAATACAATACACCGCCATAA
1 GCCTACTAGGCCCAAAGCCCAATACAATACACCGCCATAA
86861574 CAACTCAGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.37, C:0.33, G:0.15, T:0.15
Consensus pattern (41 bp):
GCCTACTAGGCCCAAAGCCCAATACAATACACCGCCATAAA
Found at i:86869635 original size:40 final size:40
Alignment explanation
Indices: 86869591--86869686 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
86869581 ACTATGTTTG
* **
86869591 GCACTTAATGTGCGTTTCGAGAA-AGCTTCGGCTATATAAA
1 GCACTTAGTGTGCGAATCG-GAATAGCTTCGGCTATATAAA
* * * *
86869631 GCACTTAGTGTGTGAATCGGAATAGCTTTGGTTATATATA
1 GCACTTAGTGTGCGAATCGGAATAGCTTCGGCTATATAAA
86869671 GCACTTAGTGTGCGAA
1 GCACTTAGTGTGCGAA
86869687 ACTGAAATAG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.06
40 44 0.94
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATCGGAATAGCTTCGGCTATATAAA
Found at i:86869778 original size:42 final size:42
Alignment explanation
Indices: 86869671--86869810 Score: 153
Period size: 42 Copynumber: 3.4 Consensus size: 42
86869661 GTTATATATA
* ***
86869671 GCACTTAGTGTGCGAAACTGA-AATAG-TTCTGGCTATG-AAAG
1 GCACTTAGTGTGCGAAA-TTATAATAGCTTC-GGCTATGCTTTG
* * *
86869712 GAACTTAGCGTGC-AAGATTATAATAGCTTTGGCTATGCTTTG
1 GCACTTAGTGTGCGAA-ATTATAATAGCTTCGGCTATGCTTTG
*
86869754 GCATTTAGTGTGCGAAATTATAATAGCTTCGGCTATGCTTTG
1 GCACTTAGTGTGCGAAATTATAATAGCTTCGGCTATGCTTTG
86869796 GCACTTAGTGTGCGA
1 GCACTTAGTGTGCGA
86869811 GATATCGAGT
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
40 4 0.05
41 24 0.29
42 52 0.63
43 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
GCACTTAGTGTGCGAAATTATAATAGCTTCGGCTATGCTTTG
Found at i:86881966 original size:12 final size:12
Alignment explanation
Indices: 86881949--86882000 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
86881939 AAACTTAATC
86881949 AATTTAATATTA
1 AATTTAATATTA
*
86881961 AATTTAATCTATA
1 AATTTAATAT-TA
86881974 AATATT-ATATTA
1 AAT-TTAATATTA
*
86881986 AACTTAATATTA
1 AATTTAATATTA
86881998 AAT
1 AAT
86882001 ATTATTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 2 0.06
12 21 0.64
13 8 0.24
14 2 0.06
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (12 bp):
AATTTAATATTA
Found at i:86881983 original size:25 final size:24
Alignment explanation
Indices: 86881955--86882005 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
86881945 AATCAATTTA
* *
86881955 ATATTAAATTTAATCTATAAATATT
1 ATATTAAACTTAATAT-TAAATATT
86881980 ATATTAAACTTAATATTAAATATT
1 ATATTAAACTTAATATTAAATATT
86882004 AT
1 AT
86882006 TAAAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
ATATTAAACTTAATATTAAATATT
Found at i:86882578 original size:15 final size:15
Alignment explanation
Indices: 86882558--86882587 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86882548 AAATATCATA
86882558 TTAATTTTAATTGAT
1 TTAATTTTAATTGAT
*
86882573 TTAATTTTACTTGAT
1 TTAATTTTAATTGAT
86882588 CAAAATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (15 bp):
TTAATTTTAATTGAT
Found at i:86884459 original size:16 final size:17
Alignment explanation
Indices: 86884428--86884460 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86884418 TAAACCCTTT
86884428 CAAAATACCTTAAACCC
1 CAAAATACCTTAAACCC
*
86884445 CAAAATTCC-TAAACCC
1 CAAAATACCTTAAACCC
86884461 TAACCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (17 bp):
CAAAATACCTTAAACCC
Found at i:86884923 original size:10 final size:10
Alignment explanation
Indices: 86884908--86884937 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
86884898 ATTTTACAAA
86884908 AATAAATAAT
1 AATAAATAAT
86884918 AATAAATAAT
1 AATAAATAAT
86884928 AAT-AATAAT
1 AATAAATAAT
86884937 A
1 A
86884938 GGGGGAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.35
10 13 0.65
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AATAAATAAT
Found at i:86884930 original size:13 final size:14
Alignment explanation
Indices: 86884907--86884935 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
86884897 TATTTTACAA
86884907 AAATAAATAATAAT
1 AAATAAATAATAAT
86884921 AAAT-AATAATAAT
1 AAATAAATAATAAT
86884934 AA
1 AA
86884936 TAGGGGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAATAAATAATAAT
Found at i:86885512 original size:6 final size:6
Alignment explanation
Indices: 86885495--86885524 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
86885485 CACCACCATC
*
86885495 ATCATG AGCATG ATCATG ATCATG ATCATG
1 ATCATG ATCATG ATCATG ATCATG ATCATG
86885525 GCCATGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (6 bp):
ATCATG
Found at i:86885512 original size:12 final size:12
Alignment explanation
Indices: 86885495--86885537 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
86885485 CACCACCATC
86885495 ATCATGAGCATG
1 ATCATGAGCATG
*
86885507 ATCATGATCATG
1 ATCATGAGCATG
86885519 ATCATG-GCCATG
1 ATCATGAG-CATG
*
86885531 ACCATGA
1 ATCATGA
86885538 CCATCACCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (12 bp):
ATCATGAGCATG
Found at i:86885530 original size:18 final size:18
Alignment explanation
Indices: 86885489--86885537 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
86885479 CACGAACACC
*
86885489 ACCATCATCATGAGCATG
1 ACCATGATCATGAGCATG
* *
86885507 ATCATGATCATGATCATG
1 ACCATGATCATGAGCATG
* *
86885525 GCCATGACCATGA
1 ACCATGATCATGA
86885538 CCATCACCAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (18 bp):
ACCATGATCATGAGCATG
Found at i:86885550 original size:3 final size:3
Alignment explanation
Indices: 86885537--86885582 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
86885527 CATGACCATG
*
86885537 ACC ATC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC A
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC A
86885583 TCATGGTTCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.35, C:0.63, G:0.00, T:0.02
Consensus pattern (3 bp):
ACC
Found at i:86894822 original size:5 final size:5
Alignment explanation
Indices: 86894814--86894842 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
86894804 CTTTTGCAAT
86894814 ATTTC ATTTC ATTTC ATTTC ATTTC ATTT
1 ATTTC ATTTC ATTTC ATTTC ATTTC ATTT
86894843 TTAAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (5 bp):
ATTTC
Found at i:86896346 original size:28 final size:30
Alignment explanation
Indices: 86896292--86896352 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
86896282 ATGCTTTAAT
**
86896292 TTTATATTGAAGTTTCTCACTTTATTTT-A
1 TTTATATTGAAGTTTCTCACTAAATTTTGA
*
86896321 TTTA-ATTGAAGTTTGTCACTAAATTTTGA
1 TTTATATTGAAGTTTCTCACTAAATTTTGA
86896350 TTT
1 TTT
86896353 TTTTTTATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 20 0.71
29 8 0.29
ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56
Consensus pattern (30 bp):
TTTATATTGAAGTTTCTCACTAAATTTTGA
Found at i:86903222 original size:20 final size:19
Alignment explanation
Indices: 86903177--86903222 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
86903167 AATTGATGAT
*
86903177 AATAGTTTATGTTTTTTAA
1 AATATTTTATGTTTTTTAA
*
86903196 ATTTATTTTATGTTTTTTATA
1 A-ATATTTTATGTTTTTTA-A
86903217 AATATT
1 AATATT
86903223 ATAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 19 0.86
21 2 0.09
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (19 bp):
AATATTTTATGTTTTTTAA
Found at i:86906764 original size:177 final size:177
Alignment explanation
Indices: 86906531--86907373 Score: 1093
Period size: 177 Copynumber: 4.8 Consensus size: 177
86906521 GACAAAGCCA
* * * *
86906531 GTGGCTAAAATCTGCTCCATAACCGATACATGGAGATAAGACTCACCATCTTCGATCTGCTCCAC
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCAT
*
86906596 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAAA
66 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGA
* * * *
86906661 CTTGCATCTTCAATCTGCTCTATTGCTACCTTAGAGAGATAAGGTTG
131 CTTGCATATTCAACCTGCTCCATTGCTACCTTAGAGAGATAAGGCTG
* *
86906708 GTGGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCTAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCAT
* * * *
86906773 AGCCGATACATGGAGATAAAATCTGTAATTTTCAGTCTGCTTCCTGCAACTTTAGGAAAATTAGA
66 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGA
* * * *
86906838 CTTGCATATTGAGCCTGCTCCACTGC-AACTTCAGAGAGATAAGGCTG
131 CTTGCATATTCAACCTGCTCCATTGCTACCTT-AGAGAGATAAGGCTG
* * * * *
86906885 GTGGCTAAAATCTACTCTATAGCCGATACATGGAGATAAGACTTGTCATTTTTGATCTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCAT
*
86906950 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
66 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGA
* * * *
86907015 CTTGCATATTGAGCCTGCTCCCTTGCTACCTTAGAGAGATAAGGTTG
131 CTTGCATATTCAACCTGCTCCATTGCTACCTTAGAGAGATAAGGCTG
* * *
86907062 GTGGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCAT
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCAT
* * * * * * * *
86907127 AGCCGATACATAGAGATAAGATCTGTAATTTTTAGCCTG-TTACCATACTACTTAAGG-GGTTAA
66 AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTT-CC-TGCAACTTCAGGAAGATAA
* * * * * * * *
86907190 GGCTCGTATCTTCAACCTGCTCTC-TTGCTACCTCAAAGAGATAAGACCG
129 GACTTGCATATTCAACCTGCTC-CATTGCTACCTTAGAGAGATAAGGCTG
* * * *
86907239 GTGGTTAAGATCTGTTCCATAGCCGATACATGGAGATAAGACTCACCA-TTTCTGATCTGCTCCA
1 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTC-GATCTGCTCCA
* * * *
86907303 TAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAA
65 TAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCC-TGCAACTTCAGGAAGATAA
86907368 GACTTG
129 GACTTG
86907374 TGAATTCACC
Statistics
Matches: 575, Mismatches: 83, Indels: 15
0.85 0.12 0.02
Matches are distributed among these distances:
176 9 0.02
177 543 0.94
178 23 0.04
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (177 bp):
GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTCGATCTGCTCCAT
AGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGA
CTTGCATATTCAACCTGCTCCATTGCTACCTTAGAGAGATAAGGCTG
Found at i:86906804 original size:45 final size:44
Alignment explanation
Indices: 86906717--86906813 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 44
86906707 GGTGGCTAAA
* * *
86906717 ATCTGCTCCATAGCTGATACATGGAGATAAGACTCGCCATTTTC
1 ATCTGCTCCATAGCCGATACATGGAGATAAAACTCGCAATTTTC
* *
86906761 GATCTGCTCTATAGCCGATACATGGAGATAAAA-TCTGTAATTTTC
1 -ATCTGCTCCATAGCCGATACATGGAGATAAAACTC-GCAATTTTC
86906806 AGTCTGCT
1 A-TCTGCT
86906814 TCCTGCAACT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
44 3 0.07
45 42 0.93
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAAACTCGCAATTTTC
Found at i:86906981 original size:45 final size:45
Alignment explanation
Indices: 86906894--86906981 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
86906884 GGTGGCTAAA
* *
86906894 ATCTACTCTATAGCCGATACATGGAGATAAGACTTGTCATTTTTG
1 ATCTACTCCATAGCCGATACATGGAGATAAGACTTGTAATTTTTG
*
86906939 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTGTAATTTT
1 ATCTACTCCATAGCCGATACATGGAGATAAGACT-TGTAATTTT
86906982 CAGTCTGCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (45 bp):
ATCTACTCCATAGCCGATACATGGAGATAAGACTTGTAATTTTTG
Found at i:86907118 original size:354 final size:354
Alignment explanation
Indices: 86906492--86907373 Score: 1214
Period size: 354 Copynumber: 2.5 Consensus size: 354
86906482 GGTTTGTGAC
* * * * *
86906492 TTCAACCTGCTCCACTGCAACTTCAGGGAGACAAAGCCAGTGGCTAAAATCTGCTCCATAACCGA
1 TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGA
* * *
86906557 TACATGGAGATAAGACTCACCATCTTCGATCTGCTCCACAGCCGATACATGGAGATAAGATCTGT
66 TACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
* * * *
86906622 AATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAAACTTGCATCTTCAATCTGCTCTATTGC
131 AATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCATATTCAACCTGCTCCATTGC
86906687 TACCTTAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGACTC
196 TACCTTAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGACTC
* * * *
86906752 GCCATTTTCGATCTGCTCTATAGCCGATACATGGAGATAAAATCTGTAATTTTCAGTCTGCTT-C
261 GCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGCCTG-TTAC
* * *
86906816 C-TGCAACTTTAGGAAAATT-AGACTTGCATA
325 CATACAACTTAAGG--AATTAAGACTCGCATA
* * * * *
86906846 TTGAGCCTGCTCCACTGCAACTTCAGAGAGATAAGGCTGGTGGCTAAAATCTACTCTATAGCCGA
1 TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGA
***
86906911 TACATGGAGATAAGACTTGTCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
66 TACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
* * * *
86906976 AATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTTGCATATTGAGCCTGCTCCCTTGC
131 AATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCATATTCAACCTGCTCCATTGC
*
86907041 TACCTTAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGATTC
196 TACCTTAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGACTC
* *
86907106 GCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAGATCTGTAATTTTTAGCCTGTTACC
261 GCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGCCTGTTACC
* ** * * *
86907171 ATACTACTTAAGGGGTTAAGGCTCGTATC
326 ATACAACTTAAGGAATTAAGACTCGCATA
* * * * * * * *
86907200 TTCAACCTGCTCTC-TTGCTACCTCAAAGAGATAAGACCGGTGGTTAAGATCTGTTCCATAGCCG
1 TTCAACCTGCTC-CACTGCAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCG
* *
86907264 ATACATGGAGATAAGACTCACCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTG
65 ATACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTG
* * *
86907329 TAATTTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTTG
130 TAATTTTCAGTCTGCTTCC-TGCAACTTCAGGAAGATAAGACTTG
86907374 TGAATTCACC
Statistics
Matches: 461, Mismatches: 62, Indels: 9
0.87 0.12 0.02
Matches are distributed among these distances:
353 4 0.01
354 425 0.92
355 32 0.07
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (354 bp):
TTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGGCCGGTGGCTAAAATCTGCTCCATAGCCGA
TACATGGAGATAAGACTCACCATTTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGT
AATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCATATTCAACCTGCTCCATTGC
TACCTTAGAGAGATAAGGTTGGTGGCTAAAATCTGCTCCATAGCTGATACATGGAGATAAGACTC
GCCATCTTCGATCTGCTCCATAGCCGATACATAGAGATAAAATCTGTAATTTTCAGCCTGTTACC
ATACAACTTAAGGAATTAAGACTCGCATA
Found at i:86909159 original size:6 final size:6
Alignment explanation
Indices: 86909113--86909138 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
86909103 TCTCTTTTTG
86909113 TTGTTT TTGTTT TTGTTT TTGTTT TT
1 TTGTTT TTGTTT TTGTTT TTGTTT TT
86909139 TCTTTCCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTGTTT
Found at i:86910169 original size:5 final size:5
Alignment explanation
Indices: 86910159--86910185 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
86910149 TGAGCATTCG
86910159 ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA AT
86910186 AAAAAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:86910301 original size:26 final size:26
Alignment explanation
Indices: 86910253--86910302 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
86910243 TGAAATTTTC
* *
86910253 TCGAATCGAGTCGAGTGAGATATAAT
1 TCGAATCGAATCGAATGAGATATAAT
86910279 TCGAATCGAATCGAATCGA-ATATA
1 TCGAATCGAATCGAAT-GAGATATA
86910303 TTTATTCGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATATAAT
Found at i:86914626 original size:23 final size:24
Alignment explanation
Indices: 86914600--86914648 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
86914590 GCAAAACAGA
* *
86914600 GTAA-GGTTTTGTGGAAATGGGGG
1 GTAAGGGTTTCGTGGAAATAGGGG
*
86914623 GTAAGGGTTTCGTGGGAATAGGGG
1 GTAAGGGTTTCGTGGAAATAGGGG
86914647 GT
1 GT
86914649 TTGAATAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.20, C:0.02, G:0.49, T:0.29
Consensus pattern (24 bp):
GTAAGGGTTTCGTGGAAATAGGGG
Found at i:86919388 original size:17 final size:17
Alignment explanation
Indices: 86919362--86919395 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86919352 AAAAATTTCT
*
86919362 CCCTTTCTACTCTGCTA
1 CCCTTCCTACTCTGCTA
86919379 CCCTTCCTACTCTGCTA
1 CCCTTCCTACTCTGCTA
86919396 GAGCACAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.44, G:0.06, T:0.38
Consensus pattern (17 bp):
CCCTTCCTACTCTGCTA
Found at i:86922006 original size:14 final size:14
Alignment explanation
Indices: 86921987--86922015 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86921977 TGAAACAAAC
86921987 TTTGTAATATAAAT
1 TTTGTAATATAAAT
86922001 TTTGTAATATAAAT
1 TTTGTAATATAAAT
86922015 T
1 T
86922016 AAATATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTGTAATATAAAT
Found at i:86923155 original size:18 final size:18
Alignment explanation
Indices: 86923132--86923168 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86923122 AATAATGTGG
* *
86923132 TGTTTTAGTATATTTTAA
1 TGTTTTAATATATTGTAA
86923150 TGTTTTAATATATTGTAA
1 TGTTTTAATATATTGTAA
86923168 T
1 T
86923169 AAATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (18 bp):
TGTTTTAATATATTGTAA
Found at i:86923437 original size:42 final size:43
Alignment explanation
Indices: 86923357--86923442 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 43
86923347 AACTAAGATG
* * * * *
86923357 TCCGAACTCATTGAGTGGTCCGGGTTCGTGAGATATGCG-GCA
1 TCCGAACCCATTGAGAGGTCCGAGTTCATGAGAGATGCGAGCA
* *
86923399 TCCGAACCCATTGAGAGGTCCGAGTTCATTATAGATGCGAGCA
1 TCCGAACCCATTGAGAGGTCCGAGTTCATGAGAGATGCGAGCA
86923442 T
1 T
86923443 TTGAGCTCGT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 32 0.89
43 4 0.11
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (43 bp):
TCCGAACCCATTGAGAGGTCCGAGTTCATGAGAGATGCGAGCA
Found at i:86923467 original size:43 final size:43
Alignment explanation
Indices: 86923409--86923623 Score: 162
Period size: 51 Copynumber: 4.6 Consensus size: 43
86923399 TCCGAACCCA
*
86923409 TTGAGAGGTCCGAGTTCATTATAGATGCGAGCATTTGAGCTCG
1 TTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCG
* * *
86923452 TTAAGAGGTCTGAGTTCA-TAGTGGATGCGATTCATGTAACATCCGAGCTCG
1 TTGAGAGGTCCGAGTTCATTA-TGGATGCGA-GCAT-T----T--GAGCTCG
* * *
86923503 TTGAGAGGCCCGAGTTCATTATGGATGTGAGCATTCGAGCTCG
1 TTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCG
* * * * *
86923546 TTGAGAGGTCCGAGTTTATAATGGATGTGATTCATATAATATCCGAGCTCA
1 TTGAGAGGTCCGAGTTCATTATGGATGCGA-GC--AT--T-T--GAGCTCG
86923597 TTGAGAGGTCCGAGTTCATTATGGATG
1 TTGAGAGGTCCGAGTTCATTATGGATG
86923624 TCTTACATGT
Statistics
Matches: 136, Mismatches: 18, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.01
43 58 0.43
44 4 0.03
45 1 0.01
46 2 0.01
48 1 0.01
49 2 0.01
50 3 0.02
51 61 0.45
52 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
TTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTTGAGCTCG
Found at i:86923521 original size:51 final size:49
Alignment explanation
Indices: 86923445--86923623 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 49
86923435 GCGAGCATTT
* *
86923445 GAGCTCGTTAAGAGGTCTGAGTTCATAGTGGATGCGATTCATGTAACATCC
1 GAGCTCGTTGAGAGGTCCGAGTTCATA-TGGATG-GATTCATGTAACATCC
* * * *
86923496 GAGCTCGTTGAGAGGCCCGAGTTCAT-T--ATGGA-T-GTG-AGCATTC
1 GAGCTCGTTGAGAGGTCCGAGTTCATATGGATGGATTCATGTAACATCC
* * *
86923539 GAGCTCGTTGAGAGGTCCGAGTTTATAATGGATGTGATTCATATAATATCC
1 GAGCTCGTTGAGAGGTCCGAGTTCAT-ATGGATG-GATTCATGTAACATCC
*
86923590 GAGCTCATTGAGAGGTCCGAGTTCATTATGGATG
1 GAGCTCGTTGAGAGGTCCGAGTTCA-TATGGATG
86923624 TCTTACATGT
Statistics
Matches: 104, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 29 0.28
44 2 0.02
45 2 0.02
46 2 0.02
47 6 0.06
48 2 0.02
49 2 0.02
50 1 0.01
51 57 0.55
52 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (49 bp):
GAGCTCGTTGAGAGGTCCGAGTTCATATGGATGGATTCATGTAACATCC
Found at i:86923535 original size:94 final size:94
Alignment explanation
Indices: 86923397--86923624 Score: 330
Period size: 94 Copynumber: 2.4 Consensus size: 94
86923387 AGATATGCGG
* * * * *
86923397 CATCCGAACCCATTGAGAGGTCCGAGTTCATTATAGATGCGAGCATTTGAGCTCGTTAAGAGGTC
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGTGAGCATTCGAGCTCGTTAAGAGGTC
* * *
86923462 TGAGTTCATAGTGGATGCGATTCATGTAA
66 CGAGTTCATAATGGATGCGATTCATATAA
* * *
86923491 CATCCGAGCTCGTTGAGAGGCCCGAGTTCATTATGGATGTGAGCATTCGAGCTCGTTGAGAGGTC
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGTGAGCATTCGAGCTCGTTAAGAGGTC
* *
86923556 CGAGTTTATAATGGATGTGATTCATATAA
66 CGAGTTCATAATGGATGCGATTCATATAA
*
86923585 TATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGT
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGT
86923625 CTTACATGTT
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 118 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (94 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGTGAGCATTCGAGCTCGTTAAGAGGTC
CGAGTTCATAATGGATGCGATTCATATAA
Found at i:86928591 original size:27 final size:27
Alignment explanation
Indices: 86928531--86928602 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
86928521 AATGGGACTG
* * *
86928531 GTGCCACCTATTAGATA-AGGTCACCA
1 GTGCCGCCTATCAGATAGGGGTCACCA
*
86928557 GTGCCGCCTATCAGATAGGGGTCACTA
1 GTGCCGCCTATCAGATAGGGGTCACCA
*
86928584 GTGTCGCCTATCAGATAGG
1 GTGCCGCCTATCAGATAGG
86928603 CACCATACCT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 15 0.38
27 25 0.62
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (27 bp):
GTGCCGCCTATCAGATAGGGGTCACCA
Found at i:86930475 original size:13 final size:15
Alignment explanation
Indices: 86930447--86930475 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86930437 ATTCGAATTT
86930447 AAATATATTATAAAA
1 AAATATATTATAAAA
86930462 AAATATATT-TAAAA
1 AAATATATTATAAAA
86930476 TTTCAAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATATATTATAAAA
Found at i:86933287 original size:2 final size:2
Alignment explanation
Indices: 86933280--86933318 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
86933270 CCTAACTTAC
86933280 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86933319 TTAAAACAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:86941064 original size:52 final size:51
Alignment explanation
Indices: 86940913--86941076 Score: 184
Period size: 52 Copynumber: 3.1 Consensus size: 51
86940903 ATTAGTATCT
*
86940913 AAAAAAATTTGGGTTTTTGCTTTGTGGTGGCCGACACCACTTTTTGATTTTAAAA
1 AAAAAAATTT-GG-TTTTGCTTTGTGGTGGCCGACACCACTTTTT-AATTT-AAA
** * * *
86940968 CAAAAAAAAATGGTTTTGTTTTTGTGGTGGCCAACACCATTTTTTAATTTAAA
1 -AAAAAAATTTGGTTTTG-CTTTGTGGTGGCCGACACCACTTTTTAATTTAAA
* * *
86941021 AACAAAATTTGGTTTTGACTTTGTGGTGGCCGACACAACTTTTTTATTTAAA
1 AAAAAAATTTGGTTTTG-CTTTGTGGTGGCCGACACCACTTTTTAATTTAAA
86941073 AAAA
1 AAAA
86941077 TATTTTTTTT
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
52 46 0.51
53 3 0.03
54 9 0.10
55 25 0.27
56 8 0.09
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (51 bp):
AAAAAAATTTGGTTTTGCTTTGTGGTGGCCGACACCACTTTTTAATTTAAA
Found at i:86942002 original size:16 final size:15
Alignment explanation
Indices: 86941983--86942021 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
86941973 TCCTTCCTTC
86941983 CTTTTTTTTGTTCTTT
1 CTTTTTTTTGTT-TTT
*
86941999 CTTTTTGTTGTTTTT
1 CTTTTTTTTGTTTTT
*
86942014 ATTTTTTT
1 CTTTTTTT
86942022 CATTTTTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.03, C:0.08, G:0.08, T:0.82
Consensus pattern (15 bp):
CTTTTTTTTGTTTTT
Found at i:86942027 original size:24 final size:23
Alignment explanation
Indices: 86941996--86942045 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
86941986 TTTTTTGTTC
* *
86941996 TTTCTTTTTGTT-GTTTTTATTTT
1 TTTCTTTTT-TTCGTTTTGATTAT
86942019 TTTCATTTTTTTCGTTTTGATTAT
1 TTTC-TTTTTTTCGTTTTGATTAT
86942043 TTT
1 TTT
86942046 GTTAACCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.08, C:0.06, G:0.08, T:0.78
Consensus pattern (23 bp):
TTTCTTTTTTTCGTTTTGATTAT
Found at i:86942873 original size:42 final size:42
Alignment explanation
Indices: 86942809--86942894 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
86942799 GTATAAAATC
* * *
86942809 CATACGGGCAAGGATACGGGTGTGTACCTAGGCCATGTGAAT
1 CATACGGGCAAGGACACAGGTGTGTACCCAGGCCATGTGAAT
* * *
86942851 CATACGGGCAGGGGCACAGGTGTGTACCCAGGCCGTGTGAAT
1 CATACGGGCAAGGACACAGGTGTGTACCCAGGCCATGTGAAT
86942893 CA
1 CA
86942895 CACGAGTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.24, C:0.22, G:0.35, T:0.19
Consensus pattern (42 bp):
CATACGGGCAAGGACACAGGTGTGTACCCAGGCCATGTGAAT
Found at i:86949236 original size:26 final size:29
Alignment explanation
Indices: 86949190--86949242 Score: 85
Period size: 26 Copynumber: 1.9 Consensus size: 29
86949180 CCTTCTTTTT
86949190 TTTTTAATTTTTGTTCTTTCTTTTTGTCG
1 TTTTTAATTTTTGTTCTTTCTTTTTGTCG
86949219 TTTTT-ATTTTT-TTC-TTCTTTTTGT
1 TTTTTAATTTTTGTTCTTTCTTTTTGT
86949243 TTTAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 10 0.42
27 3 0.12
28 6 0.25
29 5 0.21
ACGTcount: A:0.06, C:0.09, G:0.08, T:0.77
Consensus pattern (29 bp):
TTTTTAATTTTTGTTCTTTCTTTTTGTCG
Found at i:86949244 original size:23 final size:23
Alignment explanation
Indices: 86949181--86949254 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 23
86949171 ATTCTTCTTC
86949181 CTTCTTTTT-TTTTTAATTTTTGTT
1 CTTCTTTTTGTTTTT-ATTTTT-TT
86949205 CTTTCTTTTTGTCGTTTTTATTTTTTT
1 C-TTC-TTTT-T-GTTTTTATTTTTTT
* *
86949232 CTTCTTTTTGTTTTAATTATTTT
1 CTTCTTTTTGTTTTTATTTTTTT
86949255 GTTAACCGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
23 12 0.28
24 2 0.05
25 7 0.16
26 7 0.16
27 4 0.09
28 6 0.14
29 5 0.12
ACGTcount: A:0.08, C:0.09, G:0.05, T:0.77
Consensus pattern (23 bp):
CTTCTTTTTGTTTTTATTTTTTT
Found at i:86949251 original size:26 final size:26
Alignment explanation
Indices: 86949181--86949257 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
86949171 ATTCTTCTTC
*
86949181 CTTCTTTTTTTTTTAA-T-TTTTGTT
1 CTTCTTTTTGTTTTAATTATTTTGTT
*
86949205 CTTTCTTTTTGTCGTTT--TTATTTTTTT
1 C-TTCTTTTTGT--TTTAATTATTTTGTT
86949232 CTTCTTTTTGTTTTAATTATTTTGTT
1 CTTCTTTTTGTTTTAATTATTTTGTT
86949258 AACCGAAAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
24 4 0.09
25 9 0.21
26 20 0.47
27 10 0.23
ACGTcount: A:0.08, C:0.09, G:0.06, T:0.77
Consensus pattern (26 bp):
CTTCTTTTTGTTTTAATTATTTTGTT
Found at i:86950225 original size:92 final size:92
Alignment explanation
Indices: 86950068--86950256 Score: 369
Period size: 92 Copynumber: 2.1 Consensus size: 92
86950058 GTTTAGTAGT
*
86950068 AAGGGCATTTTGGTCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAATTTTGCTC
1 AAGGGCATTTTGATCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAATTTTGCTC
86950133 ATCTTCTTCACCATGGATGTGTATACC
66 ATCTTCTTCACCATGGATGTGTATACC
86950160 AAGGGCATTTTGATCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAATTTTGCTC
1 AAGGGCATTTTGATCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAATTTTGCTC
86950225 ATCTTCTTCACCATGGATGTGTATACC
66 ATCTTCTTCACCATGGATGTGTATACC
86950252 AAGGG
1 AAGGG
86950257 AGACTCCATG
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 96 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (92 bp):
AAGGGCATTTTGATCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAATTTTGCTC
ATCTTCTTCACCATGGATGTGTATACC
Found at i:86951523 original size:49 final size:49
Alignment explanation
Indices: 86951357--86951581 Score: 306
Period size: 49 Copynumber: 4.5 Consensus size: 49
86951347 TGAGGTCGCA
* * * * *
86951357 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * * **
86951408 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
86951458 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
86951507 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
86951556 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86951582 TGCGTACCAG
Statistics
Matches: 156, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 80 0.51
50 44 0.28
51 32 0.21
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:86951538 original size:99 final size:100
Alignment explanation
Indices: 86951350--86951589 Score: 322
Period size: 99 Copynumber: 2.4 Consensus size: 100
86951340 TCTATTATGA
* * *
86951350 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTAG
* **
86951415 TACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAAGCTACTACGTGTACCAGATAATT
* * * *
86951450 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTA
* *
86951513 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAAGCTACTACGTGTACCAGATAATT
* * *
86951549 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
86951590 AGATAGCTTT
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 36 0.30
99 44 0.36
100 1 0.01
101 41 0.34
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAAGCTACTACGTGTACCAGATAATT
Found at i:86963672 original size:43 final size:43
Alignment explanation
Indices: 86963619--86963705 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
86963609 CTAAGAAAGT
* *
86963619 AAAAAAAATTGATTATATATTAATGAAAAGCATCAATATTTTC
1 AAAAAAAATTGATTATATATTAATAAAAAACATCAATATTTTC
* *
86963662 AAAACAAATTGATTATATATTAATAAAAAATATCAATATTTTC
1 AAAAAAAATTGATTATATATTAATAAAAAACATCAATATTTTC
86963705 A
1 A
86963706 TTTACATTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.36
Consensus pattern (43 bp):
AAAAAAAATTGATTATATATTAATAAAAAACATCAATATTTTC
Done.