Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 30 of 427
Found at i:7784575 original size:26 final size:25
Alignment explanation
Indices: 7784546--7784604 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
7784536 AAGAATAGTA
7784546 AAATAAT-GATATTAATACCTAAACAT
1 AAATAATAGATA-TAATACCTAAA-AT
*
7784572 AAAT-CTAGATATAATACCTAAAAT
1 AAATAATAGATATAATACCTAAAAT
7784596 ATAATAATA
1 A-AATAATA
7784605 ATGAAAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 3 0.11
25 15 0.54
26 10 0.36
ACGTcount: A:0.56, C:0.10, G:0.03, T:0.31
Consensus pattern (25 bp):
AAATAATAGATATAATACCTAAAAT
Found at i:7784634 original size:17 final size:18
Alignment explanation
Indices: 7784591--7784636 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
7784581 TATAATACCT
7784591 AAAATAT-AATAATAATG
1 AAAATATAAATAATAATG
7784608 AAAATATAAATACATAA-G
1 AAAATATAAATA-ATAATG
7784626 -AAATATAAATA
1 AAAATATAAATA
7784637 GATGAATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 18 0.67
18 5 0.19
19 4 0.15
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (18 bp):
AAAATATAAATAATAATG
Found at i:7784851 original size:26 final size:26
Alignment explanation
Indices: 7784799--7784866 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 26
7784789 ATTAAATAAC
* *
7784799 AAATAATAATAATAACAATAATTAAA
1 AAATAATAATAATAACAAAAATAAAA
* * *
7784825 AAATGATAATAGTAATAAAAATAAAA
1 AAATAATAATAATAACAAAAATAAAA
* *
7784851 ATAATAGTAATGATAA
1 A-AATAATAATAATAA
7784867 TACATTAAGA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.26
Consensus pattern (26 bp):
AAATAATAATAATAACAAAAATAAAA
Found at i:7790165 original size:15 final size:16
Alignment explanation
Indices: 7790141--7790174 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7790131 AATTAAGTCT
*
7790141 ATTTTGGTAA-TAAAA
1 ATTTTAGTAATTAAAA
7790156 ATTTTAGTAATTAAAA
1 ATTTTAGTAATTAAAA
7790172 ATT
1 ATT
7790175 GATTCATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (16 bp):
ATTTTAGTAATTAAAA
Found at i:7793853 original size:18 final size:18
Alignment explanation
Indices: 7793830--7793918 Score: 106
Period size: 18 Copynumber: 4.9 Consensus size: 18
7793820 CGTTTACGGT
7793830 ACTATTCACGTATACAGC
1 ACTATTCACGTATACAGC
*
7793848 ACTATTCACGTATACAGT
1 ACTATTCACGTATACAGC
* *
7793866 ACTATTCAAGTATACGGC
1 ACTATTCACGTATACAGC
* * * *
7793884 ACTATTTACGAATACGGT
1 ACTATTCACGTATACAGC
*
7793902 ACTGTTCACGTATACAG
1 ACTATTCACGTATACAG
7793919 TAGTTGGGAT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 59 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (18 bp):
ACTATTCACGTATACAGC
Found at i:7793879 original size:36 final size:36
Alignment explanation
Indices: 7793828--7793918 Score: 128
Period size: 36 Copynumber: 2.5 Consensus size: 36
7793818 ACCGTTTACG
*
7793828 GTACTATTCACGTATACAGCACTATTCACGTATACA
1 GTACTATTCACGTATACAGCACTATTCACGAATACA
* * * *
7793864 GTACTATTCAAGTATACGGCACTATTTACGAATACG
1 GTACTATTCACGTATACAGCACTATTCACGAATACA
*
7793900 GTACTGTTCACGTATACAG
1 GTACTATTCACGTATACAG
7793919 TAGTTGGGAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (36 bp):
GTACTATTCACGTATACAGCACTATTCACGAATACA
Found at i:7801243 original size:18 final size:18
Alignment explanation
Indices: 7801168--7801243 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
7801158 TCTCAACTAC
* *
7801168 TGTATACGTAAACAGTAT
1 TGTATACGTGAATAGTAT
* *
7801186 CGTATACGTGAATAGTGT
1 TGTATACGTGAATAGTAT
* * *
7801204 CGTATACATGAATAGTAC
1 TGTATACGTGAATAGTAT
*
7801222 TGTATACGTGAATAATAT
1 TGTATACGTGAATAGTAT
7801240 TGTA
1 TGTA
7801244 AACAGTCGTA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (18 bp):
TGTATACGTGAATAGTAT
Found at i:7801802 original size:21 final size:22
Alignment explanation
Indices: 7801776--7801817 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7801766 TGACCTTTCC
*
7801776 AAGGTATGGG-TAGGTATGGGA
1 AAGGTATGGGCAAGGTATGGGA
7801797 AAGGTATGGGCAAGGTATGGG
1 AAGGTATGGGCAAGGTATGGG
7801818 GTATATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (22 bp):
AAGGTATGGGCAAGGTATGGGA
Found at i:7801803 original size:11 final size:10
Alignment explanation
Indices: 7801776--7801817 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
7801766 TGACCTTTCC
7801776 AAGGTATGGG
1 AAGGTATGGG
*
7801786 TAGGTATGGG
1 AAGGTATGGG
7801796 AAAGGTATGGG
1 -AAGGTATGGG
7801807 CAAGGTATGGG
1 -AAGGTATGGG
7801818 GTATATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (10 bp):
AAGGTATGGG
Found at i:7804196 original size:11 final size:11
Alignment explanation
Indices: 7804176--7804218 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
7804166 TAGAATATAT
7804176 CCCATACCTTG
1 CCCATACCTTG
* *
7804187 CCCTTACCTTT
1 CCCATACCTTG
*
7804198 CCCATACC-TA
1 CCCATACCTTG
7804208 CCCATACCTTG
1 CCCATACCTTG
7804219 GAAAGGTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.19, C:0.47, G:0.05, T:0.30
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:7804779 original size:18 final size:18
Alignment explanation
Indices: 7804755--7804828 Score: 105
Period size: 18 Copynumber: 4.1 Consensus size: 18
7804745 CCGTTTACGA
7804755 TACTATTCACGTATACAG
1 TACTATTCACGTATACAG
*
7804773 CACTATTCACGTATACTA-
1 TACTATTCACGTATAC-AG
*
7804791 TACTATTCACGTATACGG
1 TACTATTCACGTATACAG
*
7804809 TACTGTTCACGTATACAG
1 TACTATTCACGTATACAG
7804827 TA
1 TA
7804829 GCTGGGATTG
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
18 48 0.98
19 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (18 bp):
TACTATTCACGTATACAG
Found at i:7808880 original size:11 final size:11
Alignment explanation
Indices: 7808864--7808906 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
7808854 TAGAATATAT
7808864 CCCATACCTTG
1 CCCATACCTTG
*
7808875 CCCATACCTTT
1 CCCATACCTTG
*
7808886 CCCATACC-TA
1 CCCATACCTTG
7808896 CCCATACCTTG
1 CCCATACCTTG
7808907 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:7808891 original size:22 final size:21
Alignment explanation
Indices: 7808863--7808905 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7808853 TTAGAATATA
*
7808863 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
7808885 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
7808906 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:7811377 original size:17 final size:17
Alignment explanation
Indices: 7811355--7811391 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
7811345 ACTTAAATTT
7811355 ATTATATCAATATGATG
1 ATTATATCAATATGATG
7811372 ATTATATCAATATGATG
1 ATTATATCAATATGATG
7811389 ATT
1 ATT
7811392 TGAATATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (17 bp):
ATTATATCAATATGATG
Found at i:7811831 original size:15 final size:16
Alignment explanation
Indices: 7811801--7811834 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7811791 ATCATTATAT
*
7811801 TATTTTTTTAATAAAA
1 TATTTTTCTAATAAAA
7811817 TATTTTTCTAA-AAAA
1 TATTTTTCTAATAAAA
7811832 TAT
1 TAT
7811835 AAAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTTTTCTAATAAAA
Found at i:7822021 original size:6 final size:6
Alignment explanation
Indices: 7822010--7822079 Score: 54
Period size: 6 Copynumber: 11.7 Consensus size: 6
7822000 CATAAGTCTT
* * * * *
7822010 TAAAAA TAAAAA -AACAGAA -AAAAT TAAAAT TAAAAT TAAAAT TAAAAT
1 TAAAAA TAAAAA TAA-A-AA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
*
7822058 TAAAAA AAAAAA TAAAAA TAAA
1 TAAAAA TAAAAA TAAAAA TAAA
7822080 TGGAGTCAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
5 3 0.05
6 50 0.88
7 4 0.07
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:7822044 original size:12 final size:12
Alignment explanation
Indices: 7822029--7822062 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
7822019 AAAAACAGAA
7822029 AAAATTAAAATT
1 AAAATTAAAATT
7822041 AAAATTAAAATT
1 AAAATTAAAATT
7822053 AAAATTAAAA
1 AAAATTAAAA
7822063 AAAAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAATTAAAATT
Found at i:7822068 original size:18 final size:18
Alignment explanation
Indices: 7822027--7822079 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
7822017 AAAAAAACAG
7822027 AAAAAATTAAAATTAAAA
1 AAAAAATTAAAATTAAAA
**
7822045 TTAAAATTAAAATTAAAA
1 AAAAAATTAAAATTAAAA
* *
7822063 AAAAAAATAAAAATAAA
1 AAAAAATTAAAATTAAA
7822080 TGGAGTCAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAAATTAAAATTAAAA
Found at i:7826064 original size:27 final size:27
Alignment explanation
Indices: 7826014--7826065 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
7826004 TGTCAGAAGC
* *
7826014 AAAATAAAAGAAAAATTAGTAATAATA
1 AAAATAAAAAAAAAATTAGCAATAATA
7826041 AAAATAAAAAAATAAATT-GCAATAA
1 AAAATAAAAAAA-AAATTAGCAATAA
7826066 AACTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (27 bp):
AAAATAAAAAAAAAATTAGCAATAATA
Found at i:7826845 original size:23 final size:23
Alignment explanation
Indices: 7826811--7826857 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7826801 AGTAATAAAA
7826811 TTTGTCTAAGGTTTCATCTCCCT
1 TTTGTCTAAGGTTTCATCTCCCT
*
7826834 TTTGTCTTAGGTTTCATCTCCCT
1 TTTGTCTAAGGTTTCATCTCCCT
7826857 T
1 T
7826858 GGGTATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.11, C:0.26, G:0.13, T:0.51
Consensus pattern (23 bp):
TTTGTCTAAGGTTTCATCTCCCT
Found at i:7828165 original size:14 final size:14
Alignment explanation
Indices: 7828132--7828165 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
7828122 TAAGTACATC
*
7828132 ACAAAAACAGATGT
1 ACAAAATCAGATGT
7828146 -CAAAATCAGATGT
1 ACAAAATCAGATGT
7828159 ACAAAAT
1 ACAAAAT
7828166 AGAAAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.18
Consensus pattern (14 bp):
ACAAAATCAGATGT
Found at i:7829618 original size:6 final size:6
Alignment explanation
Indices: 7829610--7829639 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
7829600 AGAAAACAAA
*
7829610 GAGAGA GAGAGG GAGAGG GAGAGG GAGAGG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG
7829640 AGAACGTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (6 bp):
GAGAGG
Found at i:7831304 original size:22 final size:22
Alignment explanation
Indices: 7831279--7831320 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7831269 CCGTGGGGCT
*
7831279 GAGGTACACGCCCATGTGAAGG
1 GAGGCACACGCCCATGTGAAGG
* *
7831301 GAGGCACACGCTCGTGTGAA
1 GAGGCACACGCCCATGTGAA
7831321 CCAAGGACAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.24, G:0.36, T:0.14
Consensus pattern (22 bp):
GAGGCACACGCCCATGTGAAGG
Found at i:7832407 original size:32 final size:32
Alignment explanation
Indices: 7832339--7832409 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
7832329 AGAATTCTCG
* ** * * *
7832339 GCCCACATGCCTAAGTTGGCCTTGCCCATGTG
1 GCCCACATGCCCAACCTGGCCTAGCCCATATA
*
7832371 GCCCACATGCCCAACCTGGCCTAGCCCCTATA
1 GCCCACATGCCCAACCTGGCCTAGCCCATATA
7832403 GCCCACA
1 GCCCACA
7832410 CGGCCACTCT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.20, C:0.42, G:0.20, T:0.18
Consensus pattern (32 bp):
GCCCACATGCCCAACCTGGCCTAGCCCATATA
Found at i:7842601 original size:22 final size:22
Alignment explanation
Indices: 7842550--7842601 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
7842540 AAGACGAAGT
*
7842550 AAATAAT-ATATAAAAAATTTA
1 AAATAATAACATAAAAAATTTA
*
7842571 AAATAAATAACATAAAAAGTTTA
1 AAAT-AATAACATAAAAAATTTA
7842594 AAATAATA
1 AAATAATA
7842602 TATATACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 4 0.15
22 7 0.26
23 16 0.59
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (22 bp):
AAATAATAACATAAAAAATTTA
Found at i:7843959 original size:12 final size:12
Alignment explanation
Indices: 7843944--7843973 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7843934 CTTATTCTAT
*
7843944 TTATTATTATCA
1 TTATTATCATCA
7843956 TTATTATCATCA
1 TTATTATCATCA
7843968 TTATTA
1 TTATTA
7843974 ACATATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (12 bp):
TTATTATCATCA
Found at i:7844390 original size:41 final size:42
Alignment explanation
Indices: 7844286--7844406 Score: 190
Period size: 41 Copynumber: 2.9 Consensus size: 42
7844276 ACACCGCCGC
*
7844286 AACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTTTAAGA
1 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGC-TTTTTAAGA
* **
7844329 AACGTCGCTAAAGAATAGGACCTTTAGCGGCGCTTTTTAA-A
1 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTAAGA
7844370 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTT
1 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTT
7844407 CCCCGAAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
41 35 0.49
42 7 0.10
43 29 0.41
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (42 bp):
AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTTAAGA
Found at i:7844448 original size:43 final size:43
Alignment explanation
Indices: 7844286--7844472 Score: 157
Period size: 43 Copynumber: 4.4 Consensus size: 43
7844276 ACACCGCCGC
* * ***
7844286 AACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTT-TTTAAGA
1 AACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTCCCCAA-A
* ** * **
7844329 AACGTCGCTAAAGAATAGGACCTTTAGCGGCGCTTT--TTAAA
1 AACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTCCCCAAA
* *
7844370 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCCGAA
1 AACGCCGCTAAAGACCAGGACCTTTAGCGACGC-TTTCCCCAAA
* * * * *
7844414 AATGCCGCTAACGA-CATGATCTTTAGCGATGCTTTCCCCAAA
1 AACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTCCCCAAA
*
7844456 AACGCCACTAAAGACCA
1 AACGCCGCTAAAGACCA
7844473 TATATATTTC
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
41 31 0.26
42 27 0.22
43 48 0.40
44 14 0.12
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (43 bp):
AACGCCGCTAAAGACCAGGACCTTTAGCGACGCTTTCCCCAAA
Found at i:7844448 original size:84 final size:84
Alignment explanation
Indices: 7844286--7844472 Score: 198
Period size: 84 Copynumber: 2.2 Consensus size: 84
7844276 ACACCGCCGC
* ** *
7844286 AACGCCGCTAAAGACCAGGACTTTTAGCGGCGCTTTTTTAAGAAACGTCGCTAAAGAATAGGACC
1 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCAAGAAACGCCGCTAAAGAATA-GACC
* **
7844351 TTTAGCGGCGCTTT-TTAAA
65 TTTAGCGACGCTTTCCCAAA
** * * *
7844370 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCCCGAAAATGCCGCTAACGACAT-GAT
1 AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCAAG-AAACGCCGCTAAAGA-ATAGAC
*
7844434 CTTTAGCGATGCTTTCCCCAAA
64 CTTTAGCGACGCTTT-CCCAAA
*
7844456 AACGCCACTAAAGACCA
1 AACGCCGCTAAAGACCA
7844473 TATATATTTC
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
84 52 0.61
85 12 0.14
86 21 0.25
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (84 bp):
AACGCCGCTAAAGACCAGGACCTTTAGCGGCGCTTTTCCAAGAAACGCCGCTAAAGAATAGACCT
TTAGCGACGCTTTCCCAAA
Found at i:7848857 original size:74 final size:75
Alignment explanation
Indices: 7848764--7848987 Score: 391
Period size: 74 Copynumber: 3.0 Consensus size: 75
7848754 CGCCGTTTTC
7848764 ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
1 ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
7848829 ATTTGTTATA
66 ATTTGTTATA
* *
7848839 ATAGTG-TTTTTGTGGCGTTTTTT-TAAAAACGCCACTAATCTCTCAATTTTCATATTTATTTTT
1 ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
7848902 ATTTGTTATA
66 ATTTGTTATA
*
7848912 ATAGTGTTTTTTGTGGCG-TTTTTAAAAAAACACCACTAATCTCTTAATTTTCATATTTATTTTT
1 ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
*
7848976 ATTTGATATA
66 ATTTGTTATA
7848986 AT
1 AT
7848988 TTGGAAGCCA
Statistics
Matches: 141, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
73 59 0.42
74 76 0.54
75 6 0.04
ACGTcount: A:0.27, C:0.11, G:0.10, T:0.51
Consensus pattern (75 bp):
ATAGTGTTTTTTGTGGCGTTTTTTAAAAAAACGCCACTAATCTCTTAATTTTCATATTTATTTTT
ATTTGTTATA
Found at i:7849182 original size:7 final size:7
Alignment explanation
Indices: 7849170--7849291 Score: 61
Period size: 7 Copynumber: 17.1 Consensus size: 7
7849160 ACTAATTAAT
7849170 CTAAACC
1 CTAAACC
7849177 CTAAACC
1 CTAAACC
*
7849184 TCTTAACCC
1 -C-TAAACC
**
7849193 CT-GTCC
1 CTAAACC
*
7849199 CATAAACA
1 C-TAAACC
*
7849207 CTAAACT
1 CTAAACC
7849214 CTAAACC
1 CTAAACC
*
7849221 CTTAACC
1 CTAAACC
7849228 CTAAACC
1 CTAAACC
*
7849235 CTTACACC
1 C-TAAACC
*
7849243 TTAAA-C
1 CTAAACC
* *
7849249 TTTAACC
1 CTAAACC
7849256 CT-AACC
1 CTAAACC
7849262 CTTAAACC
1 C-TAAACC
*
7849270 CTAAATC
1 CTAAACC
* *
7849277 ATAATCC
1 CTAAACC
7849284 CTAAACC
1 CTAAACC
7849291 C
1 C
7849292 ATAATTCATC
Statistics
Matches: 86, Mismatches: 21, Indels: 16
0.70 0.17 0.13
Matches are distributed among these distances:
6 13 0.15
7 54 0.63
8 14 0.16
9 5 0.06
ACGTcount: A:0.37, C:0.39, G:0.01, T:0.24
Consensus pattern (7 bp):
CTAAACC
Found at i:7849231 original size:14 final size:14
Alignment explanation
Indices: 7849214--7849274 Score: 72
Period size: 14 Copynumber: 4.4 Consensus size: 14
7849204 ACACTAAACT
7849214 CTAAACCCTTAACC
1 CTAAACCCTTAACC
7849228 CTAAACCCTTACACC
1 CTAAACCCTTA-ACC
* *
7849243 TTAAA-CTTTAACC
1 CTAAACCCTTAACC
7849256 CT-AACCCTTAAACC
1 CTAAACCCTT-AACC
7849270 CTAAA
1 CTAAA
7849275 TCATAATCCC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 2 0.05
13 7 0.18
14 21 0.54
15 9 0.23
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (14 bp):
CTAAACCCTTAACC
Found at i:7849360 original size:21 final size:21
Alignment explanation
Indices: 7849334--7849478 Score: 118
Period size: 21 Copynumber: 6.9 Consensus size: 21
7849324 ACTCTTAAAC
7849334 CTTAAACCCTAAACCATATAT
1 CTTAAACCCTAAACCATATAT
* **
7849355 CTTAAA-CC-ATA-GTTA-ACT
1 CTTAAACCCTAAACCATATA-T
*
7849373 CATAAACCCTAAACCATATAT
1 CTTAAACCCTAAACCATATAT
*
7849394 CTTAAACCTTAAACCATATAT
1 CTTAAACCCTAAACCATATAT
* * *
7849415 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCCTA---AAC-CATATAT
*
7849440 CTTAAACCCCAAACCATATAT
1 CTTAAACCCTAAACCATATAT
* *
7849461 CTTAAAACATAAACCATA
1 CTTAAACCCTAAACCATA
7849479 AACTATAATG
Statistics
Matches: 96, Mismatches: 19, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
17 1 0.01
18 8 0.08
19 4 0.04
20 4 0.04
21 58 0.60
22 4 0.04
24 3 0.03
25 14 0.15
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCCTAAACCATATAT
Found at i:7849405 original size:46 final size:46
Alignment explanation
Indices: 7849301--7849411 Score: 116
Period size: 46 Copynumber: 2.4 Consensus size: 46
7849291 CATAATTCAT
* * * *
7849301 CATAAACCTTCAAA-TACTAGTTAACTCTTAAACCTTAAACCCTAAAC
1 CATAAACCTT-AAACCA-TAGTTAACTCATAAACCCTAAACCATAAAC
* * * *
7849348 CATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCATATAT
1 CATAAACCTTAAACCATAGTTAACTCATAAACCCTAAACCATAAAC
*
7849394 CTTAAACCTTAAACCATA
1 CATAAACCTTAAACCATA
7849412 TATCTTAAAC
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
46 43 0.83
47 9 0.17
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.29
Consensus pattern (46 bp):
CATAAACCTTAAACCATAGTTAACTCATAAACCCTAAACCATAAAC
Found at i:7849427 original size:60 final size:60
Alignment explanation
Indices: 7849334--7849447 Score: 210
Period size: 60 Copynumber: 1.9 Consensus size: 60
7849324 ACTCTTAAAC
7849334 CTTAAACCCTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCATATAT
1 CTTAAACCCTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCATATAT
* *
7849394 CTTAAACCTTAAACCATATATCTTAAACCATAGTTAACTCATAAACCTTAAACC
1 CTTAAACCCTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACC
7849448 CCAAACCATA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.29
Consensus pattern (60 bp):
CTTAAACCCTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCATATAT
Found at i:7849465 original size:60 final size:60
Alignment explanation
Indices: 7849330--7849471 Score: 185
Period size: 60 Copynumber: 2.4 Consensus size: 60
7849320 GTTAACTCTT
* * *
7849330 AAACCTTAAACCCTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCAT
1 AAACCATAAACCTTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCAC
* * * * *
7849390 ATATCTTAAACCTTAAACCATATATCTTAAACCATAGTTAACTCATAAACCTTAAACCCC
1 AAACCATAAACCTTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCAC
* * *
7849450 AAACCATATATCTTAAAACATA
1 AAACCATAAACCTTAAACCATA
7849472 AACCATAAAC
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 70 1.00
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.27
Consensus pattern (60 bp):
AAACCATAAACCTTAAACCATATATCTTAAACCATAGTTAACTCATAAACCCTAAACCAC
Found at i:7849729 original size:41 final size:40
Alignment explanation
Indices: 7849643--7849770 Score: 134
Period size: 41 Copynumber: 3.1 Consensus size: 40
7849633 GTTATATGAC
* * * *
7849643 TTTTAGCGGCG-TTTTTCCAAAAGCGCCGCTAGTGTTTTGG
1 TTTTAGCGGCGTTTTTTCTAAAA-CGCCGCTATTGCTATGG
* *
7849683 TTTTTAGCGGCGTTTTTTACTAAAACGCAGCTATTGCTCTGG
1 -TTTTAGCGGCGTTTTTT-CTAAAACGCCGCTATTGCTATGG
*
7849725 TTTTAGTGGCGTTTTTGT-TAAAACGCCGCTATTGCTATGTG
1 TTTTAGCGGCGTTTTT-TCTAAAACGCCGCTATTGCTATG-G
7849766 TTTTA
1 TTTTA
7849771 CAATTTTTGC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
40 19 0.25
41 32 0.43
42 19 0.25
43 5 0.07
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.42
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTTCTAAAACGCCGCTATTGCTATGG
Found at i:7849861 original size:22 final size:22
Alignment explanation
Indices: 7849825--7849869 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
7849815 TTTCCTGTAG
7849825 TGTTGTTATTAATAT-TAGTATA
1 TGTTGTTATTAATATGTA-TATA
7849847 TGTT-TTATTATATATGTATATA
1 TGTTGTTATTA-ATATGTATATA
7849869 T
1 T
7849870 ATCTTTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 6 0.29
22 13 0.62
23 2 0.10
ACGTcount: A:0.31, C:0.00, G:0.11, T:0.58
Consensus pattern (22 bp):
TGTTGTTATTAATATGTATATA
Found at i:7849977 original size:2 final size:2
Alignment explanation
Indices: 7849972--7849998 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7849962 CATCCTTTTA
7849972 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7849999 ATACTCCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7850198 original size:24 final size:24
Alignment explanation
Indices: 7850162--7850212 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
7850152 CCCGTACATA
*
7850162 TATTTTTAATATTA-TATATACTTT
1 TATTTCTAATATTACTATATA-TTT
*
7850186 TATTTCTATTATTACGTATATATTT
1 TATTTCTAATATTAC-TATATATTT
7850211 TA
1 TA
7850213 ATACCATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 12 0.52
25 5 0.22
26 6 0.26
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTTCTAATATTACTATATATTT
Found at i:7851407 original size:16 final size:17
Alignment explanation
Indices: 7851390--7851423 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7851380 AACAAAACAA
*
7851390 ATAAAAAAAGTAAAAAAT
1 ATAAAAATA-TAAAAAAT
7851408 ATAAAAATATAAAAAA
1 ATAAAAATATAAAAAA
7851424 ACTAAGGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (17 bp):
ATAAAAATATAAAAAAT
Found at i:7852875 original size:46 final size:46
Alignment explanation
Indices: 7852817--7852909 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
7852807 ACAAAACAAT
* *
7852817 AGCATTATATGAACATATAAATAAATAAAAGAGCACCACAAAATCA
1 AGCAATATATGAACATATAAACAAATAAAAGAGCACCACAAAATCA
7852863 AGCAATATATGAACATATAAACAAATAAAAGAGCACCACAAAATCA
1 AGCAATATATGAACATATAAACAAATAAAAGAGCACCACAAAATCA
7852909 A
1 A
7852910 ATAATTTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.58, C:0.16, G:0.09, T:0.17
Consensus pattern (46 bp):
AGCAATATATGAACATATAAACAAATAAAAGAGCACCACAAAATCA
Found at i:7853596 original size:292 final size:293
Alignment explanation
Indices: 7853068--7853647 Score: 1022
Period size: 292 Copynumber: 2.0 Consensus size: 293
7853058 GACAAAAAAC
*
7853068 ACAAGTTTGAGGGCTAAAAATGTGAAAAATTAAATCGATCGCTAAAATAACTTTTGTTTTGTAAA
1 ACAAGTTTGAGGGCTAAAAATATGAAAAATTAAATCGATCGCTAAAATAACTTTTGTTTTGTAAA
* *
7853133 GTTAGAGTGCCAAATAAGTCATTATGCCAAAAATTATTTCCCATTCAAGAAGGGTAAAGTACAGG
66 GTTAGAGTGCCAAATAAATCATTATGCCAAAAATTATTTCCCATTCAAAAAGGGTAAAGTACAGG
* *
7853198 AATGCCACTAAACTATTGCACGCATTGTATTTTGGTTACTAAACTTTTAATTTTTTCAATTTAGT
131 AATGCCACTAAACTATTGCACACATTCTATTTTGGTTACTAAACTTTTAATTTTTTCAATTTAGT
*
7853263 CATTAAACTATTCGAAATCAAATTTTTCTACCACAAAAAATTAACAGCGTTTGGAATTTGATGGA
196 CATTAAACTATTCGAAATCAAATTTTTCTACCACAAAAAATTAACAGCGTTTGAAATTTGATGGA
7853328 AGTGCTAACATGTG-TTTTCTATTGGTCTAATA
261 AGTGCTAACATGTGTTTTTCTATTGGTCTAATA
*
7853360 ACAAGTTTGAGGGCT-AAAATATGAAAAATTAAATCGATGGCTAAAATAACACTTTT-TTTTGTA
1 ACAAGTTTGAGGGCTAAAAATATGAAAAATTAAATCGATCGCTAAAAT-A-ACTTTTGTTTTGTA
*
7853423 AAGTTGGAGTGCCAAATAAATCATTATGCCAAAAATTATTTCCCATTCAAAAAGGGTAAAGTACA
64 AAGTTAGAGTGCCAAATAAATCATTATGCCAAAAATTATTTCCCATTCAAAAAGGGTAAAGTACA
*
7853488 GGAATGCCACTAAACTATTGCACACATTCTATTTTGGTTACTGAACTTTTAATTTTTTCAATTTA
129 GGAATGCCACTAAACTATTGCACACATTCTATTTTGGTTACTAAACTTTTAATTTTTTCAATTTA
* *
7853553 GTCATTAAACTATTCGAAATCAAATTTTTTTACCACCAAAAATTAACAGCGTTTGAAATTTGATG
194 GTCATTAAACTATTCGAAATCAAATTTTTCTACCACAAAAAATTAACAGCGTTTGAAATTTGATG
7853618 GAAGTGCTAACATGTGTTTTTCTATTGGTC
259 GAAGTGCTAACATGTGTTTTTCTATTGGTC
7853648 CTCTAAAATT
Statistics
Matches: 274, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
291 30 0.11
292 225 0.82
293 19 0.07
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (293 bp):
ACAAGTTTGAGGGCTAAAAATATGAAAAATTAAATCGATCGCTAAAATAACTTTTGTTTTGTAAA
GTTAGAGTGCCAAATAAATCATTATGCCAAAAATTATTTCCCATTCAAAAAGGGTAAAGTACAGG
AATGCCACTAAACTATTGCACACATTCTATTTTGGTTACTAAACTTTTAATTTTTTCAATTTAGT
CATTAAACTATTCGAAATCAAATTTTTCTACCACAAAAAATTAACAGCGTTTGAAATTTGATGGA
AGTGCTAACATGTGTTTTTCTATTGGTCTAATA
Found at i:7860673 original size:3 final size:3
Alignment explanation
Indices: 7860658--7860777 Score: 127
Period size: 3 Copynumber: 40.7 Consensus size: 3
7860648 TTTTATCCTC
* *
7860658 ATT ATT ATG ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
7860706 AAT ATT ATT ATT ATT ACT ATT ATT -TG A-T ACT ATC ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
7860752 ATT CTA ATT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
7860778 ATGTATACAT
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
2 2 0.02
3 92 0.98
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:7860811 original size:25 final size:27
Alignment explanation
Indices: 7860765--7860831 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 27
7860755 CTAATTACTA
*
7860765 TTATTATTATTATATGTATACATACCTT
1 TTATTATTATTACATG-ATACATACCTT
*
7860793 TTATTATTATT-CATG-TACATACTTT
1 TTATTATTATTACATGATACATACCTT
*
7860818 TTAAATATTATTAC
1 TT-ATTATTATTAC
7860832 CATTATTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 11 0.32
26 8 0.24
27 4 0.12
28 11 0.32
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.54
Consensus pattern (27 bp):
TTATTATTATTACATGATACATACCTT
Found at i:7869382 original size:19 final size:19
Alignment explanation
Indices: 7869343--7869383 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7869333 AACTTAGGAA
*
7869343 TTTTTTAGAATTTTATGAT
1 TTTTTTAGAATTTTATAAT
7869362 TTTTTTA-AATTTTAATAAT
1 TTTTTTAGAATTTT-ATAAT
7869381 TTT
1 TTT
7869384 AATTATGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTTTTAGAATTTTATAAT
Found at i:7869718 original size:19 final size:17
Alignment explanation
Indices: 7869694--7869733 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
7869684 AAATTATGAC
*
7869694 TTTTTCAATTTTTCAAGAA
1 TTTTTCAATGTTT-AA-AA
7869713 TTTTTCAATGTTTAAAA
1 TTTTTCAATGTTTAAAA
7869730 TTTT
1 TTTT
7869734 GTGGATTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 2 0.10
19 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.57
Consensus pattern (17 bp):
TTTTTCAATGTTTAAAA
Found at i:7875808 original size:21 final size:22
Alignment explanation
Indices: 7875782--7875823 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7875772 TGACCTTTCC
*
7875782 AAGGTATGGG-TAGGTATGGGA
1 AAGGTATGGGCAAGGTATGGGA
7875803 AAGGTATGGGCAAGGTATGGG
1 AAGGTATGGGCAAGGTATGGG
7875824 TATATTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (22 bp):
AAGGTATGGGCAAGGTATGGGA
Found at i:7875809 original size:11 final size:10
Alignment explanation
Indices: 7875782--7875823 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
7875772 TGACCTTTCC
7875782 AAGGTATGGG
1 AAGGTATGGG
*
7875792 TAGGTATGGG
1 AAGGTATGGG
7875802 AAAGGTATGGG
1 -AAGGTATGGG
7875813 CAAGGTATGGG
1 -AAGGTATGGG
7875824 TATATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (10 bp):
AAGGTATGGG
Found at i:7879875 original size:18 final size:18
Alignment explanation
Indices: 7879852--7879923 Score: 99
Period size: 18 Copynumber: 4.0 Consensus size: 18
7879842 CCCAACTACT
*
7879852 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* *
7879870 GTATACATGAATAGTATC
1 GTATACGTGAATAGTACC
**
7879888 GTATACGTGAATAGTATT
1 GTATACGTGAATAGTACC
7879906 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
7879924 ATAAACGGTC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.31
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:7880483 original size:21 final size:22
Alignment explanation
Indices: 7880457--7880498 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7880447 TGACCTTTCC
*
7880457 AAGGTATGGG-TAGGTATGGGA
1 AAGGTATGGGCAAGGTATGGGA
7880478 AAGGTATGGGCAAGGTATGGG
1 AAGGTATGGGCAAGGTATGGG
7880499 TATATTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (22 bp):
AAGGTATGGGCAAGGTATGGGA
Found at i:7880484 original size:11 final size:10
Alignment explanation
Indices: 7880457--7880498 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
7880447 TGACCTTTCC
7880457 AAGGTATGGG
1 AAGGTATGGG
*
7880467 TAGGTATGGG
1 AAGGTATGGG
7880477 AAAGGTATGGG
1 -AAGGTATGGG
7880488 CAAGGTATGGG
1 -AAGGTATGGG
7880499 TATATTCTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (10 bp):
AAGGTATGGG
Found at i:7884549 original size:18 final size:18
Alignment explanation
Indices: 7884526--7884597 Score: 90
Period size: 18 Copynumber: 4.0 Consensus size: 18
7884516 CCCAACTACT
*
7884526 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* **
7884544 GTATACATGAATAGTGTC
1 GTATACGTGAATAGTACC
**
7884562 GTATACGTGAATAGTATT
1 GTATACGTGAATAGTACC
7884580 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
7884598 ATAAACGGTC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:7884584 original size:36 final size:36
Alignment explanation
Indices: 7884526--7884594 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
7884516 CCCAACTACT
7884526 GTATACGTGAACAGTACCGTATACATGAATAGTGTC
1 GTATACGTGAACAGTACCGTATACATGAATAGTGTC
* ** *
7884562 GTATACGTGAATAGTATTGTATACGTGAATAGT
1 GTATACGTGAACAGTACCGTATACATGAATAGT
7884595 ACCATAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (36 bp):
GTATACGTGAACAGTACCGTATACATGAATAGTGTC
Found at i:7885160 original size:21 final size:22
Alignment explanation
Indices: 7885134--7885175 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7885124 TGACCTTTCC
*
7885134 AAGGTATGGG-TAGGTATGGGA
1 AAGGTATGGGCAAGGTATGGGA
7885155 AAGGTATGGGCAAGGTATGGG
1 AAGGTATGGGCAAGGTATGGG
7885176 GTATATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (22 bp):
AAGGTATGGGCAAGGTATGGGA
Found at i:7885161 original size:11 final size:10
Alignment explanation
Indices: 7885134--7885175 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
7885124 TGACCTTTCC
7885134 AAGGTATGGG
1 AAGGTATGGG
*
7885144 TAGGTATGGG
1 AAGGTATGGG
7885154 AAAGGTATGGG
1 -AAGGTATGGG
7885165 CAAGGTATGGG
1 -AAGGTATGGG
7885176 GTATATTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (10 bp):
AAGGTATGGG
Found at i:7885473 original size:6 final size:6
Alignment explanation
Indices: 7885455--7885495 Score: 59
Period size: 6 Copynumber: 7.0 Consensus size: 6
7885445 TAATATTATC
7885455 TTCTTCT TT-TTT TTCTTT TTC-TT TTCTTT TTCTTT TTCTTT
1 TTCTT-T TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT
7885496 ATTAAATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 8 0.25
6 22 0.69
7 2 0.06
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTCTTT
Found at i:7885481 original size:11 final size:11
Alignment explanation
Indices: 7885455--7885495 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
7885445 TAATATTATC
*
7885455 TTCTTCTTTTTT
1 TTCTT-TTTCTT
7885467 TTCTTTTTCTT
1 TTCTTTTTCTT
7885478 TTCTTTTTCTTT
1 TTCTTTTTC-TT
7885490 TTCTTT
1 TTCTTT
7885496 ATTAAATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 14 0.52
12 13 0.48
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTCTTTTTCTT
Found at i:7885892 original size:2 final size:2
Alignment explanation
Indices: 7885887--7885913 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7885877 TAAACTATGA
7885887 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7885914 ATCTATTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7897212 original size:2 final size:2
Alignment explanation
Indices: 7897205--7897245 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7897195 TACAAGTTAT
7897205 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7897246 TCAAATGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7900518 original size:15 final size:16
Alignment explanation
Indices: 7900500--7900535 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
7900490 ATTTGTGTGT
7900500 TTTTTATTTT-ATTTA
1 TTTTTATTTTGATTTA
*
7900515 TTTTTATTTTGTTTTA
1 TTTTTATTTTGATTTA
7900531 TTTTT
1 TTTTT
7900536 TCACAAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTTATTTTGATTTA
Found at i:7904622 original size:15 final size:16
Alignment explanation
Indices: 7904604--7904637 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7904594 TTGTTTGTTC
7904604 TTTATTTT-ATTTATT
1 TTTATTTTGATTTATT
*
7904619 TTTATTTTGTTTTATT
1 TTTATTTTGATTTATT
7904635 TTT
1 TTT
7904638 TCACAATGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTATTTTGATTTATT
Found at i:7914697 original size:2 final size:2
Alignment explanation
Indices: 7914690--7914719 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7914680 TCGGTGTAAA
7914690 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7914720 GTGTGTCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7916589 original size:177 final size:177
Alignment explanation
Indices: 7916279--7916679 Score: 436
Period size: 177 Copynumber: 2.3 Consensus size: 177
7916269 AGGGAAATAT
* * * *
7916279 GACTGGTGGCTTAAATCTGCTCCATTGCCAATACATAGAGATAAGATTTATCATCCTCGATCTGC
1 GACTGGTGGCTTAAATCTGCTCCATTGTCGATACATAGAGATAAGATTCACCATCCTCGATCTGC
* * * * * *
7916344 TCCACAACGGCTTAGGAAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGA
66 TCCACAACGGCTTAGGAAGATAAGACCTGCAATCGTCAATCTACTTCCCTGCAACCTCAGGAAGA
* * *
7916409 TAAGAC-TA-CAATTGCCAACCTCCTCTC-TTGCTACCTCAGAGAGATAA
131 TAAGACTTATCAATTG--AACCTCCTC-CACTGCAACATCAGAGAGATAA
* * * * *
7916456 GGCTGGTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCTTCTTCGATCTGC
1 GACTGGTGGCTTAAATCTGCTCCATTGTCGATACATAGAGATAAGATTCACCATCCTCGATCTGC
* * ** * *
7916521 TCTACTATTGCTTAGGGAGATAAGACCTGCAATCGTCAATCTTC-TCCACTGCAACCTCAAGG-A
66 TCCACAACGGCTTAGGAAGATAAGACCTGCAATCGTCAATCTACTTCC-CTGCAACCTC-AGGAA
** * * * *
7916584 GATAAGACTTATGTATTGAGCCTGCTCCACTGCAACATTAGGGAGATAA
129 GATAAGACTTATCAATTGAACCTCCTCCACTGCAACATCAGAGAGATAA
*
7916633 GACTGGTGGCTTAAA-CTACTCCATTGTCGATACATAGAGATAAGATT
1 GACTGGTGGCTTAAATCTGCTCCATTGTCGATACATAGAGATAAGATT
7916680 TGTCGTCTTT
Statistics
Matches: 185, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
176 34 0.18
177 142 0.77
178 5 0.03
179 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (177 bp):
GACTGGTGGCTTAAATCTGCTCCATTGTCGATACATAGAGATAAGATTCACCATCCTCGATCTGC
TCCACAACGGCTTAGGAAGATAAGACCTGCAATCGTCAATCTACTTCCCTGCAACCTCAGGAAGA
TAAGACTTATCAATTGAACCTCCTCCACTGCAACATCAGAGAGATAA
Found at i:7917129 original size:64 final size:64
Alignment explanation
Indices: 7917046--7917253 Score: 294
Period size: 64 Copynumber: 3.2 Consensus size: 64
7917036 AGGATAAACG
* * * *
7917046 CTCCTAACTAAATGAGATGCTCATGTCAAACAATTAGGATGCTATGATCAAAATGAATCAAATG
1 CTCCTAACTAGATGTGATGCTCATGTCAAACAATTAGGATGCTATGATCGAAATGAATCAAATA
* * * *
7917110 TTCGTAACTAGATGTGATGCTTATGTCAAACAATTAGGATGCTACGATCGAAATGAATCAAATA
1 CTCCTAACTAGATGTGATGCTCATGTCAAACAATTAGGATGCTATGATCGAAATGAATCAAATA
* *
7917174 CTCCTAACTAGATGTGATAC-CTATGTCAAATAATTAGGATGCTATGAAT-GAAATGAATCAAAT
1 CTCCTAACTAGATGTGATGCTC-ATGTCAAACAATTAGGATGCTATG-ATCGAAATGAATCAAAT
7917237 A
64 A
7917238 CTCCTAACTAGATGTG
1 CTCCTAACTAGATGTG
7917254 TTATGAATGA
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
64 126 0.98
65 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (64 bp):
CTCCTAACTAGATGTGATGCTCATGTCAAACAATTAGGATGCTATGATCGAAATGAATCAAATA
Found at i:7918387 original size:23 final size:23
Alignment explanation
Indices: 7918359--7918420 Score: 72
Period size: 25 Copynumber: 2.6 Consensus size: 23
7918349 TTTTTTTTCT
7918359 TTTTTTGATTTTTTTATTCATTA
1 TTTTTTGATTTTTTTATTCATTA
* *
7918382 GTTTTTTGAATTTTTATTTTTTATTA
1 -TTTTTTG-ATTTTT-TTATTCATTA
7918408 TTTTTT-ATTTTTT
1 TTTTTTGATTTTTT
7918421 CTTGATTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 1 0.03
23 6 0.18
24 7 0.21
25 12 0.35
26 8 0.24
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (23 bp):
TTTTTTGATTTTTTTATTCATTA
Found at i:7918403 original size:17 final size:18
Alignment explanation
Indices: 7918383--7918430 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
7918373 TATTCATTAG
7918383 TTTT-TTGAATTTTTATT
1 TTTTATTGAATTTTTATT
*
7918400 TTTTATT-ATTTTTTATT
1 TTTTATTGAATTTTTATT
*
7918417 TTTTCTTG-ATTTTT
1 TTTTATTGAATTTTT
7918431 TTTAATGTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 24 0.92
18 2 0.08
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (18 bp):
TTTTATTGAATTTTTATT
Found at i:7921797 original size:19 final size:19
Alignment explanation
Indices: 7921773--7921818 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
7921763 GTGAAAATTT
7921773 AATGCAAATG-AT-GCAATG
1 AATGCAAATGCATAG-AATG
*
7921791 CAATGCACATGCATAGAATG
1 -AATGCAAATGCATAGAATG
7921811 AATGCAAA
1 AATGCAAA
7921819 AGAAAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 16 0.70
20 6 0.26
21 1 0.04
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATAGAATG
Found at i:7926151 original size:23 final size:25
Alignment explanation
Indices: 7926116--7926177 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
7926106 CCAATTACAC
7926116 TTAATACTCTTAAAAACCCA-AACCA
1 TTAATACT-TTAAAAACCCATAACCA
* *
7926141 TTAA-ACTTTAAAACCCCATATCCA
1 TTAATACTTTAAAAACCCATAACCA
7926165 TTAATA-TTTAAAA
1 TTAATACTTTAAAA
7926178 TTCAATTTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 10 0.30
24 18 0.55
25 5 0.15
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.31
Consensus pattern (25 bp):
TTAATACTTTAAAAACCCATAACCA
Found at i:7931712 original size:26 final size:26
Alignment explanation
Indices: 7931676--7931811 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
7931666 CATGATATTC
7931676 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
7931702 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
7931728 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7931754 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
7931780 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
7931806 TTATCA
1 TTATCA
7931812 ATTTGTACCA
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:7933711 original size:197 final size:198
Alignment explanation
Indices: 7933376--7933769 Score: 668
Period size: 197 Copynumber: 2.0 Consensus size: 198
7933366 TTCTTCTAGT
* * * *
7933376 TGATATCCAAACATTTTAACATTTAAAGATGCATATTGCAGGCGTAAAAAATGATTATTTGCAGG
1 TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGG
* *
7933441 TATTTTATCAAGGTCGGATATCAAGTTATCGTTTTGTATTGGAGGTGAATTTTATTTTTGCTGAT
66 TAATTTATCAAGGTCGGATATCAAGTTATCGTTTTGTACTGGAGGTGAATTTTATTTTTGCTGAT
*
7933506 TGTTTATTTGTATGGTTGATT-TTTTTTGTTTGTGTTCAGTGGATATTTGCATTGATTCTGCAAC
131 TGTTTATTTGTATGGTTGATTATTTTTTGTTTGTGCTCAGTGGATATTTGCATTGATTCTGCAAC
7933570 TTG
196 TTG
7933573 TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGG
1 TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGG
* *
7933638 TAATTTATCAAGG-CTGGATAT-AAGGTTATTGTTTTGTACTGGAGGTGAATTTTATTTTTGTTG
66 TAATTTATCAAGGTC-GGATATCAA-GTTATCGTTTTGTACTGGAGGTGAATTTTATTTTTGCTG
7933701 ATTGTTTATTTGTATGGTTGATTATTTTTTGTTTGTGCTCAGTGGATATTTGCATTGATTCTGCA
129 ATTGTTTATTTGTATGGTTGATTATTTTTTGTTTGTGCTCAGTGGATATTTGCATTGATTCTGCA
7933766 ACTT
194 ACTT
7933770 ATGTGCGTGT
Statistics
Matches: 185, Mismatches: 9, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
196 3 0.02
197 138 0.75
198 44 0.24
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (198 bp):
TGATATCCAAACATTTTAACATTTAAACATGCATATCGCAGACGTAAAAAATGACTATTTGCAGG
TAATTTATCAAGGTCGGATATCAAGTTATCGTTTTGTACTGGAGGTGAATTTTATTTTTGCTGAT
TGTTTATTTGTATGGTTGATTATTTTTTGTTTGTGCTCAGTGGATATTTGCATTGATTCTGCAAC
TTG
Found at i:7934774 original size:96 final size:96
Alignment explanation
Indices: 7934610--7934801 Score: 375
Period size: 96 Copynumber: 2.0 Consensus size: 96
7934600 AACTTGCAAG
7934610 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
1 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
*
7934675 GAAAAACAAGTATTTGTATTGACACTGGTGT
66 GAAAAACAAGTATTTGTATTCACACTGGTGT
7934706 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
1 CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
7934771 GAAAAACAAGTATTTGTATTCACACTGGTGT
66 GAAAAACAAGTATTTGTATTCACACTGGTGT
7934802 TCCTTGCAAA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (96 bp):
CATTTGCACTAGACATTCTGAAGAATGATATCAAATTTGATATATTTTCCATTACCAAGAAAATG
GAAAAACAAGTATTTGTATTCACACTGGTGT
Found at i:7935730 original size:19 final size:19
Alignment explanation
Indices: 7935703--7935800 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
7935693 AATCTTTAAG
7935703 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7935722 GATACGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7935741 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7935758 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7935777 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
7935798 GAT
1 GAT
7935801 CTTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7935733 original size:36 final size:35
Alignment explanation
Indices: 7935693--7935800 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
7935683 ATGGAAATAT
7935693 AATCTTTAAGGATATGCAATCTTAGATATGATACGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATACGC
*
7935729 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATACGC
*
7935765 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
7935801 CTTGTAATCT
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.45
37 1 0.02
38 7 0.12
40 10 0.17
41 6 0.10
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATACGC
Found at i:7937230 original size:38 final size:38
Alignment explanation
Indices: 7937187--7937264 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
7937177 TTTATATATG
7937187 TGACACTGACTTGTTTTTCTTATTTTGCTATCATTGTA
1 TGACACTGACTTGTTTTTCTTATTTTGCTATCATTGTA
7937225 TGACACTGACTTGTTTTTCTTATTTTGCTATCATTGTA
1 TGACACTGACTTGTTTTTCTTATTTTGCTATCATTGTA
7937263 TG
1 TG
7937265 TCATTTATCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (38 bp):
TGACACTGACTTGTTTTTCTTATTTTGCTATCATTGTA
Found at i:7941006 original size:17 final size:17
Alignment explanation
Indices: 7940980--7941021 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
7940970 AAAAAGGGAA
*
7940980 AAAAAGAAAATAAAAAGAG
1 AAAAA-AAAAGAAAAA-AG
7940999 AAAAAAAAAGAAAAAAG
1 AAAAAAAAAGAAAAAAG
7941016 AAAAAA
1 AAAAAA
7941022 TGGAGAGGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 9 0.41
19 5 0.23
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAAG
Found at i:7941009 original size:12 final size:11
Alignment explanation
Indices: 7940978--7941019 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 11
7940968 AAAAAAAGGG
7940978 AAAAAAAGAAA
1 AAAAAAAGAAA
*
7940989 ATAAAAAGAGAA
1 AAAAAAAGA-AA
7941001 AAAAAAAGAAA
1 AAAAAAAGAAA
7941012 AAAGAAAA
1 AAA-AAAA
7941020 AATGGAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:7941010 original size:10 final size:10
Alignment explanation
Indices: 7940967--7941021 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
7940957 CTTCTATTTC
*
7940967 AAAAAAAAGG
1 AAAAAAAAGA
*
7940977 GAAAAAAAGA
1 AAAAAAAAGA
7940987 AAATAAAAAGA
1 AAA-AAAAAGA
*
7940998 GAAAAAAA-A
1 AAAAAAAAGA
*
7941007 AGAAAAAAGA
1 AAAAAAAAGA
7941017 AAAAA
1 AAAAA
7941022 TGGAGAGGCC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
9 7 0.19
10 20 0.56
11 9 0.25
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:7942074 original size:44 final size:44
Alignment explanation
Indices: 7942024--7942277 Score: 178
Period size: 44 Copynumber: 5.8 Consensus size: 44
7942014 GATCCAAGAT
* * *
7942024 GATTTGGCATTTTTGTATTGGCAGAGAGCAGATTGAAGACAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATAGAAGACAACA
* * ** *
7942068 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATGACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATAGAAGACAACA
* * *
7942112 GATTTGGCATCTCTGTATTCAGCGGAGAGCAGATAGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATAGAAGACA-A-CA
* * ** * * ** *
7942159 GATTTGGC-TTTCATGTGTTTAC-GTTGAAGCAAATCTAAG---A-T
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGATAGAAGACAACA
* * * * *
7942200 GATTTGGCATCTCTGAATTGGCAGAAAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATAGAAGACAACA
*
7942244 GATTTGGCATCTCTGTATTGGCAAAGAGCAGATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATA
7942278 ATTTAGACCA
Statistics
Matches: 162, Mismatches: 36, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
40 10 0.06
41 14 0.09
42 4 0.02
43 1 0.01
44 85 0.52
45 18 0.11
46 6 0.04
47 24 0.15
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATAGAAGACAACA
Found at i:7942376 original size:17 final size:18
Alignment explanation
Indices: 7942354--7942431 Score: 54
Period size: 19 Copynumber: 4.3 Consensus size: 18
7942344 ATGGAAATAT
7942354 AATCTT-TAAGGATATGC
1 AATCTTATAAGGATATGC
* *
7942371 AATCTTAGTTATGATATGC
1 AATCTTA-TAAGGATATGC
* *
7942390 AATCTTAGATATGATA--C
1 AATCTTATA-AGGATATGC
* *
7942407 AATCTTAGATATGATATGC
1 AATCTTATA-AGGATATGC
7942426 AATCTT
1 AATCTT
7942432 GAAGAAATGA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
17 23 0.44
19 29 0.56
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (18 bp):
AATCTTATAAGGATATGC
Found at i:7942388 original size:19 final size:19
Alignment explanation
Indices: 7942364--7942431 Score: 113
Period size: 19 Copynumber: 3.7 Consensus size: 19
7942354 AATCTTTAAG
*
7942364 GATATGCAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
7942383 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7942402 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7942419 GATATGCAATCTT
1 GATATGCAATCTT
7942432 GAAGAAATGA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
17 17 0.37
19 29 0.63
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7942400 original size:14 final size:15
Alignment explanation
Indices: 7942383--7942420 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
7942373 TCTTAGTTAT
7942383 GATATG-CAATCTTA
1 GATATGACAATCTTA
7942397 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
7942414 GATATGA
1 GATATGA
7942421 TATGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:7944365 original size:130 final size:130
Alignment explanation
Indices: 7944111--7944629 Score: 824
Period size: 130 Copynumber: 4.0 Consensus size: 130
7944101 AATTTAGAGA
* * * * * **
7944111 ACATGAGTGAAATT-CTAAGGAATATTCAATTATTTTGAATAAACAAGAAATCACAACCCAGCAC
1 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCACAACCCAGCAC
* ** * *
7944175 GATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAA
66 GGTAGGGCACGATT-CCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
7944240 G
130 G
*
7944241 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCACAACCCAGCAT
1 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCACAACCCAGCAC
* * *
7944306 AGTAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCCTTCGTTTTAAAGAATTTTTAACG
66 GGTAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAAG
* *
7944371 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTAAACAAACGGGAAATCGCAACCCAGCAC
1 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCACAACCCAGCAC
*
7944436 GGTAGGGCACGATTCTCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAAG
66 GGTAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAAG
* *
7944501 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCGCAATCCAGCAC
1 ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCACAACCCAGCAC
*
7944566 GGTAGGACACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
66 GGTAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
7944630 TGAATAATTA
Statistics
Matches: 361, Mismatches: 27, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
130 306 0.85
131 55 0.15
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (130 bp):
ACATGGGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATCACAACCCAGCAC
GGTAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAAG
Found at i:7949555 original size:60 final size:62
Alignment explanation
Indices: 7949453--7949603 Score: 152
Period size: 60 Copynumber: 2.5 Consensus size: 62
7949443 CCAACTATGT
* * *
7949453 TGATATGGGCAAGGCCCAATATAACT-TG--ACTTGTAATAGGGCTACAGCCCAGATTGACAC
1 TGATATGGGCTAGGCCCAGTAT-ACTCTGATACTTGTAATAGGGCTACAGCCCAGATTAACAC
* ** * *
7949513 TGATATGGGCTAGGCCCAGTATACTCTGATAC-TGTAA-GGGGCTATGGCCCAGATTAATAT
1 TGATATGGGCTAGGCCCAGTATACTCTGATACTTGTAATAGGGCTACAGCCCAGATTAACAC
*
7949573 TGATATGGGCTAAGGCCTAG-ATAGCTCTGAT
1 TGATATGGGCT-AGGCCCAGTATA-CTCTGAT
7949604 TTCTGAATAG
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
59 3 0.04
60 53 0.69
61 19 0.25
62 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (62 bp):
TGATATGGGCTAGGCCCAGTATACTCTGATACTTGTAATAGGGCTACAGCCCAGATTAACAC
Found at i:7950752 original size:42 final size:41
Alignment explanation
Indices: 7950690--7950814 Score: 162
Period size: 42 Copynumber: 3.0 Consensus size: 41
7950680 TTCGTTTTCT
** * *
7950690 TGATGCCATAGTTCAACTATGGTCTTACACAGCTTCACATAA
1 TGATGCCATAGCCCAGCTATGGTCTTACACAGATTCACAT-A
* *
7950732 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TGATGCCATAGCCCAGCTATGGTCTTACACAGATTCACATA
*
7950773 TCGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACATA
1 T-GATGCCATAGCCCAGCTATGGTCTTACACAGATTCACATA
7950814 T
1 T
7950815 CTCACTGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
41 10 0.14
42 63 0.86
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (41 bp):
TGATGCCATAGCCCAGCTATGGTCTTACACAGATTCACATA
Found at i:7950845 original size:88 final size:90
Alignment explanation
Indices: 7950732--7950899 Score: 216
Period size: 88 Copynumber: 1.9 Consensus size: 90
7950722 CTTCACATAA
* * *
7950732 TGATGCCATAGCCCAGCTATGGTCTTACACA-TATTCATATAT-C-GATGCCATAGCCCAGCTAT
1 TGATGCCATAGCCCAGATATGGTCTTACACAGTA-GCATATATACTGATGCCATAGCCCAGATAT
7950794 GGTCTTACACGAATCACATATCTCAC
65 GGTCTTACACGAATCACATATCTCAC
* * *
7950820 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACTGATGCCATATCCCAGAT
1 TGATGCCATAGCCCAGATATGGTCTTACACAGTAGCATATAT---ACTGATGCCATAGCCCAGAT
*
7950885 ATGGTCTTATACGAA
63 ATGGTCTTACACGAA
7950900 AATCACTTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
88 35 0.52
89 2 0.03
92 1 0.01
93 29 0.43
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (90 bp):
TGATGCCATAGCCCAGATATGGTCTTACACAGTAGCATATATACTGATGCCATAGCCCAGATATG
GTCTTACACGAATCACATATCTCAC
Found at i:7950875 original size:47 final size:46
Alignment explanation
Indices: 7950775--7950899 Score: 178
Period size: 47 Copynumber: 2.7 Consensus size: 46
7950765 TTCATATATC
* * * * *
7950775 GATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACT
* *
7950821 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACT
1 GATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACACT
7950868 GATGCCATATCCCAGATATGGTCTTATACGAA
1 GATGCCATATCCCAGATATGGTCTTATACGAA
7950900 AATCACTTGT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
46 28 0.40
47 42 0.60
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACT
Found at i:7951006 original size:30 final size:31
Alignment explanation
Indices: 7950922--7951038 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
7950912 CTTGTCACTT
* * *
7950922 GTAGCCGAAGCTACCACTATTCACAGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
*
7950953 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
*
7950984 GTAGCTGAAGCTACCA-TTTTCACTAATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
7951014 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCTGAAGCTACCACTTTTCACT
7951039 TGTCATTTGT
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
30 29 0.36
31 51 0.64
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTGATCAG
Found at i:7951018 original size:61 final size:62
Alignment explanation
Indices: 7950922--7951038 Score: 184
Period size: 61 Copynumber: 1.9 Consensus size: 62
7950912 CTTGTCACTT
7950922 GTAGCCGAAGCTACCACTATTCACAGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACAGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
* * *
7950984 GTAGCTGAAGCTACCA-TTTTCACTA-ATCAGGTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTATTCAC-AGATCAGGTAGCAGAAGCTACCACTTTTCACT
7951039 TGTCATTTGT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
61 35 0.69
62 16 0.31
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTATTCACAGATCAGGTAGCAGAAGCTACCACTTTTCACTGATCAG
Found at i:7951189 original size:50 final size:50
Alignment explanation
Indices: 7951014--7951187 Score: 260
Period size: 50 Copynumber: 3.5 Consensus size: 50
7951004 CACTAATCAG
* * * *
7951014 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
7951065 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
7951115 GTAGCCGAAGCTATTACTTATCA-TTTCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTT-CATTTGTCCTTGATCAGATAAGT
7951165 GTAGCCGAAGCTATCACTTATCA
1 GTAGCCGAAGCTATCACTTATCA
7951188 TTGTTGCCAT
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
49 3 0.03
50 86 0.77
51 23 0.21
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:7953504 original size:18 final size:18
Alignment explanation
Indices: 7953481--7953517 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7953471 TAATTTACTA
7953481 CTTAGACACTAATATGCT
1 CTTAGACACTAATATGCT
7953499 CTTAGACACTAATATGCT
1 CTTAGACACTAATATGCT
7953517 C
1 C
7953518 GATCAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.32
Consensus pattern (18 bp):
CTTAGACACTAATATGCT
Found at i:7954574 original size:17 final size:16
Alignment explanation
Indices: 7954543--7954587 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
7954533 TAAAACTTCA
* *
7954543 GTTTTTTTTAATTCTCT
1 GTTTTTTGTATTTCT-T
7954560 GTTTTTTGTATTTCTT
1 GTTTTTTGTATTTCTT
7954576 GATTTTTTGTAT
1 G-TTTTTTGTAT
7954588 ATGTGTTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 2 0.08
17 23 0.92
ACGTcount: A:0.11, C:0.07, G:0.11, T:0.71
Consensus pattern (16 bp):
GTTTTTTGTATTTCTT
Found at i:7955187 original size:27 final size:27
Alignment explanation
Indices: 7955149--7955236 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
7955139 TTTTCTTCAT
*
7955149 GTTTTTGAATAACATAAAGAACTATGA
1 GTTTTTGAATAACATAAAGGACTATGA
7955176 GTTTTTGAATAACATGAAATCAAGGACTATG-
1 GTTTTTGAATAACAT---A--AAGGACTATGA
7955207 GTTTTTGAATAAC--AAAGGACTATGA
1 GTTTTTGAATAACATAAAGGACTATGA
7955232 GTTTT
1 GTTTT
7955237 GATTTTTTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 14
0.78 0.01 0.20
Matches are distributed among these distances:
24 10 0.19
25 5 0.09
26 1 0.02
27 15 0.28
30 1 0.02
31 13 0.24
32 9 0.17
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.35
Consensus pattern (27 bp):
GTTTTTGAATAACATAAAGGACTATGA
Found at i:7955661 original size:20 final size:22
Alignment explanation
Indices: 7955620--7955670 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
7955610 TACTATTAAT
7955620 AATTATATTAATATTGTTATTA
1 AATTATATTAATATTGTTATTA
*
7955642 AATTATA-TATTATT-TTATTA
1 AATTATATTAATATTGTTATTA
*
7955662 AATTGTATT
1 AATTATATT
7955671 TAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 12 0.46
21 7 0.27
22 7 0.27
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
AATTATATTAATATTGTTATTA
Found at i:7955939 original size:16 final size:16
Alignment explanation
Indices: 7955920--7955961 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7955910 ATTACAGTTA
*
7955920 TATTCTATTACAACTC
1 TATTCAATTACAACTC
* *
7955936 TATTCCATTACAGCTC
1 TATTCAATTACAACTC
7955952 TATTCAATTA
1 TATTCAATTA
7955962 TAGCCTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43
Consensus pattern (16 bp):
TATTCAATTACAACTC
Found at i:7957855 original size:27 final size:27
Alignment explanation
Indices: 7957817--7957868 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
7957807 TCATGACGTG
**
7957817 TTTTTGGTGTTTTCGTGATGTTTATCA
1 TTTTTGGTGTTTTCGCAATGTTTATCA
7957844 TTTTTGGTGTTTTCGCAATGTTTAT
1 TTTTTGGTGTTTTCGCAATGTTTAT
7957869 ATAAACTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.12, C:0.08, G:0.21, T:0.60
Consensus pattern (27 bp):
TTTTTGGTGTTTTCGCAATGTTTATCA
Found at i:7961291 original size:2 final size:2
Alignment explanation
Indices: 7961284--7961336 Score: 67
Period size: 2 Copynumber: 28.0 Consensus size: 2
7961274 ATATTAAAAG
* *
7961284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT GT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7961325 AT A- AT AT A- AT AT
1 AT AT AT AT AT AT AT
7961337 TAAAATATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
1 3 0.07
2 41 0.93
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7962668 original size:2 final size:2
Alignment explanation
Indices: 7962661--7962706 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
7962651 GATATGTAAA
*
7962661 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7962703 AT AT
1 AT AT
7962707 GTACATAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7962711 original size:8 final size:8
Alignment explanation
Indices: 7962663--7962713 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
7962653 TATGTAAAAT
*
7962663 ATATATAT
1 ATATATAC
*
7962671 ATATATAT
1 ATATATAC
*
7962679 ATATATAT
1 ATATATAC
*
7962687 ATATATAT
1 ATATATAC
7962695 ATATATAC
1 ATATATAC
*
7962703 ATATGTAC
1 ATATATAC
7962711 ATA
1 ATA
7962714 AAATATACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 41 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (8 bp):
ATATATAC
Found at i:7964432 original size:14 final size:14
Alignment explanation
Indices: 7964421--7964447 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7964411 TTTTGAAAGG
7964421 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
7964435 CAGAAATTGAAAA
1 CAGAAATTGAAAA
7964448 TACCTCGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:7964449 original size:92 final size:90
Alignment explanation
Indices: 7964335--7964523 Score: 263
Period size: 92 Copynumber: 2.1 Consensus size: 90
7964325 TTAATTTTTT
* *
7964335 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGA-CCTAAGGCTCAACTCACCTCTCGCAATA
* *
7964399 TGAGTCAATTTTTTTTGAAAGGCAGAAA
65 TAAGTCAA-TTTTTTTGAAA-ACAGAAA
* * *
7964427 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATAT
**
7964492 AAGTTGATTTTTTTGAAAACAGAAA
66 AAGTCAATTTTTTTGAAAACAGAAA
7964517 TTGAAAA
1 TTGAAAA
7964524 TACCTCAACG
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
90 13 0.15
91 13 0.15
92 61 0.70
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (90 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCTCTCGCAATAT
AAGTCAATTTTTTTGAAAACAGAAA
Found at i:7964607 original size:72 final size:73
Alignment explanation
Indices: 7964431--7965114 Score: 768
Period size: 72 Copynumber: 9.2 Consensus size: 73
7964421 CAGAAATTGA
** * *
7964431 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATAAGT
1 AAAACAGAAATTGAAAATACCTCCACGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGT
7964496 TGATTTTTTTG
64 TGA-TTTTTTG
* ** **
7964507 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCCACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
7964572 A-ATTTTG
66 ATTTTTTG
* * *
7964579 AAAACAGAAATTGAAATTACCTCCACGTGTCCCGAGGCTTAACTCAACTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCCACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
7964644 ATTTTTTTG
66 A-TTTTTTG
* ** ** *
7964653 AAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTTTCAATATAAG
1 AAA-ACAGAAATTGAAAATACCTC--CACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
7964718 TTGATTTTTTTG
63 TTGA-TTTTTTG
* * ** * ** *
7964730 AAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCCACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
7964795 A-ATTTTG
66 ATTTTTTG
* *
7964802 AAAACAGAAATTGAAATTACCT-CAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCCA-CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
7964866 GATTTTTTTG
65 GA-TTTTTTG
* ** * *
7964876 AAAGACAGAAATTGAAAATACCTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATATAAG
1 AAA-ACAGAAATTGAAAATACCTC--CACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
7964941 TTGATTTTTTTG
63 TTGA-TTTTTTG
* ** **
7964953 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCCACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
7965018 A-ATTTTG
66 ATTTTTTG
* * * *
7965025 AAAACATAAATTGAAATTACCT-CAGCGTGTCCCGAGGGTCAACTAACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAATACCTCCA-CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
7965089 GA-TTTTTG
65 GATTTTTTG
*
7965097 AAAAGCATAAATTGAAAA
1 AAAA-CAGAAATTGAAAA
7965115 AACATTAATT
Statistics
Matches: 518, Mismatches: 76, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
71 2 0.00
72 194 0.37
73 12 0.02
74 112 0.22
75 37 0.07
76 67 0.13
77 92 0.18
78 2 0.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCCACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:7964822 original size:223 final size:223
Alignment explanation
Indices: 7964427--7965254 Score: 1208
Period size: 223 Copynumber: 3.7 Consensus size: 223
7964417 AAGGCAGAAA
* * *
7964427 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
7964491 TAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
65 TAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
*
7964556 CTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCCA-CGTGTCCCGAGGCTTA
130 CTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT-CAGCGTGTCCCGAGGCTCA
7964620 ACTCAACTCTCGCAATATGAGTTGATTTTT
194 ACTCAACTCTCGCAATATGAGTTGATTTTT
**
7964650 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTTTCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
* *
7964715 AAGTTGATTTTTTTGAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTTC
66 AAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
*
7964780 TCACAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
131 TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
7964845 TCACCTCTCACAATATGAGTTGATTTTT
196 TCAACTCTCGCAATATGAGTTGATTTTT
*
7964873 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
7964938 AAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
66 AAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
* *
7965003 TCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAGCGTGTCCCGAGGGTCAAC
131 TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
7965068 T-AACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAT
196 TCAA-CTCTCGCAATATGAGTTGA-TTTT--------T
* ** ** *
7965105 AAATTGAAAAAACATTAATTGAAAATACCTCAGC--GTGTCCCGAGACTCAACTCACCTCTCGCA
1 ---TTG-AAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCA
* * *
7965168 ATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTC-A-GTGTCTTGAGGCTCAACTC
62 ATATAAGTTGATTTTTTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
*
7965229 ACTTT-TCGCAATATGAGTTGATTTTT
126 A-TTTCTCGCAATATGAGTTGAATTTT
7965255 TTGAAACATA
Statistics
Matches: 555, Mismatches: 32, Indels: 28
0.90 0.05 0.05
Matches are distributed among these distances:
222 3 0.01
223 411 0.74
224 7 0.01
231 40 0.07
232 12 0.02
233 20 0.04
234 35 0.06
235 3 0.01
236 24 0.04
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (223 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
AAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTC
TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
TCAACTCTCGCAATATGAGTTGATTTTT
Found at i:7965156 original size:160 final size:156
Alignment explanation
Indices: 7964953--7965344 Score: 547
Period size: 160 Copynumber: 2.5 Consensus size: 156
7964943 GATTTTTTTG
* * * **
7964953 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
7965018 AATTTTGAAAACATAAATTGAAATTACCTCAGCGTGTCCCGAGGGTCAACTAACCTCTCGCAATA
66 AATTTTGAAAACAAAAATTGAAATTACCTCA--GTGTCCCGAGGCTCAACTAACCTCTCGCAATA
7965083 TGAGTTGA-TTTTTGAAAAGCATAAATTGAA
129 TGAGTTGATTTTTTG-AAA-CATAAATT-AA
** * *
7965113 AAAACATTAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* ** * * *
7965178 ATTTTTGACAAACAAAAATTGAAATTACCTCAGTGTCTTGAGGCTCAACTCACTTTTCGCAATAT
66 AATTTTGA-AAACAAAAATTGAAATTACCTCAGTGTCCCGAGGCTCAACTAACCTCTCGCAATAT
7965243 GAGTTGATTTTTTTGAAACATAAATTAA
130 GAGTTGA-TTTTTTGAAACATAAATTAA
7965271 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
7965336 -A-TTTGAAAA
66 AATTTTGAAAA
7965345 GTAGAATTTG
Statistics
Matches: 208, Mismatches: 21, Indels: 11
0.87 0.09 0.05
Matches are distributed among these distances:
155 3 0.01
156 5 0.02
158 63 0.30
159 42 0.20
160 67 0.32
161 28 0.13
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (156 bp):
AAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
AATTTTGAAAACAAAAATTGAAATTACCTCAGTGTCCCGAGGCTCAACTAACCTCTCGCAATATG
AGTTGATTTTTTGAAACATAAATTAA
Found at i:7965174 original size:88 final size:88
Alignment explanation
Indices: 7965025--7965201 Score: 284
Period size: 88 Copynumber: 2.0 Consensus size: 88
7965015 TTGAATTTTG
* **
7965025 AAAACATAAATTGAAATTACCTCAGCGTGTCCCGAGGGTCAACTAACCTCTCGCAATATGAGTTG
1 AAAACATAAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTAACCTCTCGCAATATGAGTTG
*
7965090 ATTTTTGA-AAAGCATAAATTGAA
66 ATTTTTGACAAA-CAAAAATTGAA
* *
7965113 AAAACATTAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACATAAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTAACCTCTCGCAATATGAGTTG
7965178 ATTTTTGACAAACAAAAATTGAA
66 ATTTTTGACAAACAAAAATTGAA
7965201 A
1 A
7965202 TTACCTCAGT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
88 79 0.96
89 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (88 bp):
AAAACATAAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTAACCTCTCGCAATATGAGTTG
ATTTTTGACAAACAAAAATTGAA
Found at i:7965262 original size:71 final size:72
Alignment explanation
Indices: 7965121--7965254 Score: 198
Period size: 71 Copynumber: 1.9 Consensus size: 72
7965111 AAAAAACATT
7965121 AATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCA-CGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
7965186 CAAACAAA
65 CAAACAAA
* ** * * *
7965194 AATTGAAATTACCTCA-GTGTCTTGAGGCTCAACTCACTTTTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCACGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTT
7965255 TTGAAACATA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 40 0.73
73 15 0.27
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.32
Consensus pattern (72 bp):
AATTGAAAATACCTCACGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
AAACAAA
Found at i:7965268 original size:71 final size:72
Alignment explanation
Indices: 7965114--7965273 Score: 196
Period size: 71 Copynumber: 2.2 Consensus size: 72
7965104 TAAATTGAAA
*
7965114 AAACATTAATTGAAAATACCTCAGCGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTGAAAATACCTCA-CGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGA
7965179 TTTTTGAC
65 TTTTTGAC
* * ** * * *
7965187 AAACAAAAATTGAAATTACCTCA-GTGTCTTGAGGCTCAACTCACTTTTCGCAATATGAGTTGAT
1 AAACATAAATTGAAAATACCTCACGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
***
7965251 TTTTTTG
66 TTTTGAC
*
7965258 AAACATAAATTAAAAA
1 AAACATAAATTGAAAA
7965274 ACAAAAATTG
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
71 53 0.73
73 20 0.27
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (72 bp):
AAACATAAATTGAAAATACCTCACGTGTCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAC
Found at i:7965370 original size:85 final size:82
Alignment explanation
Indices: 7965187--7965343 Score: 226
Period size: 87 Copynumber: 1.9 Consensus size: 82
7965177 GATTTTTGAC
* * * *
7965187 AAACAAAAATTGAAATTACCTCAGTGTCTTGAGGCTCAACTCACTTTTCGCAATATGAGTTGATT
1 AAACAAAAATTGAAAATACCTCAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
7965252 TTTTTGAAACATAAATTAAA
64 -TTTTGAAACATAAATTAAA
7965272 AAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAAAAATTGAAAATACCTCA--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
7965337 -TTTGAAA
64 TTTTGAAA
7965344 AGTAGAATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
83 7 0.11
85 22 0.33
87 37 0.56
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (82 bp):
AAACAAAAATTGAAAATACCTCAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTGAAACATAAATTAAA
Found at i:7965554 original size:100 final size:100
Alignment explanation
Indices: 7965264--7965558 Score: 386
Period size: 100 Copynumber: 3.0 Consensus size: 100
7965254 TTTGAAACAT
* * * *
7965264 AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
* *
7965329 TGAGTTGA--TTTGAAAAG-TAGAATTTGTAAGGCAA
66 TGAGTTGATTTTTGAAAAGATA-AA-TTGAAAAGCAA
* * *
7965363 AAATTGAAAAACAGAAATTCAAAATACCTCAGCGTGCCCCGAGGCTGAACTCACCTCTCGCAATA
1 AAATTGAAAAACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
*
7965428 TGAGTTGATTTTTGAAAA-ATGAAAATT-AAAAGCAG
66 TGAGTTGATTTTTGAAAAGAT--AAATTGAAAAGCAA
* *
7965463 AAATTGAAAAACAAAAATTAAAAATACCTCGGCGTGCCCCGATGCT-AAGCTCACCTCTCGCAAT
1 AAATTGAAAAACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAA-CTCACCTCTCGCAAT
7965527 ATGAGTTGATTTTTGAAAAGCATAAATTGAAA
65 ATGAGTTGATTTTTGAAAAG-ATAAATTGAAA
7965559 TTACCTTAGC
Statistics
Matches: 174, Mismatches: 13, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
99 69 0.40
100 86 0.49
101 14 0.08
102 4 0.02
103 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (100 bp):
AAATTGAAAAACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTGAAAAGATAAATTGAAAAGCAA
Found at i:7965564 original size:73 final size:74
Alignment explanation
Indices: 7965466--7965633 Score: 223
Period size: 73 Copynumber: 2.3 Consensus size: 74
7965456 AAAGCAGAAA
* * * * * *
7965466 TTGAAAAACAAAAATTAAAAATACCTCGGCGTGCCCCGATGCT-AAGCTCACCTCTCGCAATATG
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAA-CTCACCTCTCACAATATG
7965530 AGTTGA-TTT
65 AGTTGATTTT
* * * *
7965539 TTGAAAAGCATAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
7965604 GTTGATTTT
66 GTTGATTTT
7965613 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
7965634 AACGGATATT
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
73 57 0.70
74 25 0.30
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTT
Found at i:7969430 original size:40 final size:40
Alignment explanation
Indices: 7969375--7969584 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
7969365 AACATTGGAA
7969375 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
7969415 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
7969455 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
7969495 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
7969534 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
7969575 CTATATCCGG
1 ATATATCCGG
7969585 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:7977565 original size:40 final size:40
Alignment explanation
Indices: 7977510--7977716 Score: 312
Period size: 40 Copynumber: 5.2 Consensus size: 40
7977500 AACATTGGAA
7977510 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
7977550 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
7977590 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
7977630 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
7977669 A-A-ATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
7977707 CTATATCCGG
1 ATATATCCGG
7977717 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
37 27 0.18
38 1 0.01
39 3 0.02
40 120 0.79
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:7984739 original size:16 final size:16
Alignment explanation
Indices: 7984718--7984748 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7984708 GAGTACGGAT
7984718 ATGCATGAATGAATGG
1 ATGCATGAATGAATGG
7984734 ATGCATGAATGAATG
1 ATGCATGAATGAATG
7984749 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.29, T:0.26
Consensus pattern (16 bp):
ATGCATGAATGAATGG
Found at i:7984743 original size:12 final size:12
Alignment explanation
Indices: 7984726--7984756 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7984716 ATATGCATGA
*
7984726 ATGAATGGATGC
1 ATGAATGAATGC
7984738 ATGAATGAATGC
1 ATGAATGAATGC
7984750 ATGAATG
1 ATGAATG
7984757 TCAAATGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.29, T:0.26
Consensus pattern (12 bp):
ATGAATGAATGC
Found at i:7986776 original size:2 final size:2
Alignment explanation
Indices: 7986718--7986757 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7986708 ATATGGTATT
*
7986718 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7986758 ATAGTATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7987654 original size:40 final size:39
Alignment explanation
Indices: 7987545--7987697 Score: 243
Period size: 40 Copynumber: 3.9 Consensus size: 39
7987535 ATTCCACTCT
* *
7987545 CCCCATACTACTTTGTTTTATTATTAATTAAAACTACTC
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTATTC
*
7987584 CCTCATACTATTTTGTTTTATTATTAATTAAAACTATTC
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTATTC
*
7987623 CCCCATACTATTTTGTTTTTATTATTAATTAAAACCATTC
1 CCCCATACTATTTTG-TTTTATTATTAATTAAAACTATTC
*
7987663 CCCCATACTATTTTGTTTTTATTATTGATTAAAAC
1 CCCCATACTATTTTG-TTTTATTATTAATTAAAAC
7987698 CATACTTTAT
Statistics
Matches: 107, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 50 0.47
40 57 0.53
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (39 bp):
CCCCATACTATTTTGTTTTATTATTAATTAAAACTATTC
Found at i:7987675 original size:79 final size:79
Alignment explanation
Indices: 7987545--7987697 Score: 245
Period size: 79 Copynumber: 1.9 Consensus size: 79
7987535 ATTCCACTCT
* *
7987545 CCCCATACTACTTTGTTTTATTATTAATTAAAACTACTCCCTCATACTATTTTG-TTTTATTATT
1 CCCCATACTACTTTGTTTTATTATTAATTAAAACCACTCCCCCATACTATTTTGTTTTTATTATT
7987609 AATTAAAACTATTC
66 AATTAAAACTATTC
* *
7987623 CCCCATACTATTTTGTTTTTATTATTAATTAAAACCATTCCCCCATACTATTTTGTTTTTATTAT
1 CCCCATACTACTTTG-TTTTATTATTAATTAAAACCACTCCCCCATACTATTTTGTTTTTATTAT
*
7987688 TGATTAAAAC
65 TAATTAAAAC
7987698 CATACTTTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
78 14 0.21
79 36 0.53
80 18 0.26
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (79 bp):
CCCCATACTACTTTGTTTTATTATTAATTAAAACCACTCCCCCATACTATTTTGTTTTTATTATT
AATTAAAACTATTC
Found at i:7988818 original size:13 final size:13
Alignment explanation
Indices: 7988800--7988824 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7988790 GAGTTTTGAG
7988800 TTCTTCGATCTGC
1 TTCTTCGATCTGC
7988813 TTCTTCGATCTG
1 TTCTTCGATCTG
7988825 TTCCCTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.16, T:0.48
Consensus pattern (13 bp):
TTCTTCGATCTGC
Found at i:7988871 original size:44 final size:44
Alignment explanation
Indices: 7988807--7989025 Score: 232
Period size: 44 Copynumber: 5.0 Consensus size: 44
7988797 GAGTTCTTCG
*
7988807 ATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* *
7988850 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAA
** * * * * *
7988892 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAA
7988938 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
* * * *
7988982 ATCTACTGTTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCCA
1 ATCTGCT-ATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCA
7989026 TGCTGAAATC
Statistics
Matches: 147, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.01
43 20 0.14
44 78 0.53
45 45 0.31
46 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAA
Found at i:7989051 original size:133 final size:131
Alignment explanation
Indices: 7988806--7989051 Score: 411
Period size: 133 Copynumber: 1.9 Consensus size: 131
7988796 TGAGTTCTTC
*
7988806 GATCTGCTTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 GATCTGCTTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTGTT
*
7988871 CCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTC
66 CCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTC
7988936 A
131 A
* * *
7988937 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTGTTTTTCAACTTG
1 GATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACT-ATCTTCAACTTG
* *
7989002 TTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTACTTCACT
64 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACT
7989052 ATAACTTAGG
Statistics
Matches: 106, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
131 8 0.08
132 41 0.39
133 57 0.54
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (131 bp):
GATCTGCTTCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTGTT
CCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTC
A
Done.