Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 301 of 427
Found at i:87235679 original size:40 final size:40
Alignment explanation
Indices: 87235634--87235756 Score: 174
Period size: 40 Copynumber: 3.1 Consensus size: 40
87235624 TAATAGGGGT
* * *
87235634 ACCAAAGTGCAAATAGAGGCATAATTGTACAATCAGAGGC
1 ACCAAAGTGCAAAAAGAGGCACAATTGTGCAATCAGAGGC
* *
87235674 ACCAAACTGCAAACAGAGGCACAATTGTGCAATCAGAGGC
1 ACCAAAGTGCAAAAAGAGGCACAATTGTGCAATCAGAGGC
* * *
87235714 ACCAAAGTGCAAAAAAAGGCACAATTGTGCAATCTGAAGC
1 ACCAAAGTGCAAAAAGAGGCACAATTGTGCAATCAGAGGC
87235754 ACC
1 ACC
87235757 GAAGCACAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.42, C:0.22, G:0.21, T:0.15
Consensus pattern (40 bp):
ACCAAAGTGCAAAAAGAGGCACAATTGTGCAATCAGAGGC
Found at i:87235715 original size:20 final size:20
Alignment explanation
Indices: 87235648--87235747 Score: 87
Period size: 20 Copynumber: 5.0 Consensus size: 20
87235638 AAGTGCAAAT
* *
87235648 AGAGGCATAATTGTACAATC
1 AGAGGCACAATTGTGCAATC
** *
87235668 AGAGGCACCAA-ACTGCAAAC
1 AGAGGCA-CAATTGTGCAATC
87235688 AGAGGCACAATTGTGCAATC
1 AGAGGCACAATTGTGCAATC
* **
87235708 AGAGGCACCAA-AGTGCAAAA
1 AGAGGCA-CAATTGTGCAATC
*
87235728 AAAGGCACAATTGTGCAATC
1 AGAGGCACAATTGTGCAATC
87235748 TGAAGCACCG
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
19 6 0.10
20 50 0.82
21 5 0.08
ACGTcount: A:0.42, C:0.21, G:0.22, T:0.15
Consensus pattern (20 bp):
AGAGGCACAATTGTGCAATC
Found at i:87239897 original size:34 final size:34
Alignment explanation
Indices: 87239859--87239927 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
87239849 ACACATTTTG
87239859 TTCACATTAATATTCCTTTTGTTTACCATTGCAT
1 TTCACATTAATATTCCTTTTGTTTACCATTGCAT
87239893 TTCACATTAATATTCCTTTTGTTTACCATTGCAT
1 TTCACATTAATATTCCTTTTGTTTACCATTGCAT
87239927 T
1 T
87239928 CTTACCATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.20, G:0.06, T:0.51
Consensus pattern (34 bp):
TTCACATTAATATTCCTTTTGTTTACCATTGCAT
Found at i:87245049 original size:15 final size:15
Alignment explanation
Indices: 87245021--87245055 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
87245011 GAAAATTATT
87245021 TTTTATTAATTAATA
1 TTTTATTAATTAATA
87245036 TTTTAGTTAA-TAATA
1 TTTTA-TTAATTAATA
87245051 TTTTA
1 TTTTA
87245056 AAAAAACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (15 bp):
TTTTATTAATTAATA
Found at i:87245582 original size:25 final size:25
Alignment explanation
Indices: 87245554--87245604 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
87245544 AAGTAGTCAT
87245554 TTGAGACTTGTTTTGTTATATACAG
1 TTGAGACTTGTTTTGTTATATACAG
87245579 TTGAGACTTGTTTTGTTATATACAG
1 TTGAGACTTGTTTTGTTATATACAG
87245604 T
1 T
87245605 AGTAAAGCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.49
Consensus pattern (25 bp):
TTGAGACTTGTTTTGTTATATACAG
Found at i:87250508 original size:52 final size:51
Alignment explanation
Indices: 87250445--87250554 Score: 132
Period size: 51 Copynumber: 2.1 Consensus size: 51
87250435 TAGAAATGGT
* * *
87250445 GAAAATAGAGAAACAGGAAA-CATTTGGAAATGATTATCGTTTTCTCTAAAAC
1 GAAAATGGAG-AA-AGGAAATCATCTGGAAATGATTATCGTTTTCTCCAAAAC
* * * *
87250497 GAAAATGGAGAAATGAAATCATCTGGAAATGATTTTGGTTTTCTCCAAAAT
1 GAAAATGGAGAAAGGAAATCATCTGGAAATGATTATCGTTTTCTCCAAAAC
87250548 GAAAATG
1 GAAAATG
87250555 AAAAATGACA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
50 5 0.10
51 36 0.72
52 9 0.18
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (51 bp):
GAAAATGGAGAAAGGAAATCATCTGGAAATGATTATCGTTTTCTCCAAAAC
Found at i:87250996 original size:20 final size:19
Alignment explanation
Indices: 87250940--87250997 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
87250930 AAATTACAAA
*
87250940 AAAAAATCAAAATAGTTT-T
1 AAAAATTCAAAATA-TTTAT
*
87250959 TAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
87250978 AAAAATTCTAAAATTTTTAT
1 AAAAATTC-AAAATATTTAT
87250998 TTTTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 3 0.09
19 20 0.61
20 10 0.30
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:87251141 original size:2 final size:2
Alignment explanation
Indices: 87251134--87251168 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
87251124 TTAACTAAAC
87251134 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
87251169 TATTTTGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:87254288 original size:24 final size:24
Alignment explanation
Indices: 87254256--87254305 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
87254246 CTCATAAAAG
87254256 TCTGGATAACACATATAGTTGTAC
1 TCTGGATAACACATATAGTTGTAC
87254280 TCTGGATAACACATATAGTTGTAC
1 TCTGGATAACACATATAGTTGTAC
87254304 TC
1 TC
87254306 AATAAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (24 bp):
TCTGGATAACACATATAGTTGTAC
Found at i:87255668 original size:12 final size:13
Alignment explanation
Indices: 87255647--87255687 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
87255637 TATAAGAATA
*
87255647 AAAGAGTAAAAAT
1 AAAGAATAAAAAT
87255660 -AAGAAT-AAAAT
1 AAAGAATAAAAAT
*
87255671 AAAGAATAAAAAG
1 AAAGAATAAAAAT
87255684 AAAG
1 AAAG
87255688 TAAAGACCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 5 0.21
12 11 0.46
13 8 0.33
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (13 bp):
AAAGAATAAAAAT
Found at i:87255691 original size:18 final size:18
Alignment explanation
Indices: 87255640--87255693 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
87255630 TATGAAATAT
87255640 AAGAAT-AAAAG--AGTA
1 AAGAATAAAAAGAAAGTA
* * *
87255655 AA-AATAAGAATAAAATA
1 AAGAATAAAAAGAAAGTA
87255672 AAGAATAAAAAGAAAGTA
1 AAGAATAAAAAGAAAGTA
87255690 AAGA
1 AAGA
87255694 CCCAAAGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 3 0.10
15 5 0.17
17 5 0.17
18 16 0.55
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (18 bp):
AAGAATAAAAAGAAAGTA
Found at i:87257472 original size:26 final size:26
Alignment explanation
Indices: 87257443--87257550 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
87257433 TGGTACAAAT
87257443 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87257469 TGATAATGGATTAGGTAAA-GATTCCA
1 TGATAATGGGTTAGGTAAATG-TTCCA
87257495 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87257521 TGGTAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87257547 TGAT
1 TGAT
87257551 GAGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 1 0.01
26 73 0.97
27 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87264561 original size:26 final size:26
Alignment explanation
Indices: 87264532--87264639 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
87264522 TGGTACAAAT
87264532 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87264558 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87264584 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
87264610 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87264636 TGAT
1 TGAT
87264640 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87271583 original size:21 final size:21
Alignment explanation
Indices: 87271552--87271607 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
87271542 AACAGCGGTG
* *
87271552 GCGGTGAGATTAGTTACTGTA
1 GCGGTAAGATTAGATACTGTA
* *
87271573 GTGGTAAGATTGGATACTGTA
1 GCGGTAAGATTAGATACTGTA
*
87271594 GCGGTGAGATTAGA
1 GCGGTAAGATTAGA
87271608 AACAATGAAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.27, C:0.07, G:0.36, T:0.30
Consensus pattern (21 bp):
GCGGTAAGATTAGATACTGTA
Found at i:87273619 original size:32 final size:32
Alignment explanation
Indices: 87273580--87273707 Score: 220
Period size: 32 Copynumber: 4.0 Consensus size: 32
87273570 CATAAAAAAT
87273580 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
* **
87273612 ATCATACATTAGGTTTACATATAAAAAAGTTT
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
*
87273644 ATCATACATTAGTTTTGCATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
87273676 ATCATACATTAGTTTTACATATAAAAAAGTAG
1 ATCATACATTAGTTTTACATATAAAAAAGTAG
87273708 TATAGTTATA
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 88 1.00
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.35
Consensus pattern (32 bp):
ATCATACATTAGTTTTACATATAAAAAAGTAG
Found at i:87274439 original size:7 final size:7
Alignment explanation
Indices: 87274427--87274453 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
87274417 CCTACAAAAC
87274427 ATGTTAA
1 ATGTTAA
87274434 ATGTTAA
1 ATGTTAA
87274441 ATGTTAA
1 ATGTTAA
87274448 ATGTTA
1 ATGTTA
87274454 TACTCAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (7 bp):
ATGTTAA
Found at i:87279059 original size:21 final size:22
Alignment explanation
Indices: 87279035--87279082 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
87279025 GATATTTGGG
*
87279035 TTAAATTGAG-TAGA-TTGATA
1 TTAAATTGAGTTAAATTTGATA
87279055 CTTAAA-TGAGTTAAATTTGATA
1 -TTAAATTGAGTTAAATTTGATA
87279077 TTAAAT
1 TTAAAT
87279083 AGATCAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 13 0.57
22 6 0.26
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.42
Consensus pattern (22 bp):
TTAAATTGAGTTAAATTTGATA
Found at i:87290730 original size:42 final size:42
Alignment explanation
Indices: 87290681--87290840 Score: 205
Period size: 42 Copynumber: 3.8 Consensus size: 42
87290671 CGCAGTACCA
*
87290681 ATGCCATATCCCAGATATGGTCTTACATGTAATCGCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCGCATATTG
* * * *
87290723 ACGCCATAACCCAGCTATGGTCTTACACGTAATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCGCATATTG
* * * * *
87290765 ATGCAATATCCCAGATATGGTTTTACACGAAAT-GTCGTATAG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCG-CATATTG
*
87290807 ATGCCATATCCTAGATATGGTCTTACACGTAATC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATC
87290841 ATAGTAACTC
Statistics
Matches: 98, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
42 98 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCGCATATTG
Found at i:87305915 original size:46 final size:46
Alignment explanation
Indices: 87305865--87306040 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
87305855 TGGTTGAGCA
87305865 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87305911 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
87305956 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
87306004 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87306041 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87306021 original size:93 final size:93
Alignment explanation
Indices: 87305862--87306033 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
87305852 GGATGGTTGA
* * *
87305862 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
87305927 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
87305955 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
87306020 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
87306034 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:87307525 original size:16 final size:17
Alignment explanation
Indices: 87307504--87307536 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
87307494 TCTCAAAAGA
*
87307504 ATAAAGATAA-CAAAAC
1 ATAAAGAAAACCAAAAC
87307520 ATAAAGAAAACCAAAAC
1 ATAAAGAAAACCAAAAC
87307537 TCTTGAAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.70, C:0.15, G:0.06, T:0.09
Consensus pattern (17 bp):
ATAAAGAAAACCAAAAC
Found at i:87312505 original size:25 final size:25
Alignment explanation
Indices: 87312474--87312521 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
87312464 TATCGATGTT
87312474 TCAGCTCATAAGAGCTTACTGTTTC
1 TCAGCTCATAAGAGCTTACTGTTTC
**
87312499 TCAGCTCATTGGAGCTTACTGTT
1 TCAGCTCATAAGAGCTTACTGTT
87312522 GCCACAGCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (25 bp):
TCAGCTCATAAGAGCTTACTGTTTC
Found at i:87314416 original size:21 final size:20
Alignment explanation
Indices: 87314378--87314416 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
87314368 CCTTTGAAAC
*
87314378 AGGGCACACGCTCATGTGGG
1 AGGGCACACGCCCATGTGGG
*
87314398 AGGGCAACACGCCCGTGTG
1 AGGGC-ACACGCCCATGTG
87314417 ACATTTCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.21, C:0.28, G:0.38, T:0.13
Consensus pattern (20 bp):
AGGGCACACGCCCATGTGGG
Found at i:87314611 original size:12 final size:12
Alignment explanation
Indices: 87314594--87314627 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
87314584 GCCATGACAT
87314594 GCCCGTGTCTTA
1 GCCCGTGTCTTA
87314606 GCCCGTGTCTTA
1 GCCCGTGTCTTA
87314618 GCCCGTGTCT
1 GCCCGTGTCT
87314628 AAAAACCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.06, C:0.35, G:0.26, T:0.32
Consensus pattern (12 bp):
GCCCGTGTCTTA
Found at i:87315807 original size:46 final size:47
Alignment explanation
Indices: 87315576--87315894 Score: 217
Period size: 46 Copynumber: 6.7 Consensus size: 47
87315566 GGTAAAATAT
* * * * *
87315576 CGATTCCATGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGC
* * *
87315623 CGATGCCATG-CCTCAGACATGGTCTTACACTGACTATAGTCATC-GAGGC
1 CGATGCCATGTCC-CAGACATGGTCTTACACTGGCT-TA--CATCTCAAGC
* * * * * * * * **
87315672 CAACGCCATATCCCAGGCGTGGTCTTATACTAG-TTATCGCATATCCGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA---CATCT-CAAGC
* * * *
87315722 TGATGCCATGTCCCAGATATGGTCTTACACTGAC--ACATCTCATAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA-AGC
* *
87315768 CGATG-CATGTCCCAGACAT-GTCTTCCACTGGCTTACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AAGC
* *
87315814 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCAA-GC
*
87315860 CGATGCCATCTCCCAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
87315895 CTCATAATGT
Statistics
Matches: 207, Mismatches: 48, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 62 0.30
47 46 0.22
48 18 0.09
49 25 0.12
50 30 0.14
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGC
Found at i:87315913 original size:94 final size:91
Alignment explanation
Indices: 87315720--87315944 Score: 242
Period size: 94 Copynumber: 2.4 Consensus size: 91
87315710 GCATATCCGT
* * * *
87315720 GCTGATGCCATGTCCCAGATATGGTCTTACACTG-ACACATCTCATAGACGATGCATGTCCCAGA
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGCTCTCATCTCATAGACGATGCATCTCCCAGA
* *
87315784 CATGTCTTCCACTGGCTTACATCTCGAG
64 CATGTCTTACACTGGCTTACATATCGAG
* * *
87315812 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCA-ATGCCGATGCCATCTCCCAG
1 GCTGATGCATGTCCCAGACATGTCTTACACT-GCTCTCATCTCATA-GACGATG-CATCTCCCAG
*
87315876 ACATGGTCTTACACTGGCTCT-CATAAT-GTG
63 ACAT-GTCTTACACTGGCT-TACAT-ATCGAG
*
87315906 GCTGATGCATGTCCCAGACATGTCTTACATTGGCTCTCA
1 GCTGATGCATGTCCCAGACATGTCTTACACT-GCTCTCA
87315945 ATGACCCTAT
Statistics
Matches: 112, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
90 10 0.09
91 15 0.13
92 19 0.17
93 13 0.12
94 53 0.47
95 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (91 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGCTCTCATCTCATAGACGATGCATCTCCCAGACA
TGTCTTACACTGGCTTACATATCGAG
Found at i:87315940 original size:46 final size:46
Alignment explanation
Indices: 87315768--87315944 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
87315758 ATCTCATAGA
* * *
87315768 CGATGCATGTCCCAGACATGTCTTCCACTGGCT-TACAT-CTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GTGGC
* *
87315814 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA--T-GC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTC--AT-AATGTGGC
*
87315860 CGATGCCATCTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTGGC
* *
87315908 TGATGCATGTCCCAGACATGTCTTACATTGGCTCTCA
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA
87315945 ATGACCCTAT
Statistics
Matches: 110, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
45 2 0.02
46 57 0.52
47 28 0.25
48 23 0.21
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGC
Found at i:87323560 original size:46 final size:46
Alignment explanation
Indices: 87323367--87323635 Score: 192
Period size: 46 Copynumber: 5.7 Consensus size: 46
87323357 GGGGTAAAAT
* *
87323367 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCAT-ATCTCAA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCGTCTCAAG
* * * * * * *
87323414 GTCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTGCATATC-CG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-T-CGTCTCAAG
* * *
87323463 CGCCGATGCCATGTCCCAGACATGGTCTTATACTGACACATC-TCGT--A-
1 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTC-TCGTC-TCAAG
* **
87323510 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCGTCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAG
* * *
87323556 GCCGATGCATGTCCCAGACATGTCGTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAG
*
87323602 GCCGATGCAATGGCCCAGACATGGTCTTACACTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTG
87323636 ACTCACAATG
Statistics
Matches: 180, Mismatches: 31, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
43 3 0.02
44 13 0.07
45 15 0.08
46 55 0.31
47 46 0.26
48 10 0.06
49 6 0.03
50 32 0.18
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAG
Found at i:87326231 original size:15 final size:16
Alignment explanation
Indices: 87326210--87326251 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
87326200 CATTACCCAA
87326210 AACCTAAAAAAAACT-
1 AACCTAAAAAAAACTC
*
87326225 TACCTAACTAAAAAACTC
1 AACCTAA--AAAAAACTC
87326243 AACCTAAAA
1 AACCTAAAA
87326252 TATAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
15 6 0.27
16 2 0.09
17 8 0.36
18 6 0.27
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.17
Consensus pattern (16 bp):
AACCTAAAAAAAACTC
Found at i:87326301 original size:9 final size:9
Alignment explanation
Indices: 87326287--87326312 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
87326277 ACACAATAAA
87326287 ATATTTATT
1 ATATTTATT
87326296 ATATTTATT
1 ATATTTATT
87326305 ATATTTAT
1 ATATTTAT
87326313 GTGTGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
ATATTTATT
Found at i:87326877 original size:18 final size:17
Alignment explanation
Indices: 87326833--87326879 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
87326823 AAAAGAATAG
87326833 AGAGAATAAAAATAAAA
1 AGAGAATAAAAATAAAA
*
87326850 ATA-AATTAAAGAATAAAA
1 AGAGAA-TAAA-AATAAAA
*
87326868 AGAGAGTAAAAA
1 AGAGAATAAAAA
87326880 AAACCAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
16 2 0.08
17 8 0.33
18 13 0.54
19 1 0.04
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (17 bp):
AGAGAATAAAAATAAAA
Found at i:87335958 original size:21 final size:21
Alignment explanation
Indices: 87335932--87335973 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
87335922 TGATATGCTC
87335932 TATTATAGTAGTTGTTTGGTA
1 TATTATAGTAGTTGTTTGGTA
*
87335953 TATTATAGTATTTGTTTGGTA
1 TATTATAGTAGTTGTTTGGTA
87335974 GCGGTTGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (21 bp):
TATTATAGTAGTTGTTTGGTA
Found at i:87341593 original size:25 final size:26
Alignment explanation
Indices: 87341539--87341595 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
87341529 AGATACAATT
* * *
87341539 TTTTGTAATTATTATTTTTTTGTTTG
1 TTTTGTAATTATTATTTATTTGTCTA
87341565 TTTTGTAA-TATTA-TTATTTGTCCTA
1 TTTTGTAATTATTATTTATTTGT-CTA
87341590 TTTTGT
1 TTTTGT
87341596 GGTTTTGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 7 0.26
25 12 0.44
26 8 0.30
ACGTcount: A:0.18, C:0.04, G:0.11, T:0.68
Consensus pattern (26 bp):
TTTTGTAATTATTATTTATTTGTCTA
Found at i:87345473 original size:49 final size:50
Alignment explanation
Indices: 87345413--87345538 Score: 157
Period size: 49 Copynumber: 2.5 Consensus size: 50
87345403 TTAAGTCGAT
* **
87345413 GCCATGTCCCAGACTTGGTCTTACACTGACTATCGTA-ATC-GAGGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACATATCTGAGGC-GAC
* * * * *
87345462 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCTGTGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACATATCTGAGGCGAC
87345512 GCCATGTCCCAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
87345539 AACACATCTC
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
49 32 0.48
50 32 0.48
51 3 0.04
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACATATCTGAGGCGAC
Found at i:87345672 original size:94 final size:91
Alignment explanation
Indices: 87345462--87345723 Score: 246
Period size: 94 Copynumber: 2.8 Consensus size: 91
87345452 CGAGGCTGAC
* *
87345462 GCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCTGTGTCGATGCCATGTCCCAGACA
1 GCCATGT-CCAGACATGGTCTTACACTGGCTCT-ACATATC-GAGCCGATG-CATGTCCCAGACA
*
87345527 TGGTCTTACACTAACACATCTCATAGTCAAT
62 T-GTCTTACACTAACACATCTCATAGCCAAT
* *
87345558 -CCATGTCCTAGACAT-ATCTTACACTGGCT-TACATCTCGAGACCGATGCATGTCCCAGACATG
1 GCCATGTCC-AGACATGGTCTTACACTGGCTCTACATATCGAG-CCGATGCATGTCCCAGACATG
* *** * * *
87345620 TCTTACACTATCTTTTGTCTTAATGCCGAT
64 TCTTACACTAACACATCTCAT-A-GCCAAT
* * *
87345650 GCCATGTACCAGACATGGTCTTACATTGGCTCT-CATAATATG-GCCGATGCATGTCTCAGACAT
1 GCCATGT-CCAGACATGGTCTTACACTGGCTCTACAT-AT-CGAGCCGATGCATGTCCCAGACAT
87345713 GTCTTACACTA
63 GTCTTACACTA
87345724 GCATACAAAT
Statistics
Matches: 139, Mismatches: 17, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
90 16 0.12
91 17 0.12
92 15 0.11
93 13 0.09
94 62 0.45
95 15 0.11
96 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (91 bp):
GCCATGTCCAGACATGGTCTTACACTGGCTCTACATATCGAGCCGATGCATGTCCCAGACATGTC
TTACACTAACACATCTCATAGCCAAT
Found at i:87357664 original size:26 final size:26
Alignment explanation
Indices: 87357635--87357742 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
87357625 TGGTACAAAT
87357635 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87357661 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87357687 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
87357713 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
87357739 TGAT
1 TGAT
87357743 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:87362634 original size:32 final size:32
Alignment explanation
Indices: 87362589--87362651 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
87362579 GAACGTCTTA
87362589 CTCATCCTCTTTCCTAATTCTCCATTTTCATG
1 CTCATCCTCTTTCCTAATTCTCCATTTTCATG
*
87362621 CTCATCCTTTTTCCTAATTCTCCATTTTCAT
1 CTCATCCTCTTTCCTAATTCTCCATTTTCAT
87362652 AGGCACCATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.16, C:0.33, G:0.02, T:0.49
Consensus pattern (32 bp):
CTCATCCTCTTTCCTAATTCTCCATTTTCATG
Found at i:87362648 original size:16 final size:16
Alignment explanation
Indices: 87362598--87362649 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
87362588 ACTCATCCTC
87362598 TTTCCTAATTCTCCAT
1 TTTCCTAATTCTCCAT
* ** *
87362614 TTTCAT-GCTCATCCTT
1 TTTCCTAATTC-TCCAT
87362630 TTTCCTAATTCTCCAT
1 TTTCCTAATTCTCCAT
87362646 TTTC
1 TTTC
87362650 ATAGGCACCA
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
15 2 0.08
16 22 0.85
17 2 0.08
ACGTcount: A:0.15, C:0.31, G:0.02, T:0.52
Consensus pattern (16 bp):
TTTCCTAATTCTCCAT
Found at i:87366295 original size:44 final size:44
Alignment explanation
Indices: 87366230--87366320 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
87366220 TAAGATGGAA
87366230 CTTTTTATTATTATCTAAATTGTATGATAAATATTTAACTTGTT
1 CTTTTTATTATTATCTAAATTGTATGATAAATATTTAACTTGTT
* *
87366274 CTTTTTATTATTATCTGAATTGTATGATAAATATTTGACTTGTT
1 CTTTTTATTATTATCTAAATTGTATGATAAATATTTAACTTGTT
87366318 CTT
1 CTT
87366321 AATTATGTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.55
Consensus pattern (44 bp):
CTTTTTATTATTATCTAAATTGTATGATAAATATTTAACTTGTT
Found at i:87398789 original size:47 final size:47
Alignment explanation
Indices: 87398735--87398927 Score: 255
Period size: 47 Copynumber: 4.1 Consensus size: 47
87398725 TTAGGATTTT
** * *
87398735 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
87398782 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
87398829 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
87398876 ATGTGGTGAATATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
87398922 ATGTGA
1 ATGTGA
87398928 AATATGTATG
Statistics
Matches: 130, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
46 26 0.20
47 101 0.78
48 3 0.02
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:87398835 original size:22 final size:22
Alignment explanation
Indices: 87398764--87398835 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
87398754 GTATATATGA
87398764 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
87398786 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
87398811 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
87398833 GAT
1 GAT
87398836 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:87398836 original size:94 final size:93
Alignment explanation
Indices: 87398735--87399110 Score: 262
Period size: 96 Copynumber: 3.9 Consensus size: 93
87398725 TTAGGATTTT
** * *
87398735 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA-AC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAGAC
*
87398799 ATGCATATATGTGATAAGGCCGAATGGCCA
66 ATG--TATATGTGATAAAGCCGAATGGCCA
* * * * *
87398829 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAGAT
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAGAC
* *
87398894 ATGTATATGTGGTAAAGCCGAATGGCTA
66 ATGTATATGTGATAAAGCCGAATGGCCA
* ** * * * * ***
87398922 ATGTGA-AATATGTATGAGGTATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTGTA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGAGATAAGGCCGAATGGCCAATGTG--ATGAATA
* * *
87398984 TGAGATATGTATATGTGGTAAAGCCGAATGGCTA
60 TGAGACATGTATATGTGATAAAGCCGAATGGCCA
* * * * * *
87399018 ATGTGA-GATATGTATGAGATATGCATATGTG-G-TAAAGCTGAATGGTCAATGTGAAATATATA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGAGATAAGGCCGAATGGCCAATGTG--AT-GA-A
* *
87399080 TATGAGATATGTATATGTGGTAAAGCCGAAT
58 TATGAGACATGTATATGTGATAAAGCCGAAT
87399111 AGCTAGTGTG
Statistics
Matches: 241, Mismatches: 30, Indels: 18
0.83 0.10 0.06
Matches are distributed among these distances:
92 1 0.00
93 31 0.13
94 80 0.33
95 7 0.03
96 84 0.35
97 2 0.01
98 36 0.15
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (93 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAGAC
ATGTATATGTGATAAAGCCGAATGGCCA
Found at i:87398884 original size:25 final size:25
Alignment explanation
Indices: 87398809--87398884 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
87398799 ATGCATATAT
87398809 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
87398834 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
87398856 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
87398881 GTGA
1 GTGA
87398885 ATATGAGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:87398945 original size:48 final size:48
Alignment explanation
Indices: 87398886--87399129 Score: 382
Period size: 48 Copynumber: 5.0 Consensus size: 48
87398876 ATGTGGTGAA
87398886 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
87398934 TATGAGGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
87398982 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAGATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* * *
87399030 TATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG
* *
87399080 TATGAGATATGTATATGTGGTAAAGCCGAATAGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
87399128 TA
1 TA
87399130 GGCGATGTGC
Statistics
Matches: 178, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
47 1 0.01
48 134 0.75
49 3 0.02
50 39 0.22
51 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:87399127 original size:98 final size:96
Alignment explanation
Indices: 87398804--87399129 Score: 396
Period size: 96 Copynumber: 3.4 Consensus size: 96
87398794 TGAACATGCA
* * * * * *
87398804 TATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGAG-CATGCATATGTGTGATAAGG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGAGATATGCATATGTG-G-TAAAG
* * **
87398865 CCGAATGGCCAATGTG--GTGAATATGAGATATG
63 CCGAATGGCTAATGTGAAATTTATATGAGATATG
* *
87398897 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGGTATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
*
87398962 AATGGCTAATGTGAAATTTGTATGAGATATG
66 AATGGCTAATGTGAAATTTATATGAGATATG
* *
87398993 TATATGTGGTAAAGCCGAATGGCTAATGTGAGATATGTATGAGATATGCATATGTGGTAAAGCTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
87399058 AATGG-TCAATGTGAAATATATATATGAGATATG
66 AATGGCT-AATGTGAAAT-T-TATATGAGATATG
* *
87399091 TATATGTGGTAAAGCCGAATAGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
87399130 GGCGATGTGC
Statistics
Matches: 204, Mismatches: 20, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
92 1 0.00
93 31 0.15
94 19 0.09
95 6 0.03
96 98 0.48
97 1 0.00
98 48 0.24
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
AATGGCTAATGTGAAATTTATATGAGATATG
Found at i:87399165 original size:144 final size:143
Alignment explanation
Indices: 87398886--87399167 Score: 356
Period size: 146 Copynumber: 2.0 Consensus size: 143
87398876 ATGTGGTGAA
* * *
87398886 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGGTATGTATATG
1 TATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
* * * * *
87398951 TGGTAAAGCCGAATGGCTAATGTGAAATTTGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 TGGTAAAGCCGAATAGCTAATGTGAAATATGTAGGAGATATGTATATGTGGT-AAGCCGAACGAC
*
87399016 TAATGTGAGATATG
130 CAATGTGAGATATG
*
87399030 TATGAGATATGCATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTAT
1 TATGAGATATGCATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTAT
* * * *
87399094 ATGTGGTAAAGCCGAATAGCTAGTGTGAAATATGTAGGCGATGTGCGTATAT-T-GT-GGCCGAA
63 ATGTGGTAAAGCCGAATAGCTAATGTGAAATATGTAGGAGATAT--GTATATGTGGTAAGCCGAA
87399156 CGACCAATGTGA
126 CGACCAATGTGA
87399168 AAGGTGTGTA
Statistics
Matches: 119, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
143 1 0.01
144 52 0.44
145 2 0.02
146 57 0.48
147 1 0.01
148 6 0.05
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (143 bp):
TATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATG
TGGTAAAGCCGAATAGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAGCCGAACGACC
AATGTGAGATATG
Found at i:87399329 original size:37 final size:37
Alignment explanation
Indices: 87399275--87399417 Score: 241
Period size: 37 Copynumber: 3.9 Consensus size: 37
87399265 GGAAATATAT
*
87399275 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
87399312 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
87399349 TCCCGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
87399386 TCCGGGTAAGACCCGATAACTTCGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
87399418 CTTCGCCTGA
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:87403288 original size:79 final size:80
Alignment explanation
Indices: 87403200--87403353 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 80
87403190 AGCTCGGTTA
* * *
87403200 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTC
87403263 GGG-CTTAGCCCAGAAT
64 GGGACTTAGCCCAGAAT
** *
87403279 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
87403344 GACTTAGCCC
66 GACTTAGCCC
87403354 GGACATCATT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
78 3 0.05
79 51 0.77
80 12 0.18
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCAGAAT
Found at i:87403297 original size:39 final size:39
Alignment explanation
Indices: 87403172--87403354 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
87403162 GCTACTCGTT
* * **
87403172 CAAATGCCTTCGGGACATAGCTCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCA
* *
87403212 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTAACTCGCA
*
87403252 CCAATGCCTTCGGG-CTTAGCCCAGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTAACTCGCA
* * * *
87403291 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGAAT-TAGTAAC-TCGCA
87403332 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
87403355 GACATCATTC
Statistics
Matches: 123, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 35 0.28
40 72 0.59
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCA
Found at i:87404605 original size:10 final size:10
Alignment explanation
Indices: 87404590--87404622 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
87404580 CATGAGAGCT
87404590 TTTTTTTTTC
1 TTTTTTTTTC
87404600 TTTTTTTTTC
1 TTTTTTTTTC
*
87404610 TTTCTTTTTC
1 TTTTTTTTTC
87404620 TTT
1 TTT
87404623 CTTCTATTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:87404608 original size:14 final size:14
Alignment explanation
Indices: 87404589--87404625 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
87404579 ACATGAGAGC
87404589 TTTTTTT-TTTCTT
1 TTTTTTTCTTTCTT
87404602 TTTTTTTCTTTCTT
1 TTTTTTTCTTTCTT
*
87404616 TTTCTTTCTT
1 TTTTTTTCTT
87404626 CTATTCGGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTTCTTTCTT
Found at i:87414429 original size:40 final size:40
Alignment explanation
Indices: 87414370--87414538 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
87414360 CGGGACTTTA
* * *
87414370 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
87414410 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
87414450 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
87414490 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
87414530 CCCGGATAT
1 CCCGGATAT
87414539 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:87422462 original size:40 final size:40
Alignment explanation
Indices: 87422403--87422571 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
87422393 CGGGACTTTA
* * *
87422403 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
87422443 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
87422483 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
87422523 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
87422563 CCCGGATAT
1 CCCGGATAT
87422572 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:87426613 original size:40 final size:40
Alignment explanation
Indices: 87426554--87426722 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
87426544 CGGGACTTTA
* * *
87426554 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
87426594 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
87426634 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
87426674 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
87426714 CCCGGATAT
1 CCCGGATAT
87426723 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:87428758 original size:30 final size:29
Alignment explanation
Indices: 87428723--87428796 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
87428713 CTTCGAGCTC
* *
87428723 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
87428753 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
87428782 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
87428797 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:87436616 original size:30 final size:29
Alignment explanation
Indices: 87436581--87436654 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
87436571 CTTCGAGCTC
* *
87436581 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
87436611 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
87436640 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
87436655 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:87444321 original size:24 final size:24
Alignment explanation
Indices: 87444294--87444342 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
87444284 ACTAAACTTA
**
87444294 GCATACAACTGTTTGTCTCTCAAG
1 GCATACAACTACTTGTCTCTCAAG
87444318 GCATACAACTACTTGTCTCTCAAG
1 GCATACAACTACTTGTCTCTCAAG
87444342 G
1 G
87444343 TTTGCAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (24 bp):
GCATACAACTACTTGTCTCTCAAG
Found at i:87449243 original size:20 final size:20
Alignment explanation
Indices: 87449218--87449255 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87449208 GTTTATTCGC
*
87449218 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
87449238 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
87449256 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:87452781 original size:20 final size:20
Alignment explanation
Indices: 87452756--87452824 Score: 57
Period size: 20 Copynumber: 3.2 Consensus size: 20
87452746 GTCACATAAA
87452756 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
** * * *
87452776 TCATGAGTTTAGATGTCACATATA
1 TCATGAACTCAGA--CCACA-A-C
87452800 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
87452820 TCATG
1 TCATG
87452825 TGTTCAGATC
Statistics
Matches: 35, Mismatches: 10, Indels: 8
0.66 0.19 0.15
Matches are distributed among these distances:
20 15 0.43
21 1 0.03
22 8 0.23
23 1 0.03
24 10 0.29
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:87452808 original size:44 final size:44
Alignment explanation
Indices: 87452745--87452833 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
87452735 CCCGAACATG
*
87452745 TGTCACATAAATCATGAACTCAGACCACAACTCATGAGTTTAGA
1 TGTCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
* *
87452789 TGTCACATATATCATGAACTCAGACCACAACTCATGTGTTCAGA
1 TGTCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
87452833 T
1 T
87452834 CACATACTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (44 bp):
TGTCACATAAATCATGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:87460072 original size:13 final size:13
Alignment explanation
Indices: 87460056--87460091 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
87460046 TATTAAAATT
*
87460056 TTTAAAATATATA
1 TTTAAAAAATATA
*
87460069 TTTAAAAAATATG
1 TTTAAAAAATATA
87460082 TTTAAAAAAT
1 TTTAAAAAAT
87460092 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
TTTAAAAAATATA
Found at i:87464579 original size:39 final size:39
Alignment explanation
Indices: 87464525--87464635 Score: 186
Period size: 39 Copynumber: 2.8 Consensus size: 39
87464515 TGTTCGGGTA
87464525 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
87464564 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
1 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
* * *
87464603 ATATCCGGGTTAAGTCCCGAAGGTATTTGTGCG
1 ATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
87464636 GGCTACCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
39 52 0.76
40 16 0.24
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTG
Found at i:87466664 original size:13 final size:13
Alignment explanation
Indices: 87466646--87466672 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
87466636 AACAAAGATA
87466646 GTTTGTTGATCTT
1 GTTTGTTGATCTT
87466659 GTTTGTTGATCTT
1 GTTTGTTGATCTT
87466672 G
1 G
87466673 ATGTGGTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.26, T:0.59
Consensus pattern (13 bp):
GTTTGTTGATCTT
Found at i:87469075 original size:30 final size:31
Alignment explanation
Indices: 87469015--87469075 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
87469005 TTTTACGAGC
87469015 CTAGGGGCAAAATCGTAATTTTTGTAAAAGT
1 CTAGGGGCAAAATCGTAATTTTTGTAAAAGT
* * *
87469046 CTAGGGGCAAAATGGTCA-TTTTGTCAAAGT
1 CTAGGGGCAAAATCGTAATTTTTGTAAAAGT
87469076 ATGAATTATG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (31 bp):
CTAGGGGCAAAATCGTAATTTTTGTAAAAGT
Found at i:87469626 original size:45 final size:44
Alignment explanation
Indices: 87469575--87470017 Score: 609
Period size: 45 Copynumber: 9.8 Consensus size: 44
87469565 TGGGTGACAC
*
87469575 GTGAGCCAGTGTAAGACCATGATGGACATGGCATCAGCGTTGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GCGTTGATT
* * * * *
87469620 GTGAGCCTGTGTAAGACCATGTTGAAAATGGCAACGGTGTTGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GCGTTGATT
* * *
87469665 ATGAGCCAGTGTAAGACCATGTTGGACATGCCATTG-GTATTGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGCG--TTGATT
87469710 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-CGTTGATT
* *
87469755 GTGAGCCAGTGTAAGACAATGTTGGACATGGCATCAGCGTTGACT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GCGTTGATT
*
87469800 GTGAGCTAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-CGTTGATT
*
87469845 GTGAGCCAGTGTAAGACAATGTTGGACATGGCATCAGCGTTGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATC-GCGTTGATT
* *
87469890 GTGAGCTAGTGTAAGACCATGTTGGACATGGCATCGACGTGGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-CGTTGATT
*
87469935 TTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGACGTTGATT
1 GTGAGCCAGTGTAAGACCATGTTGGACATGGCATCG-CGTTGATT
* *
87469980 GTGAGCTACTGTAAGACCATGTCTGGGACATGGCATCG
1 GTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCG
87470018 GCATCAACAT
Statistics
Matches: 355, Mismatches: 33, Indels: 18
0.87 0.08 0.04
Matches are distributed among these distances:
43 1 0.00
44 3 0.01
45 334 0.94
46 3 0.01
47 14 0.04
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.27
Consensus pattern (44 bp):
GTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGCGTTGATT
Found at i:87472808 original size:40 final size:40
Alignment explanation
Indices: 87472734--87472955 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
87472724 AACCCAAGTA
* * *
87472734 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * * *
87472773 CCTTCGGGTCTTAGCCTGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
87472813 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
87472853 CCTTTGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* * *
87472893 CCTTCAGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
87472933 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
87472956 CATTCGAATA
Statistics
Matches: 161, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 12 0.07
40 146 0.91
41 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:87475539 original size:24 final size:22
Alignment explanation
Indices: 87475496--87475541 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
87475486 GTGTCGAAGG
*
87475496 CACACGGGTGTGTCCCTGTGTC
1 CACACGGGTGTGACCCTGTGTC
*
87475518 CACACGGGCGTGTGACCTTGTGTC
1 CACAC-GG-GTGTGACCCTGTGTC
87475542 ATGGAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 2 0.10
24 13 0.65
ACGTcount: A:0.11, C:0.30, G:0.33, T:0.26
Consensus pattern (22 bp):
CACACGGGTGTGACCCTGTGTC
Found at i:87475907 original size:24 final size:24
Alignment explanation
Indices: 87475880--87475930 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
87475870 TACAATTCAC
87475880 TCATAGATGTTTAAAAAGAATTGG
1 TCATAGATGTTTAAAAAGAATTGG
87475904 TCATAGATGTTTAAAAAGAATTGG
1 TCATAGATGTTTAAAAAGAATTGG
87475928 TCA
1 TCA
87475931 ATCATTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (24 bp):
TCATAGATGTTTAAAAAGAATTGG
Found at i:87477383 original size:34 final size:34
Alignment explanation
Indices: 87477340--87477406 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
87477330 GTTTCAGTTA
* *
87477340 GGGCTTTAGCCCAATAT-AGTAACAGTATCAGTAT
1 GGGCCTTAG-CCAATATCAGTAACAGTAACAGTAT
* *
87477374 GGGCCTTAGCCTATTTCAGTAACAGTAACAGTA
1 GGGCCTTAGCCAATATCAGTAACAGTAACAGTA
87477407 CAGATATGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (34 bp):
GGGCCTTAGCCAATATCAGTAACAGTAACAGTAT
Found at i:87481828 original size:19 final size:19
Alignment explanation
Indices: 87481797--87481851 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
87481787 ATGGTATTTT
*
87481797 TGGGCTAAATGGGCCGAAAA
1 TGGGCT-AATGGGCCAAAAA
**
87481817 TGGGCTAATGGGTAAAAAA
1 TGGGCTAATGGGCCAAAAA
87481836 TGGGCTAATGGGCCAA
1 TGGGCTAATGGGCCAA
87481852 CGGGCCCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 24 0.80
20 6 0.20
ACGTcount: A:0.35, C:0.13, G:0.35, T:0.18
Consensus pattern (19 bp):
TGGGCTAATGGGCCAAAAA
Found at i:87482231 original size:26 final size:27
Alignment explanation
Indices: 87482202--87482261 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
87482192 CCACATATAT
*
87482202 ATATCTGT-TCTGGTGGCCTAGCCATA
1 ATATCTGTATCTGGTGACCTAGCCATA
* * *
87482228 ATATCTGTATCTGGTGACTTCGTCATA
1 ATATCTGTATCTGGTGACCTAGCCATA
87482255 ATATCTG
1 ATATCTG
87482262 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCATA
Found at i:87493964 original size:119 final size:119
Alignment explanation
Indices: 87493753--87493967 Score: 376
Period size: 119 Copynumber: 1.8 Consensus size: 119
87493743 TATATATATG
* *
87493753 TAATGGCATGCTCGATTACAATCATACATCTCATAAGGGCATAATCGTCACTTTAGTACATAGGG
1 TAATGGCATGCTCGATTACAAACATACATCTCATAAGGGCATAATAGTCACTTTAGTACATAGGG
* *
87493818 AACAACAGTCATTTGTCAGTTTGGGGGTCTACATATACTTATCGACCCAACATC
66 AACAACAATCATTTGTCACTTTGGGGGTCTACATATACTTATCGACCCAACATC
87493872 TAATGGCATGCTCGATTACAAACATACATCTCATAAGGGCATAATAGTCACTTTAGTACATAGGG
1 TAATGGCATGCTCGATTACAAACATACATCTCATAAGGGCATAATAGTCACTTTAGTACATAGGG
* *
87493937 CACAACAATCATTTGTTACTTTGGGGGTCTA
66 AACAACAATCATTTGTCACTTTGGGGGTCTA
87493968 GGTATTCATA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 90 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (119 bp):
TAATGGCATGCTCGATTACAAACATACATCTCATAAGGGCATAATAGTCACTTTAGTACATAGGG
AACAACAATCATTTGTCACTTTGGGGGTCTACATATACTTATCGACCCAACATC
Found at i:87494952 original size:37 final size:37
Alignment explanation
Indices: 87494844--87494952 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
87494834 AGCTCAGACG
* * *
87494844 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
87494881 AAATCTCTACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
87494918 TAATCTCCACACGTAGTCATCGGGTCTTATCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
87494953 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:87495224 original size:48 final size:49
Alignment explanation
Indices: 87495098--87495234 Score: 206
Period size: 50 Copynumber: 2.8 Consensus size: 49
87495088 GCACATCGCC
*
87495098 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * *
87495148 TATATATTTCACATT-GACCATTCAGCTTTACCACATATACATTTCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
87495196 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
87495235 TGCATGTTCA
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
48 36 0.46
49 2 0.03
50 41 0.52
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:87495283 original size:47 final size:47
Alignment explanation
Indices: 87495204--87495585 Score: 593
Period size: 47 Copynumber: 8.1 Consensus size: 47
87495194 CATACATATT
* * * *
87495204 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * * *
87495251 CCACATTGGTCACTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
87495298 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87495345 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
87495392 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
87495439 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87495486 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
87495533 TCACATTGGCCATTTGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
87495580 TCACAT
1 TCACAT
87495586 AAAATCCTAA
Statistics
Matches: 308, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 308 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:87495324 original size:22 final size:22
Alignment explanation
Indices: 87495297--87495419 Score: 74
Period size: 22 Copynumber: 5.3 Consensus size: 22
87495287 GCTCACATTC
87495297 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
87495319 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
87495343 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
87495366 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
87495390 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
87495413 ATCACAT
1 ATCACAT
87495420 ATATGCATGT
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 26 0.35
23 15 0.20
24 15 0.20
25 19 0.25
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:87498310 original size:18 final size:19
Alignment explanation
Indices: 87498270--87498310 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
87498260 TATAATGCAG
*
87498270 GCCCATGTAGGCCCACACA
1 GCCCATGTAGGCCCACAAA
*
87498289 -CCCATGTA-GCCTACAAA
1 GCCCATGTAGGCCCACAAA
87498306 GCCCA
1 GCCCA
87498311 AAAATGCACT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.29, C:0.41, G:0.17, T:0.12
Consensus pattern (19 bp):
GCCCATGTAGGCCCACAAA
Found at i:87510898 original size:27 final size:27
Alignment explanation
Indices: 87510868--87511154 Score: 335
Period size: 27 Copynumber: 10.6 Consensus size: 27
87510858 TTAGTTTACC
87510868 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
87510895 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
87510922 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
87510949 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
87510976 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
87511003 AAATTACCAAAATACCCCTGTTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
87511030 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
87511057 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
87511084 AAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*** **
87511111 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
87511138 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
87511155 TTGATTTACA
Statistics
Matches: 223, Mismatches: 35, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
26 3 0.01
27 218 0.98
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:87511180 original size:27 final size:27
Alignment explanation
Indices: 87511150--87511505 Score: 408
Period size: 27 Copynumber: 13.2 Consensus size: 27
87511140 ATTACCAAAG
*
87511150 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
87511177 TACCCTCGATATATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
87511204 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
87511231 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
***
87511258 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
87511285 TACTCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
87511312 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
87511339 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
87511366 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
87511393 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
87511420 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
87511447 TACCCTCAATTTATAGAATTACTGA-TT
1 TACCCTCGATTTACAGAATTAC-CATTT
* *
87511474 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
87511501 TACCC
1 TACCC
87511506 CTAGGATGTT
Statistics
Matches: 280, Mismatches: 47, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 279 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:87511181 original size:54 final size:54
Alignment explanation
Indices: 87511150--87511505 Score: 462
Period size: 54 Copynumber: 6.6 Consensus size: 54
87511140 ATTACCAAAG
* *
87511150 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATATATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
*
87511204 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACT-GTTT
*** * *
87511258 TACCCTCGATTTACAGAATTATTGTTTTACTCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
* * * * * * *
87511312 TACCCTTGATTTACAAAATTACTATTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
* * * * *
87511366 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
* * * *
87511420 TATCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
* *
87511474 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACCATTTTACCC
87511506 CTAGGATGTT
Statistics
Matches: 264, Mismatches: 36, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.00
54 263 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTT
Found at i:87511181 original size:81 final size:80
Alignment explanation
Indices: 87511025--87511505 Score: 263
Period size: 81 Copynumber: 6.0 Consensus size: 80
87511015 TACCCCTGTT
** * * * **
87511025 TTGTAAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGATTT-GTGAAAT
1 TTGTAAAATTATTGAAATACCCTCGA-TTTATAAAATTACCAAATTACCCTTGATTTACAG-AAT
* ***
87511088 TACTAAAATACCCTCGA
64 TACCATTTTACCCTCGA
* * *
87511105 CTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACAGAATT
1 -TTGTAAAATTATTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAATT
87511170 ACCATTTTACCCTCGA
65 ACCATTTTACCCTCGA
* * * *** * ** * *
87511186 TATATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATT
1 T-TGTAAAATTATTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAATT
* *
87511251 ATCGTTTTACCCTCGA
65 ACCATTTTACCCTCGA
*** * * *** *
87511267 TT-TACAGAATTATTGTTTTACTCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAAAAT
1 TTGTA-A-AATTATTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAAT
* *
87511331 TACTATTTTACCCTTGA
64 TACCATTTTACCCTCGA
* ** * *** * *
87511348 TT-TACAAAATTACT-ATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAA
1 TTGT--AAAATTATTGA-AATACCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAA
* *
87511411 TTACTATTTTATCCTCGA
63 TTACCATTTTACCCTCGA
** *** * * ** * * * *
87511429 TT-TACAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGATTTACCCTCGATTTATAAAAT
1 TTGTA-A-AATTATTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAAT
87511493 TACCATTTTACCC
64 TACCATTTTACCC
87511506 CTAGGATGTT
Statistics
Matches: 335, Mismatches: 54, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
79 3 0.01
80 3 0.01
81 324 0.97
82 4 0.01
83 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.39
Consensus pattern (80 bp):
TTGTAAAATTATTGAAATACCCTCGATTTATAAAATTACCAAATTACCCTTGATTTACAGAATTA
CCATTTTACCCTCGA
Found at i:87511528 original size:81 final size:78
Alignment explanation
Indices: 87511096--87511528 Score: 373
Period size: 81 Copynumber: 5.3 Consensus size: 78
87511086 ATTACTAAAA
*** * * * * ** *
87511096 TACCCTCGACTTGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTTGATT
1 TACCCTCGA-TT-T-AAATTATTGTTTTACCCTCGATTTATAGAATTACCGATTTACCCTCGATT
*
87511161 TACAGAATTACCATTT
63 TACAAAATTACCATTT
* * *
87511177 TACCCTCGATATATAGAATTACTGTTTTACCCTCGATTTACAAAATTACC-ATTTTACCCTCGAT
1 TACCCTCGAT-T-TA-AATTATTGTTTTACCCTCGATTTATAGAATTACCGA-TTTACCCTCGAT
* * * *
87511241 TTATAGAATTATCGTTT
62 TTACAAAATTACCATTT
* * *
87511258 TACCCTCGATTTACAGAATTATTGTTTTACTCTCGATTTATAGAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTT--A-AATTATTGTTTTACCCTCGATTTATAGAATTACCGATTTACCCTCGATT
*
87511323 TACAAAATTACTATTT
63 TACAAAATTACCATTT
* * * *
87511339 TACCCTTGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTT---AAATTATTGTTTTACCCTCGATTTATAGAATTACCGATTTACCCTCGATT
*
87511404 TACAAAATTACTATTT
63 TACAAAATTACCATTT
* ** * *
87511420 TATCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACTGATTTACCCTCGATT
1 TACCCTCGATTT--A-AATTATTGTTTTACCCTCGATTTATAGAATTACCGATTTACCCTCGATT
*
87511485 TATAAAATTACCATTT
63 TACAAAATTACCATTT
* *
87511501 TACCCCTAGGATGTTAAATGATTGTTTT
1 TA-CCCT-CGAT-TTAAATTATTGTTTT
87511529 GCCTTTGTGG
Statistics
Matches: 293, Mismatches: 48, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.00
80 5 0.02
81 277 0.95
82 5 0.02
83 3 0.01
84 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.40
Consensus pattern (78 bp):
TACCCTCGATTTAAATTATTGTTTTACCCTCGATTTATAGAATTACCGATTTACCCTCGATTTAC
AAAATTACCATTT
Found at i:87512033 original size:60 final size:59
Alignment explanation
Indices: 87511957--87512093 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
87511947 AACTATGTTA
* *
87511957 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
87512017 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
87512077 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
87512094 GTTAACACTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:87514365 original size:27 final size:27
Alignment explanation
Indices: 87514335--87514566 Score: 313
Period size: 27 Copynumber: 8.6 Consensus size: 27
87514325 TTAGTTTACC
*
87514335 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
87514362 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
87514389 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * **
87514416 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
87514443 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
87514470 AAATTACC-AAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
87514496 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
87514523 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
**
87514550 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
87514567 TTGACCTGTA
Statistics
Matches: 178, Mismatches: 26, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 24 0.13
27 154 0.87
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:87514577 original size:107 final size:108
Alignment explanation
Indices: 87514329--87514593 Score: 300
Period size: 107 Copynumber: 2.5 Consensus size: 108
87514319 AATACTTTAG
* * ** * *
87514329 TTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATC
1 TTTACAAAATTACCAAAATACCCCTAGCCTGTAAAATTACTAAAATACCCCTGGTTTATAAAATC
* **
87514394 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGG
66 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAA
** * * *
87514437 TTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC-CAAATACCCCTGGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTAGCCTGTAAAATTACTAAAATACCCCTGGTTTATAAAATC
*
87514501 ATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAA
66 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAA
*** ** * * *
87514544 TTTGTGAAATTACTGAAATA-CCCTTGACCTGTAAAATTATTGAAATACCC
1 TTTACAAAATTACCAAAATACCCCTAG-CCTGTAAAATTACTAAAATACCC
87514594 TCAACTTGTA
Statistics
Matches: 134, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 5 0.04
107 83 0.62
108 46 0.34
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (108 bp):
TTTACAAAATTACCAAAATACCCCTAGCCTGTAAAATTACTAAAATACCCCTGGTTTATAAAATC
ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAA
Found at i:87514635 original size:27 final size:27
Alignment explanation
Indices: 87514335--87514627 Score: 274
Period size: 27 Copynumber: 10.9 Consensus size: 27
87514325 TTAGTTTACC
*
87514335 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * *
87514362 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
*
87514389 AAATCACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * **
87514416 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
87514443 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
87514470 AAATTACC-AAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
87514496 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
87514523 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** * **
87514550 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*** * *
87514577 AAATTATTGAAATA-CCCTCAACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
87514604 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCCTGATTT
87514628 ATAGAATTGC
Statistics
Matches: 216, Mismatches: 39, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
26 27 0.12
27 183 0.85
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:87514646 original size:27 final size:27
Alignment explanation
Indices: 87514616--87514868 Score: 290
Period size: 27 Copynumber: 9.4 Consensus size: 27
87514606 ATTACCAAAG
* *
87514616 TACCCTTGATTTATAGAATTGCCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * **
87514643 TACCCTCGATATATAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
87514670 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
87514697 TACACTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
87514724 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
87514751 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
87514778 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
87514805 TACCCTCAATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
87514832 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
87514859 TACCCTCGAT
1 TACCCTCGAT
87514869 GGACAGAGGC
Statistics
Matches: 189, Mismatches: 37, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:87514660 original size:81 final size:81
Alignment explanation
Indices: 87514575--87514746 Score: 191
Period size: 81 Copynumber: 2.1 Consensus size: 81
87514565 CCTTGACCTG
* ** * *
87514575 TAAAATTATTGAAATACCCTCAACTTGTAAAATTACCAAAGTACCCTTGATTTATAGAATTGCCA
1 TAAAATTACTGAAATACCCTCAACTTACAAAATTACCAAAGTACACTTGATTTATAGAATTACCA
87514640 TTTTACCCTCGATATA
66 TTTTACCCTCGATATA
*** * * * ****
87514656 TAAAATTACTGTTTTACCCTCGATTTACAAAATTATCGTTTTACACTTGATTTATAGAATTACCA
1 TAAAATTACTGAAATACCCTCAACTTACAAAATTACCAAAGTACACTTGATTTATAGAATTACCA
*
87514721 TTTTACCCTCGATTTA
66 TTTTACCCTCGATATA
*
87514737 TAGAATTACT
1 TAAAATTACT
87514747 ATTTTACCCT
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (81 bp):
TAAAATTACTGAAATACCCTCAACTTACAAAATTACCAAAGTACACTTGATTTATAGAATTACCA
TTTTACCCTCGATATA
Found at i:87514860 original size:81 final size:81
Alignment explanation
Indices: 87514616--87514868 Score: 366
Period size: 81 Copynumber: 3.1 Consensus size: 81
87514606 ATTACCAAAG
* * * *
87514616 TACCCTTGATTTATAGAATTGCCATTTTACCCTCGATATATAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
87514681 TACAAAATTATCGTTT
66 TACAAAATTATCGTTT
* * *
87514697 TACACTTGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
*
87514762 TATAAAATTATCGTTT
66 TACAAAATTATCGTTT
* * *
87514778 TACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTA-TCGTTTTACCCTCGAT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACT-GTTTTACCCTCGAT
*
87514842 TTACAAAATTA-CTATTT
65 TTACAAAATTATC-GTTT
87514859 TACCCTCGAT
1 TACCCTCGAT
87514869 GGACAGAGGC
Statistics
Matches: 156, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
80 2 0.01
81 154 0.99
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
TACAAAATTATCGTTT
Found at i:87514875 original size:54 final size:54
Alignment explanation
Indices: 87514616--87514868 Score: 321
Period size: 54 Copynumber: 4.7 Consensus size: 54
87514606 ATTACCAAAG
* * * * *
87514616 TACCCTTGATTTATAGAATTGCCATTTTACCCTCGATATATAAAATTA-CTGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTATC-GTTT
* * * * * * *
87514670 TACCCTCGATTTACAAAATTA-TCGTTTTACACTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACT-ATTTTACCCTCGATTTATAGAATTATCGTTT
*
87514724 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTATCGTTT
* *
87514778 TACCCTCGATTTATAGAATTACTATTTTACCCTCAATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTATCGTTT
* *
87514832 TACCCTCGATTTACAAAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGAT
87514869 GGACAGAGGC
Statistics
Matches: 171, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
54 169 0.99
55 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTATCGTTT
Found at i:87515046 original size:60 final size:59
Alignment explanation
Indices: 87514970--87515106 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
87514960 AACTATGTTA
* *
87514970 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
87515030 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
87515090 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
87515107 GTTAACACTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:87517594 original size:43 final size:43
Alignment explanation
Indices: 87517546--87517712 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 43
87517536 AGAACATATA
* * *
87517546 CAATGCCAACGTCCTAGATGTGGTCTTACATAAAATCAAAAAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAAAAT
*
87517589 CAATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATCAAATA-
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACAAAATCAAAAAT
* * * * * * *
87517631 CGATGCCGATGTCCCAAACATGGTCTTACACGTAAAA-CAGAAGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACAC--AAAATCAAAAAT
* *
87517675 CGATGCCAACGTCCCAGACGTCGTCTTACACAAAATCA
1 CAATGCCAACGTCCCAGACGTGGTCTTACACAAAATCA
87517713 CATAATGAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 30 0.30
43 39 0.39
44 31 0.31
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAAAAT
Found at i:87517656 original size:42 final size:41
Alignment explanation
Indices: 87517566--87517712 Score: 136
Period size: 44 Copynumber: 3.4 Consensus size: 41
87517556 GTCCTAGATG
* * *
87517566 TGGTCTTACATAAAATCAAAAATCAATGCCACTGTCCCAGACA
1 TGGTCTTACACAAAATCAAATA-CGATGCCA-TGTCCCAGACA
* *
87517609 GGGTCTTACACAAAATCAAATACGATGCCGATGTCCCAAACA
1 TGGTCTTACACAAAATCAAATACGATGCC-ATGTCCCAGACA
* *
87517651 TGGTCTTACACGTAAAA-CAGAAGT-CGATGCCAACGTCCCAGACG
1 TGGTCTTACAC--AAAATCA-AA-TACGATGCC-ATGTCCCAGACA
*
87517695 TCGTCTTACACAAAATCA
1 TGGTCTTACACAAAATCA
87517713 CATAATGAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
42 30 0.34
43 24 0.28
44 32 0.37
45 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.21
Consensus pattern (41 bp):
TGGTCTTACACAAAATCAAATACGATGCCATGTCCCAGACA
Found at i:87521424 original size:42 final size:42
Alignment explanation
Indices: 87521338--87521501 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
87521328 TTAGGGTTAT
* * *
87521338 TGATATTACGTGTAAGACCATATCTGGGATATGGAATC-AGTA
1 TGATATTTCATGTAAGACCATATCTGGGATATGGCATCGA-TA
* * * * *
87521380 TGAGACTTCGTGTAAGATCATATCTAGGATATGGCATCGATA
1 TGATATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * * * *
87521422 TGATTTTTTATGTAAGACCATAGCTGGGTTATCAGCATCGATA
1 TGATATTTCATGTAAGACCATATCTGGGATAT-GGCATCGATA
*
87521465 CGATATTTCATGTAAGACCATATCTGGGATATGGCAT
1 TGATATTTCATGTAAGACCATATCTGGGATATGGCAT
87521502 TGGTATGGTA
Statistics
Matches: 98, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
42 61 0.62
43 37 0.38
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
TGATATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:87524424 original size:12 final size:13
Alignment explanation
Indices: 87524405--87524437 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
87524395 GGGTTCGGCT
87524405 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
87524418 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
87524430 ATGGAGAA
1 ATGGAGAA
87524438 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:87530411 original size:13 final size:14
Alignment explanation
Indices: 87530393--87530421 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
87530383 TTTTCATCAT
87530393 AATAATAAAA-TAA
1 AATAATAAAAGTAA
87530406 AATAATAAAAGTAA
1 AATAATAAAAGTAA
87530420 AA
1 AA
87530422 CAAAACCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (14 bp):
AATAATAAAAGTAA
Found at i:87530935 original size:55 final size:56
Alignment explanation
Indices: 87530870--87530984 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 56
87530860 AGCATGGCTG
* * *
87530870 CCAGATACAGA-AAATGTGAC-AGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAAG-GCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* *
87530926 CCAGA-ACAGATATACGTGGCAAGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAAGGCCACCAGAACAGATAATTTGTGGCATAGCCA
87530981 CCAG
1 CCAG
87530985 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 19 0.37
57 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAAGGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:87530981 original size:28 final size:28
Alignment explanation
Indices: 87530895--87530984 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 28
87530885 GTGACAGAGT
*
87530895 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
**
87530924 CACCAGAACAGAT-ATACGTGGCA-AGGC
1 CACCAGAACAGATAATTTGTGGCATA-GC
87530951 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
87530979 CACCAG
1 CACCAG
87530985 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
27 22 0.42
28 22 0.42
29 8 0.15
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:87531137 original size:28 final size:28
Alignment explanation
Indices: 87531090--87531154 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
87531080 AAATTAACCC
*
87531090 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
87531118 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
87531146 TAGGGGTAT
1 TAGGGGTAT
87531155 TCTAGTAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:87531162 original size:28 final size:28
Alignment explanation
Indices: 87531090--87531163 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
87531080 AAATTAACCC
*
87531090 TAGGGGTATAA-AGGTCATTTTGCACACA
1 TAGGGGTATAATA-GTAATTTTGCACACA
* *
87531118 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATAGTAATTTTGCACACA
**
87531146 TAGGGGTATTCTAGTAAT
1 TAGGGGTATAATAGTAAT
87531164 CTAACTATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATAGTAATTTTGCACACA
Found at i:87532233 original size:12 final size:13
Alignment explanation
Indices: 87532214--87532246 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
87532204 GGGTTCGGCT
87532214 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
87532227 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
87532239 ATGGAGAA
1 ATGGAGAA
87532247 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:87534009 original size:34 final size:34
Alignment explanation
Indices: 87533943--87534011 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
87533933 TTTGTATGTT
* * *
87533943 TGCTTGTGTTTACCTCCGGTAATTCCTTGTACCC
1 TGCTTGTGTTTACATCCGATAATTCCTCGTACCC
87533977 TGCTTGTGTTTACATCCGATAATGT-CTCGTACCC
1 TGCTTGTGTTTACATCCGATAAT-TCCTCGTACCC
87534011 T
1 T
87534012 ATTCTGGCGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (34 bp):
TGCTTGTGTTTACATCCGATAATTCCTCGTACCC
Found at i:87547070 original size:40 final size:40
Alignment explanation
Indices: 87547026--87547210 Score: 196
Period size: 39 Copynumber: 4.7 Consensus size: 40
87547016 GTTCAAAACA
* * ***
87547026 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
87547066 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * * * *
87547106 CCTTCGGG-CTTAGCCCGAATATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* ** *
87547145 CCTTCGAG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
87547184 CCTTCGGG-CTTAGCCCGGATATCACAA
1 CCTTCGGGACTTAGCCCGGATATCACAA
87547211 TTCGCACATT
Statistics
Matches: 127, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 87 0.69
40 40 0.31
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:87547139 original size:39 final size:39
Alignment explanation
Indices: 87547056--87547218 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
87547046 TATGGTAACC
* *
87547056 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
87547096 CGCACAATTGCCTTCGGGCTTAGCCCGAATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
87547135 CGCACAATTGCCTTCGAGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
87547174 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
87547213 CGCACA
1 CGCACA
87547219 TTCATTCACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:87550238 original size:27 final size:27
Alignment explanation
Indices: 87550199--87550297 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 27
87550189 ATAAAATGGT
* *
87550199 TATATGAATTGATTATATGGAAATAG-A
1 TATACGAAATGATTATAT-GAAATAGTA
87550226 TATACGAAATGATTATATG-AATCAGCTA
1 TATACGAAATGATTATATGAAAT-AG-TA
*
87550254 TATA-GAAAT-AGTTATATGAAAT-GTT
1 TATACGAAATGA-TTATATGAAATAGTA
*
87550279 TATACGAAATGTTTATATG
1 TATACGAAATGATTATATG
87550298 GATATAGATA
Statistics
Matches: 61, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
25 8 0.13
26 17 0.28
27 28 0.46
28 8 0.13
ACGTcount: A:0.42, C:0.04, G:0.16, T:0.37
Consensus pattern (27 bp):
TATACGAAATGATTATATGAAATAGTA
Found at i:87550242 original size:40 final size:39
Alignment explanation
Indices: 87550192--87550308 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 39
87550182 TGAATACATA
*
87550192 AAATGGTTATATGAATTGATTATATGGAAATAGATATACG
1 AAATGATTATATGAA-TGATTATATGGAAATAGATATACG
* * * * *
87550232 AAATGATTATATGAATCAGCTATATAGAAATAGTTATATG
1 AAATGATTATATGAATGA-TTATATGGAAATAGATATACG
* * * *
87550272 AAATGTTTATACGAAATGTTTATATGGATATAGATAT
1 AAATGATTATATG-AATGATTATATGGAAATAGATAT
87550309 GTAAAAGGGA
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
39 2 0.03
40 56 0.92
41 3 0.05
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (39 bp):
AAATGATTATATGAATGATTATATGGAAATAGATATACG
Found at i:87550274 original size:13 final size:13
Alignment explanation
Indices: 87550164--87550297 Score: 76
Period size: 13 Copynumber: 10.0 Consensus size: 13
87550154 TAAATATACC
*
87550164 AAATGGTTATATG
1 AAATGATTATATG
* * *
87550177 AAAAATGAATACATA
1 --AAATGATTATATG
*
87550192 AAATGGTTATATG
1 AAATGATTATATG
*
87550205 AATTGATTATATGG
1 AAATGATTATAT-G
*
87550219 AAATAGA-TATACG
1 AAAT-GATTATATG
87550232 AAATGATTATATG
1 AAATGATTATATG
* *
87550245 -AATCAGCTATATAG
1 AAATGA-TTATAT-G
87550259 AAAT-AGTTATATG
1 AAATGA-TTATATG
* *
87550272 AAATGTTTATACG
1 AAATGATTATATG
*
87550285 AAATGTTTATATG
1 AAATGATTATATG
87550298 GATATAGATA
Statistics
Matches: 93, Mismatches: 19, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
12 6 0.06
13 57 0.61
14 16 0.17
15 14 0.15
ACGTcount: A:0.45, C:0.04, G:0.16, T:0.35
Consensus pattern (13 bp):
AAATGATTATATG
Found at i:87552383 original size:12 final size:12
Alignment explanation
Indices: 87552349--87552384 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
87552339 TTATTTCTCA
*
87552349 ATCAAGATAATT
1 ATCATGATAATT
87552361 ATCATGA-AATT
1 ATCATGATAATT
87552372 ATCATGATAATT
1 ATCATGATAATT
87552384 A
1 A
87552385 AAGGACTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
ATCATGATAATT
Found at i:87552462 original size:18 final size:17
Alignment explanation
Indices: 87552417--87552462 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
87552407 TTGGTTTGAA
*
87552417 TATTTT-ATTATTATTT
1 TATTTTAATTAATATTT
87552433 TATTTTAA--AATATTT
1 TATTTTAATTAATATTT
87552448 TATTATTAATTAATA
1 TATT-TTAATTAATA
87552463 GTTAAGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 1 0.04
18 4 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTTAATTAATATTT
Found at i:87555464 original size:19 final size:19
Alignment explanation
Indices: 87555440--87555481 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
87555430 CGGGTAAAGG
87555440 ACACGGGCGTGTCCCAAGC
1 ACACGGGCGTGTCCCAAGC
87555459 ACACGGGCGTGTCCCAAGC
1 ACACGGGCGTGTCCCAAGC
87555478 ACAC
1 ACAC
87555482 AGGCATGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.24, C:0.38, G:0.29, T:0.10
Consensus pattern (19 bp):
ACACGGGCGTGTCCCAAGC
Found at i:87563122 original size:35 final size:35
Alignment explanation
Indices: 87563095--87563260 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
87563085 CATGGCAAAG
*
87563095 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
87563130 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
87563165 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
87563205 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
87563240 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
87563261 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:87563214 original size:75 final size:75
Alignment explanation
Indices: 87563095--87563265 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
87563085 CATGGCAAAG
** *
87563095 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
87563154 CCATACTGAGC
65 CCATACCGAGC
87563165 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
87563230 CATACCGAGT
66 CATACCGAGC
**
87563240 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
87563266 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:87570607 original size:35 final size:35
Alignment explanation
Indices: 87570580--87570745 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
87570570 CATGGCAAAG
*
87570580 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
87570615 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
87570650 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
87570690 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
87570725 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
87570746 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:87570699 original size:75 final size:75
Alignment explanation
Indices: 87570580--87570750 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
87570570 CATGGCAAAG
** *
87570580 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
87570639 CCATACTGAGC
65 CCATACCGAGC
87570650 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
87570715 CATACCGAGT
66 CATACCGAGC
**
87570725 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
87570751 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:87574094 original size:22 final size:21
Alignment explanation
Indices: 87574069--87574109 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
87574059 TGCCAAACAC
*
87574069 AACCCTCCTCAAGTACCATTCG
1 AACCCACCTCAA-TACCATTCG
*
87574091 AACCCACTTCAATACCATT
1 AACCCACCTCAATACCATT
87574110 TGCATAACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.32, C:0.39, G:0.05, T:0.24
Consensus pattern (21 bp):
AACCCACCTCAATACCATTCG
Found at i:87578008 original size:24 final size:25
Alignment explanation
Indices: 87577976--87578029 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
87577966 TACGATAGTA
*
87577976 AAAATTATATAAT-TTCATAA-TTTT
1 AAAAGTATAT-ATCTTCATAATTTTT
*
87578000 AAAAGTATATATCTTTATAATTTTT
1 AAAAGTATATATCTTCATAATTTTT
87578025 AAAAG
1 AAAAG
87578030 ATTAAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.08
24 15 0.58
25 9 0.35
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (25 bp):
AAAAGTATATATCTTCATAATTTTT
Found at i:87579759 original size:23 final size:22
Alignment explanation
Indices: 87579716--87579759 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
87579706 TGTTTTTTTT
* *
87579716 TTGTGTTTTTACTATTGTTTCA
1 TTGTGTTTTTAATATTATTTCA
*
87579738 TTGTGGTTTTTAATTTTATTTC
1 TTGT-GTTTTTAATATTATTTC
87579760 GCTATTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.66
Consensus pattern (22 bp):
TTGTGTTTTTAATATTATTTCA
Found at i:87579891 original size:18 final size:19
Alignment explanation
Indices: 87579849--87579891 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
87579839 TCTTAGTATA
87579849 AATATTTTTTATGTATTTT
1 AATATTTTTTATGTATTTT
*
87579868 TA-ATTTTTTAT-TATTTT
1 AATATTTTTTATGTATTTT
87579885 AATATTT
1 AATATTT
87579892 ATTTTAATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 7 0.33
18 13 0.62
19 1 0.05
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
AATATTTTTTATGTATTTT
Found at i:87580473 original size:4 final size:4
Alignment explanation
Indices: 87580464--87580494 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
87580454 GTTAAAACGT
87580464 AATA AATA AATA AATA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AAT
87580495 GTTTTACTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:87580875 original size:30 final size:32
Alignment explanation
Indices: 87580840--87580903 Score: 80
Period size: 31 Copynumber: 2.0 Consensus size: 32
87580830 AATAGATAAA
87580840 ATTTAATA-AAA-ATAACTAATTTAT-TTTTTT
1 ATTTAATATAAAGA-AACTAATTTATCTTTTTT
*
87580870 ATTTAATATAAAGAAATTAATTTATCCTTTTTT
1 ATTTAATATAAAGAAACTAATTTAT-CTTTTTT
87580903 A
1 A
87580904 AAATAAAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 8 0.28
31 13 0.45
32 1 0.03
33 7 0.24
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (32 bp):
ATTTAATATAAAGAAACTAATTTATCTTTTTT
Done.