Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 306 of 427
Found at i:88830811 original size:26 final size:26
Alignment explanation
Indices: 88830782--88830835 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
88830772 GCTCAACCGA
*
88830782 TCATATATCAT-ATAGGGGTATATCGG
1 TCATATA-CATCATAGGGGTATAACGG
* *
88830808 TCATTTACCTCATAGGGGTATAACGG
1 TCATATACATCATAGGGGTATAACGG
88830834 TC
1 TC
88830836 TATCTAACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (26 bp):
TCATATACATCATAGGGGTATAACGG
Found at i:88831729 original size:18 final size:19
Alignment explanation
Indices: 88831708--88831743 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
88831698 AATAAAGAAA
*
88831708 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
88831726 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
88831744 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:88833127 original size:29 final size:29
Alignment explanation
Indices: 88833084--88833215 Score: 219
Period size: 29 Copynumber: 4.5 Consensus size: 29
88833074 AAAATTGTAC
88833084 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
88833113 TGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
* *
88833142 AGGACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
88833172 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
88833201 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
88833216 GATTCACTAT
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
29 69 0.71
30 28 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:88833181 original size:59 final size:58
Alignment explanation
Indices: 88833084--88833215 Score: 219
Period size: 59 Copynumber: 2.3 Consensus size: 58
88833074 AAAATTGTAC
*
88833084 AGCACTAAGTGTGCGAACTGAAAATATATTGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* * *
88833142 AGGACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
88833201 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
88833216 GATTCACTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
58 22 0.32
59 46 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:88839164 original size:18 final size:19
Alignment explanation
Indices: 88839143--88839178 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
88839133 AATAAAGAAA
*
88839143 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
88839161 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
88839179 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:88840607 original size:30 final size:29
Alignment explanation
Indices: 88840521--88840651 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
88840511 AAAATTGTAC
*
88840521 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
88840550 AGCACTAAGTGTGCGA-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
88840578 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
88840608 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
88840637 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
88840652 GATTCACTAT
Statistics
Matches: 100, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
28 28 0.28
29 43 0.43
30 29 0.29
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:88840638 original size:87 final size:88
Alignment explanation
Indices: 88840491--88840651 Score: 261
Period size: 87 Copynumber: 1.8 Consensus size: 88
88840481 GACAAGATTG
* * *
88840491 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
88840556 AAGTGTGCGACTGAAAATATATA
66 AAGTGTGCGACTGAAAATATATA
* * *
88840579 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
88840643 AAGTGTGCG
66 AAGTGTGCG
88840652 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 52 0.78
88 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.25
Consensus pattern (88 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGACTGAAAATATATA
Found at i:88841902 original size:17 final size:17
Alignment explanation
Indices: 88841882--88841926 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
88841872 CCAACCACGT
*
88841882 ATCCTTCCCAACACTTG
1 ATCCTTCACAACACTTG
88841899 ATCCTTCACAACACTTG
1 ATCCTTCACAACACTTG
88841916 ATCCTTCACAA
1 ATCCTTCACAA
88841927 ACAGTTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.29, C:0.38, G:0.04, T:0.29
Consensus pattern (17 bp):
ATCCTTCACAACACTTG
Found at i:88844565 original size:40 final size:40
Alignment explanation
Indices: 88844491--88844633 Score: 160
Period size: 40 Copynumber: 3.6 Consensus size: 40
88844481 CCGCACCAAG
* * * * * * *
88844491 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAC
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
88844531 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
88844571 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
88844611 GCCTTCGGGTCTTAACCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATA
88844634 AAATTTTCAG
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 87 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:88844651 original size:40 final size:41
Alignment explanation
Indices: 88844531--88844673 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 41
88844521 TTGCACAAAC
** * *
88844531 GCCTTCGGGTCTTAGCCCGGATTTAA-CAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATAAAAGCTACTAGCAC-AATT
*
88844571 GCCTTCGGGTCTTAGCCCGGAT-ATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATAAAAGCTACTAGCACAATT
* ** * *
88844611 GCCTTCGGGTCTTAACCCGGATAAAATTTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATAAAAGCTACTAGCACAATT
* *
88844651 GTCTTCGGGGCTTAGCCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATA
88844674 TCATTCAATT
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 80 0.92
41 4 0.05
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (41 bp):
GCCTTCGGGTCTTAGCCCGGATAAAAGCTACTAGCACAATT
Found at i:88863105 original size:48 final size:48
Alignment explanation
Indices: 88863009--88863853 Score: 1359
Period size: 48 Copynumber: 17.4 Consensus size: 48
88862999 TGTAGTGAAT
*
88863009 ATGTGAAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
88863059 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
88863107 ATGTGAAATAAGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* * * *
88863155 CTGTGAAAAATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
88863203 CTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
88863251 ATGTGAAATATGCATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
*
88863301 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCAGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
88863349 ATGTGAAATATGTAAGAGATATGTATATGTGGCAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* * *
88863397 CTGTGAAATATATATGAGATATGTAT-TGTTGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
88863444 ATGTGAAATATGCATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
*
88863494 ATGTGAAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
88863544 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
88863592 CTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
88863640 ATGTGAAATAAGTATGAGATATGTATATCTGTGGTAAAGTCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATA--TGTGGTAAAGCCGAATGGCTA
88863690 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
*
88863738 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
88863786 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
* *
88863834 GTGTGAAATATGTAGGAGAT
1 ATGTGAAATATGTATGAGAT
88863854 GTGTGTATAT
Statistics
Matches: 745, Mismatches: 43, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
47 38 0.05
48 499 0.67
49 3 0.00
50 205 0.28
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (48 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
Found at i:88863863 original size:146 final size:144
Alignment explanation
Indices: 88863009--88863853 Score: 1359
Period size: 146 Copynumber: 5.8 Consensus size: 144
88862999 TGTAGTGAAT
*
88863009 ATGTGAAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 ATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
*
88863074 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATGTATATGTGG
64 GAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
88863139 TAAAGCCGAATGGCTA
129 TAAAGCCGAATGGCTA
* * * * * *
88863155 CTGTGAAAAATATATGAGATATGTATATGTGGCAAAGCCGAATGGCTACTGTGAAATATATATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* *
88863220 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGCATGAGAAATGTATATATGTGG
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG--TATATGTGG
88863285 TAAAGCCGAATGGCTA
129 TAAAGCCGAATGGCTA
* *
88863301 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTAAGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* * * *
88863366 GATATGTATATGTGGCAAAGCCGAATGGCTACTGTGAAATATATATGAGATATGTAT-TGTTGTA
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
88863430 AAGCCGAATGGCTA
131 AAGCCGAATGGCTA
* *
88863444 ATGTGAAATATGCATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 ATGTGAAATATGTATGAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
*
88863509 GAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
64 GAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGT
88863574 GGTAAAGCCGAATGGCTA
127 GGTAAAGCCGAATGGCTA
* * *
88863592 CTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
*
88863657 GATATGTATATCTGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
66 GATATGTATA--TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
88863722 TAAAGCCGAATGGCTA
129 TAAAGCCGAATGGCTA
*
88863738 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGA
1 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
* *
88863803 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
66 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
88863854 GTGTGTATAT
Statistics
Matches: 643, Mismatches: 47, Indels: 20
0.91 0.07 0.03
Matches are distributed among these distances:
143 41 0.06
144 135 0.21
145 45 0.07
146 335 0.52
147 48 0.07
148 39 0.06
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (144 bp):
ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
AAGCCGAATGGCTA
Found at i:88863993 original size:389 final size:386
Alignment explanation
Indices: 88863009--88863892 Score: 1114
Period size: 389 Copynumber: 2.3 Consensus size: 386
88862999 TGTAGTGAAT
* * * *
88863009 ATGTGAAATATGTATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 ATGTGAAATATATATGAGATATG--TAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGCAG
* * * * * * *
88863074 GAGATATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATGTAT--AT
63 GAGAAATGTATATATGTGGCAAAGCCAAATGGCAAAGGTGAAATATGTATGAGAAATGTATAGAT
* * * * * * * *
88863135 GTGGTAAAGCCGAATGGCTACTGTGAAAAATAT-ATGAGATATGTATATGTGGCAAAGCCGAATG
128 GAGGCAAA-CCGAATGACAAATATG--AAATATGATGAGATATGTACATGTGGTAAAGCC-AATG
** *
88863199 GCTACTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGC
189 GAAACTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGC
88863264 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
254 ATGAGAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
*
88863329 GTGGTAAAGCAGAATGGCTAATGTGAAATATGTAAGAGATATGTATATGTGGCAAAGCCGAATGG
319 GTGGTAAAGCAGAATGGCTAATGTGAAATATGTAAGAGATATGTATATGTGGCAAAGCCAAATGG
88863394 CTA
384 CTA
* * *
88863397 CTGTGAAATATATATGAGATATGTATTGTTGTAAAGCCGAATGGCTAATGTGAAATATGCATGAG
1 ATGTGAAATATATATGAGATATGTATTGTGGTAAAGCCGAATGGCTAATGTGAAATATGCAGGAG
* * * * * *
88863462 AAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATATGTG
66 AAATGTATATATGTGGCAAAGCCAAATGGCAAAGGTGAAATATGTATGAGAAATGTATAGATGAG
* * * * * **
88863527 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
131 GCAAA-CCGAATGACAAATATGAAATATG-ATGAGATATGTACATGTGGTAAAGCC-AATGGAAA
*
88863592 CTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGTATGA
193 CTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGCATGA
* * *
88863657 GATATGTATATCTGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
258 GAAATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGG
* * *
88863722 TAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTA
323 TAAAGCAGAATGGCTAATGTGAAATATGTAAGAGATATGTATATGTGGCAAAGCCAAATGGCTA
* * *
88863786 ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGA
1 ATGTGAAATATATATGAGATATGTAT-TGTGGTAAAGCCGAATGGCTAATGTGAAATATGCAGGA
** *
88863851 GATGTGTGTATATTGTGGCCAAATGACCAAATGTG-AAAGGTG
65 GAAATGTATATA-TGTGG-CAAA-G-CCAAATG-GCAAAGGTG
88863893 TGTATTATTA
Statistics
Matches: 452, Mismatches: 32, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
385 41 0.09
386 3 0.01
387 55 0.12
388 20 0.04
389 269 0.60
390 43 0.10
391 5 0.01
392 3 0.01
393 1 0.00
394 11 0.02
395 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (386 bp):
ATGTGAAATATATATGAGATATGTATTGTGGTAAAGCCGAATGGCTAATGTGAAATATGCAGGAG
AAATGTATATATGTGGCAAAGCCAAATGGCAAAGGTGAAATATGTATGAGAAATGTATAGATGAG
GCAAACCGAATGACAAATATGAAATATGATGAGATATGTACATGTGGTAAAGCCAATGGAAACTG
TGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAGCATGAGAA
ATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCAGAATGGCTAATGTGAAATATGTAAGAGATATGTATATGTGGCAAAGCCAAATGGCTA
Found at i:88875290 original size:42 final size:43
Alignment explanation
Indices: 88875198--88875360 Score: 183
Period size: 42 Copynumber: 3.8 Consensus size: 43
88875188 CATCACCAAC
*
88875198 GTCCCAGACATGGTCTTACATGTAA-TCACATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAACTCACATATCGATGCCA-T
* *
88875241 GTCCCAGACAGGGTCTTACACG-AACTCATATA-CGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAACTCACATATCGATGCC-AT
* * *
88875283 GTCCCAGACATGGTCTTACACGTAAATCACAAATCGATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAACTCACATATCGATGCC-AT
* * *
88875327 GTCTCAAACATGGTCTTACACG-AA-TCTCATATCG
1 GTCCCAGACATGGTCTTACACGTAACTCACATATCG
88875361 GAATCCTATG
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
42 39 0.38
43 36 0.35
44 28 0.27
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAACTCACATATCGATGCCAT
Found at i:88875342 original size:86 final size:86
Alignment explanation
Indices: 88875198--88875358 Score: 245
Period size: 86 Copynumber: 1.9 Consensus size: 86
88875188 CATCACCAAC
* * *
88875198 GTCCCAGACATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTAATCACAAATCGATGCCACTGTCCCAAACAGGGTCTTACACG
88875263 AA-CTCATATACGATGCCGAT
66 AATCTCATATACGATGCCGAT
* *
88875283 GTCCCAGACATGGTCTTACACGTAAATCACAAATCGATGCCAAC-GTCTCAAACATGGTCTTACA
1 GTCCCAGACATGGTCTTACACGT-AATCACAAATCGATGCC-ACTGTCCCAAACAGGGTCTTACA
88875347 CGAATCTCATAT
64 CGAATCTCATAT
88875359 CGGAATCCTA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
85 22 0.32
86 37 0.54
87 9 0.13
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (86 bp):
GTCCCAGACATGGTCTTACACGTAATCACAAATCGATGCCACTGTCCCAAACAGGGTCTTACACG
AATCTCATATACGATGCCGAT
Found at i:88900529 original size:231 final size:230
Alignment explanation
Indices: 88900126--88900567 Score: 722
Period size: 231 Copynumber: 1.9 Consensus size: 230
88900116 GCAAATTAAG
*
88900126 AAATGGTTATTAAAGCCATATTAATAAAATAAAAAGCATGAAAATTTACCATATGCTCATGCAAT
1 AAATGGTTATTAAAGCCATATTAATAAAATAAAAAGCATGAAAATTTACCATATGCTCATGCAAC
** * * * *
88900191 TGCTGAAAATATAAAAGGATAATAAAAGAAAATTCAAACTAGAATTCGACTACTATTTTTGGTGA
66 TGCCAAAAATACAAAAGGATAATAAAAGAAAATTCAAAATAGAATTCGACTACTACTTTTAGTGA
* * *
88900256 TTAAGGTATGGTTTTTTATCTGTTTTCGATAATTTCTACGTTTTTGTAATCATTGCTTTGTCTTT
131 TTAAGGTATGGTTTTTGATCAGTTTTCGATAATTTCTACGTTTTT-TAATCATTGCTTTGTATTT
88900321 TACAAAGCCCATGCTTGCAAATGGGAAAATTAGGAA
195 TACAAAGCCCATGCTTGCAAATGGGAAAATTAGGAA
* *
88900357 AAATGGTTATTAAAGTCATATTAATAAAATAAAAAGCATGAAAATTTACCATATGTTCATGCAAC
1 AAATGGTTATTAAAGCCATATTAATAAAATAAAAAGCATGAAAATTTACCATATGCTCATGCAAC
** *
88900422 TGCCAAAAATACAAAAGGATAATAAAAGAAAATTCAAAATAGGGTTTGACTACTACTTTTAGTGA
66 TGCCAAAAATACAAAAGGATAATAAAAGAAAATTCAAAATAGAATTCGACTACTACTTTTAGTGA
* *
88900487 TTAAGGTATGGTTTTTGATCAGTTTTTGATAATTTCTACGTTTTTTAATCGTTGCTTTGTATTTT
131 TTAAGGTATGGTTTTTGATCAGTTTTCGATAATTTCTACGTTTTTTAATCATTGCTTTGTATTTT
88900552 ACAAAGCCCATGCTTG
196 ACAAAGCCCATGCTTG
88900568 AATTTCTGAT
Statistics
Matches: 194, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
230 34 0.18
231 160 0.82
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (230 bp):
AAATGGTTATTAAAGCCATATTAATAAAATAAAAAGCATGAAAATTTACCATATGCTCATGCAAC
TGCCAAAAATACAAAAGGATAATAAAAGAAAATTCAAAATAGAATTCGACTACTACTTTTAGTGA
TTAAGGTATGGTTTTTGATCAGTTTTCGATAATTTCTACGTTTTTTAATCATTGCTTTGTATTTT
ACAAAGCCCATGCTTGCAAATGGGAAAATTAGGAA
Found at i:88902542 original size:34 final size:34
Alignment explanation
Indices: 88902475--88902542 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
88902465 ATTGAAATGA
* * *
88902475 AAGGATATTTGATATTTGATAGTTCTGATCTGTG
1 AAGGATATTTGACATTTGATAGTTCTAAACTGTG
*
88902509 AAGGATATTTGACATTTGATGGTTCTAAACTGTG
1 AAGGATATTTGACATTTGATAGTTCTAAACTGTG
88902543 TTATGAGTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (34 bp):
AAGGATATTTGACATTTGATAGTTCTAAACTGTG
Found at i:88904219 original size:40 final size:40
Alignment explanation
Indices: 88904155--88904345 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
88904145 GCTACTCATT
* * * ***
88904155 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
88904195 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
88904235 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
88904274 CCATTGCCTTCAGG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
88904313 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
88904346 TTCGCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:88904272 original size:39 final size:39
Alignment explanation
Indices: 88904191--88904353 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
88904181 TATGGTAACC
* *
88904191 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
88904231 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
88904270 CGCACCATTGCCTTCAGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
88904309 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
88904348 CGCACA
1 CGCACA
88904354 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:88920629 original size:11 final size:11
Alignment explanation
Indices: 88920613--88920646 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
88920603 CATACACGCC
*
88920613 CGTGTGCCAGG
1 CGTGTGCTAGG
88920624 CGTGTGCTAGG
1 CGTGTGCTAGG
88920635 CGTGTGCTAGG
1 CGTGTGCTAGG
88920646 C
1 C
88920647 CATTCTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.24, G:0.44, T:0.24
Consensus pattern (11 bp):
CGTGTGCTAGG
Found at i:88921790 original size:48 final size:49
Alignment explanation
Indices: 88921718--88921847 Score: 165
Period size: 48 Copynumber: 2.7 Consensus size: 49
88921708 CTCACACACT
* * * *
88921718 AAGTGCTCATATCATGGCCTGAAGCCAACTCAATA-TATCTCGCACCCG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATAGTAACTCGCACCCG
*
88921766 AAGTGCTAATATCATGGCCCGAAGCCAAATCAA-AGTAACTCGCACCTG
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATAGTAACTCGCACCCG
* ** *
88921814 AAGTACCGATATCATGGCCCGAAGCTAAATCAAT
1 AAGTGCTAATATCATGGCCCGAAGCCAAATCAAT
88921848 GAATCCCCTA
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
47 1 0.01
48 70 0.99
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.21
Consensus pattern (49 bp):
AAGTGCTAATATCATGGCCCGAAGCCAAATCAATAGTAACTCGCACCCG
Found at i:88925275 original size:42 final size:44
Alignment explanation
Indices: 88925155--88925276 Score: 153
Period size: 43 Copynumber: 2.8 Consensus size: 44
88925145 TACTGAGATG
*
88925155 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT-TGTATTA
1 TGATTGCATGTAAGACCATGTCTGGGACATTGGCATCTGTATTA
88925198 TGATTGCATGTAAGACCATGTCTGGGACATTGGCATCAT-TATT-
1 TGATTGCATGTAAGACCATGTCTGGGACATTGGCATC-TGTATTA
*** * *
88925241 TGATTTTGTGTAAGACC-TGTCTAGGACAGTGGCATC
1 TGATTGCATGTAAGACCATGTCTGGGACATTGGCATC
88925277 GACATGTGGT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
42 17 0.24
43 49 0.69
44 4 0.06
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (44 bp):
TGATTGCATGTAAGACCATGTCTGGGACATTGGCATCTGTATTA
Found at i:88928978 original size:40 final size:39
Alignment explanation
Indices: 88928813--88928996 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
88928803 AAATTGAATG
* * *
88928813 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
88928853 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
88928893 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
88928933 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
88928972 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
88928997 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:88929021 original size:80 final size:81
Alignment explanation
Indices: 88928853--88929041 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
88928843 GCTGGAAATT
* * * *
88928853 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
88928918 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
88928934 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
88928997 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
88929013 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
88929042 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:88937118 original size:40 final size:40
Alignment explanation
Indices: 88936991--88937120 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
88936981 ATGCTGGAAA
* *
88936991 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
88937031 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
88937071 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
88937111 TTATATCCGG
1 TTATATCCGG
88937121 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:88944800 original size:36 final size:36
Alignment explanation
Indices: 88944753--88944826 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
88944743 AAAGTGTGAT
*
88944753 ATCATCTTTTCTATATTTTATTCAATTCTTATTCAA
1 ATCATCTTTTCTATATTTTATTCAATTCTTAGTCAA
88944789 ATCATCTTTTCTATATTTTATTCAATTCTTAGTCAA
1 ATCATCTTTTCTATATTTTATTCAATTCTTAGTCAA
88944825 AT
1 AT
88944827 AGGCCACCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (36 bp):
ATCATCTTTTCTATATTTTATTCAATTCTTAGTCAA
Found at i:88946549 original size:51 final size:51
Alignment explanation
Indices: 88946473--88946577 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
88946463 TCCTCAATGA
*
88946473 GAATGGGAACAATCGTAAGTGTATAGTATCATCAATAACGCCATTGATCTT
1 GAATGGGAACAACCGTAAGTGTATAGTATCATCAATAACGCCATTGATCTT
*
88946524 GAATGGGAACAACCGTAAGTGTATAGTATCATCAATAACGTCATTGATCTT
1 GAATGGGAACAACCGTAAGTGTATAGTATCATCAATAACGCCATTGATCTT
88946575 GAA
1 GAA
88946578 AGTGTCAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (51 bp):
GAATGGGAACAACCGTAAGTGTATAGTATCATCAATAACGCCATTGATCTT
Found at i:88953244 original size:28 final size:28
Alignment explanation
Indices: 88953212--88953281 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
88953202 AATGAGATTG
88953212 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
88953240 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
88953268 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
88953282 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:88961031 original size:28 final size:28
Alignment explanation
Indices: 88960999--88961068 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
88960989 AATGAGATTG
88960999 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
88961027 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
88961055 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
88961069 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:88963500 original size:2 final size:2
Alignment explanation
Indices: 88963493--88963521 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
88963483 CTTATTCCTC
88963493 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
88963522 AATACATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:88963931 original size:45 final size:45
Alignment explanation
Indices: 88963882--88963968 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
88963872 CCAAAACATG
* * * *
88963882 TGTCACATAAATCATGAATTCAGACCACAACTCAATGAGTTCGGA
1 TGTCACATAAATCATGAACTCAAAACACAACTCAATAAGTTCGGA
*
88963927 TGTCACATATATCATGAACTCAAAACACAACTCAATAAGTTC
1 TGTCACATAAATCATGAACTCAAAACACAACTCAATAAGTTC
88963969 AGATTAGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.25
Consensus pattern (45 bp):
TGTCACATAAATCATGAACTCAAAACACAACTCAATAAGTTCGGA
Found at i:88965485 original size:32 final size:32
Alignment explanation
Indices: 88965446--88965544 Score: 126
Period size: 32 Copynumber: 3.1 Consensus size: 32
88965436 TACTCAATTG
* *
88965446 AATTTTCGTACATACATGTACTATATTGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
*
88965478 AATTTTCGTACATACCTGTACCGTATTGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
* * * * *
88965510 AATTTCCGTAGATACCTGTATCATCTCGTACC
1 AATTTTCGTACATACCTGTACCATATTGTACC
88965542 AAT
1 AAT
88965545 CTCATACTGA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.37
Consensus pattern (32 bp):
AATTTTCGTACATACCTGTACCATATTGTACC
Found at i:88965653 original size:28 final size:28
Alignment explanation
Indices: 88965622--88965721 Score: 128
Period size: 28 Copynumber: 3.6 Consensus size: 28
88965612 CCGATACCTT
*
88965622 GCACACTAAGTGCCGTTCTGGATGTTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
* * * **
88965650 GCACACTAAGTGCCATCCTCGTTACTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
*
88965678 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTGGATGTTTC
*
88965706 GCACACTAAGTACCAT
1 GCACACTAAGTGCCAT
88965722 CCCGATACTT
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTGGATGTTTC
Found at i:88965653 original size:56 final size:56
Alignment explanation
Indices: 88965587--88965747 Score: 195
Period size: 56 Copynumber: 2.9 Consensus size: 56
88965577 TGAATACTCA
* *
88965587 ATGTATCGCACACT-AGATGTCATACC-CGATACCTT-GCACACTAAGTGCCGTTCTGG
1 ATGTATCGCACACTAAG-TGCCAT-CCTCGATA-CTTCGCACACTAAGTGCCATTCTGG
* *
88965643 ATGTTTCGCACACTAAGTGCCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
* * **
88965699 ATGTATCGCACACTAAGTACCATCC-CGATACTTCGTACGTTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCA
88965748 CATATAATTA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
55 25 0.27
56 65 0.71
57 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:88971751 original size:32 final size:31
Alignment explanation
Indices: 88971675--88971770 Score: 120
Period size: 32 Copynumber: 3.0 Consensus size: 31
88971665 TCAATTGAAT
* *
88971675 TTTTGTACATACATGTACTATATTGTACCAA
1 TTTTGTACATACCTGTACCATATTGTACCAA
88971706 TTTTCGTACATACCTGTACCATATTGTACCAA
1 TTTT-GTACATACCTGTACCATATTGTACCAA
* * * *
88971738 TTTCTGTAGATACCTGTATCATCTCGTACCAA
1 TTT-TGTACATACCTGTACCATATTGTACCAA
88971770 T
1 T
88971771 CTCATACTCA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
31 4 0.07
32 52 0.91
33 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (31 bp):
TTTTGTACATACCTGTACCATATTGTACCAA
Found at i:88971879 original size:28 final size:28
Alignment explanation
Indices: 88971848--88971947 Score: 128
Period size: 28 Copynumber: 3.6 Consensus size: 28
88971838 CCGATACCTT
**
88971848 GCACACTAAGTGCTGTTCTGGATGTTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
* * * **
88971876 GCACACTAAGTGCCATCCTCGTTACTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
*
88971904 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTGGATGTTTC
88971932 GCACACTAAGTGCCAT
1 GCACACTAAGTGCCAT
88971948 CCCCAATACT
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTGGATGTTTC
Found at i:88971879 original size:56 final size:56
Alignment explanation
Indices: 88971813--88971974 Score: 186
Period size: 56 Copynumber: 2.9 Consensus size: 56
88971803 TAAATACTCA
* **
88971813 ATGTATCGCACACT-AGATGTCATACC-CGATACCTT-GCACACTAAGTGCTGTTCTGG
1 ATGTATCGCACACTAAG-TGCCAT-CCTCGATA-CTTCGCACACTAAGTGCCATTCTGG
* *
88971869 ATGTTTCGCACACTAAGTGCCATCCTCGTTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
* * * **
88971925 ATGTATCGCACACTAAGTGCCATCCCCAATACTTCTCACGTTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCA
88971975 CATATAATTA
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
55 5 0.05
56 84 0.92
57 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (56 bp):
ATGTATCGCACACTAAGTGCCATCCTCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:88976077 original size:27 final size:27
Alignment explanation
Indices: 88976042--88976132 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 27
88976032 AAGGTCAAAA
* *
88976042 CAATCATTTTACCTTACAGGGGTATTT
1 CAATAATTTTACCTTACAAGGGTATTT
88976069 CAATAATTTTA-C--ACAAGGGTATTT
1 CAATAATTTTACCTTACAAGGGTATTT
***
88976093 TGGTAATTTTACACTT-CAAGGGTATTT
1 CAATAATTTTAC-CTTACAAGGGTATTT
**
88976120 CGGTAATTTTACC
1 CAATAATTTTACC
88976133 CCATTAGGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
24 19 0.35
26 3 0.06
27 32 0.59
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (27 bp):
CAATAATTTTACCTTACAAGGGTATTT
Found at i:88976141 original size:27 final size:27
Alignment explanation
Indices: 88976061--88976212 Score: 118
Period size: 27 Copynumber: 5.8 Consensus size: 27
88976051 TACCTTACAG
**
88976061 GGGTATTTCAATAATTTTACAC---AA
1 GGGTATTTCGGTAATTTTACACATTAA
*
88976085 GGGTATTTTGGTAATTTTACAC-TTCAA
1 GGGTATTTCGGTAATTTTACACATT-AA
*
88976112 GGGTATTTCGGTAATTTTACCCCATT-A
1 GGGTATTTCGGTAATTTTA-CACATTAA
* * * * *
88976139 GGGTATTTCGATAACTATACAAATTGA
1 GGGTATTTCGGTAATTTTACACATTAA
* * *
88976166 GGGTATTTCGATAATTTTACATACT-A
1 GGGTATTTCGGTAATTTTACACATTAA
* *
88976192 GGATATTTTGGTAATTTTACA
1 GGGTATTTCGGTAATTTTACA
88976213 AATTGAGGTC
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
24 19 0.18
26 23 0.22
27 59 0.56
28 2 0.02
29 2 0.02
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACACATTAA
Found at i:88978684 original size:27 final size:27
Alignment explanation
Indices: 88978654--88978936 Score: 156
Period size: 27 Copynumber: 10.4 Consensus size: 27
88978644 ATTACCAAAG
* * *
88978654 TACCCTCGATTGACAGAATTACCGTTC
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
88978681 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
88978708 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*****
88978735 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCGTTT
* ** *****
88978762 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTACAAAATTACCGTTT
* ** * ***
88978789 TACCCCCTGATTTGTAAAATTACTGGAA
1 TACCCTC-GATTTACAAAATTACCGTTT
****
88978817 TACCCTCGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TACAAAATTACCGTTT
* * **
88978845 TACCCTCGATTTATAGAATTAATGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* ***
88978872 TACCCTCGATTTACAGAATTAATATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
88978899 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
88978926 TACCCTCGATT
1 TACCCTCGATT
88978937 GTGAAATTAC
Statistics
Matches: 212, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.01
27 163 0.77
28 45 0.21
29 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:88978766 original size:54 final size:54
Alignment explanation
Indices: 88978636--88978783 Score: 154
Period size: 54 Copynumber: 2.7 Consensus size: 54
88978626 AATACTTTAG
* * * * *
88978636 TTTACCAAATTACCAAAGTACCCTCGATTGACAGAATTACCGTTCTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCGTTCTACCCTCGA
* * *** *
88978690 TTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCGTTCTACCCTCGA
* * *
88978744 TTTACAAAATTACTAAAATACCC-CTGGTTTGTAAAATTAC
1 TTTACAAAATTACCAAAATACCCTC-GATTTATAAAATTAC
88978784 TAAAATACCC
Statistics
Matches: 75, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
53 1 0.01
54 74 0.99
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCGTTCTACCCTCGA
Found at i:88978804 original size:28 final size:28
Alignment explanation
Indices: 88978749--88978849 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
88978739 CTCGATTTAC
*
88978749 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
88978776 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
** * *
88978804 AAAATTACTGGAATACCCTC-GACTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
* *
88978831 AAAAATTACCAAAGTACCC
1 -AAAATTACTAAAATACCC
88978850 TCGATTTATA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 21 0.33
28 42 0.67
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:88978856 original size:55 final size:54
Alignment explanation
Indices: 88978735--88978865 Score: 138
Period size: 55 Copynumber: 2.4 Consensus size: 54
88978725 ATTACCGTTT
* ** *
88978735 TACCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAAAA
* * ** *
88978789 TACCCCCTGATTTGTAAAATTACTGGAATA-CCCTCGACTTGTAAAAATTACCAAAG
1 TACCCTC-GATTTATAAAATTACTAAAATACCCCT-GACTTGT-AAAATTACCAAAA
*
88978845 TACCCTCGATTTATAGAATTA
1 TACCCTCGATTTATAAAATTA
88978866 ATGTTTTACC
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
54 10 0.16
55 35 0.56
56 17 0.27
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCCTGACTTGTAAAATTACCAAAA
Found at i:88979070 original size:27 final size:27
Alignment explanation
Indices: 88978968--88979082 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
88978958 TATAGGGTAG
* * * *
88978968 AATTACCAAAACAACCCTAGTTTGTAG
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
88978995 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
88979022 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
88979049 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
88979076 AATTACC
1 AATTACC
88979083 CTTGATTTGT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.04
27 65 0.90
28 4 0.06
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:88979940 original size:20 final size:21
Alignment explanation
Indices: 88979905--88979961 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
88979895 TGATACGTGG
88979905 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
88979923 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
* *
88979944 G-TATGAAATGCATATGAT
1 GATATGATATGCACATGAT
88979962 GTATTCATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.65
21 2 0.06
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:88980090 original size:52 final size:51
Alignment explanation
Indices: 88980011--88980146 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
88980001 GAGGAAGTGC
88980011 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
* *
88980063 AAAAAGGCTTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
88980114 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
88980147 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 7 0.09
51 24 0.30
52 34 0.43
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:88980102 original size:25 final size:26
Alignment explanation
Indices: 88980011--88980146 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
88980001 GAGGAAGTGC
88980011 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
88980037 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
88980063 AAAAAGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
88980089 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
88980114 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
88980137 AAAAGAGGCT
1 AAAAG-GGCT
88980147 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 30 0.31
26 55 0.57
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:88980434 original size:31 final size:31
Alignment explanation
Indices: 88980399--88980477 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
88980389 TGTTTACAGT
*
88980399 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTAGGA
*
88980430 AAAGGCTTCGGCCCAGTTATATGATTTAGGA
1 AAAGGCTTCGGCCCAGTGATATGATTTAGGA
88980461 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
88980478 AACCGTTAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTAGGA
Found at i:88982757 original size:27 final size:27
Alignment explanation
Indices: 88982725--88982949 Score: 166
Period size: 27 Copynumber: 8.3 Consensus size: 27
88982715 TTAGTTTACC
*
88982725 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
88982752 GAATTACCGTTCTACCATCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***
88982779 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
*** * *
88982806 AAATTACCATTTTATCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
88982833 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* * *
88982860 AAATTACTAAAATACCCCCTGATTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
**
88982888 AAATTACTGAAATACCCTCGACTTGTA-A
1 AAATTACCAAAATACCCTCGA-TT-TATA
*
88982916 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
*
88982943 GAATTAC
1 AAATTAC
88982950 TGTTTTACCC
Statistics
Matches: 165, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.02
27 114 0.69
28 47 0.28
29 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:88982849 original size:54 final size:54
Alignment explanation
Indices: 88982719--88983002 Score: 176
Period size: 54 Copynumber: 5.2 Consensus size: 54
88982709 AATACTTTAG
* * * * * * *
88982719 TTTACCAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTCTACCATCGA
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGA
* * * *** *
88982773 TTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTATCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGA
* * * *** *
88982827 TTTACAAAATTACTAAAATACCC-CTGGTTTGTAAAATTACTAAAATACCCCCTGA
1 TTTACAAAATTACTAAAATACCCTC-GATTTATAAAATTACCATTTTACCCTC-GA
** * ***
88982882 TTTGTAAAATTACTGAAATACCCTCGACTTGTA-AAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTCGA-TT-TATAAAATTACCATTTTACCCTCGA
* * **** * * ** *
88982937 TTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTAATATTTTACCCTTGA
1 TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGA
88982991 TTTACAAAATTA
1 TTTACAAAATTA
88983003 TCGTTTTACC
Statistics
Matches: 177, Mismatches: 47, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
53 3 0.02
54 106 0.60
55 47 0.27
56 20 0.11
57 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (54 bp):
TTTACAAAATTACTAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGA
Found at i:88982887 original size:28 final size:27
Alignment explanation
Indices: 88982832--88982950 Score: 130
Period size: 28 Copynumber: 4.3 Consensus size: 27
88982822 CTCGATTTAC
* *
88982832 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCGATTTGT
88982859 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCC-GATTTGT
* * *
88982887 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCCCGATTTGT
* * * *
88982914 AAAAATTACCAAAGTACCCTCGATTTAT
1 -AAAATTACTAAAATACCCCCGATTTGT
*
88982942 AGAATTACT
1 AAAATTACT
88982951 GTTTTACCCT
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
27 32 0.41
28 46 0.59
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCCGATTTGT
Found at i:88982958 original size:27 final size:26
Alignment explanation
Indices: 88982928--88983019 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 26
88982918 ATTACCAAAG
*
88982928 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTA-TGTTT
*
88982955 TACCCTCGATTTACAGAATTAATATTT
1 TACCCTCGATTTACAGAATT-ATGTTT
* *
88982982 TACCCTTGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTAT-GTTT
88983009 TACCCTCGATT
1 TACCCTCGATT
88983020 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.04
27 54 0.95
28 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTATGTTT
Found at i:88982963 original size:55 final size:54
Alignment explanation
Indices: 88982764--88982950 Score: 153
Period size: 55 Copynumber: 3.4 Consensus size: 54
88982754 ATTACCGTTC
* * * *** ***
88982764 TACCATCGATTTATAGAATTACCATTTTACCCTCGATT-TATAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTGTA-AAAATTACCAAAA
* * * * *
88982818 TATCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTGT-AAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAATA-CCCTCGATTGTAAAAATTACCAAAA
* * * *
88982872 TACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAAG
1 TACCCTC-GATTTATAAAATTACTAAAATACCCTCGA-TTGTAAAAATTACCAAAA
*
88982928 TACCCTCGATTTATAGAATTACT
1 TACCCTCGATTTATAAAATTACT
88982951 GTTTTACCCT
Statistics
Matches: 102, Mismatches: 26, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
54 40 0.39
55 44 0.43
56 18 0.18
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTGTAAAAATTACCAAAA
Found at i:88983081 original size:27 final size:26
Alignment explanation
Indices: 88983051--88983165 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 26
88983041 TATAGGGTAG
* *
88983051 AATTACCAAAACAGCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAATTTGTAA
** *
88983078 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACC-CTAATTTGTAA
* *
88983105 AATTACCGAAATACCTTCAATTTGTAA
1 AATTACCAAAATACCCT-AATTTGTAA
* **
88983132 AATTACAAAAATACCCCTAATTTACAA
1 AATTACCAAAATA-CCCTAATTTGTAA
88983159 AATTACC
1 AATTACC
88983166 CTTGATTTGT
Statistics
Matches: 71, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.04
27 65 0.92
28 3 0.04
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAATTTGTAA
Found at i:88984023 original size:20 final size:20
Alignment explanation
Indices: 88983998--88984064 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
88983988 GATATGATAT
*
88983998 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
88984018 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
88984038 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
88984058 ACATGAT
1 ACATGAT
88984065 GTATTCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:88984143 original size:25 final size:26
Alignment explanation
Indices: 88984114--88984248 Score: 199
Period size: 25 Copynumber: 5.3 Consensus size: 26
88984104 GAGGAAGTGC
88984114 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
88984140 -AAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
88984165 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
88984191 AAAAGGGCTT-TGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
88984216 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
88984239 AAAAGAGGCT
1 AAAAG-GGCT
88984249 AGGCCTCTAG
Statistics
Matches: 101, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 55 0.54
26 33 0.33
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:88984190 original size:51 final size:50
Alignment explanation
Indices: 88984114--88984248 Score: 211
Period size: 51 Copynumber: 2.7 Consensus size: 50
88984104 GAGGAAGTGC
88984114 AAAAGGGCTTATGCCCCAGTTTATTGAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAGGGCTT-TGCCCCAGTTTACCG
*
88984165 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG-AAAGGGCTTTGCCCCAGTTTACCG
*
88984216 AAAAGGGCTT-TGCCCCAG-TTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAG-GGCT
88984249 AGGCCTCTAG
Statistics
Matches: 80, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
48 4 0.05
49 9 0.11
50 8 0.10
51 50 0.62
52 9 0.11
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAGGGCTTTGCCCCAGTTTACCG
Found at i:88984523 original size:31 final size:31
Alignment explanation
Indices: 88984488--88984566 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
88984478 CATTTAAAAT
88984488 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
88984519 AAAGGCTTCGGCCCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
88984550 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
88984567 AACCGTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:88988704 original size:49 final size:49
Alignment explanation
Indices: 88988534--88988708 Score: 219
Period size: 49 Copynumber: 3.5 Consensus size: 49
88988524 TGAGGTCACG
*
88988534 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCA
* * * * * *
88988583 TGTGCAGTACTAAGTGCAGGCTACT--ATGCATACCTGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGATAA-T-TGGTCGCA
*
88988634 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCA
*
88988683 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
88988709 TGCGTACTAG
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
47 2 0.02
49 62 0.59
50 2 0.02
51 36 0.34
53 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCA
Found at i:88988704 original size:100 final size:100
Alignment explanation
Indices: 88988529--88988711 Score: 330
Period size: 100 Copynumber: 1.8 Consensus size: 100
88988519 TATTGTGAGG
*
88988529 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGCAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGTACT
88988594 AAGTGCAGGCTACTATGCATACCTGAAAACTATGA
66 AAGTGCAGGCTACTATGCATACCTGAAAACTATGA
* *
88988629 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGTACT
*
88988694 AAGTGTAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
88988712 GTACTAGGTA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGCAGTACT
AAGTGCAGGCTACTATGCATACCTGAAAACTATGA
Found at i:88992750 original size:2 final size:2
Alignment explanation
Indices: 88992743--88992769 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
88992733 GAGTGATGTT
88992743 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
88992770 TTGATATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:88995387 original size:20 final size:20
Alignment explanation
Indices: 88995364--88995402 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
88995354 TAAACATGGT
88995364 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
88995384 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
88995403 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:88995479 original size:24 final size:24
Alignment explanation
Indices: 88995452--88995547 Score: 115
Period size: 24 Copynumber: 4.0 Consensus size: 24
88995442 GGAGGAAGTG
88995452 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
88995476 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
88995500 -TAAAGGTCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
88995523 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
88995548 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
23 20 0.32
24 32 0.52
25 10 0.16
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:88995514 original size:23 final size:23
Alignment explanation
Indices: 88995454--88995526 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
88995444 AGGAAGTGCA
*
88995454 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
88995478 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
88995501 AAAGGTCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
88995524 AAA
1 AAA
88995527 AGAGGCTAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 24 0.52
24 22 0.48
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:88995528 original size:47 final size:48
Alignment explanation
Indices: 88995454--88995547 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 48
88995444 AGGAAGTGCA
*
88995454 AAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTCCAGTTATT
* * *
88995501 AAAGGTCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCAGTTAT
88995548 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
47 30 0.73
48 11 0.27
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCAGTTATT
Found at i:89003389 original size:20 final size:20
Alignment explanation
Indices: 89003360--89003406 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
89003350 ATTTTGATAA
*
89003360 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
89003380 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89003400 ACATGAT
1 ACATGAT
89003407 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:89003481 original size:24 final size:24
Alignment explanation
Indices: 89003454--89003596 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
89003444 TGGAGGAAGT
89003454 GCAAAAGGGCTTATGCCCCAGTTA
1 GCAAAAGGGCTTATGCCCCAGTTA
89003478 GCAAAAGGGCTTATGCCCCAGTTA
1 GCAAAAGGGCTTATGCCCCAGTTA
* *
89003502 TCAAAAGGGCTTATGCCTCAGTTA
1 GCAAAAGGGCTTATGCCCCAGTTA
*
89003526 TG-AAAAGGGCTTATGCCTCAGTTA
1 -GCAAAAGGGCTTATGCCCCAGTTA
*
89003550 TCAAAAGGGCTTATGCCCCAGTTA
1 GCAAAAGGGCTTATGCCCCAGTTA
** *
89003574 -TTAAAGGGCTTTTGCCCCAGTTA
1 GCAAAAGGGCTTATGCCCCAGTTA
89003597 TTAAAAGAGG
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.18
24 89 0.82
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
GCAAAAGGGCTTATGCCCCAGTTA
Found at i:89003532 original size:48 final size:48
Alignment explanation
Indices: 89003455--89003608 Score: 231
Period size: 48 Copynumber: 3.2 Consensus size: 48
89003445 GGAGGAAGTG
89003455 CAAAAGGGCTTATGCCCCAGTTA-GCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATG-AAAAGGGCTTATGCCCCAGTTAT
* *
89003503 CAAAAGGGCTTATGCCTCAGTTATGAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTATGCCCCAGTTAT
* *
89003551 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTATGCCCCAGTTAT
*
89003598 TAAAAGAGGCT
1 CAAAAG-GGCT
89003609 AGGCCTCTAG
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 25 0.26
48 71 0.73
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (48 bp):
CAAAAGGGCTTATGCCCCAGTTATGAAAAGGGCTTATGCCCCAGTTAT
Found at i:89003573 original size:72 final size:71
Alignment explanation
Indices: 89003456--89003622 Score: 237
Period size: 72 Copynumber: 2.3 Consensus size: 71
89003446 GAGGAAGTGC
* * *
89003456 AAAAGGGCTTATGCCCCAGTTAGCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCTC
1 AAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCC
89003521 AGTTATG
65 AGTTATG
* *
89003528 AAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA
*
89003593 GTTATT
66 GTTATG
*
89003599 AAAAGAGGC-TAGGCCTCTAGTTAT
1 AAAAG-GGCTTATGCCTC-AGTTAT
89003623 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 32 0.37
72 54 0.63
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTATGCCTCAGTTATCAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA
GTTATG
Found at i:89005100 original size:56 final size:56
Alignment explanation
Indices: 89005032--89005221 Score: 265
Period size: 56 Copynumber: 3.4 Consensus size: 56
89005022 TCCCAGACAG
* * *
89005032 GGTCTAACTCGCACAAATATATCAGAGTCACATATCAATGTCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCAATGCCAACGTATAAAACGT
* *
89005088 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCAATGCCAACGTATAAAACGT
* * *
89005144 GGTCTTACTCGCACACATATATGA-AGTCACATAACAATGCCAACGTATAAAACGC
1 GGTCTTACTCGCACACATATATCAGAGTCACATATCAATGCCAACGTATAAAACGT
* * * *
89005199 AGTCTAATTCACACACATATATC
1 GGTCTTACTCGCACACATATATC
89005222 GATGCCATGG
Statistics
Matches: 119, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 46 0.39
56 73 0.61
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAGTCACATATCAATGCCAACGTATAAAACGT
Found at i:89007324 original size:30 final size:30
Alignment explanation
Indices: 89007290--89007350 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
89007280 TTCCCGAGCC
89007290 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
89007320 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
89007350 T
1 T
89007351 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:89007493 original size:14 final size:14
Alignment explanation
Indices: 89007471--89007517 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
89007461 AATATCTATC
*
89007471 TTTTCTTATATATT
1 TTTTATTATATATT
89007485 TTTTATTATATATT
1 TTTTATTATATATT
*
89007499 ATTTATT-T-TGATT
1 TTTTATTATAT-ATT
89007512 TTTTAT
1 TTTTAT
89007518 ACTAATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 1 0.03
13 9 0.31
14 19 0.66
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTTATTATATATT
Found at i:89007581 original size:21 final size:20
Alignment explanation
Indices: 89007554--89007605 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
89007544 TGCAAAATAC
*
89007554 TTATTATATTCTTCTTAT-TT
1 TTATTATATT-TCCTTATATT
89007574 TATATTATATTTCCTTATATT
1 T-TATTATATTTCCTTATATT
89007595 TTATTCATATT
1 TTATT-ATATT
89007606 ATATTATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 11 0.39
21 17 0.61
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATTATATTTCCTTATATT
Found at i:89011750 original size:2 final size:2
Alignment explanation
Indices: 89011743--89011775 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
89011733 GTTAATGCTG
89011743 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
89011776 CAACGATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:89012940 original size:48 final size:48
Alignment explanation
Indices: 89012868--89013370 Score: 478
Period size: 48 Copynumber: 10.0 Consensus size: 48
89012858 CAAGATAAAT
89012868 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
89012916 ATATGTATATGTGGTAAAGACGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
89012964 ATAGGTATATGTGGTAAAGCCGAATGTCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *** *
89013012 ATATGTATATGTGGTAAAGCCGAATGGCTTATGTGGTAAAGCCGAATG-G
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGT-G-AAATATGTATGAG
* * * * * * *
89013061 CTAATGTGAAATAT-GT-ATG-AGATAT-G-TATATGTGGTAAAGCCGAATGGCTAACGTGAA
1 AT-ATGT-ATATGTGGTAAAGCCGA-ATGGCTA-ATGT-G-AAA----TAT-G-T-A--TGAG
*
89013119 ATATGTATGAGATAGGTATATGTGGTAAAGCCGAGTGGCTAATGTGAAATATGTATGAG
1 ATATGTAT---AT--GT------GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
89013178 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
89013226 ATATGTATATGTGATAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
89013274 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
89013322 ATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
89013370 A
1 A
89013371 CGTGTGTATA
Statistics
Matches: 380, Mismatches: 43, Indels: 64
0.78 0.09 0.13
Matches are distributed among these distances:
47 1 0.00
48 304 0.80
49 7 0.02
50 13 0.03
51 4 0.01
53 1 0.00
54 2 0.01
55 1 0.00
56 3 0.01
57 6 0.02
58 1 0.00
59 13 0.03
61 2 0.01
62 1 0.00
63 1 0.00
64 2 0.01
68 5 0.01
69 4 0.01
70 7 0.02
71 2 0.01
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:89013047 original size:22 final size:22
Alignment explanation
Indices: 89013019--89013068 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
89013009 GAGATATGTA
89013019 TATGTGGTAAAGCCGAATGGCT
1 TATGTGGTAAAGCCGAATGGCT
89013041 TATGTGGTAAAGCCGAATGGCT
1 TATGTGGTAAAGCCGAATGGCT
*
89013063 AATGTG
1 TATGTG
89013069 AAATATGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28
Consensus pattern (22 bp):
TATGTGGTAAAGCCGAATGGCT
Found at i:89013073 original size:166 final size:166
Alignment explanation
Indices: 89012875--89013206 Score: 628
Period size: 166 Copynumber: 2.0 Consensus size: 166
89012865 AATATATGTA
89012875 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGACGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGACGAA
*
89012940 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGTCTAACGTGAAATAT
66 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATAT
89013005 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
131 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
*
89013041 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGACGAA
* *
89013106 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAGTGGCTAATGTGAAATAT
66 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATAT
89013171 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
131 GTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
89013207 AACGTGAAAT
Statistics
Matches: 162, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 162 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (166 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGACGAA
TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATAT
GTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:89013084 original size:70 final size:70
Alignment explanation
Indices: 89012971--89013110 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
89012961 GAGATAGGTA
*
89012971 TATGTGGTAAAGCCGAATGTCTAACGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
89013036 TGGCT
66 TGGCT
*
89013041 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
89013106 TGGCT
66 TGGCT
89013111 AACGTGAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (70 bp):
TATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
TGGCT
Found at i:89013131 original size:118 final size:118
Alignment explanation
Indices: 89012923--89013164 Score: 421
Period size: 118 Copynumber: 2.1 Consensus size: 118
89012913 GAGATATGTA
89012923 TATGTGGTAAAGACGAATGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGACGAATGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAA
* *
89012988 TGTCTAACGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
66 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCT
* * *
89013041 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGACGAATGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAA
*
89013106 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAGTGGCT
66 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCT
*
89013159 AATGTG
1 TATGTG
89013165 AAATATGTAT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (118 bp):
TATGTGGTAAAGACGAATGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAA
TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCT
Found at i:89013302 original size:144 final size:144
Alignment explanation
Indices: 89013041--89013370 Score: 561
Period size: 144 Copynumber: 2.3 Consensus size: 144
89013031 CCGAATGGCT
*
89013041 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGATAAAGCCGAA
* *
89013106 TGGCTAACGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAGTGGCTAATGTGAAATAT
66 TGGCTAACGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
89013171 GTATGAGATATGTA
131 GTATGAGATACGTA
*
89013185 TATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAGATATGTATATGTGATAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGATAAAGCCGAA
* * *
89013250 TGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
66 TGGCTAACGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
89013315 GTATGAGATACGTA
131 GTATGAGATACGTA
* * *
89013329 TATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAGA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
89013371 CGTGTGTATA
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
144 174 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.29
Consensus pattern (144 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGATAAAGCCGAA
TGGCTAACGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
GTATGAGATACGTA
Found at i:89013657 original size:37 final size:37
Alignment explanation
Indices: 89013512--89013656 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
89013502 TGAAATATAT
* *
89013512 TCCGAGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
89013549 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
89013586 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
89013623 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
89013657 TCATCTCAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:89015217 original size:159 final size:156
Alignment explanation
Indices: 89014928--89015243 Score: 474
Period size: 159 Copynumber: 2.0 Consensus size: 156
89014918 GTTATATAGC
*
89014928 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTTATAGCCGGGCTAAGTCCCGAGGAGCATTCG
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTTATA-CCGGGCTAAGTCCCGAAGAGCATTCG
** * *
89014993 TGCTGATGTTATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGT
65 TGCTGATAATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGATAAGT
89015058 TCCGAAGAGCATTCGTGCTGATGTTATAT
130 TCCGAAGAGCATTCGTGCT-A-GTTATAT
* *
89015087 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG-TAT-CCGGGCTAAGTTCCGAAGAGCATT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCT-G--ATGTTATACCGGGCTAAGTCCCGAAGAGCATT
* *
89015150 CGTGCTGGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGATAA
63 CGTGCTGATAATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGATAA
*
89015215 GTTCCGAAGAGGATTCGTGCTAGTTATAT
128 GTTCCGAAGAGCATTCGTGCTAGTTATAT
89015244 ATCCAGGCTA
Statistics
Matches: 144, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
157 7 0.05
158 1 0.01
159 129 0.90
160 1 0.01
161 3 0.02
162 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (156 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTGATGTTATACCGGGCTAAGTCCCGAAGAGCATTCGT
GCTGATAATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCCGGGATAAGTT
CCGAAGAGCATTCGTGCTAGTTATAT
Found at i:89015263 original size:40 final size:40
Alignment explanation
Indices: 89014927--89015254 Score: 429
Period size: 40 Copynumber: 8.2 Consensus size: 40
89014917 AGTTATATAG
*
89014927 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-G--ATGTTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG-TAT
* * *
89014965 AGCCGGGCTAAGTCCCGAGGAGCATTCGTGCTGATGT--TATAT
1 --CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-A-GTAATGTAT
*
89015007 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
89015047 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-G--ATGTTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG-TAT
*
89015085 ATCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 -CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
*
89015126 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
89015166 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
* * * *
89015206 CCGGGATAAGTTCCGAAGAGGATTCGTGCTAGTTATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
*
89015246 CCAGGCTAA
1 CCGGGCTAA
89015255 ACCTCGAAGG
Statistics
Matches: 262, Mismatches: 15, Indels: 22
0.88 0.05 0.07
Matches are distributed among these distances:
37 3 0.01
38 5 0.02
39 31 0.12
40 212 0.81
41 3 0.01
42 6 0.02
43 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTAT
Found at i:89015367 original size:29 final size:28
Alignment explanation
Indices: 89015286--89015383 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
89015276 GAGTTATGAG
* * * *
89015286 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
**
89015314 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATTGA
*
89015342 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
89015371 GCGCTATGTGTGC
1 GCACTATGTGTGC
89015384 AAAATCAGTC
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 33 0.58
29 24 0.42
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:89018834 original size:48 final size:48
Alignment explanation
Indices: 89018763--89019147 Score: 644
Period size: 48 Copynumber: 8.0 Consensus size: 48
89018753 CAAGATAAAT
89018763 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
89018811 ATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
89018859 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
89018907 ATAGGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
89018955 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
89019003 ATATGTATATGTGATAAAGCCGAATGGCTACTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
89019051 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
89019099 ATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
89019147 A
1 A
89019148 CGTGTGTATA
Statistics
Matches: 320, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 320 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:89019339 original size:37 final size:37
Alignment explanation
Indices: 89019289--89019434 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
89019279 GGAAATATAT
*
89019289 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
89019326 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
89019363 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
89019400 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
89019435 CATCTGAGCT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:89021607 original size:46 final size:46
Alignment explanation
Indices: 89021557--89021732 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
89021547 TGGTTGAGCA
*
89021557 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
89021603 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACCAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C--G
89021648 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
89021696 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89021733 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:89021713 original size:93 final size:93
Alignment explanation
Indices: 89021554--89021725 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
89021544 GGATGGTTGA
* * *
89021554 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
89021619 TGAGTCCGAGTTCGTGAGATGTAACCAG
66 TGAGTCCGAGTTCGTGAGATGTAACCAG
*
89021647 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
89021712 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
89021726 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACCAG
Found at i:89027110 original size:46 final size:46
Alignment explanation
Indices: 89027060--89027235 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
89027050 TGGTTGAGCA
*
89027060 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
89027106 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACCAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C--G
89027151 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
89027199 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89027236 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:89027216 original size:93 final size:93
Alignment explanation
Indices: 89027057--89027228 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
89027047 GGATGGTTGA
* * *
89027057 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
89027122 TGAGTCCGAGTTCGTGAGATGTAACCAG
66 TGAGTCCGAGTTCGTGAGATGTAACCAG
*
89027150 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
89027215 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
89027229 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACCAG
Found at i:89029912 original size:48 final size:48
Alignment explanation
Indices: 89029782--89030162 Score: 592
Period size: 48 Copynumber: 8.0 Consensus size: 48
89029772 CACATAAAAT
*
89029782 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG-G
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
* *
89029829 ATATGCATATGT-GTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
89029876 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
*
89029924 ATAGGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
*
89029972 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
* *
89030020 ATATGTATATGTGATAAAGCCGAATGGCT-ACTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAC-GTGAAATATGTATGAG
**
89030068 ATATGTATATGTGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
* * ** *
89030115 ATACGTATATGTGGTAAAG-CGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
89030162 A
1 A
89030163 CGTGTGTATA
Statistics
Matches: 314, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 33 0.11
47 94 0.30
48 187 0.60
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAG
Found at i:89030392 original size:37 final size:37
Alignment explanation
Indices: 89030304--89030449 Score: 224
Period size: 37 Copynumber: 3.9 Consensus size: 37
89030294 GGAAATATAT
*
89030304 TCCGGGTAAGACCCGATTGATTACGTGTGG-GATTTTG
1 TCCGGGTAAGACCCGA-TGACTACGTGTGGAGATTTTG
*
89030341 T-CGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
89030377 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
89030414 TCCGGGTAAGACCCGATAAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGAT-GACTACGTGTGGAGATTT
89030450 CATCTGAGCT
Statistics
Matches: 101, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
35 12 0.12
36 21 0.21
37 52 0.51
38 16 0.16
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:89032621 original size:46 final size:46
Alignment explanation
Indices: 89032571--89032746 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
89032561 TGGTTGAGCA
89032571 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89032617 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
89032662 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89032710 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89032747 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:89032727 original size:93 final size:93
Alignment explanation
Indices: 89032568--89032739 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
89032558 GGATGGTTGA
* *
89032568 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89032633 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
89032661 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89032726 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
89032740 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89040199 original size:46 final size:46
Alignment explanation
Indices: 89040149--89040324 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
89040139 TGGTTGAGCA
89040149 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89040195 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
89040240 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
89040288 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
89040325 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:89040305 original size:93 final size:93
Alignment explanation
Indices: 89040146--89040317 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
89040136 GGATGGTTGA
* *
89040146 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89040211 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
89040239 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
89040304 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
89040318 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89044364 original size:39 final size:38
Alignment explanation
Indices: 89044315--89044428 Score: 156
Period size: 39 Copynumber: 2.9 Consensus size: 38
89044305 TATCACGATT
*
89044315 TGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAAC
* *
89044354 TGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCTAC
1 TGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAAC
*
89044393 TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 T-GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
89044429 TTTCCAGCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 38 0.57
40 29 0.43
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (38 bp):
TGCACAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
Found at i:89044422 original size:40 final size:40
Alignment explanation
Indices: 89044284--89044466 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
89044274 CCGCACCAAG
* * * * * * * *
89044284 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
89044324 GCCTTCGGGTCTTAGCCCGGATTTAACAACT-GCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
89044363 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * * *
89044403 GCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
89044443 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
89044467 CATTCAATTT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 35 0.29
40 86 0.71
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:89052515 original size:40 final size:40
Alignment explanation
Indices: 89052377--89052558 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 40
89052367 CCGCACCAAG
* * * * * * * *
89052377 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
89052417 GCCTTCGGGTCTTAGCCCGGATTTAACAACT-GCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
89052456 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
89052496 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
89052535 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
89052559 CATTCAATTT
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 64 0.53
40 57 0.47
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:89052541 original size:79 final size:79
Alignment explanation
Indices: 89052409--89052558 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
89052399 ATCACGATTT
* * * *
89052409 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTGCACGAATGCCTTCGGGTCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACAGCACGAATGCCTTCGGGGCTTAGCCC
89052474 GGATATAGCTACTA
66 GGATATAGCTACTA
* *** * *
89052488 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCAGCA-TAATTGTCTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACAGCACGAA-TGCCTTCGGGGCTTAGCC
89052552 CGGATAT
65 CGGATAT
89052559 CATTCAATTT
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 2 0.03
79 58 0.97
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAACAACAGCACGAATGCCTTCGGGGCTTAGCCC
GGATATAGCTACTA
Found at i:89062516 original size:207 final size:205
Alignment explanation
Indices: 89062145--89062901 Score: 1088
Period size: 207 Copynumber: 3.7 Consensus size: 205
89062135 GCAGATCTGG
* * * *
89062145 CTGAAGCAAGAACCACGATGGTTTGCCATCCTTGTGCTTACAACGAACAAAATCGAAGACATAGC
1 CTGAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAAC-AAATCGAAGACATAGC
89062210 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
64 TGATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
** *
89062275 GAGAACAAATCGAAGTTTGGAGTCTCCATATTCGATAGAGAGTAGATATATAGAAGATCTGGCCT
129 GAGAACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGAGTAGATACATAG-AGATCTGGCCT
89062340 TCAGATGTTTATA
193 TCAGATGTTTATA
* * *
89062353 CTAAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGATCAAAATCGAAGACATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAAC-AAATCGAAGACATAGCT
*
89062418 GATTTGGCTTTCACGTGCTTACAATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
89062483 AGAACAAATCGAAGTTTGGTGTCTCCATATTCGACGGAGAGCAGATACAT--AGCTCTGGCCTTC
130 AGAACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGAGTAGATACATAGAGATCTGGCCTTC
89062546 AGATGTTTATA
195 AGATGTTTATA
* * *
89062557 CTGAAGCAGATCCAAGATGATTTGGCATCATTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCT
** * * * *
89062621 GATTTATCTTTCACGTGCTTACGTTAAAGCAATTCTAAGATGATTTGGCATCTCTGTATTGTCAA
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * **
89062686 AGAACAAATTGAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGAGTAGATACATAG-AGATCTGGCCTT
* *
89062751 CAGATGATTAGA
194 CAGATGTTTATA
* *
89062763 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * * * *
89062828 AATTGGTTTTCGCGTGCTTACGCTGAAGCAAATCTAATATGATTTGGCATCTCTGTATTGTTAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
89062893 GAACAAATC
131 GAACAAATC
89062902 AAAGAAGTAG
Statistics
Matches: 492, Mismatches: 52, Indels: 12
0.88 0.09 0.02
Matches are distributed among these distances:
202 1 0.00
203 118 0.24
204 64 0.13
206 141 0.29
207 163 0.33
208 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGAGTCTCCATATTCGACGGAGAGTAGATACATAGAGATCTGGCCTTCA
GATGTTTATA
Found at i:89064561 original size:28 final size:28
Alignment explanation
Indices: 89064530--89064585 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
89064520 TTTCTAATTA
* * *
89064530 AATTCAATTTTAATCCTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
* *
89064558 AATTTACTTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
89064586 TTATAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:89064669 original size:12 final size:11
Alignment explanation
Indices: 89064631--89064705 Score: 60
Period size: 12 Copynumber: 6.5 Consensus size: 11
89064621 ATTATTCTTA
89064631 TTATCATATATT
1 TTAT-ATATATT
* **
89064643 TTATCTATAAA
1 TTATATATATT
89064654 TTATATTATATT
1 TTATA-TATATT
*
89064666 TTATATTTTATT
1 TTATA-TATATT
*
89064678 TTATATATTTCT
1 TTATATATAT-T
*
89064690 TTATATATTTT
1 TTATATATATT
89064701 TTATA
1 TTATA
89064706 AAATTGTATT
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
11 17 0.33
12 35 0.67
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATATATATT
Found at i:89065146 original size:14 final size:14
Alignment explanation
Indices: 89065127--89065156 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
89065117 TCTATCTTTC
*
89065127 TTATATATTTTTTA
1 TTATATATTATTTA
89065141 TTATATATTATTTA
1 TTATATATTATTTA
89065155 TT
1 TT
89065157 TTGTTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:89065155 original size:25 final size:27
Alignment explanation
Indices: 89065127--89065192 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 27
89065117 TCTATCTTTC
89065127 TTATATATTTTTTATTATA-T-ATTAT
1 TTATATATTTTTTATTATACTAATTAT
89065152 TTAT-T-TTGTTTT-TTATACTAATTAT
1 TTATATATT-TTTTATTATACTAATTAT
*
89065177 TT-TACCATTTTTTATT
1 TTATA-TATTTTTTATT
89065193 TGCAAAATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
23 7 0.21
24 7 0.21
25 11 0.33
26 4 0.12
27 4 0.12
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (27 bp):
TTATATATTTTTTATTATACTAATTAT
Found at i:89065218 original size:11 final size:10
Alignment explanation
Indices: 89065203--89065261 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
89065193 TGCAAAATAC
89065203 TTATTATATT
1 TTATTATATT
89065213 CTTATTAT-TT
1 -TTATTATATT
89065223 TATATTATATT
1 T-TATTATATT
**
89065234 TCCTTATATT
1 TTATTATATT
89065244 TTATTCATATT
1 TTATT-ATATT
*
89065255 ATATTAT
1 TTATTAT
89065262 TATATATAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
9 1 0.03
10 20 0.50
11 19 0.47
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATT
Found at i:89069695 original size:27 final size:27
Alignment explanation
Indices: 89069396--89069702 Score: 373
Period size: 27 Copynumber: 11.4 Consensus size: 27
89069386 TGGATAAGTT
* * **
89069396 GTAGAATTACCGAAATACCCCTGTAAA
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89069423 GTAGAATTA-TCGAAATACCCCTGTAGG
1 GTAGAATTACT-GAAATACCCTTGTAGG
* * *
89069450 GTAAAATTACCGAAATACCTTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89069477 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89069504 GTAGAAATACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89069531 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
89069558 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
89069585 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCTTGTAGG
* *
89069612 ATAGAATTACTGAAATATCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
89069639 GTAGAAATACTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCTTGTAGG
* *
89069666 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89069693 GTAAAATTAC
1 GTAGAATTAC
89069703 CATTTTGCCC
Statistics
Matches: 241, Mismatches: 37, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
27 241 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCTTGTAGG
Found at i:89070442 original size:2 final size:2
Alignment explanation
Indices: 89070435--89070476 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
89070425 GTGGCTTTGC
89070435 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
89070477 TATATATATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:89077414 original size:27 final size:27
Alignment explanation
Indices: 89077117--89077421 Score: 373
Period size: 27 Copynumber: 11.4 Consensus size: 27
89077107 TGGATAAGTT
* * **
89077117 GTAGAATTACCGAAATACCCCTGTAAA
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89077144 GTAGAATTA-TCGAAATACCCCTGTAGG
1 GTAGAATTACT-GAAATACCCTTGTAGG
* * *
89077171 GTAAAATTACCGAAATACCTTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89077198 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89077225 GTAGAAATACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89077252 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
89077279 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89077306 GTAGAATTAC-GAAATACCC-TGTAAG
1 GTAGAATTACTGAAATACCCTTGTAGG
* *
89077331 ATAGAATTACTGAAATATCCTTGTAGG
1 GTAGAATTACTGAAATACCCTTGTAGG
* * *
89077358 GTAGAAATACTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCTTGTAGG
* *
89077385 GTAGAATTACTGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCTTGTAGG
*
89077412 GTAAAATTAC
1 GTAGAATTAC
89077422 CATTTTGCCC
Statistics
Matches: 239, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.06
26 17 0.07
27 208 0.87
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCTTGTAGG
Found at i:89077433 original size:133 final size:135
Alignment explanation
Indices: 89077118--89077418 Score: 448
Period size: 133 Copynumber: 2.3 Consensus size: 135
89077108 GGATAAGTTG
* * ** * *
89077118 TAGAATTACCGAAATACCCCTGTAAAGTAGAATTATCGAAATACCCCTGTAGGGTAAAATTACCG
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAAAATTACCG
* * *
89077183 AAATACCTTTGTAGGATAGAATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCTTG
66 AAATACCTCTGTAAGATAGAATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
89077248 TAGGA
131 TAGGA
*
89077253 TAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTA-CG
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAAAATTACCG
*
89077317 AAATACC-CTGTAAGATAGAATTACTGAAATATCCTTGTAGGGTAGAAATACTGAAATACCCCTG
66 AAATACCTCTGTAAGATAGAATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
89077381 TAAGG-
131 T-AGGA
* *
89077386 TAGAATTACTGAGATACCCTTGTGGGGTA-AAAT
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAAAT
89077419 TACCATTTTG
Statistics
Matches: 152, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
132 4 0.03
133 81 0.53
134 12 0.08
135 55 0.36
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (135 bp):
TAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAAAATTACCG
AAATACCTCTGTAAGATAGAATTACTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTG
TAGGA
Found at i:89078160 original size:2 final size:2
Alignment explanation
Indices: 89078153--89078186 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
89078143 GTGGCTTTGC
89078153 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
89078187 TATATATATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:89084866 original size:27 final size:27
Alignment explanation
Indices: 89084832--89085201 Score: 300
Period size: 27 Copynumber: 13.4 Consensus size: 27
89084822 TGGATAAGTT
*
89084832 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * * *
89084859 GTAAAATTACCAAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
** * *
89084886 GTAGAATTATTGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
89084913 GTAGAATTATCGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
89084939 GATAGAATTATCGAAATACCCTTGTAGGGTAG
1 G-TAGAATTACCGAAATACCCCTGTA----AG
* *
89084971 GAATACCGAAATACCGAAATACCCCTGTAGG
1 G--TA--GAATTACCGAAATACCCCTGTAAG
**
89085002 GTAGAATTATTGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
89085028 GATACAATTACCGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
**
89085056 GTAGAAAGACCGAAATACCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
89085082 GTTAGAATTACCGAAATACCCCTAT-AG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* *
89085109 GATAGAATTACCAAAATACCCCTAT-AG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* * *
89085136 GATAGAGTTACCGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* * **
89085164 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
89085191 GTAAAATTACC
1 GTAGAATTACC
89085202 ATTTTGCCCC
Statistics
Matches: 285, Mismatches: 45, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.02
27 246 0.86
28 4 0.01
29 2 0.01
31 2 0.01
32 3 0.01
33 3 0.01
35 19 0.07
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:89084921 original size:54 final size:54
Alignment explanation
Indices: 89084832--89085201 Score: 389
Period size: 54 Copynumber: 6.7 Consensus size: 54
89084822 TGGATAAGTT
* * * * *
89084832 GTAGAATTACCGAAATACCCTTGTAAGGTAAAATTACCAAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
** * *
89084886 GTAGAATTATTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * *
89084940 ATAGAATTATCGAAATACCCTTGTAGGGTAGGAATACCGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTA-GAAT-------TACCGAAATACCCCTGTAGG
** * * *
89085002 GTAGAATTATTGAAATACCCCTGTAGGATACAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
** * *
89085056 GTAGAAAGACCGAAATACCCCTGTAGGTTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * * * * *
89085110 ATAGAATTACCAAAATACCCCTATAGGATAGAGTTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * * *
89085164 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
89085202 ATTTTGCCCC
Statistics
Matches: 262, Mismatches: 46, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
54 210 0.80
55 4 0.02
61 3 0.01
62 45 0.17
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
Found at i:89084967 original size:81 final size:81
Alignment explanation
Indices: 89084832--89085202 Score: 402
Period size: 81 Copynumber: 4.5 Consensus size: 81
89084822 TGGATAAGTT
* * *
89084832 GTAGAATTACCGAAATACCCTTGTAAGG-TAAAATTACCAAAATACCCCTATAGGGTAGAATTAT
1 GTAGAATTACCGAAATACCCCTGT-AGGATAGAATTACCAAAATACCCCTATAGGGTAGAATTAC
* *
89084896 TGAAATACCCCTATAGG
65 CGAAATACCCCTGTAGG
* * * * *
89084913 GTAGAATTATCGAAATACCCCTGTAGGATAGAATTATCGAAATACCCTTGTAGGGTAGGAATACC
1 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTATAGGGTA-GAAT---
89084978 GAAATACCGAAATACCCCTGTAGG
62 ----TACCGAAATACCCCTGTAGG
** * * * * **
89085002 GTAGAATTATTGAAATACCCCTGTAGGATACAATTACCGAAATACCCTTGTAGGGTAGAAAGACC
1 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
89085067 GAAATACCCCTGTAGG
66 GAAATACCCCTGTAGG
* * * *
89085083 TTAGAATTACCGAAATACCCCTATAGGATAGAATTACCAAAATACCCCTATAGGATAGAGTTACC
1 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
*
89085148 GAAATACCCTTGTAGG
66 GAAATACCCCTGTAGG
* * * * *
89085164 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCA
89085203 TTTTGCCCCT
Statistics
Matches: 246, Mismatches: 35, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
80 3 0.01
81 165 0.67
82 4 0.02
88 3 0.01
89 71 0.29
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTATAGGGTAGAATTACC
GAAATACCCCTGTAGG
Found at i:89085020 original size:62 final size:62
Alignment explanation
Indices: 89084923--89085047 Score: 189
Period size: 62 Copynumber: 2.0 Consensus size: 62
89084913 GTAGAATTAT
* * *
89084923 CGAAATACCCCTGTAGGATAGAATTATCGAAATACCCTTGTAGGGTAGGAA-TACCGAAATAC
1 CGAAATACCCCTGTAGGATAGAATTATCGAAATACCCCTGTAGGATA-CAATTACCGAAATAC
* *
89084985 CGAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGATACAATTACCGAAATAC
1 CGAAATACCCCTGTAGGATAGAATTATCGAAATACCCCTGTAGGATACAATTACCGAAATAC
89085047 C
1 C
89085048 CTTGTAGGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 2 0.04
62 55 0.96
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (62 bp):
CGAAATACCCCTGTAGGATAGAATTATCGAAATACCCCTGTAGGATACAATTACCGAAATAC
Found at i:89085048 original size:89 final size:88
Alignment explanation
Indices: 89084897--89085155 Score: 343
Period size: 89 Copynumber: 3.0 Consensus size: 88
89084887 TAGAATTATT
* *
89084897 GAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGATAGAATTATCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTT
89084962 GTAGGGTAGGAATACCGAAATACC
66 GTAGGGTA-GAATACCGAAATACC
* *
89084986 GAAATACCCCTGTAGGGTAGAATTATTGAAATACCCCTGTAGGATACAATTACCGAAATACCCTT
1 GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTT
89085051 GTAGGGTAGAA-A--G----ACC
66 GTAGGGTAGAATACCGAAATACC
* * * * *
89085067 GAAATACCCCTGTAGGTTAGAATTACCGAAATACCCCTATAGGATAGAATTACCAAAATACCCCT
1 GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTT
* * *
89085132 ATAGGATAGAGTTACCGAAATACC
66 GTAGGGTAGA-ATACCGAAATACC
89085156 CTTGTAGGGT
Statistics
Matches: 148, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
81 69 0.47
83 1 0.01
85 2 0.01
87 1 0.01
88 3 0.02
89 72 0.49
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.23
Consensus pattern (88 bp):
GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCTT
GTAGGGTAGAATACCGAAATACC
Found at i:89085969 original size:33 final size:32
Alignment explanation
Indices: 89085922--89085983 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
89085912 CGCTGCAATA
* *
89085922 TGGTGGCTTCGCCACATATATATATATCTGTTC
1 TGGTGGCCTAGCCACA-ATATATATATCTGTTC
* *
89085955 TGGTGGCCTAGCCACAATATCTGTATCTG
1 TGGTGGCCTAGCCACAATATATATATCTG
89085984 GTGACTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 11 0.44
33 14 0.56
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (32 bp):
TGGTGGCCTAGCCACAATATATATATCTGTTC
Found at i:89085997 original size:27 final size:26
Alignment explanation
Indices: 89085945--89086004 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
89085935 ACATATATAT
*
89085945 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
89085971 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
89085998 ATATCTG
1 ATATCTG
89086005 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:89088543 original size:24 final size:22
Alignment explanation
Indices: 89088503--89088552 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
89088493 AAATTGACCC
* *
89088503 TTATTTATGTTTAATTAGTAAA
1 TTATTGATGTTTAATTAATAAA
*
89088525 TTATTGATGATTTCAATTAATTAA
1 TTATTGATG-TTT-AATTAATAAA
89088549 TTAT
1 TTAT
89088553 GGTTTAATGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 8 0.35
23 3 0.13
24 12 0.52
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.54
Consensus pattern (22 bp):
TTATTGATGTTTAATTAATAAA
Found at i:89088652 original size:24 final size:24
Alignment explanation
Indices: 89088624--89088671 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
89088614 ATAATGGTAA
89088624 GTAAGCATTGAGGTGATTTTGTGC
1 GTAAGCATTGAGGTGATTTTGTGC
89088648 GTAAGCATTGAGGTGATTTTGTGC
1 GTAAGCATTGAGGTGATTTTGTGC
89088672 AATTTAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.08, G:0.33, T:0.38
Consensus pattern (24 bp):
GTAAGCATTGAGGTGATTTTGTGC
Done.