Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 307 of 427
Found at i:89090900 original size:16 final size:16
Alignment explanation
Indices: 89090860--89090901 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
89090850 CAACCAATAC
89090860 TCTG-GGCGTACTCTT
1 TCTGAGGCGTACTCTT
* * *
89090875 CCTTAAGCGTACTCTT
1 TCTGAGGCGTACTCTT
89090891 TCTGAGGCGTA
1 TCTGAGGCGTA
89090902 ACCTTTATTT
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.14, C:0.26, G:0.24, T:0.36
Consensus pattern (16 bp):
TCTGAGGCGTACTCTT
Found at i:89094169 original size:27 final size:27
Alignment explanation
Indices: 89094089--89094193 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 27
89094079 TGCAGAGCTC
* * * *
89094089 ACCATAAAGATTTTTCTGTCATGATTC
1 ACCACAAAGGTTTTTCTTTCATGATTT
* * **
89094116 ACCATAAAGGTTTTTCTTTAACAATTT
1 ACCACAAAGGTTTTTCTTTCATGATTT
* *
89094143 TCCACAATGGTTTTTCTTTCATGATTT
1 ACCACAAAGGTTTTTCTTTCATGATTT
*
89094170 GCCACAAAGGCTTTTT-TTTCATGA
1 ACCACAAAGG-TTTTTCTTTCATGA
89094194 CGTGTTTATT
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
27 58 0.92
28 5 0.08
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.44
Consensus pattern (27 bp):
ACCACAAAGGTTTTTCTTTCATGATTT
Found at i:89098109 original size:46 final size:46
Alignment explanation
Indices: 89098042--89098214 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
89098032 TGTAACCCGC
*
89098042 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
89098088 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* *
89098138 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC--TCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
89098179 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
89098215 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
40 1 0.01
41 3 0.03
42 1 0.01
43 2 0.02
44 29 0.27
46 34 0.31
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:89098206 original size:91 final size:92
Alignment explanation
Indices: 89098049--89098218 Score: 306
Period size: 91 Copynumber: 1.8 Consensus size: 92
89098039 CGCCCATAAG
*
89098049 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACG-TCGCATCCATAAGTGAACTCGGACTCAACTCA
89098114 ACGAGTTCGGATGCCTAGTTACATCTCA
65 ACGAGTTCGGATGCCTAGTTACATCTCA
*
89098142 CGAACTCGGACTCAACTCAACGAGTTCGGAC-TCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAA
89098206 CGAGTTCGGATGC
66 CGAGTTCGGATGC
89098219 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 46 0.61
93 29 0.39
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:89105726 original size:93 final size:93
Alignment explanation
Indices: 89105614--89105785 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
89105604 CGCCCATAAG
* *
89105614 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
89105679 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
89105707 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
89105772 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
89105786 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:89105782 original size:46 final size:46
Alignment explanation
Indices: 89105607--89105782 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
89105597 TGTAACCCGC
* * *
89105607 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
89105653 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
89105703 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
89105746 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
89105783 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:89106889 original size:27 final size:26
Alignment explanation
Indices: 89106821--89106889 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 26
89106811 CGACTTGTAA
* *
89106821 AATTACCAAAGTACTCCCGATTTACAG
1 AATTACCAAAATAC-CCCAATTTACAG
***
89106848 AATTACCATTTTACCCTCAATTTACAG
1 AATTACCAAAATACCC-CAATTTACAG
89106875 AATTACCAAAATACC
1 AATTACCAAAATACC
89106890 TTGGTTTATA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCCAATTTACAG
Found at i:89106929 original size:27 final size:27
Alignment explanation
Indices: 89106875--89106998 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
89106865 CAATTTACAG
89106875 AATTACCAAAATA-CCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
89106901 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
89106928 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
89106955 AATTACCAAAATACCCATGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
89106982 AATTACTAAAATACCCT
1 AATTACCAAAATACCCT
89106999 GTAGGGTAAA
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 12 0.14
27 71 0.86
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:89106933 original size:80 final size:81
Alignment explanation
Indices: 89106859--89107024 Score: 185
Period size: 80 Copynumber: 2.1 Consensus size: 81
89106849 ATTACCATTT
* *
89106859 TACCCTCAATTTACAGAATTACCAAAATA-CCTTGGTTTATAAAATCACCAAAATACCCCTGGTT
1 TACCCTCAATTTACAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTT
*
89106923 TGTAAAATTACTAAAA
66 TGTAAAATTACCAAAA
*** * * * *
89106939 TACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGTAAAATTACTAAAATA-CCCT-GTA
1 TACCCTCAATTTACAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGT-
** *
89107002 GGGTAAAATTACCGAAA
65 TTGTAAAATTACCAAAA
89107019 TACCCT
1 TACCCT
89107025 GTAGGGTAGA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
79 2 0.03
80 47 0.66
81 22 0.31
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
TACCCTCAATTTACAAAATTACCAAAATACCCATGGTTTATAAAATCACCAAAATACCCCTGGTT
TGTAAAATTACCAAAA
Found at i:89106966 original size:54 final size:54
Alignment explanation
Indices: 89106875--89106998 Score: 205
Period size: 54 Copynumber: 2.3 Consensus size: 54
89106865 CAATTTACAG
* *
89106875 AATTACCAAAATA-CCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGTAA
* *
89106928 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGTAA
89106982 AATTACTAAAATACCCT
1 AATTACTAAAATACCCT
89106999 GTAGGGTAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 12 0.18
54 54 0.82
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.32
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATCACCAAAATACCCATGGTTTGTAA
Found at i:89107019 original size:26 final size:26
Alignment explanation
Indices: 89106952--89107041 Score: 110
Period size: 26 Copynumber: 3.4 Consensus size: 26
89106942 CCTTTGTTTA
**
89106952 TAAAATTACCAAAATACCCATGGT-TTG
1 TAAAATTACCAAAATACCC-T-GTAGGG
*
89106979 TAAAATTACTAAAATACCCTGTAGGG
1 TAAAATTACCAAAATACCCTGTAGGG
*
89107005 TAAAATTACCGAAATACCCTGTAGGG
1 TAAAATTACCAAAATACCCTGTAGGG
*
89107031 TAGAATTACCA
1 TAAAATTACCA
89107042 TTTTGCCCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
25 2 0.04
26 35 0.64
27 18 0.33
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTGTAGGG
Found at i:89110736 original size:27 final size:27
Alignment explanation
Indices: 89110715--89110899 Score: 226
Period size: 27 Copynumber: 6.9 Consensus size: 27
89110705 TTACCCTCAA
*
89110715 TTTACAGAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
* * *
89110742 TTTATAAAATCACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** *
89110769 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTGG
*
89110796 TTTACAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCCTTGG
** * *
89110823 TTTGTAAAATTACTAAAATACCCTTTG
1 TTTACAAAATTACCAAAATACCCTTGG
* *
89110850 TTTATAAAATTACCAAAATACCCATGG
1 TTTACAAAATTACCAAAATACCCTTGG
* *
89110877 TTTGCAAAATTACTAAAATACCC
1 TTTACAAAATTACCAAAATACCC
89110900 CTGTAGGGTA
Statistics
Matches: 134, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTGG
Found at i:89110764 original size:54 final size:54
Alignment explanation
Indices: 89110722--89110899 Score: 302
Period size: 54 Copynumber: 3.3 Consensus size: 54
89110712 CAATTTACAG
* *
89110722 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
*
89110776 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
* * *
89110830 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGCAA
1 AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
89110884 AATTACTAAAATACCC
1 AATTACTAAAATACCC
89110900 CTGTAGGGTA
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
Found at i:89110911 original size:81 final size:81
Alignment explanation
Indices: 89110715--89110927 Score: 257
Period size: 81 Copynumber: 2.6 Consensus size: 81
89110705 TTACCCTCAA
* * *** * * *
89110715 TTTACAGAATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTGGGTAAAATTACCAAAATACCCTTGGTTTATAAAATT
* *
89110780 ACTAAAATACCCTTGG
66 ACCAAAATACCCATGG
** * *
89110796 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAATT
1 TTTACAAAATTACCAAAATACCCCTGGTGGGTAAAATTACCAAAATACCCTTGGTTTATAAAATT
89110861 ACCAAAATACCCATGG
66 ACCAAAATACCCATGG
* * *
89110877 TTTGCAAAATTACTAAAATACCCCT-GTAGGGTAAAATTACCGAAATACCCT
1 TTTACAAAATTACCAAAATACCCCTGGT-GGGTAAAATTACCAAAATACCCT
89110928 GTAGGGTAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 113 0.98
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (81 bp):
TTTACAAAATTACCAAAATACCCCTGGTGGGTAAAATTACCAAAATACCCTTGGTTTATAAAATT
ACCAAAATACCCATGG
Found at i:89110912 original size:27 final size:26
Alignment explanation
Indices: 89110722--89110926 Score: 203
Period size: 27 Copynumber: 7.6 Consensus size: 26
89110712 CAATTTACAG
* *
89110722 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCT-GTTTGTAA
*
89110749 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCT-GTTTGTAA
* * **
89110776 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCCT-GTTTGTAA
89110803 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCT-GTTTGTAA
* * *
89110830 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCC-CTGTTTGTAA
* *
89110857 AATTACCAAAATACCCATGGTTTGCAA
1 AATTACCAAAATACCCCT-GTTTGTAA
* **
89110884 AATTACTAAAATACCCCTGTAGGGTAA
1 AATTACCAAAATACCCCTGT-TTGTAA
*
89110911 AATTACCGAAATACCC
1 AATTACCAAAATACCC
89110927 TGTAGGGTAG
Statistics
Matches: 149, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
26 3 0.02
27 145 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCCTGTTTGTAA
Found at i:89110912 original size:54 final size:53
Alignment explanation
Indices: 89110722--89110926 Score: 230
Period size: 54 Copynumber: 3.8 Consensus size: 53
89110712 CAATTTACAG
* * ** *
89110722 AATTACCAAAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCCT-GTGGATAAAATTACCAAAATACCCCTGGTTTGTAA
* ** *
89110776 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCCT-GTGGATAAAATTACCAAAATACCCCTGGTTTGTAA
* ** * *
89110830 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGCAA
1 AATTACTAAAATACCC-CTGTGGATAAAATTACCAAAATACCCCTGGTTTGTAA
* *
89110884 AATTACTAAAATACCCCTGTAGGGTAAAATTACCGAAATACCC
1 AATTACTAAAATACCCCTGT-GGATAAAATTACCAAAATACCC
89110927 TGTAGGGTAG
Statistics
Matches: 138, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
53 3 0.02
54 133 0.96
55 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACTAAAATACCCCTGTGGATAAAATTACCAAAATACCCCTGGTTTGTAA
Found at i:89117188 original size:2 final size:2
Alignment explanation
Indices: 89117181--89117205 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
89117171 TGTGTAATTT
89117181 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
89117206 TTATCATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:89117842 original size:24 final size:25
Alignment explanation
Indices: 89117814--89117877 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
89117804 TCAACCAAAT
* * *
89117814 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
89117838 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
89117863 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
89117878 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:89117928 original size:24 final size:24
Alignment explanation
Indices: 89117901--89117950 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
89117891 TATGCATCGA
**
89117901 CATTTAAATCTGCACACATAGTGC
1 CATTTAAATCCACACACATAGTGC
*
89117925 CATTTAATTCCACACACATAGTGC
1 CATTTAAATCCACACACATAGTGC
89117949 CA
1 CA
89117951 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (24 bp):
CATTTAAATCCACACACATAGTGC
Found at i:89118114 original size:94 final size:94
Alignment explanation
Indices: 89117906--89118280 Score: 689
Period size: 94 Copynumber: 4.0 Consensus size: 94
89117896 ATCGACATTT
* * *
89117906 AAATCTGCACACATAGTGCCATTTAATTCCACACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
89117971 GG-AATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
89117999 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
89118064 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
89118093 AAATCTGTACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
89118158 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
89118187 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
89118252 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
89118281 CGATCACATT
Statistics
Matches: 274, Mismatches: 7, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
93 64 0.23
94 210 0.77
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:89125884 original size:94 final size:94
Alignment explanation
Indices: 89125765--89125952 Score: 331
Period size: 94 Copynumber: 2.0 Consensus size: 94
89125755 ATCGACATTC
* * *
89125765 AAATCTGCATACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
89125830 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAACTTACTTAATTCAAATAGCATATA
*
89125859 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
89125924 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAACTTACTTAATTCAAATAGCATATA
89125953 CGGTCACATT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 89 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAACTTACTTAATTCAAATAGCATATA
Found at i:89129867 original size:28 final size:28
Alignment explanation
Indices: 89129827--89129908 Score: 121
Period size: 28 Copynumber: 2.9 Consensus size: 28
89129817 GTCACCAGAT
* *
89129827 ACAGATATTTTGTGGCAGTGCCACCATA
1 ACAGATAATTTGTGGCAGTGCCACCAAA
*
89129855 ACAGATAATTTGTGGCAGGGCCACCAAA
1 ACAGATAATTTGTGGCAGTGCCACCAAA
89129883 ACAGATAATTTGTGGCA-TAGCCACCA
1 ACAGATAATTTGTGGCAGT-GCCACCA
89129909 GGACGCTTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (28 bp):
ACAGATAATTTGTGGCAGTGCCACCAAA
Found at i:89130064 original size:28 final size:28
Alignment explanation
Indices: 89130015--89130163 Score: 246
Period size: 28 Copynumber: 5.3 Consensus size: 28
89130005 AAATTAACCC
*
89130015 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
*
89130043 TAGGGGTATAATGGTAACTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
89130071 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
89130099 TAGGGGTATAATGGGAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
89130127 TAGGGGTATAATGGTAATTTTACATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
89130155 TAGGGGTAT
1 TAGGGGTAT
89130164 TCTAGTACAT
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 1 0.01
28 113 0.99
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:89134788 original size:20 final size:20
Alignment explanation
Indices: 89134763--89134802 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
89134753 TAAATGTAGT
89134763 AACATAATTGTCATTTTGAG
1 AACATAATTGTCATTTTGAG
89134783 AACATAATTGTCATTTTGAG
1 AACATAATTGTCATTTTGAG
89134803 CAATTTAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (20 bp):
AACATAATTGTCATTTTGAG
Found at i:89142211 original size:46 final size:46
Alignment explanation
Indices: 89142161--89142333 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
89142151 TGGTTGAGCA
*
89142161 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
89142207 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
89142254 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
89142300 -CCCAAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
89142334 GGGGCAGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 7 0.07
46 56 0.53
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:89142317 original size:93 final size:93
Alignment explanation
Indices: 89142158--89142328 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
89142148 GGATGGTTGA
* * *
89142158 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAACTCATTGAGT
89142223 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
89142251 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCCAAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAA-CTCATTGAG
89142315 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
89142329 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:89142595 original size:19 final size:20
Alignment explanation
Indices: 89142558--89142595 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
89142548 ATAAGGTGGT
89142558 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
89142578 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
89142596 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:89144587 original size:25 final size:26
Alignment explanation
Indices: 89144559--89144613 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
89144549 ATTGGGTTAT
* * *
89144559 GGGAGACAAACTAA-AATAAAGAAAG
1 GGGAGACAAAATAAGAAAAAAAAAAG
*
89144584 GGGA-ATAAAATAAGAAAAAAAAAAG
1 GGGAGACAAAATAAGAAAAAAAAAAG
89144609 GGGAG
1 GGGAG
89144614 TGTTCATCCT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.62, C:0.04, G:0.27, T:0.07
Consensus pattern (26 bp):
GGGAGACAAAATAAGAAAAAAAAAAG
Found at i:89146002 original size:29 final size:28
Alignment explanation
Indices: 89145900--89146003 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
89145890 GTGACAAGAT
* *
89145900 TGGCCCTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
* *
89145929 TGGCACTAAGTGTGCGAACTTAAATTATT
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
89145958 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
89145987 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
89146004 AATCGATTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 4 0.06
29 60 0.94
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:89146037 original size:57 final size:58
Alignment explanation
Indices: 89145928--89146037 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 58
89145918 CTTGAAATAT
* * *
89145928 ATGGCACTAAGTGTGCGAACTTAAATTATTTGGCACTATGTGTGCGAGCTTAAATCAC
1 ATGGCACTAAGTGTGCGAACATAAATTATTTAGCACTATGTGTGCGAACTTAAATCAC
**
89145986 ATGGCACTAAGTGTGCGAA-ATCGATT-TTTAAGCACTATGTGTGCGAACTTAA
1 ATGGCACTAAGTGTGCGAACATAAATTATTT-AGCACTATGTGTGCGAACTTAA
89146038 TGTATATATC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 3 0.07
57 24 0.52
58 19 0.41
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (58 bp):
ATGGCACTAAGTGTGCGAACATAAATTATTTAGCACTATGTGTGCGAACTTAAATCAC
Found at i:89147765 original size:29 final size:29
Alignment explanation
Indices: 89147732--89147862 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
89147722 TGACGAGATC
*
89147732 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
89147761 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
89147790 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
89147819 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
89147848 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
89147863 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:89155733 original size:29 final size:29
Alignment explanation
Indices: 89155700--89155810 Score: 159
Period size: 29 Copynumber: 3.8 Consensus size: 29
89155690 TGACGAGATC
*
89155700 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
* *
89155729 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAATATAT
*
89155758 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
* * *
89155787 GACACTATGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
89155811 AATACGGCTG
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:89156258 original size:27 final size:27
Alignment explanation
Indices: 89156228--89156286 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
89156218 TTAACACCCT
89156228 AGGGGCAAAAT-GGTAATTCTACCCTAC
1 AGGGG-AAAATCGGTAATTCTACCCTAC
* ** *
89156255 AGGGGTATTTCGGTAATTTTACCCTAC
1 AGGGGAAAATCGGTAATTCTACCCTAC
89156282 AGGGG
1 AGGGG
89156287 TATTTTAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (27 bp):
AGGGGAAAATCGGTAATTCTACCCTAC
Found at i:89156287 original size:27 final size:27
Alignment explanation
Indices: 89156239--89156301 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
89156229 GGGGCAAAAT
*
89156239 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
89156266 GGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
*
89156293 AGTAATTTT
1 GGTAATTTT
89156302 GCAAACCATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:89156314 original size:27 final size:27
Alignment explanation
Indices: 89156257--89156461 Score: 241
Period size: 27 Copynumber: 7.6 Consensus size: 27
89156247 TACCCTACAG
* ** *
89156257 GGGTATTTCGGTAATTTTACCCTA-CAG
1 GGGTATTTTGGTAATTTTA-CAAACCAA
* * *
89156284 GGGTATTTTAGTAATTTTGCAAACCAT
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
89156311 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
89156338 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
**
89156365 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
89156392 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
89156419 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
89156446 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
89156462 CTGTAAATTG
Statistics
Matches: 149, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 147 0.99
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:89156477 original size:54 final size:54
Alignment explanation
Indices: 89156284--89156461 Score: 302
Period size: 54 Copynumber: 3.3 Consensus size: 54
89156274 TACCCTACAG
* * *
89156284 GGGTATTTTAGTAATTTTGCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
89156338 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
89156392 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
89156446 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
89156462 CTGTAAATTG
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:89156487 original size:81 final size:81
Alignment explanation
Indices: 89156284--89156488 Score: 194
Period size: 81 Copynumber: 2.5 Consensus size: 81
89156274 TACCCTACAG
* * * * **** *
89156284 GGGTATTTTAGTAATTTTGCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAG
1 GGGTATTTTGGTAATTCTGTAAACCAAGGGTAAAACGGTAATTTTACAAACAAAGGGTATTTTAG
*
89156349 TAATTTTACAAACCAG
66 TAATTTTACAAACCAA
* ***** * * *
89156365 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTCTGTAAACCAAGGGTAAAACGGTAATTTTACAAACAAAGGGTATTTTAG
* *
89156430 TGATTTTATAAACCAA
66 TAATTTTACAAACCAA
***
89156446 GGGTATTTTGGTAATTCTGTAAATTGAGGGTAAAACGGTAATT
1 GGGTATTTTGGTAATTCTGTAAACCAAGGGTAAAACGGTAATT
89156489 CTGTAAATCG
Statistics
Matches: 104, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 104 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTCTGTAAACCAAGGGTAAAACGGTAATTTTACAAACAAAGGGTATTTTAG
TAATTTTACAAACCAA
Found at i:89160164 original size:25 final size:27
Alignment explanation
Indices: 89160128--89160186 Score: 88
Period size: 25 Copynumber: 2.3 Consensus size: 27
89160118 GGGCAAAATG
*
89160128 GTAA-TTTACCCTACA-GGGTA-TTTC
1 GTAATTTTACCCTACAGGGGTATTTTA
89160152 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAGGGGTATTTTA
89160179 GTAATTTT
1 GTAATTTT
89160187 TCAAACCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
24 4 0.13
25 11 0.35
26 5 0.16
27 11 0.35
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (27 bp):
GTAATTTTACCCTACAGGGGTATTTTA
Found at i:89160299 original size:27 final size:27
Alignment explanation
Indices: 89160169--89160292 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
89160159 TACCCTACAG
* *
89160169 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
89160196 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
89160223 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
89160250 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
89160277 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
89160293 CTGTAAATTG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:89160306 original size:27 final size:27
Alignment explanation
Indices: 89160276--89160346 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
89160266 TTATAAACCA
* *
89160276 AGGGTATTTTGGTAATTCTGTAAATTG
1 AGGGTAATTTGGTAATTCTGTAAATCG
***
89160303 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAATTTGGTAATTCTGTAAATCG
*
89160330 -GGAGTACTTTGGTAATT
1 AGG-GTAATTTGGTAATT
89160347 TTACAAGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGTAAATCG
Found at i:89160308 original size:54 final size:54
Alignment explanation
Indices: 89160169--89160292 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 54
89160159 TACCCTACAG
* *
89160169 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
89160223 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
89160277 GGGTATTTTGGTAATT
1 GGGTATTTTAGTAATT
89160293 CTGTAAATTG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:89160318 original size:81 final size:81
Alignment explanation
Indices: 89160166--89160319 Score: 175
Period size: 81 Copynumber: 1.9 Consensus size: 81
89160156 TTTTACCCTA
* * ***
89160166 CAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTT
1 CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
*
89160231 TAGTAATTTTACAAAC
66 CAGTAATTTTACAAAC
* * * ***
89160247 CAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATTTTGGTAATTCTGTAAATTGAGGGTAAA
1 CAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAA
*
89160311 ACGGTAATT
65 ACAGTAATT
89160320 CTGTAAATCG
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
81 58 0.98
82 1 0.02
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTTGGTAATTCTATAAACAAAGGGTAAAA
CAGTAATTTTACAAAC
Found at i:89164004 original size:27 final size:27
Alignment explanation
Indices: 89163972--89164024 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
89163962 GGGGCAAAAT
89163972 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
89163999 GGTAATTTTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
89164025 TAGTATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:89164034 original size:27 final size:27
Alignment explanation
Indices: 89163973--89164034 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
89163963 GGGCAAAATG
* *
89163973 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTTTACCCTACAAGGGTATTTCA
* *
89164000 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCTACAAGGGTATTTCA
*
89164027 GTATTTTT
1 GTAATTTT
89164035 GCAAACCATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (27 bp):
GTAATTTTACCCTACAAGGGTATTTCA
Found at i:89164048 original size:54 final size:51
Alignment explanation
Indices: 89163990--89164196 Score: 202
Period size: 54 Copynumber: 3.8 Consensus size: 51
89163980 TACCCTACAA
* * * *
89163990 GGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTATTTTTGCAAACCAT
1 GGGTATTTTGGTAATTTTA-CC-ACA-GGGTATTTTAGTAATTTTACAAACCAG
* *
89164044 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAA-TTT-T-ACCACAGGGTATTTTAGTAATTTTACAAACCAG
89164098 GGGTATTTTGGTAATTTTGTAAACCA-AGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAA-TTT-T--ACCACAGGGTATTTTAGTAATTTTACAAACCAG
* *
89164152 GGGTATTTTGGTGATTTTATAAACCA-AGGGTATTTTGGTAATTTT
1 GGGTATTTTGGT-AATTT-T--ACCACAGGGTATTTTAGTAATTTT
89164197 GTAAATTGAG
Statistics
Matches: 137, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
54 124 0.91
55 10 0.07
56 2 0.01
57 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (51 bp):
GGGTATTTTGGTAATTTTACCACAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:89164106 original size:81 final size:81
Alignment explanation
Indices: 89163988--89164197 Score: 269
Period size: 81 Copynumber: 2.6 Consensus size: 81
89163978 TCTACCCTAC
* ** * * *
89163988 AAGGGTATTTCGGTAATTTTACCCTA-CAGGGGTATTTTAGTATTTTTGCAAACCATGGGTATTT
1 AAGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTT
* *
89164052 TGGTAATTTTATAAACA
65 TAGTAATTTTACAAACA
* *
89164069 AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTT
*
89164134 AGTAATTTTACAAACC
66 AGTAATTTTACAAACA
* * * *
89164150 AGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTTTG
1 AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
89164198 TAAATTGAGG
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.02
81 110 0.98
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTT
AGTAATTTTACAAACA
Found at i:89164210 original size:27 final size:27
Alignment explanation
Indices: 89164017--89164201 Score: 235
Period size: 27 Copynumber: 6.9 Consensus size: 27
89164007 TACCCTACAG
* * ** *
89164017 GGGTATTTTAGTATTTTTGCAAACCAT
1 GGGTATTTTGGTAATTTTATAAACCAA
*
89164044 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
89164071 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
89164098 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
89164125 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
89164152 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
89164179 GGGTATTTTGGTAATTTTGTAAA
1 GGGTATTTTGGTAATTTTATAAA
89164202 TTGAGGGTAA
Statistics
Matches: 134, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:89164210 original size:54 final size:54
Alignment explanation
Indices: 89164017--89164196 Score: 297
Period size: 54 Copynumber: 3.3 Consensus size: 54
89164007 TACCCTACAG
* * * *
89164017 GGGTATTTTAGTATTTTTGCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
89164071 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
89164125 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
*
89164179 GGGTATTTTGGTAATTTT
1 GGGTATTTTAGTAATTTT
89164197 GTAAATTGAG
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 118 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:89167835 original size:94 final size:94
Alignment explanation
Indices: 89167674--89168049 Score: 653
Period size: 94 Copynumber: 4.0 Consensus size: 94
89167664 AATGTGACCG
* ** * *
89167674 TATATGCTATTTGAATTAAGTAAGTTAACATATTATAATGAGTTAACATTGACACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
89167739 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
89167768 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTAGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
89167833 GAATTAAATGTCACTTTGTGTACAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
89167862 TATATGCTATTTGAATTAAGTAAATTGCCTTACTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
89167927 GAATTAAATGACACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
89167956 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
89168021 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
89168050 GAATGTCGAT
Statistics
Matches: 268, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 268 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:89175458 original size:30 final size:30
Alignment explanation
Indices: 89175424--89175483 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
89175414 CTTTAATACG
*
89175424 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
89175454 AACTTTTGCATAATTACACTTTTGTCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
89175484 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:89176385 original size:3 final size:3
Alignment explanation
Indices: 89176377--89176439 Score: 117
Period size: 3 Copynumber: 21.0 Consensus size: 3
89176367 ATTTACTTAG
*
89176377 TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
89176425 TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
89176440 ATTTGATCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:89177704 original size:40 final size:37
Alignment explanation
Indices: 89177620--89177713 Score: 93
Period size: 40 Copynumber: 2.5 Consensus size: 37
89177610 AGATTTGATG
* *
89177620 AGGCATTGGTCGTCAC-TTTGCTTCGGCTTAGCCGATG
1 AGGCGTTGGTCGTCACTTTTGCTTCGGCTTA-CCGATA
*
89177657 AGACGTTGGTCGTCACTTATTTGCTTCGGACTATA-CGATA
1 AGGCGTTGGTCGTCAC-T-TTTGCTTCGG-CT-TACCGATA
*
89177697 AGGCGTTGGTCGCCACT
1 AGGCGTTGGTCGTCACT
89177714 CTGGCGTGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
37 14 0.30
39 1 0.02
40 28 0.60
41 2 0.04
42 2 0.04
ACGTcount: A:0.17, C:0.23, G:0.28, T:0.32
Consensus pattern (37 bp):
AGGCGTTGGTCGTCACTTTTGCTTCGGCTTACCGATA
Found at i:89180188 original size:29 final size:28
Alignment explanation
Indices: 89180154--89180256 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
89180144 TAATCGATCA
*
89180154 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
89180183 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
89180212 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
* *
89180241 TGCACACTTCGTGCCA
1 CGCACACTTAGTGCCA
89180257 ATCTCGTCAG
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 60 0.91
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:89188247 original size:29 final size:28
Alignment explanation
Indices: 89188213--89188315 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
89188203 TAATCGATCA
*
89188213 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
*
89188242 CGCACACATAGTGCCATATAATTTAAGCT
1 CGCACACTTAGTGCCAT-TAATTTAAGCT
89188271 CGCACACTTAGTGCCA-TACATTTCAAGCT
1 CGCACACTTAGTGCCATTA-ATTT-AAGCT
* *
89188300 TGCACACTTCGTGCCA
1 CGCACACTTAGTGCCA
89188316 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
27 2 0.03
28 4 0.06
29 60 0.91
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATTAATTTAAGCT
Found at i:89198446 original size:42 final size:42
Alignment explanation
Indices: 89198352--89198505 Score: 150
Period size: 43 Copynumber: 3.6 Consensus size: 42
89198342 CAATGCTAAC
* * * * *
89198352 GTCCCAGAC-GTGGTATTACATGTAATCAAATATTGATGCCGCT
1 GTCCCAGACAG-GGTCTTACACGAAATCAAATA-CGATGCCGAT
*
89198395 GTCCAAGACAGGGTCTTACACGAAATCAAATACGATGCCGAT
1 GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCGAT
* * * *
89198437 GTCCCAGACATGGTCTTACACGTAAATCATAAGT-CTATGCCAAC
1 GTCCCAGACAGGGTCTTACACG-AAATCA-AA-TACGATGCCGAT
*
89198481 ATCCCAGACAGGGTCTTACACGAAA
1 GTCCCAGACAGGGTCTTACACGAAA
89198506 ATACATATCG
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 28 0.30
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGCCGAT
Found at i:89198464 original size:43 final size:43
Alignment explanation
Indices: 89198352--89198507 Score: 149
Period size: 44 Copynumber: 3.6 Consensus size: 43
89198342 CAATGCTAAC
* * * *
89198352 GTCCCAGAC-GTGGTATTACATGT-AATCAAATATTGATGCCGCT
1 GTCCCAGACAG-GGTCTTACACGTAAATCAAATA-CGATGCCGAT
*
89198395 GTCCAAGACAGGGTCTTACACG-AAATCAAATACGATGCCGAT
1 GTCCCAGACAGGGTCTTACACGTAAATCAAATACGATGCCGAT
* * * *
89198437 GTCCCAGACATGGTCTTACACGTAAATCATAAGT-CTATGCCAAC
1 GTCCCAGACAGGGTCTTACACGTAAATCA-AA-TACGATGCCGAT
* *
89198481 ATCCCAGACAGGGTCTTACACGAAAAT
1 GTCCCAGACAGGGTCTTACACGTAAAT
89198508 ACATATCGGA
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 28 0.29
43 32 0.34
44 34 0.36
45 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACGTAAATCAAATACGATGCCGAT
Found at i:89202845 original size:29 final size:29
Alignment explanation
Indices: 89202813--89202885 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
89202803 CTTCGAGCTC
*
89202813 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
89202842 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
89202871 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
89202886 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:89210872 original size:3 final size:3
Alignment explanation
Indices: 89210866--89210914 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
89210856 ACAAAGAAGG
*
89210866 ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
89210914 A
1 A
89210915 ACATAAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:89210997 original size:3 final size:3
Alignment explanation
Indices: 89210977--89211060 Score: 59
Period size: 3 Copynumber: 28.0 Consensus size: 3
89210967 AGAACAATGG
* *
89210977 TAA TAA AAA TAA TAAA TAA TAA TAAA TAA TAA TAA TAA TTA -AA TAAA
1 TAA TAA TAA TAA T-AA TAA TAA T-AA TAA TAA TAA TAA TAA TAA T-AA
* * *
89211024 TAA -AA TAA AAA TAA -AA GTAA GAA TAA AAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
89211061 ATAAATAAAG
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
2 7 0.11
3 45 0.71
4 11 0.17
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (3 bp):
TAA
Found at i:89211000 original size:13 final size:13
Alignment explanation
Indices: 89210978--89211037 Score: 63
Period size: 13 Copynumber: 4.6 Consensus size: 13
89210968 GAACAATGGT
*
89210978 AATAAAAATAATA
1 AATAATAATAATA
89210991 AATAATAATAA-A
1 AATAATAATAATA
89211003 TAATAATAATAATTA
1 -AATAATAATAA-TA
89211018 AATAAATAA-AATA
1 AAT-AATAATAATA
89211031 AA-AATAA
1 AATAATAA
89211038 AAGTAAGAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
11 5 0.12
12 1 0.02
13 25 0.60
14 5 0.12
15 6 0.14
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AATAATAATAATA
Found at i:89211005 original size:23 final size:23
Alignment explanation
Indices: 89210978--89211078 Score: 86
Period size: 23 Copynumber: 4.5 Consensus size: 23
89210968 GAACAATGGT
89210978 AATAAAAATAATAAATAATAATA
1 AATAAAAATAATAAATAATAATA
* *
89211001 AATAATAATAATAATTAAATAAATAA
1 AATAAAAATAATAAAT-AAT-AAT-A
* *
89211027 AATAAAAATAA-AAGTAAGAATA
1 AATAAAAATAATAAATAATAATA
*
89211049 AA-AATAA-AATAAAT-A-AATA
1 AATAAAAATAATAAATAATAATA
*
89211068 AAGAAAAATAA
1 AATAAAAATAA
89211079 AGAAAAAGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
19 6 0.09
20 7 0.11
21 9 0.14
22 3 0.05
23 17 0.27
24 5 0.08
25 6 0.09
26 11 0.17
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (23 bp):
AATAAAAATAATAAATAATAATA
Found at i:89211075 original size:18 final size:18
Alignment explanation
Indices: 89210983--89211079 Score: 72
Period size: 17 Copynumber: 5.2 Consensus size: 18
89210973 ATGGTAATAA
* *
89210983 AAAT-AATAAATAATAAT
1 AAATAAATAAAAAAAAAT
* * *
89211000 AAAT-AATAATAATAATT
1 AAATAAATAAAAAAAAAT
89211017 AAATAAATAAAATAAAAAT
1 AAATAAATAAAA-AAAAAT
89211036 AAAAGTAAGAATAAAAATAAAAT
1 -AAA-T-A-AATAAAAA-AAAAT
*
89211059 AAATAAATAAAGAAAAAT
1 AAATAAATAAAAAAAAAT
89211077 AAA
1 AAA
89211080 GAAAAAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 13
0.74 0.10 0.15
Matches are distributed among these distances:
17 16 0.25
18 14 0.22
19 11 0.17
20 4 0.06
21 2 0.03
22 5 0.08
23 12 0.19
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AAATAAATAAAAAAAAAT
Found at i:89211088 original size:42 final size:44
Alignment explanation
Indices: 89211001--89211090 Score: 114
Period size: 42 Copynumber: 2.1 Consensus size: 44
89210991 AATAATAATA
* * **
89211001 AATAATAATAATAATTAAATAAATAAAATAAAAATAAAAGTAAG
1 AATAAAAATAATAATTAAATAAATAAAAGAAAAATAAAAAAAAG
89211045 AATAAAAATAA-AA-TAAATAAAT-AAAGAAAAATAAAGAAAAAG
1 AATAAAAATAATAATTAAATAAATAAAAGAAAAATAAA-AAAAAG
89211087 AATA
1 AATA
89211091 GGGAAAACGA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 12 0.29
42 17 0.41
43 2 0.05
44 10 0.24
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (44 bp):
AATAAAAATAATAATTAAATAAATAAAAGAAAAATAAAAAAAAG
Found at i:89215706 original size:30 final size:30
Alignment explanation
Indices: 89215661--89215717 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 30
89215651 ATAAACCAAA
89215661 GCCTAATTAAAAATT-AAAACCCAAAAATG
1 GCCTAATTAAAAATTAAAAACCCAAAAATG
*
89215690 GCCTTATTATAAAATTAAAAACCCAAAA
1 GCCTAATTA-AAAATTAAAAACCCAAAA
89215718 GTGAAACTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 8 0.32
30 6 0.24
31 11 0.44
ACGTcount: A:0.54, C:0.18, G:0.05, T:0.23
Consensus pattern (30 bp):
GCCTAATTAAAAATTAAAAACCCAAAAATG
Found at i:89215929 original size:28 final size:28
Alignment explanation
Indices: 89215894--89215995 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 28
89215884 TAAAAAGTGC
89215894 ATACAGTAACAGTCTGGGCCTGAGCCCT
1 ATACAGTAACAGTCTGGGCCTGAGCCCT
* * *
89215922 ATTCAGTATCAGTACAGTCTGGACCTTAGCCCT
1 ATACAG--T-A--ACAGTCTGGGCCTGAGCCCT
* * * *
89215955 ATACAGTAACAGTGTGGGCTTAAGCCCA
1 ATACAGTAACAGTCTGGGCCTGAGCCCT
*
89215983 ATACAGTATCAGT
1 ATACAGTAACAGT
89215996 ACAGTGTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
28 32 0.54
30 2 0.03
31 2 0.03
33 23 0.39
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (28 bp):
ATACAGTAACAGTCTGGGCCTGAGCCCT
Found at i:89215940 original size:33 final size:34
Alignment explanation
Indices: 89215896--89215967 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
89215886 AAAAGTGCAT
* *
89215896 ACAGTAACAGTCTGGGCCTGAGCCCTATTCAGTA
1 ACAGTAACAGTCTGGACCTGAGCCCTATACAGTA
* *
89215930 TCAGT-ACAGTCTGGACCTTAGCCCTATACAGTA
1 ACAGTAACAGTCTGGACCTGAGCCCTATACAGTA
89215963 ACAGT
1 ACAGT
89215968 GTGGGCTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 29 0.88
34 4 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (34 bp):
ACAGTAACAGTCTGGACCTGAGCCCTATACAGTA
Found at i:89223560 original size:62 final size:63
Alignment explanation
Indices: 89223458--89223581 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 63
89223448 AGCTCACATG
*
89223458 ACCTCAAAAACATAAAAATTATATAAAAAAAAGGACTAAATTGCACTAACCAATTGTTGGCTA
1 ACCTAAAAAACATAAAAATTATATAAAAAAAAGGACTAAATTGCACTAACCAATTGTTGGCTA
89223521 ACCTAAAAAACATAAAAATTATAT-AAAAAAAGGACTAAATTGCACTAACCAATTGTTGGCT
1 ACCTAAAAAACATAAAAATTATATAAAAAAAAGGACTAAATTGCACTAACCAATTGTTGGCT
89223582 GAAAGTTCAA
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 37 0.62
63 23 0.38
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (63 bp):
ACCTAAAAAACATAAAAATTATATAAAAAAAAGGACTAAATTGCACTAACCAATTGTTGGCTA
Found at i:89223743 original size:16 final size:16
Alignment explanation
Indices: 89223717--89223750 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
89223707 ATAATAGTTT
89223717 AATTAATTTAAACATTA
1 AATTAATTTAAAC-TTA
89223734 AATTAA-TTAAACTTA
1 AATTAATTTAAACTTA
89223749 AA
1 AA
89223751 GCCTTCAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 6 0.35
17 6 0.35
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTAATTTAAACTTA
Found at i:89229239 original size:22 final size:22
Alignment explanation
Indices: 89229211--89229255 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
89229201 TGTGATTATG
89229211 TTATTTTAAATTGAGTTGATTA
1 TTATTTTAAATTGAGTTGATTA
89229233 TTATTTTAAATTGAGTTGATTA
1 TTATTTTAAATTGAGTTGATTA
89229255 T
1 T
89229256 GTCATTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (22 bp):
TTATTTTAAATTGAGTTGATTA
Found at i:89237044 original size:56 final size:56
Alignment explanation
Indices: 89236957--89237120 Score: 238
Period size: 56 Copynumber: 2.9 Consensus size: 56
89236947 ACCATGGCAT
* *
89236957 CGATATATGTGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCAAATTTAATACGTTGGCATCGATATGTGATTC
* *
89237013 TGATATATGTGTGGGAGTAAGACCAAATTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCAAATTTAATACGTTGGCATCGATATGTGATTC
* * ** * *
89237069 CGATAAATGTGTGCAAGTAAGACCATGTCTAGTACGTTGGCATCGATATGTG
1 CGATATATGTGTGCGAGTAAGACCAAATTTAATACGTTGGCATCGATATGTG
89237121 GTTACATGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 96 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCAAATTTAATACGTTGGCATCGATATGTGATTC
Found at i:89239975 original size:40 final size:40
Alignment explanation
Indices: 89239848--89239977 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
89239838 ATGCTGGAAA
* *
89239848 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
89239888 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
89239928 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
89239968 TTATATCCGG
1 TTATATCCGG
89239978 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:89245479 original size:40 final size:40
Alignment explanation
Indices: 89245352--89245481 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
89245342 ATGCTGGAAA
* *
89245352 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
89245392 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
89245432 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
89245472 TTATATCCGG
1 TTATATCCGG
89245482 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:89254640 original size:19 final size:19
Alignment explanation
Indices: 89254599--89254640 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
89254589 GAATTGAACT
* *
89254599 TTGAAATATTTGTAATTAT
1 TTGAAATATATGTAATTAA
89254618 TTGAAATATATGT-ATATAA
1 TTGAAATATATGTAAT-TAA
89254637 TTGA
1 TTGA
89254641 TTAATTGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (19 bp):
TTGAAATATATGTAATTAA
Found at i:89254853 original size:50 final size:45
Alignment explanation
Indices: 89254796--89254903 Score: 119
Period size: 47 Copynumber: 2.3 Consensus size: 45
89254786 TCACCGCAGA
* *
89254796 TCATATGAGCTTATTGATATATTAGCTCGTAAGAGCTTACTATTCTCAGC
1 TCATATGAGCTTACT-A-AT-TTAGCTCGTAAGAGCTTACCA-T-TCAGC
* *
89254846 TCATATGAACTTACTAATTTAGCTCGTAAGAGTTTACCATTCAGC
1 TCATATGAGCTTACTAATTTAGCTCGTAAGAGCTTACCATTCAGC
89254891 TCA-ATAGAGCTTA
1 TCATAT-GAGCTTA
89254904 GTGTCCATCA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
44 2 0.04
45 14 0.27
46 1 0.02
47 19 0.37
48 2 0.04
49 1 0.02
50 13 0.25
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (45 bp):
TCATATGAGCTTACTAATTTAGCTCGTAAGAGCTTACCATTCAGC
Found at i:89254882 original size:23 final size:22
Alignment explanation
Indices: 89254817--89254892 Score: 71
Period size: 24 Copynumber: 3.3 Consensus size: 22
89254807 TATTGATATA
89254817 TTAGCTCGTAAGAGCTTACTAT
1 TTAGCTCGTAAGAGCTTACTAT
* * *
89254839 TCTCAGCTCATATGAACTTACTAAT
1 T-T-AGCTCGTAAGAGCTTACT-AT
* *
89254864 TTAGCTCGTAAGAGTTTACCAT
1 TTAGCTCGTAAGAGCTTACTAT
*
89254886 TCAGCTC
1 TTAGCTC
89254893 AATAGAGCTT
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
22 9 0.21
23 14 0.33
24 16 0.38
25 3 0.07
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (22 bp):
TTAGCTCGTAAGAGCTTACTAT
Found at i:89254925 original size:26 final size:25
Alignment explanation
Indices: 89254886--89254946 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
89254876 AGTTTACCAT
* *
89254886 TCAGCTCAATAGAGCTTAGTGTCCA
1 TCAGCTCAAAAGAGCTTACTGTCCA
*
89254911 TCAGCTCAAGAAGAGCTTACTGTTCA
1 TCAGCTCAA-AAGAGCTTACTGTCCA
89254937 T-AGCTCAAAA
1 TCAGCTCAAAA
89254947 AAGCGAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 2 0.06
25 16 0.50
26 14 0.44
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (25 bp):
TCAGCTCAAAAGAGCTTACTGTCCA
Found at i:89261402 original size:28 final size:28
Alignment explanation
Indices: 89261370--89261438 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
89261360 GCGTAGATCA
89261370 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
89261398 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
89261426 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
89261439 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 3 0.08
27 8 0.21
28 28 0.72
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:89267725 original size:40 final size:42
Alignment explanation
Indices: 89267660--89267749 Score: 144
Period size: 42 Copynumber: 2.1 Consensus size: 42
89267650 CGGCTGAACT
*
89267660 ACACGCCCATGGGGTAGACCGTGTGTCACACATGACCTAGAC
1 ACACGCCCATGGGGTAGACCGTGTGTCACACAAGACCTAGAC
* **
89267702 ACACGCCCATGGGGTAGACTGTGTGTCACACAAGGGCTAGAC
1 ACACGCCCATGGGGTAGACCGTGTGTCACACAAGACCTAGAC
89267744 ACACGC
1 ACACGC
89267750 ACGTGTGTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.27, C:0.30, G:0.28, T:0.16
Consensus pattern (42 bp):
ACACGCCCATGGGGTAGACCGTGTGTCACACAAGACCTAGAC
Found at i:89272172 original size:47 final size:48
Alignment explanation
Indices: 89271917--89272190 Score: 178
Period size: 47 Copynumber: 5.8 Consensus size: 48
89271907 CACGGGACAA
* *
89271917 GTGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATAT
1 GTGGCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTCTCATA-AT
* * * * * * * *
89271966 CCAT-GCTGACGCCATGTCCCAGACCTAGTCTTACACTAACACATC-TCA-
1 --GTGGCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTC-TCATAAT
* * * * *
89272014 -TAGCCAATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCACT
1 GTGGCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTCTCAT-AAT
* * *
89272060 GGGGCCGATG-CATGTCCCAGACA-CATCTTACACTAGCACTCACCTAAAT
1 GTGGCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTCTCA--T-AAT
* * * *
89272109 GT---TGTTGCCATATCCCAGACATGGTCTTACACTAGCTCTCATAAT
1 GTGGCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTCTCATAAT
*
89272154 GTGGTCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GTGGCCGATGCCATGTCCCAGACATCGTCTTACACTAGC
89272191 ATAAAATAAT
Statistics
Matches: 171, Mismatches: 39, Indels: 31
0.71 0.16 0.13
Matches are distributed among these distances:
43 2 0.01
44 12 0.07
45 18 0.11
46 21 0.12
47 59 0.35
48 19 0.11
49 5 0.03
50 32 0.19
51 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
GTGGCCGATGCCATGTCCCAGACATCGTCTTACACTAGCTCTCATAAT
Found at i:89275923 original size:46 final size:46
Alignment explanation
Indices: 89275856--89276076 Score: 263
Period size: 46 Copynumber: 4.8 Consensus size: 46
89275846 GTAACCCGCA
* * * *
89275856 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
* * *
89275902 CATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATC
* *
89275952 TC-TCA---AACTCGGACTCAACTCAACGAGTTCGAACATTCGCATC
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
*
89275995 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
89276041 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
89276077 TGCCCAAATA
Statistics
Matches: 152, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
42 3 0.02
43 7 0.05
44 1 0.01
46 106 0.70
47 25 0.16
49 1 0.01
50 6 0.04
51 3 0.02
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
Found at i:89279382 original size:10 final size:10
Alignment explanation
Indices: 89279367--89279396 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
89279357 GATAAAAGGG
89279367 AAAATAAAAA
1 AAAATAAAAA
*
89279377 AAAATAACAA
1 AAAATAAAAA
89279387 AAAATAAAAA
1 AAAATAAAAA
89279397 GTCTTTAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.87, C:0.03, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:89284624 original size:13 final size:13
Alignment explanation
Indices: 89284606--89284632 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89284596 GCTTGATAGG
89284606 GACACGCCCGTGT
1 GACACGCCCGTGT
89284619 GACACGCCCGTGT
1 GACACGCCCGTGT
89284632 G
1 G
89284633 CAATTGCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:89291442 original size:87 final size:87
Alignment explanation
Indices: 89291296--89291471 Score: 325
Period size: 87 Copynumber: 2.0 Consensus size: 87
89291286 CATGGGGTGA
* *
89291296 TCCGTGTGTCACACACGGCCTAGACACAAGCCCGTGTGTCTACCCATGTGGACCATGTTAGGCTA
1 TCCGTGTGTCACACACGGCCTAAACACAAACCCGTGTGTCTACCCATGTGGACCATGTTAGGCTA
89291361 TTTTCCAAGCCTTTGGTCACCC
66 TTTTCCAAGCCTTTGGTCACCC
*
89291383 TCCGTGTGTCACACACGGCCTAAACACAAACCCGTGTGTCTACCCATGTGGACCGTGTTAGGCTA
1 TCCGTGTGTCACACACGGCCTAAACACAAACCCGTGTGTCTACCCATGTGGACCATGTTAGGCTA
89291448 TTTTCCAAGCCTTTGGTCACCC
66 TTTTCCAAGCCTTTGGTCACCC
89291470 TC
1 TC
89291472 TAACATCCAT
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.20, C:0.32, G:0.21, T:0.27
Consensus pattern (87 bp):
TCCGTGTGTCACACACGGCCTAAACACAAACCCGTGTGTCTACCCATGTGGACCATGTTAGGCTA
TTTTCCAAGCCTTTGGTCACCC
Found at i:89295723 original size:43 final size:42
Alignment explanation
Indices: 89295666--89295774 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
89295656 CATGCCAACG
89295666 TCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATGC-CACTA
1 TCCCAGACAG-GGTCTTACATGTAATCAAATA-CGATGCTCA-TA
* * * * *
89295709 TCCTAGACAGGGTCTTACACGAAATCAAATACGATGCTGATG
1 TCCCAGACAGGGTCTTACATGTAATCAAATACGATGCTCATA
*
89295751 TCCCAGACATGGTCTTACATGTAA
1 TCCCAGACAGGGTCTTACATGTAA
89295775 ATCTCGAATC
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 27 0.49
43 27 0.49
44 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACATGTAATCAAATACGATGCTCATA
Found at i:89295777 original size:43 final size:44
Alignment explanation
Indices: 89295657--89295813 Score: 137
Period size: 43 Copynumber: 3.6 Consensus size: 44
89295647 ATATCGTACC
*
89295657 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* * * *
89295700 ATGCCACTATCCTAGACAGGGTCTTACACG-AAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
* **
89295742 ATGCTGA-TGTCCCAGACATGGTCTTACATGTAAATCTCGA-ATCG
1 ATGC-CACTGTCCCAGACATGGTCTTACATGTAAATC-AAATATCG
* * * *
89295786 ATGCCAATGTCCTAGACGTGGGCTTACA
1 ATGCCACTGTCCCAGACATGGTCTTACA
89295814 CAAAATCACA
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 27 0.30
43 39 0.43
44 25 0.27
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGTAAATCAAATATCG
Found at i:89295813 original size:86 final size:85
Alignment explanation
Indices: 89295665--89295821 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
89295655 CCATGCCAAC
* * * *
89295665 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATCCTAGACAGGGTCTTACACG
1 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCTAGACAGGGGCTTACACA
89295730 AAATCAAATACGATGCTGAT
66 AAATCAAATACGATGCTGAT
** *
89295750 GTCCCAGACATGGTCTTACATGTAAATCTCGA-ATCGATGCCAATGTCCTAGAC-GTGGGCTTAC
1 GTCCCAGACATGGTCTTACATGT-AATC-AAATATCGATGCCAATATCCTAGACAG-GGGCTTAC
89295813 ACAAAATCA
63 ACAAAATCA
89295822 CATATCGAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 23 0.37
86 38 0.61
87 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCTAGACAGGGGCTTACACA
AAATCAAATACGATGCTGAT
Found at i:89302081 original size:27 final size:26
Alignment explanation
Indices: 89302041--89302128 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 26
89302031 AGGAAGCGTC
89302041 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
89302068 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
*
89302095 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTATGCCAC-ATTATCTG-AT
89302123 CTGGTG
1 CTGGTG
89302129 ACTCCATCAT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.04
27 43 0.80
28 9 0.17
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:89303250 original size:50 final size:50
Alignment explanation
Indices: 89303131--89303567 Score: 514
Period size: 50 Copynumber: 8.9 Consensus size: 50
89303121 GTAAGGTGTC
* * * * * * ** *
89303131 GATGCCATGTCTCGGACATGGTCTTGCACTGGCTCACACATC-AAAGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
* * *
89303179 GATGCCATGTCCCAGACATGGTCTTACACT-GACTCTCGTATATCGAGGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATCTCGAGGCT
* * * * * *
89303229 GATGTCATGTCCCAAACATGGTCTTACACT-G-ACACATA--TC-AAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
* * *
89303274 GATGTCAAGTCCCAGACAAGGTCTTACACTAGCTCTCATATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
* *
89303324 GATGCCATGTCCTAGACATGGTCTTACTCTAGCTCTCATATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
*
89303374 GATGACATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
** * *
89303424 GATGCCATGTCATAGACATGGTCTTACGCTAGCTCTTATATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
*
89303474 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCTCGAGG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
* *
89303523 CGATGCCATGTCCCAGATATGGTCATACACTAGCTCTCATATCTC
1 -GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
89303568 CAGCATCATG
Statistics
Matches: 333, Mismatches: 47, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
45 29 0.09
46 3 0.01
47 6 0.02
48 37 0.11
49 5 0.02
50 253 0.76
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCGAGGCT
Found at i:89309624 original size:42 final size:41
Alignment explanation
Indices: 89309567--89309679 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 41
89309557 AATGCCACTG
* * * * **
89309567 TCCCAGACAGGGTCTTACACGAAATCAAATACGATGTCGATG
1 TCCCAAACATGGTCTTACACGAAATCAAAT-CGATGCCAACA
*
89309609 TCCCAAAGATGGTCTTACACGTAAATCTCAAATCGATGCCAACA
1 TCCCAAACATGGTCTTACACG-AAA--TCAAATCGATGCCAACA
89309653 TCCCAAACATGGTCTTACACGAAATCA
1 TCCCAAACATGGTCTTACACGAAATCA
89309680 CACATCGGAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.05
42 18 0.30
43 6 0.10
44 27 0.45
45 6 0.10
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (41 bp):
TCCCAAACATGGTCTTACACGAAATCAAATCGATGCCAACA
Found at i:89314002 original size:27 final size:26
Alignment explanation
Indices: 89313946--89314002 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
89313936 CAACCTTAAC
* * *
89313946 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
* *
89313972 CCTAGGTGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
89313999 CCTA
1 CCTA
89314003 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:89317773 original size:13 final size:13
Alignment explanation
Indices: 89317755--89317779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89317745 TAATTTATAT
89317755 GTGTGAAAATTTC
1 GTGTGAAAATTTC
89317768 GTGTGAAAATTT
1 GTGTGAAAATTT
89317780 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:89326400 original size:21 final size:20
Alignment explanation
Indices: 89326371--89326409 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
89326361 TCCTCTAACA
* *
89326371 GGGCACACGTCCGTGTGGAT
1 GGGCACACGCCCATGTGGAT
89326391 GGGCAACACGCCCATGTGG
1 GGGC-ACACGCCCATGTGG
89326410 TCATTACAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.18, C:0.28, G:0.38, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCATGTGGAT
Found at i:89328195 original size:49 final size:48
Alignment explanation
Indices: 89327931--89328252 Score: 212
Period size: 47 Copynumber: 6.8 Consensus size: 48
89327921 TGGGTTATTG
* * *
89327931 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA--GA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA
* * *
89327977 TAAGTGCTAGTGTAAGA-CATGTCTGGG-TAT-GCATCAGCCTCTAGAT-G-
1 T--GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC--GATGGA
* * * *
89328024 TAAGCCAGTGTAAGA-CATGTCT-GG-CATAGGCATTGG-CTACCA--GA
1 TGAGCTAGTGTAAGACCATGTCTGGGACAT-GGCATCGGCCT-CGATGGA
* * * *
89328068 TGTG-TCAATGTAAGACCATGTCTGGGACATGGCATCAGCAC-AGATATGCGA
1 TGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCG--ATG-GA
* *
89328119 -GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA--TGGA
* * * * *
89328168 T-AGTTAGTGTAAGACTATGTCTTGGACATGGCATC-GACTTGATGGA
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA
89328214 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
89328253 ATTTTACCCT
Statistics
Matches: 211, Mismatches: 38, Indels: 52
0.70 0.13 0.17
Matches are distributed among these distances:
43 1 0.00
44 15 0.07
45 34 0.16
46 21 0.10
47 47 0.22
48 23 0.11
49 33 0.16
50 34 0.16
51 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGGA
Found at i:89328243 original size:96 final size:98
Alignment explanation
Indices: 89328076--89328252 Score: 263
Period size: 96 Copynumber: 1.8 Consensus size: 98
89328066 GATGTGTCAA
89328076 TGTAAGACCATGTCTGGGACATGGCATCAGCACAGATATGCGAGAGCTAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCAGCACAGA-ATGCGAGAGCTAGTGTAAGACCATGTCT
*
89328141 GGGACATGGCGTCGGCCTCGATTTTGATAGTTAG
65 GGGACATGGCATCGGCCTCGATTTTGATAGTTAG
* * *
89328175 TGTAAGACTATGTCTTGGACATGGCATC-G-ACTTG-ATG-GATGAGCTAGTGTAAGACCATGTC
1 TGTAAGACCATGTCTGGGACATGGCATCAGCAC-AGAATGCGA-GAGCTAGTGTAAGACCATGTC
89328236 TGGGACATGGCATCGGC
64 TGGGACATGGCATCGGC
89328253 ATTTTACCCT
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
95 2 0.03
96 40 0.56
97 2 0.03
98 2 0.03
99 26 0.36
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (98 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCACAGAATGCGAGAGCTAGTGTAAGACCATGTCTG
GGACATGGCATCGGCCTCGATTTTGATAGTTAG
Found at i:89336124 original size:27 final size:26
Alignment explanation
Indices: 89336089--89336200 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
89336079 AGCATGGCTG
* *
89336089 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
89336115 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
89336143 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
89336170 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
89336197 CCAG
1 CCAG
89336201 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:89336181 original size:54 final size:54
Alignment explanation
Indices: 89336089--89336200 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
89336079 AGCATGGCTG
* *
89336089 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
89336143 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
89336197 CCAG
1 CCAG
89336201 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:89337613 original size:24 final size:24
Alignment explanation
Indices: 89337586--89337656 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
89337576 CTAGATTTCC
**
89337586 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
89337610 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
89337634 TCCCTTATCAACTCTTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
89337657 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:89343896 original size:21 final size:21
Alignment explanation
Indices: 89343872--89343913 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
89343862 ATGCGTATTG
*
89343872 AGTTA-TAATATGTAATGCATT
1 AGTTAGTAAAATGT-ATGCATT
89343893 AGTTAGTAAAATGTATGCATT
1 AGTTAGTAAAATGTATGCATT
89343914 TATATGTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (21 bp):
AGTTAGTAAAATGTATGCATT
Found at i:89344684 original size:39 final size:40
Alignment explanation
Indices: 89344587--89344763 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
89344577 TGGATGATAA
* * *
89344587 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
89344627 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
89344667 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
89344706 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
89344746 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89344764 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 55 0.44
40 69 0.56
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89344721 original size:79 final size:79
Alignment explanation
Indices: 89344590--89344763 Score: 235
Period size: 79 Copynumber: 2.2 Consensus size: 79
89344580 ATGATAACCG
* * *
89344590 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCGAGC
89344655 GAGTTA-CTATATCC
66 GAG-TAGCTATATCC
* * * *
89344669 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTATGTCCCGAAGGTATTCGAG
1 GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTCGAG
89344733 CGAGTAGCTATATCC
65 CGAGTAGCTATATCC
* *
89344748 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
89344764 TACTTGGCTT
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 3 0.04
79 81 0.96
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCGAGC
GAGTAGCTATATCC
Found at i:89351970 original size:2 final size:2
Alignment explanation
Indices: 89351963--89351994 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
89351953 ACTCTTGTAC
89351963 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89351995 TGCACATGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:89352863 original size:40 final size:40
Alignment explanation
Indices: 89352808--89353024 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
89352798 TGGATGATAA
* * *
89352808 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
89352848 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
89352888 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
89352928 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
89352967 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
89353007 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89353025 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 10, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
39 55 0.34
40 109 0.66
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89352959 original size:79 final size:79
Alignment explanation
Indices: 89352808--89353024 Score: 312
Period size: 79 Copynumber: 2.7 Consensus size: 79
89352798 TGGATGATAA
* * *
89352808 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTA-TATCC-GGCTAAGTCCCGAAGGCATTT
89352872 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAT
*
89352888 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGT
89352953 GCGAGTTACTATAT
66 GCGAGTTACTATAT
* * * * *
89352967 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATATCCGGCTAAGTCCCGAAGG
89353025 TACTTGGCTT
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
78 2 0.02
79 87 0.69
80 37 0.29
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:89354746 original size:27 final size:26
Alignment explanation
Indices: 89354711--89354822 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
89354701 AGCATGGCTG
* *
89354711 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
89354737 CCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
*
89354765 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
89354792 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
89354819 CCAG
1 CCAG
89354823 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:89354803 original size:54 final size:54
Alignment explanation
Indices: 89354711--89354822 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
89354701 AGCATGGCTG
* *
89354711 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCA
* *
89354765 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCA
89354819 CCAG
1 CCAG
89354823 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCA
Found at i:89356269 original size:24 final size:24
Alignment explanation
Indices: 89356242--89356288 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
89356232 CCTAGATTTC
**
89356242 TCCCTTATCTGCTCCAAAATCCTA
1 TCCCTTATCAACTCCAAAATCCTA
*
89356266 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCAAAATCCT
89356289 CTCCTGACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.38, G:0.02, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCAAAATCCTA
Found at i:89359314 original size:48 final size:47
Alignment explanation
Indices: 89359242--89359461 Score: 214
Period size: 46 Copynumber: 4.7 Consensus size: 47
89359232 ACAACAAGCT
* *
89359242 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCC
* ** * *
89359291 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCC
** * *
89359337 GATGCATGTCGTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCGAGGCC
* * * * *
89359385 GATGCATGTCCTAAACATGTCTTACACTGGCTCTCATA-CT--ATGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TTATATCTCGA-GGCC
*
89359431 GATGCATGTCCCAAACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
89359462 ACACAAATCA
Statistics
Matches: 145, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 68 0.47
47 3 0.02
48 68 0.47
49 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTTATATCTCGAGGCC
Found at i:89359376 original size:94 final size:94
Alignment explanation
Indices: 89359242--89359461 Score: 282
Period size: 94 Copynumber: 2.3 Consensus size: 94
89359232 ACAACAAGCT
* ** *
89359242 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGAGGCCGATGCATGTCCCAGAC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAAAC
*
89359307 ATGTCTTACACTAGCTCTCGT-CTCAAT-GCC
65 ATGTCTTACACTAGCTCTCATACT--ATGGCC
** * * *
89359337 GATGCATGTCGTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCGATGCATGTCCTAAACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAAACA
* *
89359402 TGTCTTACACTGGCTCTCATACTATGGCT
66 TGTCTTACACTAGCTCTCATACTATGGCC
*
89359431 GATGCATGTCCCAAACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
89359462 ACACAAATCA
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
93 2 0.02
94 99 0.93
95 6 0.06
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCGATGCATGTCCCAAACA
TGTCTTACACTAGCTCTCATACTATGGCC
Found at i:89364050 original size:43 final size:44
Alignment explanation
Indices: 89363915--89364072 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 44
89363905 GTGATTTCGA
* ** * * * *
89363915 GTAAGACCACGTCTGGGACATTGGCATCAATTTTTGATTTACGT
1 GTAAGACCACGTCTGGGACAGTGGCATTGATATGTGAGTTACAT
* * * *
89363959 GTAAGACCATGTCCGAGACA-TCGGCATTG-TATATGAGTT-CAT
1 GTAAGACCACGTCTGGGACAGT-GGCATTGATATGTGAGTTACAT
89364001 GTAAGACC-CTGTCTGGGACAGTGGCATTGATATGTGA-TTACAT
1 GTAAGACCAC-GTCTGGGACAGTGGCATTGATATGTGAGTTACAT
89364044 GTAAGACCACGTCTGGGAC-GTTGGCATTG
1 GTAAGACCACGTCTGGGACAG-TGGCATTG
89364073 TACAAGCCTT
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
42 28 0.30
43 43 0.46
44 23 0.24
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (44 bp):
GTAAGACCACGTCTGGGACAGTGGCATTGATATGTGAGTTACAT
Found at i:89372090 original size:39 final size:39
Alignment explanation
Indices: 89372009--89372160 Score: 227
Period size: 39 Copynumber: 3.9 Consensus size: 39
89371999 TATGGTAACC
* * *
89372009 CGCACAAATT-CCTTCGGGACTTAACCCGGATATCACAACT
1 CGCAC-AATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
89372049 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
89372088 CGCACAATTGCCTTCGGGCTTAGCCCAGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCC-GGATATCATAGCT
89372127 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
89372161 CTCGAACATT
Statistics
Matches: 105, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
38 2 0.02
39 88 0.84
40 15 0.14
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:89384493 original size:41 final size:41
Alignment explanation
Indices: 89384448--89384587 Score: 111
Period size: 41 Copynumber: 3.4 Consensus size: 41
89384438 AGCAGACTTT
* *
89384448 GTGCCAATGAATTATATTAGGCTTTAAGCCTAGTAAGCTTC
1 GTGCCAATGAATTATATTAGGCCTTGAGCCTAGTAAGCTTC
** * * * * * *
89384489 GTGCCGGTGAATTGTATCAAGCCTTGAGCCTAGCAAGTTTT
1 GTGCCAATGAATTATATTAGGCCTTGAGCCTAGTAAGCTTC
* * * * *
89384530 GTGCCAGTGTATT-TGTTTCAGGCCTTGAGCCTAGTAGGCTAC
1 GTGCCAATGAATTAT-ATT-AGGCCTTGAGCCTAGTAAGCTTC
*
89384572 GTGCCGATGAATTATA
1 GTGCCAATGAATTATA
89384588 AGGTAAAATT
Statistics
Matches: 72, Mismatches: 24, Indels: 5
0.71 0.24 0.05
Matches are distributed among these distances:
40 1 0.01
41 43 0.60
42 27 0.38
43 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.33
Consensus pattern (41 bp):
GTGCCAATGAATTATATTAGGCCTTGAGCCTAGTAAGCTTC
Found at i:89384576 original size:42 final size:41
Alignment explanation
Indices: 89384474--89384584 Score: 116
Period size: 42 Copynumber: 2.7 Consensus size: 41
89384464 TTAGGCTTTA
*
89384474 AGCCTAGTAAGCTTCGTGCCGGTGAATTGTATCAAGCCTTG
1 AGCCTAGTAAGCTTCGTGCCAGTGAATTGTATCAAGCCTTG
* * * * * *
89384515 AGCCTAGCAAGTTTTGTGCCAGTGTATTTGTTTCAGGCCTTG
1 AGCCTAGTAAGCTTCGTGCCAGTG-AATTGTATCAAGCCTTG
* *
89384557 AGCCTAGTAGGCTACGTGCC-GATGAATT
1 AGCCTAGTAAGCTTCGTGCCAG-TGAATT
89384585 ATAAGGTAAA
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
41 24 0.44
42 31 0.56
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (41 bp):
AGCCTAGTAAGCTTCGTGCCAGTGAATTGTATCAAGCCTTG
Found at i:89385758 original size:19 final size:19
Alignment explanation
Indices: 89385716--89385751 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
89385706 CCTGCTTCCT
*
89385716 AAATTTTCATATTTTTCTA
1 AAATTTTCATATTTTGCTA
89385735 AAATTTTC-TATTTTGCT
1 AAATTTTCATATTTTGCT
89385752 TCAAATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.28, C:0.11, G:0.03, T:0.58
Consensus pattern (19 bp):
AAATTTTCATATTTTGCTA
Found at i:89392152 original size:30 final size:30
Alignment explanation
Indices: 89392118--89392179 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
89392108 CTTCCGTAGA
* *
89392118 TGACTGTGACCGTATCGTAATCGACTATAG
1 TGACTGTGACCGTATCGTAATCAACCATAG
* *
89392148 TGACTGTGACCGTGTTGTAATCAACCATAG
1 TGACTGTGACCGTATCGTAATCAACCATAG
89392178 TG
1 TG
89392180 CATCTCCCTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (30 bp):
TGACTGTGACCGTATCGTAATCAACCATAG
Found at i:89392469 original size:63 final size:63
Alignment explanation
Indices: 89392352--89392470 Score: 148
Period size: 63 Copynumber: 1.9 Consensus size: 63
89392342 GGAATGTGTC
* ** **
89392352 GGTGCAGGGAATGGTTGTGCATGTTGTAATGCTTGTGGAAAATAAAATGGTGATGACTATGTT
1 GGTGCAGGGAATGATTGTGCATACTGTAATGCTTGTGGAAAATAAAATAATGATGACTATGTT
* ** * *
89392415 GGTGTAGGGAATGATTGTGCATACTGTGGTGCTTGTGTAAAATAAACTAATGATGA
1 GGTGCAGGGAATGATTGTGCATACTGTAATGCTTGTGGAAAATAAAATAATGATGA
89392471 ATGTATCAGT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 46 1.00
ACGTcount: A:0.29, C:0.07, G:0.32, T:0.33
Consensus pattern (63 bp):
GGTGCAGGGAATGATTGTGCATACTGTAATGCTTGTGGAAAATAAAATAATGATGACTATGTT
Found at i:89392553 original size:63 final size:61
Alignment explanation
Indices: 89392486--89392652 Score: 165
Period size: 62 Copynumber: 2.7 Consensus size: 61
89392476 TCAGTGCAAT
* *
89392486 GAATGATTGCACGTGCTGTGGTGCTTATAGAAAATAAACTGGT-TGTGTATGTGTTGGTGAAAG
1 GAATGATTGCGC-TGCTGTGGTGCTTAT-GAAAATAAACTGGTAT-TGTATGTGTTGATGAAAG
* * * * * *
89392549 GAATGATTGCGCTGTTGAGGTGCTTCTGGAAAATAAATTGGTATTGTATGTTTTGATGCAAG
1 GAATGATTGCGCTGCTGTGGTGCTTAT-GAAAATAAACTGGTATTGTATGTGTTGATGAAAG
* * * *
89392611 GAATGGTTGCGTATGCTGTGATGCTTGTGAAAAATAAACTGG
1 GAATGATTGCG-CTGCTGTGGTGCTTATG-AAAATAAACTGG
89392653 AGTTGAAGGT
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
62 51 0.60
63 34 0.40
ACGTcount: A:0.27, C:0.08, G:0.31, T:0.34
Consensus pattern (61 bp):
GAATGATTGCGCTGCTGTGGTGCTTATGAAAATAAACTGGTATTGTATGTGTTGATGAAAG
Found at i:89394339 original size:51 final size:51
Alignment explanation
Indices: 89394279--89394376 Score: 146
Period size: 51 Copynumber: 1.9 Consensus size: 51
89394269 ATTTAAACCG
* *
89394279 CATAATAATTAACTA-TTTAAATTTAAATAATTTAATAA-ATTTTCTTAACAT
1 CATAATAATTAAC-AGATTAAAATTAAATAA-TTAATAATATTTTCTTAACAT
89394330 CATAATAATTAACAGATTAAAATTAAATAATTAATAATATTTTCTTA
1 CATAATAATTAACAGATTAAAATTAAATAATTAATAATATTTTCTTA
89394377 CCATTTGTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
50 8 0.19
51 35 0.81
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (51 bp):
CATAATAATTAACAGATTAAAATTAAATAATTAATAATATTTTCTTAACAT
Found at i:89395063 original size:29 final size:29
Alignment explanation
Indices: 89395031--89395088 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
89395021 TTGGTGTAAT
* *
89395031 TGTACATATGAAA-TTTGAATTGTGATTCA
1 TGTACACATGAAACTTT-AATTCTGATTCA
*
89395060 TGTATACATGAAACTTTAATTCTGATTCA
1 TGTACACATGAAACTTTAATTCTGATTCA
89395089 ATTGTGCACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 22 0.88
30 3 0.12
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.41
Consensus pattern (29 bp):
TGTACACATGAAACTTTAATTCTGATTCA
Found at i:89412728 original size:44 final size:44
Alignment explanation
Indices: 89412661--89412767 Score: 178
Period size: 44 Copynumber: 2.4 Consensus size: 44
89412651 ATATCAACTA
*
89412661 ATTTGGCTTTGGGCCATGGTATCAGATTTCGAATAAGCTACCTTG
1 ATTTGGCTTT-GGCCATGATATCAGATTTCGAATAAGCTACCTTG
*
89412706 ATTTGGCTTTGGCCATGATATCAGATTTCGGATAAGCTACCTTG
1 ATTTGGCTTTGGCCATGATATCAGATTTCGAATAAGCTACCTTG
89412750 ATTTGGCTTCTGGCCATG
1 ATTTGGCTT-TGGCCATG
89412768 GTATAGGTAC
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
44 41 0.69
45 18 0.31
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (44 bp):
ATTTGGCTTTGGCCATGATATCAGATTTCGAATAAGCTACCTTG
Found at i:89414078 original size:52 final size:52
Alignment explanation
Indices: 89413965--89414142 Score: 215
Period size: 52 Copynumber: 3.5 Consensus size: 52
89413955 ACTAGTGCCT
*
89413965 CAAGTGTGGTACTATGTGAAGGCCA-TTT-TG-AGAAGAGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA-AGATAGCTTTGATCA
* *
89414014 CAAGTGTGGTACTGTGTGAAGGCCACTTTGTGAAGAAAGATATCTTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGATCA
* * *
89414066 CAAGTGTGGTACTACGTAAAGGCCACTTTGTGAAG-AAGGTAGCTTTGA-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGATC-A
* * *
89414117 CAAGGGTGGTATTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
89414143 CGGGTATCCG
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
49 24 0.22
50 4 0.04
51 41 0.37
52 42 0.38
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGATCA
Done.