Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 31 of 427
Found at i:7989080 original size:132 final size:132
Alignment explanation
Indices: 7988806--7989088 Score: 410
Period size: 132 Copynumber: 2.2 Consensus size: 132
7988796 TGAGTTCTTC
*
7988806 GATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
1 GATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTGT
* * *
7988870 TCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGT
66 TCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTATAAGCACAGGAATGG
7988935 CA
131 CA
* * *
7988937 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTGTTTTTCAACTTG
1 GATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACT-ATCTTCAACTTG
* * **
7989002 TTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTACTTCACTATAA-CTTAGGAA-G
65 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTATAAGCACAGGAATG
7989065 GCGA
130 GC-A
* *
7989069 TATCTGCTATCTTTGATCTG
1 GATCTGCTATCTTCGATCTG
7989089 CCCCCCGTCT
Statistics
Matches: 136, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
131 10 0.07
132 66 0.49
133 60 0.44
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (132 bp):
GATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACTTGT
TCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTATAAGCACAGGAATGG
CA
Found at i:7989114 original size:133 final size:133
Alignment explanation
Indices: 7988806--7989119 Score: 352
Period size: 133 Copynumber: 2.4 Consensus size: 133
7988796 TGAGTTCTTC
** * * * * * *
7988806 GATCTGCT-TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCT-ATCTTCAACTTG
1 GATCTGCTATCTTCGATCTGCCCCCTATAAGCACAGAGACGCCAAATCTACTGTTTTTCAACTTG
* *
7988869 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATG
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTATAAGCACAGGAATG
*
7988934 TCA
131 GCA
** * *
7988937 GATCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTACTGTTTTTCAACTTG
1 GATCTGCTATCTTCGATCTGCCCCCTATAAGCACAGAGACGCCAAATCTACTGTTTTTCAACTTG
* * **
7989002 TTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATCTACTTCACTATAA-CTTAGGAA-G
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTATAAGCACAGGAATG
7989065 GCGA
131 GC-A
* * *
7989069 TATCTGCTATCTTTGATCTGCCCCCCGTCT-A-CTACAGAGACGCCAAATCTA
1 GATCTGCTATCTTCGATCTG-CCCCC-TATAAGC-ACAGAGACGCCAAATCTA
7989120 TTTCTTCAAT
Statistics
Matches: 159, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
131 10 0.06
132 67 0.42
133 80 0.50
134 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (133 bp):
GATCTGCTATCTTCGATCTGCCCCCTATAAGCACAGAGACGCCAAATCTACTGTTTTTCAACTTG
TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTATAAGCACAGGAATG
GCA
Found at i:7989488 original size:204 final size:205
Alignment explanation
Indices: 7989137--7989703 Score: 1014
Period size: 204 Copynumber: 2.8 Consensus size: 205
7989127 AATTTATTCC
* * *
7989137 CTGACGATATAGAGACGACAAATCATCTTAGATTTTCTTTCTTGTAATCACGTGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATC
7989202 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
66 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
7989267 GAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTC
131 GAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTC
7989332 GATTCGTTCT
196 GATTCGTTCT
7989342 CTGACGATACAGAGACGACAAATCATCTTAGATTTGC-TTCTCGTAATCACGTGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATC
7989406 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
66 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
7989471 GAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTC
131 GAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTC
7989536 GATTCGTTCT
196 GATTCGTTCT
* * *
7989546 CTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCATAATCACATGAAAGCCAAATC
1 CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATC
* *
7989611 AGCTTTGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
66 AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
* *
7989676 -ATAA-CATCTGAAGGCCAGATCTGTTATG
131 GA-AATCATCTGAAGGCGAGATCTGCTATG
7989704 CTACGGCCTA
Statistics
Matches: 350, Mismatches: 10, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
204 225 0.64
205 125 0.36
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (205 bp):
CTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCTCGTAATCACGTGAAAGCCAAATC
AGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGATCTGCTTCAGT
GAAATCATCTGAAGGCGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAAGATGCCAAACTTC
GATTCGTTCT
Found at i:7997737 original size:15 final size:14
Alignment explanation
Indices: 7997695--7997744 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7997685 ATAACTTTGA
*
7997695 ATGCAAATGATGTG
1 ATGCAAATGATGAG
7997709 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
7997724 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
7997738 ATGCAAA
1 ATGCAAA
7997745 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:8002166 original size:38 final size:39
Alignment explanation
Indices: 8002113--8002263 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
8002103 GATTCCACTC
* * *
8002113 CCCCATGCTACTTTG-TTTTATTATTAATTAAAACTACT
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
8002151 CCCCATACTATTTTG-TTTTATTATTAATTAAAACTATT
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
*
8002189 CCCCCATACTATTTTGTTTTTATTATTAATTAAAACCATT
1 -CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
8002229 CCCCATACTATTTTGTTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTTATTATTAATTAAAAC
8002264 CATACTTTAT
Statistics
Matches: 107, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 35 0.33
39 50 0.47
40 22 0.21
ACGTcount: A:0.30, C:0.19, G:0.03, T:0.48
Consensus pattern (39 bp):
CCCCATACTATTTTGTTTTTATTATTAATTAAAACTATT
Found at i:8004048 original size:7 final size:7
Alignment explanation
Indices: 8004036--8004060 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8004026 AATAGTATTC
8004036 AATATAT
1 AATATAT
8004043 AATATAT
1 AATATAT
8004050 AATATAT
1 AATATAT
8004057 AATA
1 AATA
8004061 ACAAGGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AATATAT
Found at i:8004951 original size:16 final size:15
Alignment explanation
Indices: 8004925--8004959 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
8004915 TGATGTGAAT
8004925 AATATAAAATATTAA
1 AATATAAAATATTAA
*
8004940 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
8004956 AATA
1 AATA
8004960 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:8005149 original size:25 final size:25
Alignment explanation
Indices: 8005121--8005311 Score: 103
Period size: 25 Copynumber: 7.8 Consensus size: 25
8005111 ATATAATATT
*
8005121 AAAAATATGTACATAATATAGTGTA
1 AAAAATATATACATAATATAGTGTA
* *
8005146 AAAAATACATACATAATATAAT-T-
1 AAAAATATATACATAATATAGTGTA
* *
8005169 -AAAATATATACATAAGATAACATGTAA
1 AAAAATATATACATAATAT-A-GTGT-A
* * *
8005196 AATAAATATATAAATAATATAGTATT
1 AA-AAATATATACATAATATAGTGTA
* *
8005222 AAAGATATATACATAAAATA--GTA
1 AAAAATATATACATAATATAGTGTA
* * * **
8005245 TAATATATATACGTAATATAGAAT-
1 AAAAATATATACATAATATAGTGTA
** *
8005269 TTAAA-ATATACCTAATATA-T-TA
1 AAAAATATATACATAATATAGTGTA
*
8005291 AAAGAATATATATATAATATA
1 AAA-AATATATACATAATATA
8005312 ATATTAAGAA
Statistics
Matches: 126, Mismatches: 28, Indels: 25
0.70 0.16 0.14
Matches are distributed among these distances:
21 1 0.01
22 17 0.13
23 33 0.26
24 18 0.14
25 36 0.29
26 2 0.02
27 2 0.02
28 2 0.02
29 15 0.12
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.33
Consensus pattern (25 bp):
AAAAATATATACATAATATAGTGTA
Found at i:8005224 original size:23 final size:24
Alignment explanation
Indices: 8005201--8005332 Score: 103
Period size: 23 Copynumber: 5.6 Consensus size: 24
8005191 TGTAAAATAA
*
8005201 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATT-AAG
* *
8005226 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* *
8005249 ATATATACGTAATATAGAATTTAA-
1 ATATATACATAATATAGTA-TTAAG
* * *
8005273 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
* *
8005295 AATATATATATAATATAATATTAAG
1 -ATATATACATAATATAGTATTAAG
*
8005320 AAATATA-ATAATA
1 ATATATACATAATA
8005333 ACAAAAAAAG
Statistics
Matches: 86, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
21 2 0.02
23 39 0.45
24 22 0.26
25 23 0.27
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:8005308 original size:24 final size:23
Alignment explanation
Indices: 8005272--8005332 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
8005262 ATAGAATTTA
* *
8005272 AAATATACCTAATATATTA-AAAG
1 AAATATA-ATAATATAATATAAAG
*
8005295 AATATATATATAATATAATATTAAG
1 AA-ATATA-ATAATATAATATAAAG
8005320 AAATATAATAATA
1 AAATATAATAATA
8005333 ACAAAAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 8 0.25
24 19 0.59
25 5 0.16
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (23 bp):
AAATATAATAATATAATATAAAG
Found at i:8005853 original size:30 final size:30
Alignment explanation
Indices: 8005812--8005910 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
8005802 TAGGTACAAG
8005812 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
8005842 AGGTAGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
8005872 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
8005902 TGGTGGTGG
1 TGGTGGTGG
8005911 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:8007363 original size:25 final size:27
Alignment explanation
Indices: 8007324--8007376 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
8007314 TCAAACATGC
8007324 ATTTCGGTCAATTTAACT-CTAGGGGT
1 ATTTCGGTCAATTTAACTACTAGGGGT
* *
8007350 ATTTC-GTTAATTTATCTACTAGGGGT
1 ATTTCGGTCAATTTAACTACTAGGGGT
8007376 A
1 A
8007377 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.42
Consensus pattern (27 bp):
ATTTCGGTCAATTTAACTACTAGGGGT
Found at i:8008894 original size:26 final size:26
Alignment explanation
Indices: 8008863--8008970 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
8008853 TGAAATTCCC
*
8008863 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
8008889 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
8008915 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8008941 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8008967 ATCA
1 ATCA
8008971 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8009561 original size:21 final size:21
Alignment explanation
Indices: 8009535--8009576 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8009525 GATATTCTCG
8009535 ATTAGCTCCACTGCAACTTCA
1 ATTAGCTCCACTGCAACTTCA
* *
8009556 ATTAGCTTCACTGTAACTTCA
1 ATTAGCTCCACTGCAACTTCA
8009577 GGGATATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.33
Consensus pattern (21 bp):
ATTAGCTCCACTGCAACTTCA
Found at i:8009814 original size:14 final size:13
Alignment explanation
Indices: 8009767--8009806 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
8009757 TGATTTTTTT
8009767 TTAAAACACAGAAA
1 TTAAAA-ACAGAAA
8009781 TTAAAAAACAGAAA
1 TT-AAAAACAGAAA
*
8009795 CTAAAAACAGAA
1 TTAAAAACAGAA
8009807 TTTGAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 10 0.42
14 10 0.42
15 4 0.17
ACGTcount: A:0.68, C:0.12, G:0.07, T:0.12
Consensus pattern (13 bp):
TTAAAAACAGAAA
Found at i:8009914 original size:13 final size:14
Alignment explanation
Indices: 8009869--8009918 Score: 66
Period size: 15 Copynumber: 3.6 Consensus size: 14
8009859 GAGTTGATTT
*
8009869 TTGAAAAGCATAAA
1 TTGAAAAGCAGAAA
8009883 TTGAAAAAGCAGAAA
1 TTG-AAAAGCAGAAA
*
8009898 TTGAAAA-CAGAAT
1 TTGAAAAGCAGAAA
8009911 TTGAAAAG
1 TTGAAAAG
8009919 ACCTCGGCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 12 0.38
14 7 0.22
15 13 0.41
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:8009920 original size:103 final size:103
Alignment explanation
Indices: 8009690--8009973 Score: 374
Period size: 103 Copynumber: 2.7 Consensus size: 103
8009680 AACTAGACAT
* * * * * * *
8009690 TAAAAACAGAAATTGAAAATAGCTCAGCACGTGAG-CCAAGGCTCAACTCACCTCTCGCAATATG
1 TAAAAACAGAATTTGAAAAGACCTCGGCATGTG-GCCCGAGACTCAACTCACCTCTCGCAATATG
*
8009754 AGTTGATTTTTTTTTAAAACACAGAAATTAAAAAACAGAAAC
65 AGTTGA---TTTTTGAAAACACAGAAATTAAAAAACAGAAAC
8009796 TAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGA
1 TAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGA
* * * *
8009861 GTTGATTTTTGAAAA-GCATAAATTGAAAAAGCAGAAAT
66 GTTGATTTTTGAAAACACAGAAATT-AAAAAACAGAAAC
* * *
8009899 TGAAAACAGAATTTGAAAAGACCTCGGCGTGTGGCCCGAGACTCAACTCACCTCTCGCAATACGA
1 TAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGA
8009964 GTTGATTTTT
66 GTTGATTTTT
8009974 TTGACAACAA
Statistics
Matches: 161, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
102 7 0.04
103 92 0.57
105 1 0.01
106 61 0.38
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (103 bp):
TAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAACACAGAAATTAAAAAACAGAAAC
Found at i:8010086 original size:73 final size:73
Alignment explanation
Indices: 8009940--8010128 Score: 292
Period size: 73 Copynumber: 2.6 Consensus size: 73
8009930 TGGCCCGAGA
* *
8009940 CTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAC-AACAAAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTCAACG
8010004 TGTCCTGAGG
64 TGTCCTGAGG
* * *
8010014 CTCAATTCACCTCTCACAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAACGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTG
8010079 -CCTTGAGG
66 TCC-TGAGG
8010087 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA
8010129 GTGTAACGGC
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
72 9 0.09
73 70 0.67
74 26 0.25
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (73 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAACGTG
TCCTGAGG
Found at i:8011627 original size:53 final size:53
Alignment explanation
Indices: 8011471--8011636 Score: 212
Period size: 53 Copynumber: 3.1 Consensus size: 53
8011461 GACGAAAAAT
* **
8011471 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
8011523 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * * *
8011576 ATGTGATAATGTGATTCCGTATAAGATCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
8011630 TATGTGA
1 -ATGTGA
8011637 ACCGTGTAAG
Statistics
Matches: 102, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 80 0.78
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:8024778 original size:16 final size:15
Alignment explanation
Indices: 8024752--8024786 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
8024742 TGATGTGAAT
8024752 AATATAAAATATTAA
1 AATATAAAATATTAA
*
8024767 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
8024783 AATA
1 AATA
8024787 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:8025011 original size:47 final size:48
Alignment explanation
Indices: 8024926--8025073 Score: 129
Period size: 48 Copynumber: 3.0 Consensus size: 48
8024916 TGTACATATA
* * * *
8024926 TAAAAAATAAATACGTGATA-ATATTAAAAATATGTACATAATATAGTG
1 TAAAAAATAAATACATAATATATATT-AAAATATATACATAAAATAGTG
* * *
8024974 TAAAAAATACATACATAATATA-ATTAAAATATATACATAAGATAACATG
1 TAAAAAATAAATACATAATATATATTAAAATATATACATAAAAT-A-GTG
* * *
8025023 TAAAATATATATATAAATAATATAGTATTAAAGATATATGCATAAAATAGT
1 TAAAA-A-ATAAATACATAATATA-TATTAAA-ATATATACATAAAATAGT
8025074 ATAATATATA
Statistics
Matches: 81, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
47 16 0.20
48 21 0.26
49 8 0.10
50 1 0.01
51 14 0.17
52 1 0.01
53 7 0.09
54 13 0.16
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (48 bp):
TAAAAAATAAATACATAATATATATTAAAATATATACATAAAATAGTG
Found at i:8025059 original size:25 final size:25
Alignment explanation
Indices: 8024947--8025148 Score: 98
Period size: 25 Copynumber: 8.2 Consensus size: 25
8024937 TACGTGATAA
* *
8024947 TATTAAAAATATGTACATAATATAG
1 TATTAAAGATATATACATAATATAG
* * * *
8024972 TGTAAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAATATAG
* *
8024996 -ATTAAA-ATATATACATAAGATAA
1 TATTAAAGATATATACATAATATAG
* * *
8025019 CATGTAAAATATATATATAAATAATATAG
1 TAT-T--AA-AGATATATACATAATATAG
* *
8025048 TATTAAAGATATATGCATAAAATAG
1 TATTAAAGATATATACATAATATAG
* **
8025073 TA-TAATATATATATATGTAATATAG
1 TATTAA-AGATATATACATAATATAG
* * *
8025098 AATTTAA-A-ATATACCTAATATA-
1 TATTAAAGATATATACATAATATAG
* * *
8025120 T-TAAAAGA-ATATATATAATATAA
1 TATTAAAGATATATACATAATATAG
8025143 TATTAA
1 TATTAA
8025149 GAAATCTAAT
Statistics
Matches: 134, Mismatches: 31, Indels: 25
0.71 0.16 0.13
Matches are distributed among these distances:
21 3 0.02
22 27 0.20
23 17 0.13
24 9 0.07
25 54 0.40
26 4 0.03
27 2 0.01
28 2 0.01
29 16 0.12
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (25 bp):
TATTAAAGATATATACATAATATAG
Found at i:8025695 original size:18 final size:18
Alignment explanation
Indices: 8025672--8025727 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
8025662 GTGGAGTAGA
8025672 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
8025690 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
8025702 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
8025720 TAGTGGAG
1 TAGTGGAG
8025728 TTGGTGGTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.10
13 4 0.13
14 4 0.13
16 4 0.13
17 4 0.13
18 11 0.37
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:8025729 original size:30 final size:30
Alignment explanation
Indices: 8025639--8025736 Score: 151
Period size: 30 Copynumber: 3.3 Consensus size: 30
8025629 TCGGTACAAG
* *
8025639 TGGTGGTAGAGCAAGTGTGGCTTGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
8025669 AGATAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
8025699 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
8025729 TGGTGGTG
1 TGGTGGTG
8025737 CAAAGGCTAG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.18, C:0.06, G:0.48, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:8027628 original size:2 final size:2
Alignment explanation
Indices: 8027621--8027659 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8027611 CTATCATTTA
8027621 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8027660 ACCCAAATTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8036598 original size:3 final size:3
Alignment explanation
Indices: 8036590--8036892 Score: 225
Period size: 3 Copynumber: 101.7 Consensus size: 3
8036580 AATAAAAAGG
8036590 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
8036638 TAA TAA TAA TAA TAA TAA TAA TAA T-G TAA GTAAA TAG GAA AAGA GAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -T-AA TAA TAA TA-A TAA
* * * * *
8036685 TATA TAA T-G TAA TAA TAA CAA T-A TAA -AT TAA TTAG T-T TAA TAA
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
* * * * *
8036728 T-A TGA TGA TAA TAA TAG TAA TAA T-A CAA TAA TAA TAA TAA -AG TAGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * *
8036774 AAA TAA TAA T-A TACA TTAA TAA GAA TAA TAA TAA T-A TAT TAA TAA
1 TAA TAA TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * **
8036819 TAA -ATA TAA TAGA AAA TAA TAA AAA TAA AAA TAA T-A TGT TAA TAA
1 TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8036864 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8036893 TTATTATTAT
Statistics
Matches: 239, Mismatches: 39, Indels: 44
0.74 0.12 0.14
Matches are distributed among these distances:
2 17 0.07
3 203 0.85
4 15 0.06
5 4 0.02
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8036748 original size:23 final size:23
Alignment explanation
Indices: 8036683--8036889 Score: 85
Period size: 23 Copynumber: 8.8 Consensus size: 23
8036673 AGGAAAAGAG
8036683 AATATATAAT-GTAATAATAACAAT
1 AATA-ATAATAGTAATAAT-ACAAT
**
8036707 -ATAAATTAATTAGTTTAATAATATGAT
1 AAT-AA-TAA-TAG--TAATAATACAAT
*
8036734 GATAATAATAGTAATAATACAAT
1 AATAATAATAGTAATAATACAAT
8036757 AATAATAATA--AAGTAGA-A-AAT
1 AATAATAATAGTAA-TA-ATACAAT
* * * *
8036778 AATAATATACATTAATAAGAATAAT
1 AATAATA-ATAGTAATAA-TACAAT
*
8036803 AATAAT-ATATTAATAATA-AAT
1 AATAATAATAGTAATAATACAAT
* *
8036824 -ATAATAGAAAATAATAA-A-AAT
1 AATAATA-ATAGTAATAATACAAT
* *
8036845 AAAAATAATATGTTAATAATAATAAT
1 AATAATAATA-G-TAATAAT-ACAAT
*
8036871 AATAATAATAATAATAATA
1 AATAATAATAGTAATAATA
8036890 ATATTATTAT
Statistics
Matches: 145, Mismatches: 15, Indels: 47
0.70 0.07 0.23
Matches are distributed among these distances:
20 5 0.03
21 21 0.14
22 20 0.14
23 41 0.28
24 14 0.10
25 14 0.10
26 16 0.11
27 5 0.03
28 9 0.06
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (23 bp):
AATAATAATAGTAATAATACAAT
Found at i:8036757 original size:14 final size:14
Alignment explanation
Indices: 8036740--8036892 Score: 70
Period size: 14 Copynumber: 10.9 Consensus size: 14
8036730 TGATGATAAT
*
8036740 AATAGTAATAATAC
1 AATAATAATAATAC
8036754 AATAATAATAATA-
1 AATAATAATAATAC
*
8036767 AAGTAGAAAATAAT--
1 AA-TA-ATAATAATAC
*
8036781 AAT-ATACATTAATAAG
1 AATAATA-A-TAAT-AC
*
8036797 AATAATAATAATAT
1 AATAATAATAATAC
* *
8036811 ATTAATAATAAATAT
1 AATAATAAT-AATAC
* *
8036826 AATAGAAAATAATAAA
1 AATA-ATAATAAT-AC
* *
8036842 AATAAAAATAATAT
1 AATAATAATAATAC
**
8036856 GTTAATAATAAT--
1 AATAATAATAATAC
8036868 AATAATAATAAT--
1 AATAATAATAATAC
8036880 AATAATAATAATA
1 AATAATAATAATA
8036893 TTATTATTAT
Statistics
Matches: 113, Mismatches: 14, Indels: 25
0.74 0.09 0.16
Matches are distributed among these distances:
11 2 0.02
12 23 0.20
13 7 0.06
14 35 0.31
15 30 0.27
16 13 0.12
17 3 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (14 bp):
AATAATAATAATAC
Found at i:8036785 original size:77 final size:73
Alignment explanation
Indices: 8036704--8036892 Score: 181
Period size: 77 Copynumber: 2.5 Consensus size: 73
8036694 TAATAATAAC
* ** *
8036704 AATATAAATTAATTAGTTTAATAAT-ATGATGA-TAATAAT-AGTAATAATACAATAATAATAAT
1 AATATAAATTAATAAGAATAATAATAAT-AT-ATTAATAATAAAT-ATAATACAA-AATAATAA-
8036766 AAAGTAGAAAATAAT
61 AAA-TA-AAAATAAT
* *
8036781 AATATACATTAATAAGAATAATAATAATATATTAATAATAAATATAATAGAAAATAATAAAAATA
1 AATATAAATTAATAAGAATAATAATAATATATTAATAATAAATATAATACAAAATAATAAAAATA
8036846 AAAATAAT
66 AAAATAAT
* * * *
8036854 -ATGTTAA-TAATAATAATAATAATAATAATAATAATAATA
1 AATATAAATTAATAAGAATAATAATAAT-ATATTAATAATA
8036893 TTATTATTAT
Statistics
Matches: 97, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
71 18 0.19
72 15 0.15
73 8 0.08
74 2 0.02
75 3 0.03
76 9 0.09
77 38 0.39
78 4 0.04
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (73 bp):
AATATAAATTAATAAGAATAATAATAATATATTAATAATAAATATAATACAAAATAATAAAAATA
AAAATAAT
Found at i:8036897 original size:3 final size:3
Alignment explanation
Indices: 8036891--8036916 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8036881 ATAATAATAA
8036891 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
8036917 AACTAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8038142 original size:14 final size:15
Alignment explanation
Indices: 8038113--8038145 Score: 50
Period size: 14 Copynumber: 2.2 Consensus size: 15
8038103 ACTATTTTAA
8038113 TTTATTTTGATTTGTT
1 TTTATTTT-ATTTGTT
8038129 TTTATTTT-TTTGTT
1 TTTATTTTATTTGTT
8038143 TTT
1 TTT
8038146 GGTTTCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
16 8 0.47
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (15 bp):
TTTATTTTATTTGTT
Found at i:8038475 original size:45 final size:45
Alignment explanation
Indices: 8038403--8039266 Score: 229
Period size: 45 Copynumber: 18.3 Consensus size: 45
8038393 TTTGGTCTAT
* * * * *
8038403 TCCATTGCAACTTCTGGGAAATGAGGTTCACTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
* * * ** **
8038448 TCCGCTGCAACTTCAGGGAGATAAGGTT-GGTGGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
*
8038492 TCCACTGCAACTTCA-GGAAGATAAGATCCACCATAATTTGTAACTTCAATCTGC
1 TCCACTGCAACTTCAGGGAA-ATAAGATTCA-C-T-A----T--CTTCAATCTGC
* ** * *
8038546 TCCACTGCAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTAC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
* * * ** ** *
8038591 TCCGCTACAACTTCAGGGAAATAAGACT-GGTGGCTTCAATCTAC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
* * *
8038635 TCCACTGCAACTTCA-GGAAGGTAAGATCCACCATAATTTGCAGCTTTAATCTGC
1 TCCACTGCAACTTCAGGGAA-ATAAGATTCA-C-T-A--T----CTTCAATCTGC
* * * *
8038689 TCCACTTCAACGTT-AGGGAAATAAGATTCGCTGTCTTCAGTCTGC
1 TCCACTGCAAC-TTCAGGGAAATAAGATTCACTATCTTCAATCTGC
* * * ** **
8038734 TCCGCTGCAACTTTAAGGAGAAA-ATG-TT-GGTGGCTTCAATCTGC
1 TCCACTGCAAC-TTCAGG-GAAATAAGATTCACTATCTTCAATCTGC
* *
8038778 TCCACTGCAACTTCA-GGAAGATAAGATTCGCCATAATTTATAGCTTTAATCTGC
1 TCCACTGCAACTTCAGGGAA-ATAAGATT---C---A-CTAT--CTTCAATCTGC
* ** ** * * *
8038832 TCCACTACAACACCAGGGAAATAAGATTTGCTGTCTTCAGTCTAC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
** * * * ** * **
8038877 TCTGCTACAACTTTAGGGAGATAAGGCTGA-TGGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
* *
8038921 TCCACTGTAACTTCA-GGAAGATAAGATTTGC-CATAATTTGTAGCTTTAATCTGC
1 TCCACTGCAACTTCAGGGAA-ATAAGA-TT-CAC-T-A----T--CTTCAATCTGC
* * * * * * *
8038975 TCTACTACAACGTCAGGGAAATAAGATTCACTGTCTACAGTTTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
* * * * *
8039020 TCCATTACAACTTTA-GGAAGATAAGATCTGC-CATAATTTGTAGCTTTAATTTGC
1 TCCACTGCAACTTCAGGGAA-ATAAGAT-T-CAC-T-A----T--CTTCAATCTGC
* * * *
8039074 TCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTAC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
* * * * *
8039119 TTCGCTGCAACTTTAGGGAGATAAGA--CA-TGTGGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTCACTAT--CTTCAATCTGC
* * * *
8039163 TCCACTGCAACTTCA-GGAAGATAAGATTCGCCATCTTCGATCTAC
1 TCCACTGCAACTTCAGGGAA-ATAAGATTCACTATCTTCAATCTGC
* * * *
8039208 TCCACTGCAACTTCAAGGAGATAAGA-TCTAC-AACTTCAATTTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTC-ACTATCTTCAATCTGC
*
8039252 TCCACTGCTACTTCA
1 TCCACTGCAACTTCA
8039267 AGGAGATGAA
Statistics
Matches: 595, Mismatches: 148, Indels: 153
0.66 0.17 0.17
Matches are distributed among these distances:
41 3 0.01
42 4 0.01
43 19 0.03
44 167 0.28
45 193 0.32
46 11 0.02
47 15 0.03
49 1 0.00
51 2 0.00
52 8 0.01
53 7 0.01
54 143 0.24
55 22 0.04
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAATCTGC
Found at i:8038596 original size:143 final size:143
Alignment explanation
Indices: 8038410--8039044 Score: 795
Period size: 143 Copynumber: 4.4 Consensus size: 143
8038400 TATTCCATTG
* * * * * * *
8038410 CAACTTCTGGGAAATGAGGTTCACTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGT
1 CAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAGATAAGGC
* *
8038475 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAACTTCA
66 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTTA
*
8038540 ATCTGCTCCACTG
131 ATCTGCTCCACTA
* * * *
8038553 CAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAAATAAGAC
1 CAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAGATAAGGC
* * *
8038618 TGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGGTAAGATCCACCATAATTTGCAGCTTTA
66 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTTA
*
8038683 ATCTGCTCCACTT
131 ATCTGCTCCACTA
* * * * * * *
8038696 CAACGTT-AGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTTAAGGAGAAAATG
1 CAAC-TTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAGATAAGG
* * * *
8038760 TTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTATAGCTTT
65 CTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTT
8038825 AATCTGCTCCACTA
130 AATCTGCTCCACTA
** * * * *
8038839 CAACACCAGGGAAATAAGATTTGCTGTCTTCAGTCTACTCTGCTACAACTTTAGGGAGATAAGGC
1 CAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAGATAAGGC
* * ***
8038904 TGATGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAGATTTGCCATAATTTGTAGCTTTA
66 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTTA
*
8038969 ATCTGCTCTACTA
131 ATCTGCTCCACTA
* * * * * * ** * *
8038982 CAACGTCAGGGAAATAAGATTCACTGTCTACAGTTTGCTCCATTACAACTTTAGGAAGATAAG
1 CAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAGATAAG
8039045 ATCTGCCATA
Statistics
Matches: 430, Mismatches: 60, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
143 428 1.00
144 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (143 bp):
CAACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAGATAAGGC
TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTTA
ATCTGCTCCACTA
Found at i:8039034 original size:286 final size:286
Alignment explanation
Indices: 8038418--8039022 Score: 895
Period size: 286 Copynumber: 2.1 Consensus size: 286
8038408 TGCAACTTCT
* * * * * *
8038418 GGGAAATGAGGTTCACTATCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGTTGGTGGCT
1 GGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAAGGAGAAAAGGTTGGTGGCT
*
8038483 TCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAACTTCAATCTGCTC
66 TCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTATAACTTCAATCTGCTC
* ** *
8038548 CACTGCAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAAAT
131 CACTACAACACCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAAAT
* *
8038613 AAGACTGGTGGCTTCAATCTACTCCACTGCAACTTCAGGAAGGTAAGATCCACCATAATTTGCAG
196 AAGACTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGCAG
* *
8038678 CTTTAATCTGCTCCACTTCAACGTTA
261 CTTTAATCTGCTCCACTACAACGTCA
* *
8038704 GGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTTAAGGAGAAAATGTTGGTGGCT
1 GGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAAGGAGAAAAGGTTGGTGGCT
* * * *
8038769 TCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTATAGCTTTAATCTGCTC
66 TCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTATAACTTCAATCTGCTC
* * * *
8038834 CACTACAACACCAGGGAAATAAGATTTGCTGTCTTCAGTCTACTCTGCTACAACTTTAGGGAGAT
131 CACTACAACACCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAAAT
* * * *** *
8038899 AAGGCTGATGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAGATTTGCCATAATTTGTAG
196 AAGACTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGCAG
*
8038964 CTTTAATCTGCTCTACTACAACGTCA
261 CTTTAATCTGCTCCACTACAACGTCA
* *
8038990 GGGAAATAAGATTCACTGTCTACAGTTTGCTCC
1 GGGAAATAAGATTCACTGTCTTCAGTCTGCTCC
8039023 ATTACAACTT
Statistics
Matches: 283, Mismatches: 36, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
286 283 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (286 bp):
GGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTTAAGGAGAAAAGGTTGGTGGCT
TCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTATAACTTCAATCTGCTC
CACTACAACACCAGGGAAATAAGATTTGCTATCTTCAGTCTACTCCGCTACAACTTCAGGGAAAT
AAGACTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGCAG
CTTTAATCTGCTCCACTACAACGTCA
Found at i:8039130 original size:99 final size:99
Alignment explanation
Indices: 8038920--8039144 Score: 279
Period size: 99 Copynumber: 2.3 Consensus size: 99
8038910 CTTCAATCTG
** * * *
8038920 CTCCACTGTAACTTCAGGAAGATAAGATTTGCCATAATTTGTAGCTTTAATCTGCTCTACTACAA
1 CTCCACTACAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGCTCCACTACAA
* * *
8038985 CGTCAGGGAAATAAGATTCACTGTCTACAGTTTG
66 CGTCAGGGAAATAAGATTCACTATCTACAGTCTA
* * *
8039019 CTCCATTACAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATTTGCTCCACTGCAA
1 CTCCACTACAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGCTCCACTACAA
* * **
8039084 CTTCAGGGAAATAAGATTCGCTATCTTTAGTCTA
66 CGTCAGGGAAATAAGATTCACTATCTACAGTCTA
* * * *
8039118 CTTCGCTGCAACTTTAGGGAGATAAGA
1 CTCCACTACAACTTTAGGAAGATAAGA
8039145 CATGTGGCTT
Statistics
Matches: 106, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
99 106 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (99 bp):
CTCCACTACAACTTTAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGCTCCACTACAA
CGTCAGGGAAATAAGATTCACTATCTACAGTCTA
Found at i:8039270 original size:44 final size:45
Alignment explanation
Indices: 8039152--8039281 Score: 158
Period size: 45 Copynumber: 2.9 Consensus size: 45
8039142 AGACATGTGG
* *
8039152 CTTCAATCTGCTCCACTGCAACTTC-AGGAAGATAAGATTCGCCAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGG-AGATAAGATTCGACAA
* * *
8039197 CTTCGATCTACTCCACTGCAACTTCAAGGAGATAAGA-TCTACAA
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGACAA
* *
8039241 CTTCAATTTGCTCCACTGCTACTTCAAGGAGATGAA-ATTCG
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGAT-AAGATTCG
8039282 TGAATTCACG
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
44 34 0.47
45 35 0.49
46 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCGACAA
Found at i:8039281 original size:89 final size:89
Alignment explanation
Indices: 8039067--8039281 Score: 240
Period size: 89 Copynumber: 2.4 Consensus size: 89
8039057 TTGTAGCTTT
* * * * * *
8039067 AATTTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTACTTCGCTGCAACTT
1 AATTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCCATCTTGAGTCTACTCCACTGCAACTT
* * ****
8039132 TAGGGAGATAAGACATGTGGCTTC
66 CAAGGAGATAAGACATACAACTTC
*
8039156 AATCTGCTCCACTGCAACTTC-AGGAAGATAAGATTCGCCATCTTCGA-TCTACTCCACTGCAAC
1 AATTTGCTCCACTGCAACTTCAAGG-AGATAAGATTCGCCATCTT-GAGTCTACTCCACTGCAAC
8039219 TTCAAGGAGATAAGATC-TACAACTTC
64 TTCAAGGAGATAAGA-CATACAACTTC
*
8039245 AATTTGCTCCACTGCTACTTCAAGGAGATGAA-ATTCG
1 AATTTGCTCCACTGCAACTTCAAGGAGAT-AAGATTCG
8039282 TGAATTCACG
Statistics
Matches: 106, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
88 2 0.02
89 97 0.92
90 7 0.07
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (89 bp):
AATTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGCCATCTTGAGTCTACTCCACTGCAACTT
CAAGGAGATAAGACATACAACTTC
Found at i:8042048 original size:16 final size:17
Alignment explanation
Indices: 8042023--8042055 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8042013 ATAAATTAAA
*
8042023 TACTATTATAT-TATAT
1 TACTAATATATATATAT
8042039 TACTAATATATATATAT
1 TACTAATATATATATAT
8042056 ATGAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
TACTAATATATATATAT
Found at i:8042137 original size:19 final size:19
Alignment explanation
Indices: 8042115--8042157 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8042105 CGAAAAGCAA
*
8042115 GAGAAGGAA-AGAAAGAAAG
1 GAGAAAGAATAGAAA-AAAG
*
8042134 GAGAAAGAATAGAAAAATG
1 GAGAAAGAATAGAAAAAAG
8042153 GAGAA
1 GAGAA
8042158 TTAAGGTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.63, C:0.00, G:0.33, T:0.05
Consensus pattern (19 bp):
GAGAAAGAATAGAAAAAAG
Found at i:8049485 original size:26 final size:26
Alignment explanation
Indices: 8049450--8049557 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
8049440 TGAAATGCCC
*
8049450 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
8049476 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
8049502 ATAATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
8049528 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
8049554 ATCA
1 ATCA
8049558 ATTTGTATCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:8060457 original size:195 final size:195
Alignment explanation
Indices: 8060125--8060514 Score: 762
Period size: 195 Copynumber: 2.0 Consensus size: 195
8060115 TTAATCAATT
8060125 TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAGTCCCCGTACACC
1 TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAGTCCCCGTACACC
8060190 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
66 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
8060255 GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
131 GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
8060320 TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAGTCCCCGTACACC
1 TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAGTCCCCGTACACC
8060385 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
66 TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
**
8060450 GATATTATTGGTACAGAAGAAGTTCAGTCTTTTAGTAAACGGATAATGATTCCCGTCTGGTGATA
131 GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
8060515 CCAGGATTGC
Statistics
Matches: 193, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
195 193 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (195 bp):
TTAAGTCCCTCACTTCTCATTCTCCACGGATTTGGTAAATCACTAGGGCTGAGTCCCCGTACACC
TCCAAGATCTTGATGTTTCGTTCGATAGCTGCACGAAGCCCGATGATACAGGCCTCATATTCTGA
GATATTATTGGTACAGAAGAAGTTCAGTCTTGCAGTAAACGGATAATGATTCCCGTCTGGTGATA
Found at i:8063137 original size:12 final size:12
Alignment explanation
Indices: 8063102--8063137 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
8063092 TGGGATATGC
* *
8063102 AATGTATGAATA
1 AATGCATGAATG
8063114 AATGCATGAATG
1 AATGCATGAATG
8063126 AATGCATGAATG
1 AATGCATGAATG
8063138 TCAAATGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:8064869 original size:37 final size:38
Alignment explanation
Indices: 8064769--8064870 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
8064759 ATATATTTGG
8064769 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
8064805 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
8064847 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
8064871 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:8065684 original size:27 final size:27
Alignment explanation
Indices: 8065646--8065716 Score: 79
Period size: 32 Copynumber: 2.4 Consensus size: 27
8065636 GTTTTTTTAG
*
8065646 TTTTTTTTTTTTGGGGTTAGGTTTTTC
1 TTTTTTCTTTTTGGGGTTAGGTTTTTC
*
8065673 TTTTCTTCTTTTTTTTTTGGGTTAGGTTTTTC
1 TTTT-TTC----TTTTTGGGGTTAGGTTTTTC
8065705 TTTTTTCTTTTT
1 TTTTTTCTTTTT
8065717 TTTTGGGTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 9 0.24
28 2 0.05
31 3 0.08
32 23 0.62
ACGTcount: A:0.03, C:0.07, G:0.15, T:0.75
Consensus pattern (27 bp):
TTTTTTCTTTTTGGGGTTAGGTTTTTC
Found at i:8065702 original size:17 final size:17
Alignment explanation
Indices: 8065682--8065736 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
8065672 CTTTTCTTCT
8065682 TTTTTTTTTGGGTTAGG
1 TTTTTTTTTGGGTTAGG
*
8065699 TTTTTCTTTT---TT--C
1 TTTTT-TTTTGGGTTAGG
8065712 TTTTTTTTTGGGTTAGG
1 TTTTTTTTTGGGTTAGG
8065729 TTTTTTTT
1 TTTTTTTT
8065737 GGGGGGTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 4 0.13
13 5 0.17
15 4 0.13
17 13 0.43
18 4 0.13
ACGTcount: A:0.04, C:0.04, G:0.18, T:0.75
Consensus pattern (17 bp):
TTTTTTTTTGGGTTAGG
Found at i:8065735 original size:32 final size:32
Alignment explanation
Indices: 8065648--8065733 Score: 149
Period size: 30 Copynumber: 2.7 Consensus size: 32
8065638 TTTTTTAGTT
8065648 TTTTTTTTTTGGGGTTAGGTTTTTCTTTTCTTC
1 TTTTTTTTTT-GGGTTAGGTTTTTCTTTTCTTC
8065681 TTTTTTTTTTGGGTTAGGTTTTTCTTTT-TTC
1 TTTTTTTTTTGGGTTAGGTTTTTCTTTTCTTC
8065712 -TTTTTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTTGGGTTAGGTTTTT
8065734 TTTGGGGGGT
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
30 22 0.42
31 3 0.06
32 18 0.34
33 10 0.19
ACGTcount: A:0.03, C:0.06, G:0.19, T:0.72
Consensus pattern (32 bp):
TTTTTTTTTTGGGTTAGGTTTTTCTTTTCTTC
Found at i:8065834 original size:17 final size:18
Alignment explanation
Indices: 8065812--8065852 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
8065802 AAATGGGTCA
8065812 TGGGTTAAG-GGTTTTAG-
1 TGGGTTAAGAGG-TTTAGT
*
8065829 TGGGTTTAGAGGTTTAGT
1 TGGGTTAAGAGGTTTAGT
8065847 TGGGTT
1 TGGGTT
8065853 TTGATGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (18 bp):
TGGGTTAAGAGGTTTAGT
Found at i:8067624 original size:30 final size:30
Alignment explanation
Indices: 8067588--8067646 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
8067578 AAACTTAAAA
8067588 TTGAGTTAACAAGAAAGATAAAAAATTTAT
1 TTGAGTTAACAAGAAAGATAAAAAATTTAT
8067618 TTGAGTTAACAAGAAAGATAAAAAATTTA
1 TTGAGTTAACAAGAAAGATAAAAAATTTA
8067647 AGATTTGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.14, T:0.29
Consensus pattern (30 bp):
TTGAGTTAACAAGAAAGATAAAAAATTTAT
Found at i:8067736 original size:43 final size:43
Alignment explanation
Indices: 8067688--8067771 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 43
8067678 ATCTTTACCT
** *
8067688 TATTATTTATTTGTTTAATTAATCT-TTACTCAGCCATAGTTTC
1 TATTATTTAGGTGTTGAATTAAT-TGTTACTCAGCCATAGTTTC
* *
8067731 TATTATTTAGGTGTTGAATTAATTGTTGCTCGGCCATAGTT
1 TATTATTTAGGTGTTGAATTAATTGTTACTCAGCCATAGTT
8067772 GATATTTTTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 34 0.97
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (43 bp):
TATTATTTAGGTGTTGAATTAATTGTTACTCAGCCATAGTTTC
Found at i:8071912 original size:53 final size:53
Alignment explanation
Indices: 8071849--8071954 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
8071839 TTTATGCCAC
8071849 GTCATATAAACTTAAATATTATATTTTAAATTCTTTCATTTTACTTTTTTTTT
1 GTCATATAAACTTAAATATTATATTTTAAATTCTTTCATTTTACTTTTTTTTT
8071902 GTCATATAAACTTAAATATTATATTTTAAATTCTTTCATTTTACTTTTTTTTT
1 GTCATATAAACTTAAATATTATATTTTAAATTCTTTCATTTTACTTTTTTTTT
8071955 CTTTTACGCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.58
Consensus pattern (53 bp):
GTCATATAAACTTAAATATTATATTTTAAATTCTTTCATTTTACTTTTTTTTT
Found at i:8072099 original size:2 final size:2
Alignment explanation
Indices: 8072092--8072126 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8072082 TGTATCTACA
8072092 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8072127 AACAACAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8073344 original size:367 final size:363
Alignment explanation
Indices: 8072651--8073346 Score: 912
Period size: 367 Copynumber: 1.9 Consensus size: 363
8072641 ATTTTCATGC
* * ** **
8072651 ATCTAAAAATAGTTAGAGGTAGTGTAGTAAATTAACCAATTATTTTTATTGCTTATACACATGGT
1 ATCTAAAAATAGTTAGAAGTAGTGTAGTAAATTAACCAATTACTTTTATTAATTATACACATCAT
*
8072716 ACATGTATTACATCAAAAATATAATTTTACATTTTCTGTTCCGAAGAATCTTCAAACCCCTAATT
66 ACATGTATTACATCAAAAATATAATTTTACATTTTCTGTTCCAAAGAATCTTCAAACCCCTAATT
* * * * * *
8072781 CTAACTCTATTTCAATTGTATCTTCAAAGGCGAATTCAAACACTACCACCTTCATTGCAATGGTT
131 CTAACTCTATTCCAATTGTATCTCCAAAGGAGAATCCAAACACCACCACCTTCATTGCAATGGTA
* * **
8072846 TGAAGTTTCATATGATAATATAATTAGAGAAATCCCTTCCTCAATAAACAATTTGACTTCTCTTA
196 TGAAGTGTCAAACAATAATATAATTAGAGAAATCCCTTCCTCAATAAACAATTTGACTTCTCTTA
* * * * *
8072911 TGGATCTTAGTCTATCTAAGAATAATTTGGATGGAAGAATTCTAGATTGCATTGGAAACATGAGT
261 TGGATCTTA-TCTATCTAAGAATAATTTGGAAGGAACAATTCCAGAGTGCATTAGAAACATGAGT
8072976 TCTTTAGAAAGTAGTAGTAATTTCCTTCAGTAGATTACA
325 TCTTTAGAAAGTAGTAGTAATTTCCTTCAGTAGATTACA
* **
8073015 ATCTAAAAATGGTTAGAAGTAGTGTAGTAAATTAACTGATTACTTTTATTAATTATACACATCAT
1 ATCTAAAAATAGTTAGAAGTAGTGTAGTAAATTAACCAATTACTTTTATTAATTATACACATCAT
* * *
8073080 GCATGTATTACATCACAAATATAGTTATTTTACAATTTT-TGTTTCAAAGAATCTTCAAACCCCT
66 ACATGTATTACATCA-AAA-ATA-TAATTTTAC-ATTTTCTGTTCCAAAGAATCTTCAAACCCCT
* * * * *
8073144 AATTCTAACTCTATTCCATTTTTATCTCCTAGGGAGAATCCCAACACCACCACCTTCATTGCAAT
127 AATTCTAACTCTATTCCAATTGTATCTCCAAAGGAGAATCCAAACACCACCACCTTCATTGCAAT
* * **
8073209 GGTATGAAGTGTCAAACAATAACT-TAATTGGAGAAATCCCTTCCTCAGTATGCAATTTGACTTC
192 GGTATGAAGTGTCAAACAATAA-TATAATTAGAGAAATCCCTTCCTCAATAAACAATTTGACTTC
* * * **
8073273 TCTTATGGGTTTCTT-TCTGTCTGAGAATAATTTGGAAGGAACAATTCCAGAGTGTTTTAGAAAC
256 TCTTAT-GG-ATCTTATCTATCTAAGAATAATTTGGAAGGAACAATTCCAGAGTGCATTAGAAAC
*
8073337 TTGAGTTCTT
319 ATGAGTTCTT
8073347 CTCTCTTACA
Statistics
Matches: 282, Mismatches: 43, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
364 70 0.25
365 3 0.01
366 3 0.01
367 194 0.69
368 8 0.03
369 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (363 bp):
ATCTAAAAATAGTTAGAAGTAGTGTAGTAAATTAACCAATTACTTTTATTAATTATACACATCAT
ACATGTATTACATCAAAAATATAATTTTACATTTTCTGTTCCAAAGAATCTTCAAACCCCTAATT
CTAACTCTATTCCAATTGTATCTCCAAAGGAGAATCCAAACACCACCACCTTCATTGCAATGGTA
TGAAGTGTCAAACAATAATATAATTAGAGAAATCCCTTCCTCAATAAACAATTTGACTTCTCTTA
TGGATCTTATCTATCTAAGAATAATTTGGAAGGAACAATTCCAGAGTGCATTAGAAACATGAGTT
CTTTAGAAAGTAGTAGTAATTTCCTTCAGTAGATTACA
Found at i:8076565 original size:57 final size:57
Alignment explanation
Indices: 8076499--8076610 Score: 215
Period size: 57 Copynumber: 2.0 Consensus size: 57
8076489 AATTGAGGGT
8076499 TAAATTTATTATTATATCAATTTTTAACTATAATATCCTTTCATTAGAGATTTAATC
1 TAAATTTATTATTATATCAATTTTTAACTATAATATCCTTTCATTAGAGATTTAATC
*
8076556 TAAATTTATTATTATATCGATTTTTAACTATAATATCCTTTCATTAGAGATTTAA
1 TAAATTTATTATTATATCAATTTTTAACTATAATATCCTTTCATTAGAGATTTAA
8076611 CCTACTTAAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.49
Consensus pattern (57 bp):
TAAATTTATTATTATATCAATTTTTAACTATAATATCCTTTCATTAGAGATTTAATC
Found at i:8076608 original size:30 final size:30
Alignment explanation
Indices: 8076518--8076608 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 30
8076508 TATTATATCA
8076518 ATTTTTAACTATAATATCCTTTCATTAGAG
1 ATTTTTAACTATAATATCCTTTCATTAGAG
*
8076548 A--TTTAATCTA-AAT-T--TATT-ATTATATCG
1 ATTTTTAA-CTATAATATCCT-TTCATTAGA--G
8076575 ATTTTTAACTATAATATCCTTTCATTAGAG
1 ATTTTTAACTATAATATCCTTTCATTAGAG
8076605 ATTT
1 ATTT
8076609 AACCTACTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 22
0.67 0.03 0.31
Matches are distributed among these distances:
25 6 0.12
26 2 0.04
27 3 0.06
28 11 0.23
29 11 0.23
30 7 0.15
31 2 0.04
32 6 0.12
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.49
Consensus pattern (30 bp):
ATTTTTAACTATAATATCCTTTCATTAGAG
Found at i:8080887 original size:16 final size:16
Alignment explanation
Indices: 8080866--8080898 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8080856 GATGTATATT
8080866 TAAGATCTCTAAGCTC
1 TAAGATCTCTAAGCTC
8080882 TAAGATCTCTAAGCTC
1 TAAGATCTCTAAGCTC
8080898 T
1 T
8080899 TCAAGGGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (16 bp):
TAAGATCTCTAAGCTC
Found at i:8101899 original size:21 final size:21
Alignment explanation
Indices: 8101873--8101912 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8101863 GATGATAGTG
8101873 ATAGTAATAA-AAGTGAAAATA
1 ATAGTAATAATAA-TGAAAATA
8101894 ATAGTAATAATAATGAAAA
1 ATAGTAATAATAATGAAAA
8101913 ATACAAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (21 bp):
ATAGTAATAATAATGAAAATA
Found at i:8102206 original size:3 final size:3
Alignment explanation
Indices: 8102198--8102318 Score: 51
Period size: 3 Copynumber: 41.7 Consensus size: 3
8102188 GTAACAATAG
* * * *
8102198 AAT AAT AAT AGT AAT GAT AGT AAT AAA AAT AA- AAT AA- AA- AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** *
8102242 AAT AA- AA- AAT AAT AGT AAT GTT AAT ACATT AAG AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT AAT
** *
8102286 GTT AAT AAT AAT AA- ATT AAT GAACT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT -AA-T AAT AAT AA
8102319 AACAGTAAGT
Statistics
Matches: 87, Mismatches: 21, Indels: 20
0.68 0.16 0.16
Matches are distributed among these distances:
2 15 0.17
3 63 0.72
4 6 0.07
5 3 0.03
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8102239 original size:12 final size:12
Alignment explanation
Indices: 8102222--8102253 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
8102212 TGATAGTAAT
8102222 AAAAATAAAATA
1 AAAAATAAAATA
8102234 AAAAATAAAATA
1 AAAAATAAAATA
8102246 AAAAATAA
1 AAAAATAA
8102254 TAGTAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:8110523 original size:88 final size:89
Alignment explanation
Indices: 8110353--8110530 Score: 279
Period size: 89 Copynumber: 2.0 Consensus size: 89
8110343 GTCCCTCTTT
* *
8110353 TTTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAAGGCCCTAAACTTCTT
1 TTTTTTTTCCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAAGGCCCTAAAATTCTT
*
8110418 CAAAAAAAGCAATTAAGCCCTTGC
66 CAAAAAAAGCAATTAAGCCCCTGC
* * *
8110442 TTTTTTTTCCACTCAATTGGGTACTTGAACTTTCAAAATGCATC-AAAAAGGCCCTCAAAATTTT
1 TTTTTTTTCCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAAGGCCCT-AAAATTCT
8110506 TCAAAAAAA-CAATTAAGCCCCTGC
65 TCAAAAAAAGCAATTAAGCCCCTGC
8110530 T
1 T
8110531 CTTATTAAAA
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
88 26 0.32
89 56 0.68
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.31
Consensus pattern (89 bp):
TTTTTTTTCCACTCAATTGAGCACTTGAACTTTCAAAATGCATCAAAAAAGGCCCTAAAATTCTT
CAAAAAAAGCAATTAAGCCCCTGC
Found at i:8110574 original size:18 final size:18
Alignment explanation
Indices: 8110553--8110593 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8110543 TAAAAAAATT
8110553 ATAAATGA-TAAATTTTA
1 ATAAATGATTAAATTTTA
*
8110570 GATAAATTATTAAATTTTA
1 -ATAAATGATTAAATTTTA
8110589 ATAAA
1 ATAAA
8110594 AATATGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (18 bp):
ATAAATGATTAAATTTTA
Found at i:8110919 original size:28 final size:28
Alignment explanation
Indices: 8110888--8110942 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
8110878 TTTCTTACGA
8110888 ATTTATA-AAATTTTATAAATTTTTTTAT
1 ATTTATATAAATTTTAT-AATTTTTTTAT
*
8110916 ATTTATATATATTTTATAATTTTTTTA
1 ATTTATATAAATTTTATAATTTTTTTA
8110943 CAATTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (28 bp):
ATTTATATAAATTTTATAATTTTTTTAT
Found at i:8110952 original size:20 final size:20
Alignment explanation
Indices: 8110851--8110953 Score: 56
Period size: 20 Copynumber: 5.3 Consensus size: 20
8110841 ATTTACGAAA
*
8110851 TTTAT-ATTTCTTTAC-ATT
1 TTTATAATTTTTTTACAATT
*
8110869 TTCTATAATTTTCTTACGAATT
1 TT-TATAATTTTTTTAC-AATT
* * *
8110891 TATA-AAATTTTATA-AATT
1 TTTATAATTTTTTTACAATT
* * * *
8110909 TTT-TTATATTTATA-TATAT
1 TTTATAATTTTTTTACAAT-T
8110928 TTTATAATTTTTTTACAATT
1 TTTATAATTTTTTTACAATT
8110948 TTTATA
1 TTTATA
8110954 TTATTTATTA
Statistics
Matches: 62, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
18 17 0.27
19 7 0.11
20 30 0.48
21 4 0.06
22 4 0.06
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (20 bp):
TTTATAATTTTTTTACAATT
Found at i:8110954 original size:29 final size:29
Alignment explanation
Indices: 8110872--8110959 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
8110862 TTACATTTTC
* *
8110872 TATAATTTTCTTACGAATTTATA-AAATTT
1 TATAATTTTTTTAC-AATTTATATATATTT
*
8110901 TATAAATTTTTTTA-TATTTATATATATTT
1 TAT-AATTTTTTTACAATTTATATATATTT
*
8110930 TATAATTTTTTTACAATTTTTATATTATTT
1 TATAATTTTTTTACAATTTATATA-TATTT
8110960 ATTAAAATTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
28 17 0.34
29 19 0.38
30 14 0.28
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (29 bp):
TATAATTTTTTTACAATTTATATATATTT
Found at i:8111128 original size:89 final size:87
Alignment explanation
Indices: 8111027--8111237 Score: 255
Period size: 90 Copynumber: 2.4 Consensus size: 87
8111017 TAATAAAAGC
* * * * *
8111027 ATGGGCTCAATTG-TTTTTTTGAAAAAATTTGAGGGGCTTTTTTATGCATTTTGAAAGTTCAAGT
1 ATGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTAATCCATTTTGAAAGTTCAAGT
* *
8111091 ACCCAATTGAGTTCGAAACAAAAA
66 ACCCAAATGAGTGC-AAA-AAAAA
* * *
8111115 TATGGGCTTAATTGCTTTTTTT-AAAAAGGCTTGAAGGCCTTTTTAATCCATTTTGAAAGTTTAA
1 -ATGGGCTTAATTGCTTTTTTTGAAAAA-GTTTGAGGGCCTTTTTAATCCATTTTGAAAGTTCAA
*
8111179 GTATCCAAATGAGTGCAAAAAAAA
64 GTACCCAAATGAGTGCAAAAAAAA
**
8111203 AAAGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGG
1 ATGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGG
8111238 ACTTTTTGCA
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
87 25 0.24
88 10 0.10
89 20 0.19
90 49 0.47
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (87 bp):
ATGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTAATCCATTTTGAAAGTTCAAGT
ACCCAAATGAGTGCAAAAAAAA
Found at i:8112930 original size:88 final size:88
Alignment explanation
Indices: 8112753--8112914 Score: 243
Period size: 88 Copynumber: 1.8 Consensus size: 88
8112743 CAGGCTAAAA
* * * * * * *
8112753 ATTACAGACCTTATCTCCATGTATCTGCTATGGAGTAGATTTTAGCCACTAGTCTTATCTTTCTG
1 ATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTG
*
8112818 AAGTTATAGGAAGCAGATCAAAG
66 AAGTTACAGGAAGCAGATCAAAG
*
8112841 ATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGGTTTTAACCACCAGCCTTATCTCTCTG
1 ATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTG
8112906 AAGTTACAG
66 AAGTTACAG
8112915 AGAGCAAGTT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 65 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (88 bp):
ATTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAACCACCAGCCTTATCTCTCTG
AAGTTACAGGAAGCAGATCAAAG
Found at i:8113041 original size:176 final size:176
Alignment explanation
Indices: 8112849--8113786 Score: 1437
Period size: 176 Copynumber: 5.3 Consensus size: 176
8112839 AGATTACAGA
* * *
8112849 TCTTATCTCCATGTATCGGCTATGGAGCAGGTTTTAACCACCAGCCTTATCTCTCTGAAGTTACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* * * * *
8112914 GAGAGCAAGTTGAAGATATAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGATCGAAGATTACTG
66 GAGAGCAGGTTGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG
** * ** *
8112979 ATCTTATCTCCATGTATCGGTTATAGAGCAGATCGAAAGTGGCGAG
131 ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
* * * * *
8113025 TCTTATCTCTATGTATCGGTTATGGAGCAGATTTTGGTCACCAGCTTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
8113090 GAGAGCAGGTTGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG
66 GAGAGCAGGTTGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG
8113155 ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
131 ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
* *
8113201 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACTAGTCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* * * * * *
8113266 GAGAGCAGGTTAAAGATACAGGTCTTATCTTTCTGAAGTTGTAGCAAGCAGATCGAAGATTACTG
66 GAGAGCAGGTTGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG
* ** * *
8113331 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAGTGGTGAG
131 ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
* * *
8113377 TCTTATTTCCATGTATCGGCTATGGAGCAGATTTTGGTCACCAGCCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* * * * *
8113442 GAGAGCAGGTTGAAGATATAGGTATTATCTTTCTGAAGTTGTAGGAAGCAGACTGAAAATTTCAG
66 GAGAGCAGGTTGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG
8113507 ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
131 ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
* *
8113553 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGGCTTATCTCTCTGAAGTTACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* *
8113618 GAGAGCAGGTTAAAGATACAGGTCTTATCTTTCTGAAGTTGCGGGAAGCAGACCGAAGATTTCAG
66 GAGAGCAGGTTGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG
*
8113683 ATCTTATCTCCATGTATCGACTATGGAGCAAATAAAAAATGGCGAG
131 ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
* *
8113729 TCTTATCTCTATGTATCGGCTATGGAGTAGATTTTAGCCA-CAGACCTTATCTCTCTGA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CCTTATCTCTCTGA
8113787 GGTAGCGGAG
Statistics
Matches: 689, Mismatches: 72, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
175 3 0.00
176 686 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (176 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTTGCA
GAGAGCAGGTTGAAGATACAGGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACCGAAGATTTCAG
ATCTTATCTCCATGTATCGACTATGGAGCAGATAAAAAATGGCGAG
Found at i:8113148 original size:43 final size:44
Alignment explanation
Indices: 8113071--8113164 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 44
8113061 GTCACCAGCT
*** *
8113071 TTATCTCTCTGAAGTTGCAGAGAGCAGGTTGAAGA-TACAGGTC
1 TTATCTCTCTGAAGTTGCAGAGAGCAGACCGAAGATTACAGATC
* *
8113114 TTATCTTTCTGAAGTTGCAG-GAAGCAGACCGAAGATTTCAGATC
1 TTATCTCTCTGAAGTTGCAGAG-AGCAGACCGAAGATTACAGATC
8113158 TTATCTC
1 TTATCTC
8113165 CATGTATCGA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 29 0.69
44 12 0.29
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (44 bp):
TTATCTCTCTGAAGTTGCAGAGAGCAGACCGAAGATTACAGATC
Found at i:8113325 original size:43 final size:44
Alignment explanation
Indices: 8113244--8113340 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 44
8113234 TTAGCCACTA
* *
8113244 GTCTTATCTCTCTGAAGTTGCAGAGAGCAGGTTAAAGA-TACAG
1 GTCTTATCTCTCTGAAGTTGCAGAGAGCAGATCAAAGATTACAG
* * * *
8113287 GTCTTATCTTTCTGAAGTTGTAGCA-AGCAGATCGAAGATTACTG
1 GTCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCAAAGATTACAG
*
8113331 ATCTTATCTC
1 GTCTTATCTC
8113341 CATGTATCGG
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
43 31 0.70
44 13 0.30
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33
Consensus pattern (44 bp):
GTCTTATCTCTCTGAAGTTGCAGAGAGCAGATCAAAGATTACAG
Found at i:8113364 original size:45 final size:45
Alignment explanation
Indices: 8113312--8113408 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
8113302 AGTTGTAGCA
*
8113312 AGCAGATCGAAGATTACTGA-TCTTATCTCCATGTATCGGCTATGG
1 AGCAGATCGAA-AGTACTGAGTCTTATCTCCATGTATCGGCTATGG
** *
8113357 AGCAGATCGAAAGTGGTGAGTCTTATTTCCATGTATCGGCTATGG
1 AGCAGATCGAAAGTACTGAGTCTTATCTCCATGTATCGGCTATGG
8113402 AGCAGAT
1 AGCAGAT
8113409 TTTGGTCACC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
44 5 0.11
45 42 0.89
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (45 bp):
AGCAGATCGAAAGTACTGAGTCTTATCTCCATGTATCGGCTATGG
Found at i:8117425 original size:338 final size:339
Alignment explanation
Indices: 8116801--8117483 Score: 1190
Period size: 338 Copynumber: 2.0 Consensus size: 339
8116791 ACCTGGCCCA
8116801 ACTCGAAAGGCTGCTCAAAAAGTGGATGGATTTGGGTAAAAATATAAACTCGAAAAACGGACTTG
1 ACTCGAAAGGCTGCTCAAAAAGTGGATGGATTTGGGTAAAAATATAAACTCGAAAAACGGACTTG
*
8116866 AACAAAAACATAATGCTCGTTTTCTTAACAAACCAAGCCTCATGTAAGTTTTTTTTTTTTTTTTT
66 AACAAAAAAATAATGCTCGTTTTCTTAACAAACCAAGCCTCATGTAAG---TTTTTTTTTTTTTT
* * *
8116931 TGCCCGGCTTGAATACCCTTAACAAAGTATCAATACCGTTTTAAAATTCAATGTTTTGAAATTTT
128 TGCCCAGCTCGAATACCCTTAACAAAGTATCAATACCGTTTTAAAATTCAATGTTTTGAAAATTT
*
8116996 TAAATAAAATTGTTTGAGTATATATAATGATAAATTTAGCCCTCAACGTTTATATTCTTTTCAAT
193 TAAATAAAATTGTTTGAGTATATATAATGATAAATTTAGCCCTCAACATTTATATTCTTTTCAAT
* * *
8117061 TTTATCCTTATTCTTTTTTGAGCTAAATTTGACCTTCAATATTTCAAAAAAAGTCAAATTACTTC
258 TTGATCCTTATTCTTTTTTGAGCTAAATTTAACCTTCAATATTTCAAAAAAAGTCAAATCACTTC
8117126 TTTTAACAGAAATGCTT
323 TTTTAACAGAAATGCTT
* *
8117143 ACTCG-AAGGCCTGCTCAAAAAGTGGATGGGTTTTGGTAAAAATATAAACTCGAAAAACGGACTT
1 ACTCGAAAGG-CTGCTCAAAAAGTGGATGGATTTGGGTAAAAATATAAACTCGAAAAACGGACTT
*
8117207 GGACAAAAAAATAATGCTCGTTTTCTTAACAAACCAAGCCTCATGTAAG-TTTTTTTTTTTTTTG
65 GAACAAAAAAATAATGCTCGTTTTCTTAACAAACCAAGCCTCATGTAAGTTTTTTTTTTTTTTTG
8117271 CCCAGCTCGAATACCCTTAACAAAGTATCAATACCGTTTTAAAATTCAATGTTTTGAAAATTTTA
130 CCCAGCTCGAATACCCTTAACAAAGTATCAATACCGTTTTAAAATTCAATGTTTTGAAAATTTTA
*
8117336 AATAAAATTTTTTGAGTATATATAATGATAAATTTAGCCCTCAACATTTATATTCTTTTCAATTT
195 AATAAAATTGTTTGAGTATATATAATGATAAATTTAGCCCTCAACATTTATATTCTTTTCAATTT
* *
8117401 GATCCTTATTCTTTTTTTAGCTAAATTTAACCTTTAATATTTCAAAAAAAGTCAAATCACTTCTT
260 GATCCTTATTCTTTTTTGAGCTAAATTTAACCTTCAATATTTCAAAAAAAGTCAAATCACTTCTT
8117466 TTAACAGAAATGCTT
325 TTAACAGAAATGCTT
8117481 ACT
1 ACT
8117484 AGAACATTAA
Statistics
Matches: 326, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
338 218 0.67
341 4 0.01
342 104 0.32
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.38
Consensus pattern (339 bp):
ACTCGAAAGGCTGCTCAAAAAGTGGATGGATTTGGGTAAAAATATAAACTCGAAAAACGGACTTG
AACAAAAAAATAATGCTCGTTTTCTTAACAAACCAAGCCTCATGTAAGTTTTTTTTTTTTTTTGC
CCAGCTCGAATACCCTTAACAAAGTATCAATACCGTTTTAAAATTCAATGTTTTGAAAATTTTAA
ATAAAATTGTTTGAGTATATATAATGATAAATTTAGCCCTCAACATTTATATTCTTTTCAATTTG
ATCCTTATTCTTTTTTGAGCTAAATTTAACCTTCAATATTTCAAAAAAAGTCAAATCACTTCTTT
TAACAGAAATGCTT
Found at i:8119685 original size:51 final size:51
Alignment explanation
Indices: 8119609--8119758 Score: 291
Period size: 51 Copynumber: 2.9 Consensus size: 51
8119599 AGTTGGACTG
8119609 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA
1 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA
*
8119660 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTG
1 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA
8119711 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTA
1 CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTA
8119759 CTTATGGGGA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 98 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (51 bp):
CTGATCCTTGGATATACAGTAATACTTGGCTTCATCTAAAAAATGTTATTA
Found at i:8125827 original size:29 final size:29
Alignment explanation
Indices: 8125795--8125917 Score: 105
Period size: 29 Copynumber: 4.4 Consensus size: 29
8125785 AAGAATGTGG
8125795 AAAATAAAATAGAGAAACGGTTGATATGA
1 AAAATAAAATAGAGAAACGGTTGATATGA
* ***** *
8125824 AAAATAAAATACGGGAAA-AAACAATAAGA
1 AAAATAAAATA-GAGAAACGGTTGATATGA
*
8125853 AAAATAAAATAGGGAAAC-----ATATGA
1 AAAATAAAATAGAGAAACGGTTGATATGA
* *
8125877 AAAATAAAATAGAGAAATGGTTGATATGG
1 AAAATAAAATAGAGAAACGGTTGATATGA
8125906 AAAATAAAATAG
1 AAAATAAAATAG
8125918 GGGAGAAAGA
Statistics
Matches: 76, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
24 21 0.28
28 6 0.08
29 44 0.58
30 5 0.07
ACGTcount: A:0.61, C:0.03, G:0.18, T:0.18
Consensus pattern (29 bp):
AAAATAAAATAGAGAAACGGTTGATATGA
Found at i:8125878 original size:24 final size:25
Alignment explanation
Indices: 8125818--8125893 Score: 91
Period size: 24 Copynumber: 2.9 Consensus size: 25
8125808 GAAACGGTTG
8125818 ATATGAAAAATAAAATACGGGAAAAAACA
1 ATATGAAAAATAAAATA-GGG---AAACA
*
8125847 ATAAGAAAAATAAAATAGGGAAAC-
1 ATATGAAAAATAAAATAGGGAAACA
*
8125871 ATATGAAAAATAAAATAGAGAAA
1 ATATGAAAAATAAAATAGGGAAA
8125894 TGGTTGATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
24 21 0.48
25 4 0.09
28 3 0.07
29 16 0.36
ACGTcount: A:0.67, C:0.04, G:0.14, T:0.14
Consensus pattern (25 bp):
ATATGAAAAATAAAATAGGGAAACA
Found at i:8125970 original size:29 final size:29
Alignment explanation
Indices: 8125928--8125985 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
8125918 GGGAGAAAGA
8125928 AGAGAAATGGTTGATTTGAAAAATAAAAT
1 AGAGAAATGGTTGATTTGAAAAATAAAAT
* *
8125957 AGAGATATGGTTGATTTGGAAAATAAAAT
1 AGAGAAATGGTTGATTTGAAAAATAAAAT
8125986 TATCTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.29
Consensus pattern (29 bp):
AGAGAAATGGTTGATTTGAAAAATAAAAT
Found at i:8126660 original size:13 final size:13
Alignment explanation
Indices: 8126642--8126668 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8126632 TTAACGAGAT
8126642 TAATTATATAAAA
1 TAATTATATAAAA
8126655 TAATTATATAAAA
1 TAATTATATAAAA
8126668 T
1 T
8126669 TGAGGAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATTATATAAAA
Found at i:8140545 original size:1 final size:1
Alignment explanation
Indices: 8140513--8140538 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
8140503 TTTCTCACTC
8140513 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
8140539 ACTTTTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8141548 original size:22 final size:23
Alignment explanation
Indices: 8141506--8141550 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8141496 GTATTCGAAT
8141506 AATATATCAATTATATAAATTAA
1 AATATATCAATTATATAAATTAA
* *
8141529 AATATATTATTTA-ATAAATTAA
1 AATATATCAATTATATAAATTAA
8141551 GAAAATAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
AATATATCAATTATATAAATTAA
Found at i:8148684 original size:46 final size:46
Alignment explanation
Indices: 8148632--8148945 Score: 407
Period size: 46 Copynumber: 6.8 Consensus size: 46
8148622 AGTGTGCTCT
* * *
8148632 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATTGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8148678 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8148724 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8148770 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
8148816 CTGACATGAAATGAGGAAGACCATGGTTGAAAGATACTGTGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
8148862 ATGACGA-GAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGA-TATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
8148909 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
8148946 TATGACATCA
Statistics
Matches: 244, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
46 205 0.84
47 39 0.16
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8150021 original size:26 final size:26
Alignment explanation
Indices: 8149985--8150146 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
8149975 TGATACAAAT
8149985 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8150011 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
8150037 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
8150063 TGATAATAGGTTAGGTAAATGTTCTA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
8150089 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
8150115 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
8150141 TGATAA
1 TGATAA
8150147 GAATTTCATG
Statistics
Matches: 128, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 128 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:8150075 original size:78 final size:78
Alignment explanation
Indices: 8149985--8150146 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
8149975 TGATACAAAT
8149985 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
8150050 GGTAAATGTTTCA
66 GGTAAATGTTTCA
* * *
8150063 TGATAATAGGTTAGGTAAATGTTCTATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
8150128 GGTAAATGTTTCA
66 GGTAAATGTTTCA
8150141 TGATAA
1 TGATAA
8150147 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
GGTAAATGTTTCA
Found at i:8151333 original size:8 final size:8
Alignment explanation
Indices: 8151320--8151356 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
8151310 CTAGATTGGC
8151320 AAAAGCCG
1 AAAAGCCG
8151328 AAAAGCCG
1 AAAAGCCG
8151336 AAAAGCCG
1 AAAAGCCG
*
8151344 AAATGCCG
1 AAAAGCCG
8151352 AAAAG
1 AAAAG
8151357 TCAGTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.24, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:8151813 original size:27 final size:26
Alignment explanation
Indices: 8151772--8151912 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 26
8151762 AGGAAGCGTC
8151772 CTGGTGGCTAC-GCCACAATTATCTGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGAT
* *
8151799 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
8151826 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
8151853 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
8151880 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
8151907 CTGGTG
1 CTGGTG
8151913 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
26 11 0.11
27 85 0.87
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:8151854 original size:54 final size:53
Alignment explanation
Indices: 8151772--8151912 Score: 210
Period size: 54 Copynumber: 2.6 Consensus size: 53
8151762 AGGAAGCGTC
* *
8151772 CTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
8151826 CTGGTGGCTATGCCACGATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
8151880 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
8151913 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:8151923 original size:27 final size:26
Alignment explanation
Indices: 8151783--8151930 Score: 136
Period size: 27 Copynumber: 5.5 Consensus size: 26
8151773 TGGTGGCTAC
* *
8151783 GCCACAATTATCTGATCTGGTGGCTCT
1 GCCACAA-TATCTGTTCTGGTGACTCT
* * *
8151810 GCCACATATATTTGTTCTGGTGGCTAT
1 GCCACA-ATATCTGTTCTGGTGACTCT
* * * *
8151837 GCCACGATTATCTGATCTAGTGGCTCT
1 GCCAC-AATATCTGTTCTGGTGACTCT
*
8151864 GCCACATATATCTGTTCTGGTGGCTCT
1 GCCACA-ATATCTGTTCTGGTGACTCT
8151891 GCCACAATATCTGTATCTGGTGACT-T
1 GCCACAATATCTGT-TCTGGTGACTCT
*
8151917 CGTCACAATATCTG
1 -GCCACAATATCTG
8151931 GCAGCCTCGC
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
26 10 0.10
27 91 0.88
28 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACTCT
Found at i:8154967 original size:31 final size:31
Alignment explanation
Indices: 8154896--8154979 Score: 109
Period size: 31 Copynumber: 2.8 Consensus size: 31
8154886 ATGATAGTAA
8154896 AAAATATAATTTTATTA-TTTT-AAAAAGAT
1 AAAATATAATTTTATTATTTTTAAAAAAGAT
* * *
8154925 AAATTAAAATTTTATTATTTTTAAAAAAGTT
1 AAAATATAATTTTATTATTTTTAAAAAAGAT
* *
8154956 AAAATGTAATTTTATTATTATTAA
1 AAAATATAATTTTATTATTTTTAA
8154980 TTTTAAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
29 15 0.33
30 4 0.09
31 27 0.59
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.48
Consensus pattern (31 bp):
AAAATATAATTTTATTATTTTTAAAAAAGAT
Found at i:8155447 original size:9 final size:9
Alignment explanation
Indices: 8155435--8155461 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8155425 AAAATATTTA
8155435 TTTTAATAT
1 TTTTAATAT
8155444 TTTTAATAT
1 TTTTAATAT
8155453 TTTTAATAT
1 TTTTAATAT
8155462 ATTATATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTAATAT
Found at i:8160929 original size:18 final size:18
Alignment explanation
Indices: 8160906--8160940 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8160896 CTAATGTGAT
*
8160906 TGAAAGCACATTCTGTAC
1 TGAAAGCACACTCTGTAC
8160924 TGAAAGCACACTCTGTA
1 TGAAAGCACACTCTGTA
8160941 AGACGTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (18 bp):
TGAAAGCACACTCTGTAC
Found at i:8163316 original size:17 final size:16
Alignment explanation
Indices: 8163273--8163321 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
8163263 ATAATACTTC
*
8163273 ATAAATATATATACGTA
1 ATAAA-ATATATACATA
*
8163290 CTAAAA-ATATACATA
1 ATAAAATATATACATA
8163305 ATAATAATATATACATA
1 ATAA-AATATATACATA
8163322 CAAAGTACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 11 0.41
16 3 0.11
17 13 0.48
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (16 bp):
ATAAAATATATACATA
Found at i:8163383 original size:16 final size:16
Alignment explanation
Indices: 8163359--8163389 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8163349 AATAGTAAAC
*
8163359 ATAATATTAATATTAA
1 ATAAAATTAATATTAA
8163375 ATAAAATTAATATTA
1 ATAAAATTAATATTA
8163390 CAAATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAAAATTAATATTAA
Found at i:8165045 original size:49 final size:50
Alignment explanation
Indices: 8164976--8165159 Score: 192
Period size: 49 Copynumber: 3.7 Consensus size: 50
8164966 ATCTATTGTG
* * *
8164976 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
8165026 -GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTGCCTA-ATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AGATAA-TT
* * * * **
8165076 CGATCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
8165126 AGGTTACGTGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
8165160 TGCGTACTAG
Statistics
Matches: 106, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
49 37 0.35
50 35 0.33
51 34 0.32
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:8166981 original size:21 final size:21
Alignment explanation
Indices: 8166941--8166984 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
8166931 TAATTAACTT
8166941 TAAATTTTTATGATGTAAAAA
1 TAAATTTTTATGATGTAAAAA
8166962 TAAATATTTTAT-AT-TAAAAA
1 TAAAT-TTTTATGATGTAAAAA
8166982 TAA
1 TAA
8166985 CAAAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.41
21 7 0.32
22 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
TAAATTTTTATGATGTAAAAA
Found at i:8179014 original size:2 final size:2
Alignment explanation
Indices: 8179009--8179041 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8178999 CTCTCTCTCT
8179009 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
8179042 TGTTAGTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:8180012 original size:24 final size:24
Alignment explanation
Indices: 8179974--8180020 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
8179964 AATAAATTTT
8179974 GAAATAAAAGATAATTTGAAAAAAAG
1 GAAATAAAAGATAA--TGAAAAAAAG
8180000 GAAA-AAAAG-TAATGAAAAAAA
1 GAAATAAAAGATAATGAAAAAAA
8180021 AAATCCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.43
24 3 0.14
25 5 0.24
26 4 0.19
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (24 bp):
GAAATAAAAGATAATGAAAAAAAG
Found at i:8185845 original size:17 final size:17
Alignment explanation
Indices: 8185823--8185860 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
8185813 ACTTTAGATT
*
8185823 TTTTTTTAAAAAATTAA
1 TTTTTTTAAAAAATAAA
*
8185840 TTTTTTTAAAATATAAA
1 TTTTTTTAAAAAATAAA
8185857 TTTT
1 TTTT
8185861 GGAAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTTTTAAAAAATAAA
Found at i:8185875 original size:23 final size:21
Alignment explanation
Indices: 8185864--8185912 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
8185854 AAATTTTGGA
8185864 AATTTTTTAATAAACATTTTG
1 AATTTTTTAATAAACATTTTG
* **
8185885 AATTTTTGAA-AATTATTTTG
1 AATTTTTTAATAAACATTTTG
8185905 AATTTTTT
1 AATTTTTT
8185913 TTGTAATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (21 bp):
AATTTTTTAATAAACATTTTG
Found at i:8187046 original size:29 final size:29
Alignment explanation
Indices: 8187014--8187075 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
8187004 TGCCAATAAA
8187014 ATTAAATTCTTGAAA-AT-AAAAATATAGAG
1 ATTAAATT-TT-AAATATAAAAAATATAGAG
*
8187043 ATTAAATTTTAAATTTTAAAAAATATAGAG
1 ATTAAATTTTAAA-TATAAAAAATATAGAG
8187073 ATT
1 ATT
8187076 TATGAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 3 0.10
28 2 0.07
29 9 0.31
30 15 0.52
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (29 bp):
ATTAAATTTTAAATATAAAAAATATAGAG
Found at i:8192053 original size:46 final size:46
Alignment explanation
Indices: 8192003--8192093 Score: 155
Period size: 46 Copynumber: 2.0 Consensus size: 46
8191993 GAACCAGAAT
*
8192003 TATTTTTATAGATATTAAATTTTTTTAAGTTAGATTGATAAAATAG
1 TATTTTTATAAATATTAAATTTTTTTAAGTTAGATTGATAAAATAG
* *
8192049 TATTTTTATAAATATTAAATTTTTTTGAGTTTGATTGATAAAATA
1 TATTTTTATAAATATTAAATTTTTTTAAGTTAGATTGATAAAATA
8192094 ACGTATGTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (46 bp):
TATTTTTATAAATATTAAATTTTTTTAAGTTAGATTGATAAAATAG
Found at i:8192435 original size:79 final size:79
Alignment explanation
Indices: 8192304--8192461 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
8192294 ATCTCAAACT
8192304 CCGATGATCAGTATAGATTTTAAAATGTTTTCCTACTAAATAGGGACTCCATTTCTTCACAACAA
1 CCGATGATCAGTATAGATTTTAAAATGTTTTCCTACTAAATAGGGACTCCATTTCTTCACAACAA
8192369 ACAACACAACTAGC
66 ACAACACAACTAGC
8192383 CCGATGATCAGTATAGATTTTAAAATGTTTTCCTACTAAATAGGGACTCCATTTCTTCACAACAA
1 CCGATGATCAGTATAGATTTTAAAATGTTTTCCTACTAAATAGGGACTCCATTTCTTCACAACAA
8192448 ACAACACAACTAGC
66 ACAACACAACTAGC
8192462 ACCTCCTTAT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (79 bp):
CCGATGATCAGTATAGATTTTAAAATGTTTTCCTACTAAATAGGGACTCCATTTCTTCACAACAA
ACAACACAACTAGC
Found at i:8194866 original size:13 final size:13
Alignment explanation
Indices: 8194841--8194873 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
8194831 TGTTAAGCAA
8194841 TAAATAA-TTTTT
1 TAAATAATTTTTT
8194853 TAAATAATTTTTT
1 TAAATAATTTTTT
8194866 TAAATAAT
1 TAAATAAT
8194874 AAATATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TAAATAATTTTTT
Found at i:8197523 original size:12 final size:12
Alignment explanation
Indices: 8197489--8197522 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8197479 AAATGACAAT
8197489 GATAACGAAAAC
1 GATAACGAAAAC
*
8197501 GAAAACGAAAAC
1 GATAACGAAAAC
8197513 GATAAC-AAAA
1 GATAACGAAAA
8197523 ATAATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.65, C:0.15, G:0.15, T:0.06
Consensus pattern (12 bp):
GATAACGAAAAC
Found at i:8197700 original size:2 final size:2
Alignment explanation
Indices: 8197693--8197717 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8197683 GATATTTACA
8197693 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8197718 AAACATAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8198055 original size:9 final size:9
Alignment explanation
Indices: 8198038--8198136 Score: 51
Period size: 9 Copynumber: 10.7 Consensus size: 9
8198028 TGATAGTATG
*
8198038 TACACAATA
1 TACATAATA
8198047 TACATAATA
1 TACATAATA
* *
8198056 TATTAAAATA
1 TA-CATAATA
*
8198066 TATATACATA
1 TACATA-ATA
*
8198076 TA-ATATTTA
1 TACATA-ATA
*
8198085 TA-AAAATA
1 TACATAATA
* *
8198093 TAAAAATATA
1 TACATA-ATA
8198103 TACATAATA
1 TACATAATA
8198112 TACATAAAGTA
1 TACAT-AA-TA
8198123 TACAT-ATA
1 TACATAATA
8198131 TACATA
1 TACATA
8198137 TTTATAATAC
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
8 11 0.15
9 34 0.47
10 21 0.29
11 7 0.10
ACGTcount: A:0.57, C:0.08, G:0.01, T:0.34
Consensus pattern (9 bp):
TACATAATA
Found at i:8198093 original size:23 final size:22
Alignment explanation
Indices: 8198043--8198118 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
8198033 GTATGTACAC
8198043 AATATACATAATATATTAAAAT
1 AATATACATAATATATTAAAAT
8198065 ATATATACAT-ATAATATTTATAAA-
1 A-ATATACATAAT-ATA-TTA-AAAT
* *
8198089 AATATA-AAAATATA-T-ACAT
1 AATATACATAATATATTAAAAT
8198108 AATATACATAA
1 AATATACATAA
8198119 AGTATACATA
Statistics
Matches: 44, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
18 2 0.05
19 6 0.14
20 4 0.09
22 7 0.16
23 18 0.41
24 4 0.09
25 3 0.07
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
AATATACATAATATATTAAAAT
Found at i:8198101 original size:25 final size:25
Alignment explanation
Indices: 8198050--8198102 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
8198040 CACAATATAC
* * *
8198050 ATAATATATTAAAATATATATACAT
1 ATAATATATTAAAAAATATAAAAAT
8198075 ATAATAT-TTATAAAAATATAAAAAT
1 ATAATATATTA-AAAAATATAAAAAT
8198100 ATA
1 ATA
8198103 TACATAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAATATATTAAAAAATATAAAAAT
Found at i:8200070 original size:30 final size:30
Alignment explanation
Indices: 8200036--8200115 Score: 142
Period size: 30 Copynumber: 2.7 Consensus size: 30
8200026 AAATTCAACC
* *
8200036 TGTTACCCTACTGTTTAGGGAAATTCGGCT
1 TGTTACCCTACTGCTTAGGGAAATCCGGCT
8200066 TGTTACCCTACTGCTTAGGGAAATCCGGCT
1 TGTTACCCTACTGCTTAGGGAAATCCGGCT
8200096 TGTTACCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGG
8200116 GGTTGAAGCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (30 bp):
TGTTACCCTACTGCTTAGGGAAATCCGGCT
Found at i:8200504 original size:44 final size:44
Alignment explanation
Indices: 8200454--8200690 Score: 171
Period size: 44 Copynumber: 5.4 Consensus size: 44
8200444 TGATCTGCTT
* * *
8200454 CCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
* **** *
8200498 CCCTACTGCTTAGGGGGTTAA-AGCTTGTTGTCTTCGATCTAT-TT-
1 CCCTACTGCTTAGGGGGTTAAGATCTT-TCAAATTC-AGCT-TGTTA
* * *
8200542 CCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAACCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
* * ** *** * *
8200585 CCCTACTGCTTAGGGGTTTAAGGTCCATCGGCTTC-GATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCT-TGTTA
* * * *
8200629 CCCTACTGCTTAGGGTGATAAGATC-TGCAAATTCGGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
8200672 CCCTACTGCTTAGGGGGTT
1 CCCTACTGCTTAGGGGGTT
8200691 GAAGCTCGTT
Statistics
Matches: 145, Mismatches: 39, Indels: 19
0.71 0.19 0.09
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 56 0.39
44 75 0.52
45 8 0.06
46 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
Found at i:8200620 original size:87 final size:87
Alignment explanation
Indices: 8200452--8201036 Score: 450
Period size: 87 Copynumber: 6.7 Consensus size: 87
8200442 TTTGATCTGC
* * *
8200452 TTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTT
1 TTCCCTACTGCTTAGGGGGATAAGATCTGT-AAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT
* * *
8200517 AAAG-CTTGTTGTCTTCGATCTAT
65 AAGGTC-CGTCGTCTTCGATCTAT
* * *
8200540 TTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTA
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
* * *
8200605 AGGTCCATCGGCTTCGATCTGT
66 AGGTCCGTCGTCTTCGATCTAT
* * * *
8200627 TTCCCTACTGCTTAGGGTGATAAGATCTGCAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTG
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT-
* ** *
8200692 AAGCT-CGTTATCTTCGATCTGT
65 AAGGTCCGTCGTCTTCGATCTAT
* * * ** * * ** ***
8200714 TTCCTTGCTGCTTA-GGGG-TAAGATTTGTAAATCTTCAATCTGCTT-CACTGCAACTTCAGCAA
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAA--TTCAGCCTG-TTACCCTACTGCTT-AGGGG
** * * * ** *
8200776 GACAAGATTCGCCGGATTTGAT-T-T
62 GTTAAGGTCCGTCGTCTTCGATCTAT
* ** * * * * *
8200800 GTTCCACTGCAACTTCAGGGAGACAAGATCTGTAATTTTCAGCCTATTACCCTACTGCCTAGGGG
1 -TTCC-CTACTGCTT-AGGGGGATAAGATCTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGG
* * *
8200865 GCTAAGGCCCTTCGTCTTCGATCTA-
62 GTTAAGGTCCGTCGTCTTCGATCTAT
* * * *
8200890 CTCCACTACTGCTTAGGGAGACAAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAGGGGGTT
1 TTCC-CTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT
* * *
8200954 AAAGCCCTTCGTCTTCGATCTAT
65 AAGGTCCGTCGTCTTCGATCTAT
* * *
8200977 TTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
8201037 AGATAAGGCT
Statistics
Matches: 385, Mismatches: 94, Indels: 37
0.75 0.18 0.07
Matches are distributed among these distances:
85 11 0.03
86 74 0.19
87 181 0.47
88 66 0.17
89 27 0.07
90 16 0.04
91 10 0.03
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.34
Consensus pattern (87 bp):
TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
AGGTCCGTCGTCTTCGATCTAT
Found at i:8201035 original size:43 final size:44
Alignment explanation
Indices: 8200895--8201175 Score: 157
Period size: 43 Copynumber: 6.5 Consensus size: 44
8200885 ATCTACTCCA
* ** * *
8200895 CTACTGCTTAGGGAGACAAGATCTAT-AAT-TCAGCCTGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTAGCCTGTTACC
** ** * * * *
8200937 CTACTGCTTAGGGGGTTAAAGCCCT-T-CGTCTTCGATCTATTTCC
1 CTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTAG-CCTGTTACC
*
8200981 CTACTACTTAGGGGGTTAAGATCTGTAAAT-TTAGCCTGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTAGCCTGTTACC
* * * ** *
8201024 CTACTGCTTAGGGAGATAAG-GCTTGTAAAT-TCGGCTTGTTACC
1 CTACTGCTTAGGGGGTTAAGATC-TGTAAATCTTAGCCTGTTACC
* * * ** * * * * *
8201067 CTACTGCTTATGGAGTTAA-AGC-CCATCATCTTTGATCTATTTCC
1 CTACTGCTTAGGGGGTTAAGATCTGTA-AATCTTAG-CCTGTTACC
*
8201111 CTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACC
1 CTACTGCTTAGGGGGTTAAGATCTGTAAATCTT-AGCCTGTTACC
*
8201156 CTACTGCTTAGGGGTTTAAG
1 CTACTGCTTAGGGGGTTAAG
8201176 GCTTGTGAAT
Statistics
Matches: 174, Mismatches: 52, Indels: 23
0.70 0.21 0.09
Matches are distributed among these distances:
41 1 0.01
42 19 0.11
43 73 0.42
44 47 0.27
45 32 0.18
46 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGGGTTAAGATCTGTAAATCTTAGCCTGTTACC
Found at i:8201076 original size:130 final size:132
Alignment explanation
Indices: 8200895--8201188 Score: 427
Period size: 130 Copynumber: 2.2 Consensus size: 132
8200885 ATCTACTCCA
* * * *
8200895 CTACTGCTTAGGGAGACAA-G-ATCTATAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAG
1 CTACTGCTTAGGGAGATAAGGCTTGTA-AATTCAGCCTGTTACCCTACTGCTTAGGGAGTTAAAG
* *
8200958 CCCTTCGTCTTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAAAT-TT-AGCCTGTT
65 CCCATCATCTTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTT
8201021 ACC
130 ACC
* * *
8201024 CTACTGCTTAGGGAGATAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTATGGAGTTAAAGC
1 CTACTGCTTAGGGAGATAAGGCTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGAGTTAAAGC
*
8201089 CCATCATCTTTGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
66 CCATCATCTTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
8201154 CC
131 CC
* *
8201156 CTACTGCTTAGGG-GTTTAAGGCTTGTGAATTCA
1 CTACTGCTTAGGGAG-ATAAGGCTTGTAAATTCA
8201189 CTGATTCTAG
Statistics
Matches: 147, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
129 18 0.12
130 84 0.57
131 6 0.04
132 39 0.27
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (132 bp):
CTACTGCTTAGGGAGATAAGGCTTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGAGTTAAAGC
CCATCATCTTCGATCTATTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTA
CC
Found at i:8201348 original size:61 final size:64
Alignment explanation
Indices: 8201232--8201356 Score: 186
Period size: 61 Copynumber: 2.0 Consensus size: 64
8201222 CCATGTATCT
*
8201232 ATGCTTATGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
8201296 ATGCTTTATGTCAACTAATTAGGATG-T-T-AT-GAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
8201357 TTATTATATG
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
61 30 0.53
62 2 0.04
63 1 0.02
64 5 0.09
65 19 0.33
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:8203009 original size:11 final size:11
Alignment explanation
Indices: 8202993--8203033 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
8202983 CCCCTTTTTC
8202993 TTTTTTTCTTT
1 TTTTTTTCTTT
*
8203004 TTTTTTTCCTT
1 TTTTTTTCTTT
*
8203015 TTTTTTTCTCTC
1 TTTTTTTCT-TT
8203027 TTTTTTT
1 TTTTTTT
8203034 GGATTGAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:8203010 original size:12 final size:12
Alignment explanation
Indices: 8202988--8203033 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
8202978 TGATCCCCCT
8202988 TTTTCTTTTTTTC
1 TTTT-TTTTTTTC
*
8203001 TTTTTTTTTTCC
1 TTTTTTTTTTTC
8203013 TTTTTTTTTCTCTC
1 TTTTTTTTT-T-TC
8203027 TTTTTTT
1 TTTTTTT
8203034 GGATTGAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 16 0.55
13 5 0.17
14 8 0.28
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:8205692 original size:6 final size:6
Alignment explanation
Indices: 8205679--8205710 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
8205669 AATGCAAATG
8205679 ATGC-A ATGCAA ATGCAA ATGCAA ATGCAA ATG
1 ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATG
8205711 TATGGAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
ATGCAA
Found at i:8207793 original size:6 final size:6
Alignment explanation
Indices: 8207784--8207812 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8207774 TGACAATGAT
8207784 AACGAA AACGAA AACGAA AACGAA AACGA
1 AACGAA AACGAA AACGAA AACGAA AACGA
8207813 TAACAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.17, G:0.17, T:0.00
Consensus pattern (6 bp):
AACGAA
Found at i:8207821 original size:18 final size:18
Alignment explanation
Indices: 8207784--8207821 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8207774 TGACAATGAT
*
8207784 AACGAAAACGAAAACGAA
1 AACGAAAACGAAAACAAA
*
8207802 AACGAAAACGATAACAAA
1 AACGAAAACGAAAACAAA
8207820 AA
1 AA
8207822 TAATAATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.68, C:0.16, G:0.13, T:0.03
Consensus pattern (18 bp):
AACGAAAACGAAAACAAA
Found at i:8208364 original size:23 final size:25
Alignment explanation
Indices: 8208338--8208387 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
8208328 TATGTACACA
8208338 ATATAC-ATAATATAT-TAAAATAT
1 ATATACAATAATATATATAAAATAT
*
8208361 ATATACATATAATATTTATAAAATAT
1 ATATACA-ATAATATATATAAAATAT
8208387 A
1 A
8208388 AAAATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 6 0.26
25 8 0.35
26 9 0.39
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (25 bp):
ATATACAATAATATATATAAAATAT
Found at i:8210392 original size:30 final size:30
Alignment explanation
Indices: 8210324--8210402 Score: 133
Period size: 29 Copynumber: 2.7 Consensus size: 30
8210314 AAATTCAACC
* *
8210324 TGTTACCCTACTGTTTAGGGAAATTCGGCT
1 TGTTACCCTACTGCTTAGGGAAATCCGGCT
8210354 TG-TACCCTACTGCTTAGGGAAATCCGGCT
1 TGTTACCCTACTGCTTAGGGAAATCCGGCT
8210383 TGTTACCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGG
8210403 GGTTGAAGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 27 0.59
30 19 0.41
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (30 bp):
TGTTACCCTACTGCTTAGGGAAATCCGGCT
Found at i:8210792 original size:44 final size:44
Alignment explanation
Indices: 8210742--8210978 Score: 171
Period size: 44 Copynumber: 5.4 Consensus size: 44
8210732 TGATCTGCTT
* * *
8210742 CCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
* **** *
8210786 CCCTACTGCTTAGGGGGTTAA-AGCTTGTTGTCTTCGATCTAT-TT-
1 CCCTACTGCTTAGGGGGTTAAGATCTT-TCAAATTC-AGCT-TGTTA
* * *
8210830 CCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAACCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
* * ** *** * *
8210873 CCCTACTGCTTAGGGGTTTAAGGTCCATCGGCTTC-GATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCT-TGTTA
* * * *
8210917 CCCTACTGCTTAGGGTGATAAGATC-TGCAAATTCGGCTTGTTA
1 CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
8210960 CCCTACTGCTTAGGGGGTT
1 CCCTACTGCTTAGGGGGTT
8210979 GAAGCTCGTT
Statistics
Matches: 145, Mismatches: 39, Indels: 19
0.71 0.19 0.09
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 56 0.39
44 75 0.52
45 8 0.06
46 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGATCTTTCAAATTCAGCTTGTTA
Found at i:8210908 original size:87 final size:87
Alignment explanation
Indices: 8210740--8211324 Score: 450
Period size: 87 Copynumber: 6.7 Consensus size: 87
8210730 TTTGATCTGC
* * *
8210740 TTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTT
1 TTCCCTACTGCTTAGGGGGATAAGATCTGT-AAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT
* * *
8210805 AAAG-CTTGTTGTCTTCGATCTAT
65 AAGGTC-CGTCGTCTTCGATCTAT
* * *
8210828 TTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTA
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
* * *
8210893 AGGTCCATCGGCTTCGATCTGT
66 AGGTCCGTCGTCTTCGATCTAT
* * * *
8210915 TTCCCTACTGCTTAGGGTGATAAGATCTGCAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTG
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT-
* ** *
8210980 AAGCT-CGTTATCTTCGATCTGT
65 AAGGTCCGTCGTCTTCGATCTAT
* * * ** * * ** ***
8211002 TTCCTTGCTGCTTAGGGGG-TAAGATTTGTAAATCTTCAATCTGCTT-CACTGCAACTTCAGCAA
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAA--TTCAGCCTG-TTACCCTACTGCTT-AGGGG
** * * * ** *
8211065 GACAAGATTCGCCGGATTTGAT-T-T
62 GTTAAGGTCCGTCGTCTTCGATCTAT
* ** * * * * *
8211089 GTTCCACTGCAACTTCAGGGAGACAAGATCTGTAATTTTCAGCCTATTACCCTACTGCCTAGGGG
1 -TTCC-CTACTGCTT-AGGGGGATAAGATCTGTAA-ATTCAGCCTGTTACCCTACTGCTTAGGGG
* * *
8211154 GCTAAGGCCCTTCGTCTTCGATCTA-
62 GTTAAGGTCCGTCGTCTTCGATCTAT
* * * *
8211179 CTCCACTACTGCTTAGGGAGACAAGATCTAT-AATTCAGCCTGTTACCCTACTGCTTAGGGGGTT
1 TTCC-CTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTT
* * *
8211243 AAAGCCCTTCGTCTTCGATCTAT
65 AAGGTCCGTCGTCTTCGATCTAT
* * *
8211266 TTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTA-CCTACTGCTTAGGG
1 TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGG
8211325 AGATAAGGCT
Statistics
Matches: 386, Mismatches: 94, Indels: 36
0.75 0.18 0.07
Matches are distributed among these distances:
86 95 0.25
87 150 0.39
88 69 0.18
89 44 0.11
90 18 0.05
91 10 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (87 bp):
TTCCCTACTGCTTAGGGGGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
AGGTCCGTCGTCTTCGATCTAT
Found at i:8211324 original size:42 final size:44
Alignment explanation
Indices: 8211184--8211456 Score: 141
Period size: 42 Copynumber: 6.3 Consensus size: 44
8211174 ATCTACTCCA
** * * *
8211184 CTACTGCTTAGGGAGACAAGATCTAT-AAT-TCAGCCTGTTACC
1 CTACTGCTTAGGGAGTTAAGAGCTGTAAATCTTAGCCTGTTACC
* ** *** * * * *
8211226 CTACTGCTTAGGGGGTTAA-AGCCCTTCGTCTTCGATCTATTTCC
1 CTACTGCTTAGGGAGTTAAGAGCTGTAAATCTTAG-CCTGTTACC
* * *
8211270 CTACTACTTAGGGGGTTAAGATCTGTAAAT-TTAGCCTGTTA-C
1 CTACTGCTTAGGGAGTTAAGAGCTGTAAATCTTAGCCTGTTACC
* ** *
8211312 CTACTGCTTAGGGAGATAAG-GCTTGTAAAT-TCGGCTTGTTACC
1 CTACTGCTTAGGGAGTTAAGAGC-TGTAAATCTTAGCCTGTTACC
* ** * * * * *
8211355 CTACTGCTTATGGAGTTAA-AGC-CCATCATCTTTGATCTATTTCC
1 CTACTGCTTAGGGAGTTAAGAGCTGTA-AATCTTAG-CCTGTTACC
* * *
8211399 CTACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACC
1 CTACTGCTTAGGGAGTTAAGAGCTGTAAATCTT-AGCCTGTTACC
8211444 CTACTGCTTAGGG
1 CTACTGCTTAGGG
8211457 TTTAAGGCTT
Statistics
Matches: 164, Mismatches: 54, Indels: 23
0.68 0.22 0.10
Matches are distributed among these distances:
41 5 0.03
42 52 0.32
43 28 0.17
44 48 0.29
45 29 0.18
46 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (44 bp):
CTACTGCTTAGGGAGTTAAGAGCTGTAAATCTTAGCCTGTTACC
Done.