Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 314 of 427
Found at i:91438101 original size:29 final size:29
Alignment explanation
Indices: 91438068--91438132 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
91438058 GCGACGAGGT
*
91438068 TGGCATTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
91438097 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
91438126 CGGCACT
1 TGGCACT
91438133 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:91440862 original size:58 final size:56
Alignment explanation
Indices: 91440715--91440862 Score: 147
Period size: 57 Copynumber: 2.6 Consensus size: 56
91440705 CGTTTAACAA
*
91440715 GATTACCAGTCCAGGCTAAATCCTTTTAATAACGTATGCTCTGGGGAGCTCAATTAG
1 GATTACCAGTCCAGGCTAAATCCTTTTAATAACGTATGCTC-GGAGAGCTCAATTAG
* ** * * *
91440772 GATTACCAGTCCAGGCTAAACCCTAATCATAACGTATGCTC-GAGAGGT-ATTGTATCGG
1 GATTACCAGTCCAGGCTAAATCCTTTTAATAACGTATGCTCGGAGAGCTCAAT-TA---G
* * *
91440830 GATTACCCGTCCGGGCTAAATCCTTTTTATAAC
1 GATTACCAGTCCAGGCTAAATCCTTTTAATAAC
91440863 AAGGTCAATG
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
54 2 0.03
55 7 0.09
57 37 0.50
58 28 0.38
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (56 bp):
GATTACCAGTCCAGGCTAAATCCTTTTAATAACGTATGCTCGGAGAGCTCAATTAG
Found at i:91441439 original size:20 final size:20
Alignment explanation
Indices: 91441398--91441439 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
91441388 AGCACATGTA
* *
91441398 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
91441418 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
91441438 TT
1 TT
91441440 GATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:91442127 original size:124 final size:124
Alignment explanation
Indices: 91441907--91442152 Score: 447
Period size: 124 Copynumber: 2.0 Consensus size: 124
91441897 ATAGCTATTT
*
91441907 GATCCTTATAGCTACTAGAATTTGACTTTCTCATTTTATACGATTTAGTCCTTTTCGTAATTAAA
1 GATCCTTATAGCTACTAGAATTTGAATTTCTCATTTTATACGATTTAGTCCTTTTCGTAATTAAA
91441972 CACTTAATCAATAAAATTTTCATATCAAAATTTTCACATATAATTTCTAACATATTACG
66 CACTTAATCAATAAAATTTTCATATCAAAATTTTCACATATAATTTCTAACATATTACG
* * *
91442031 GATCCTTATAGCTACTAGAATTTGAATTTCTCATTTTATGCGATTTAGTCTTTTTCGTGATTAAA
1 GATCCTTATAGCTACTAGAATTTGAATTTCTCATTTTATACGATTTAGTCCTTTTCGTAATTAAA
*
91442096 CACTTAATCAATAAAATTTTCATATCAAAATTTTCACATATCATTTCTAACATATTA
66 CACTTAATCAATAAAATTTTCATATCAAAATTTTCACATATAATTTCTAACATATTA
91442153 TGGGTCATAT
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
124 117 1.00
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (124 bp):
GATCCTTATAGCTACTAGAATTTGAATTTCTCATTTTATACGATTTAGTCCTTTTCGTAATTAAA
CACTTAATCAATAAAATTTTCATATCAAAATTTTCACATATAATTTCTAACATATTACG
Found at i:91442536 original size:35 final size:35
Alignment explanation
Indices: 91442490--91442565 Score: 143
Period size: 35 Copynumber: 2.2 Consensus size: 35
91442480 TAGGTTGAAG
91442490 CCTTGGGCGAAGTAAGAGTTGTGTTTACAAGGTAT
1 CCTTGGGCGAAGTAAGAGTTGTGTTTACAAGGTAT
91442525 CCTTGGGCGAAGTAAGAGTTGTGTTTACAAGGTAT
1 CCTTGGGCGAAGTAAGAGTTGTGTTTACAAGGTAT
*
91442560 CATTGG
1 CCTTGG
91442566 TCTTATTGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.25, C:0.12, G:0.32, T:0.32
Consensus pattern (35 bp):
CCTTGGGCGAAGTAAGAGTTGTGTTTACAAGGTAT
Found at i:91456807 original size:18 final size:17
Alignment explanation
Indices: 91456774--91456818 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
91456764 TTTATTTTTC
*
91456774 ATAAAA-AAACATAAAA
1 ATAAAATAAACACAAAA
91456790 ACTAAAATAAACACAAAA
1 A-TAAAATAAACACAAAA
91456808 ATAAACATAAA
1 ATAAA-ATAAA
91456819 AATAAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 1 0.04
17 9 0.36
18 15 0.60
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (17 bp):
ATAAAATAAACACAAAA
Found at i:91456808 original size:12 final size:12
Alignment explanation
Indices: 91456779--91456823 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
91456769 TTTTCATAAA
*
91456779 AAAACATAAAAAC
1 AAAA-ATAAACAC
*
91456792 TAAAATAAACAC
1 AAAAATAAACAC
*
91456804 AAAAATAAACAT
1 AAAAATAAACAC
91456816 AAAAATAA
1 AAAAATAA
91456824 GAAAAAAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 25 0.89
13 3 0.11
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAATAAACAC
Found at i:91456842 original size:30 final size:30
Alignment explanation
Indices: 91456776--91456834 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91456766 TATTTTTCAT
* *
91456776 AAAA-AAACATAAAAACTAAAATAAACACA
1 AAAATAAACATAAAAACTAAAAAAAAAACA
91456805 AAAATAAACATAAAAA-TAAGAAAAAAAACA
1 AAAATAAACATAAAAACTAA-AAAAAAAACA
91456835 CACATAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.78, C:0.10, G:0.02, T:0.10
Consensus pattern (30 bp):
AAAATAAACATAAAAACTAAAAAAAAAACA
Found at i:91457074 original size:26 final size:26
Alignment explanation
Indices: 91457036--91457087 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
91457026 AAGAAAAACA
*
91457036 AACAACAAACAAACCA-AACACAAAAT
1 AACAACAAACAAAACATAA-ACAAAAT
**
91457062 AACAACATCCAAAACATAAACAAAAT
1 AACAACAAACAAAACATAAACAAAAT
91457088 CAAAAGTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.67, C:0.25, G:0.00, T:0.08
Consensus pattern (26 bp):
AACAACAAACAAAACATAAACAAAAT
Found at i:91458932 original size:16 final size:15
Alignment explanation
Indices: 91458910--91458958 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
91458900 ACCCAAAGAG
91458910 AGAGAGAAAAAGAAA
1 AGAGAGAAAAAGAAA
* *
91458925 TTGAGAGAAATAGAAA
1 -AGAGAGAAAAAGAAA
91458941 AGAGA-AAAAAG-AA
1 AGAGAGAAAAAGAAA
91458954 AGAGA
1 AGAGA
91458959 AAGAGGATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 7 0.24
14 5 0.17
15 4 0.14
16 13 0.45
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (15 bp):
AGAGAGAAAAAGAAA
Found at i:91468442 original size:9 final size:9
Alignment explanation
Indices: 91468394--91468443 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
91468384 ATTTAAATTT
91468394 AATTATA-A
1 AATTATATA
91468402 AA-TATATA
1 AATTATATA
* *
91468410 AATAATAAA
1 AATTATATA
91468419 AATTATATA
1 AATTATATA
**
91468428 TTTTATATA
1 AATTATATA
91468437 AATTATA
1 AATTATA
91468444 AAAAATAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
7 4 0.12
8 5 0.16
9 23 0.72
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATTATATA
Found at i:91468461 original size:27 final size:27
Alignment explanation
Indices: 91468404--91468461 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
91468394 AATTATAAAA
* * * **
91468404 TATATAAATAATAAAAATTATATATTT
1 TATATAAATAATAAAAAATAAAAATGG
*
91468431 TATATAAATTATAAAAAATAAAAATGG
1 TATATAAATAATAAAAAATAAAAATGG
91468458 TATA
1 TATA
91468462 ATTATATAGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (27 bp):
TATATAAATAATAAAAAATAAAAATGG
Found at i:91468499 original size:7 final size:7
Alignment explanation
Indices: 91468483--91468528 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
91468473 ATTTTATTTT
91468483 ATTA-AA
1 ATTATAA
91468489 ATTATAA
1 ATTATAA
91468496 ATTATAA
1 ATTATAA
*
91468503 ATTATAT
1 ATTATAA
*
91468510 ATTA-AT
1 ATTATAA
91468516 ATTAATAA
1 ATT-ATAA
91468524 ATTAT
1 ATTAT
91468529 GTATTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 9 0.26
7 22 0.63
8 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
ATTATAA
Found at i:91468513 original size:21 final size:21
Alignment explanation
Indices: 91468489--91468533 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
91468479 TTTTATTAAA
91468489 ATTATAAATT-ATAAATTATAT
1 ATTA-AAATTAATAAATTATAT
* *
91468510 ATTAATATTAATAAATTATGT
1 ATTAAAATTAATAAATTATAT
91468531 ATT
1 ATT
91468534 TTTATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTAAAATTAATAAATTATAT
Found at i:91477222 original size:19 final size:18
Alignment explanation
Indices: 91477190--91477229 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
91477180 GTATATATTT
*
91477190 TAAATTTATTTAGGTAGA
1 TAAATTTATATAGGTAGA
91477208 TAAATCTTATATAGGTAGA
1 TAAAT-TTATATAGGTAGA
91477227 TAA
1 TAA
91477230 GTTTTATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (18 bp):
TAAATTTATATAGGTAGA
Found at i:91477236 original size:19 final size:19
Alignment explanation
Indices: 91477190--91477236 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
91477180 GTATATATTT
*
91477190 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATATAGGTAGA
*
91477208 TAAATCTTATATAGGTAGA
1 TAAATTTTATATAGGTAGA
*
91477227 TAAGTTTTAT
1 TAAATTTTAT
91477237 TCATATTCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (19 bp):
TAAATTTTATATAGGTAGA
Found at i:91477297 original size:42 final size:42
Alignment explanation
Indices: 91477246--91477340 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
91477236 TTCATATTCT
** *
91477246 AGGAA-TATTTTATTTTATCTTTTAGTAGTTTATTAAAATAA
1 AGGAACTATTTTACCTTATCTTTCAGTAGTTTATTAAAATAA
* * *
91477287 AGGAACTATTTTCCCTTATGTTTCAGTAGTTTATTAGAATAA
1 AGGAACTATTTTACCTTATCTTTCAGTAGTTTATTAAAATAA
*
91477329 GGGAACTATTTT
1 AGGAACTATTTT
91477341 CCCAATTAGG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 5 0.11
42 41 0.89
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.46
Consensus pattern (42 bp):
AGGAACTATTTTACCTTATCTTTCAGTAGTTTATTAAAATAA
Found at i:91477341 original size:42 final size:42
Alignment explanation
Indices: 91477260--91477343 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
91477250 ATATTTTATT
*
91477260 TTATCTTTTAGTAGTTTATTAAAATAAAGGAACTATTTTCCC
1 TTATCTTTCAGTAGTTTATTAAAATAAAGGAACTATTTTCCC
* * *
91477302 TTATGTTTCAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTCAGTAGTTTATTAAAATAAAGGAACTATTTTCCC
91477344 AATTAGGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (42 bp):
TTATCTTTCAGTAGTTTATTAAAATAAAGGAACTATTTTCCC
Found at i:91481943 original size:19 final size:19
Alignment explanation
Indices: 91481897--91481944 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
91481887 GTATATATTT
91481897 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
91481915 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
91481934 TAAGTTTTATT
1 TAAATTTTATT
91481945 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:91484268 original size:16 final size:16
Alignment explanation
Indices: 91484247--91484281 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
91484237 GGTTTACTGG
*
91484247 AATGGAATAGGGCTGT
1 AATGGAATAGAGCTGT
91484263 AATGGAATAGAGCTGT
1 AATGGAATAGAGCTGT
91484279 AAT
1 AAT
91484282 CAATAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.31, T:0.26
Consensus pattern (16 bp):
AATGGAATAGAGCTGT
Found at i:91484495 original size:11 final size:11
Alignment explanation
Indices: 91484481--91484541 Score: 52
Period size: 11 Copynumber: 5.1 Consensus size: 11
91484471 AAATAAAATA
91484481 AATATTTTAAT
1 AATATTTTAAT
91484492 AATATTTTAAT
1 AATATTTTAAT
91484503 ATATTTATTATTAA-
1 A-A--TATT-TTAAT
*
91484517 ATATAATTTAAT
1 A-ATATTTTAAT
91484529 AATATTCTTAAT
1 AATATT-TTAAT
91484541 A
1 A
91484542 TAATTATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
11 20 0.48
12 11 0.26
14 7 0.17
15 4 0.10
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
AATATTTTAAT
Found at i:91484549 original size:38 final size:35
Alignment explanation
Indices: 91484479--91484549 Score: 106
Period size: 38 Copynumber: 1.9 Consensus size: 35
91484469 AAAAATAAAA
*
91484479 TAAATATTTTAATAATATTTTAATATATTTATTAT
1 TAAATATTTTAATAATATTTTAATATAATTATTAT
91484514 TAAATATAATTTAATAATATTCTTAATATAATTATT
1 TAAATAT--TTTAATAATATT-TTAATATAATTATT
91484550 TTTATATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 7 0.22
37 12 0.38
38 13 0.41
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (35 bp):
TAAATATTTTAATAATATTTTAATATAATTATTAT
Found at i:91487693 original size:12 final size:12
Alignment explanation
Indices: 91487676--91487701 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91487666 AAAACAGGTC
91487676 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91487688 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91487700 TT
1 TT
91487702 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:91487829 original size:41 final size:41
Alignment explanation
Indices: 91487725--91487933 Score: 300
Period size: 41 Copynumber: 5.1 Consensus size: 41
91487715 AAAACAATTG
* ***
91487725 TAAAACAT-AGAGCAATAGCAGCG-TTTTTCCAAAACGCCGC
1 TAAAA-ATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
*
91487765 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
*
91487805 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
91487846 TAAAAATAAGAGCAATA-CTGGCGCTTTTGGTAAAACGCCGC
1 TAAAAATAAGAGCAATAGC-GGCGCTTTTGGTAAAACGCCGC
* *
91487887 TAAAAATAAGAGCATTAGCGGCGCTTTTGGTAAAACGCCAC
1 TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
91487928 TAAAAA
1 TAAAAA
91487934 GTTTAGGGTT
Statistics
Matches: 155, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 15 0.10
40 26 0.17
41 113 0.73
42 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAAATAAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:91488031 original size:21 final size:21
Alignment explanation
Indices: 91488007--91488049 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
91487997 GGTTTATGTA
*
91488007 TTATGGTTTAAGGGTT-GGGGT
1 TTATGATTTAA-GGTTAGGGGT
91488028 TTATGATTTAAGGTTAGGGGT
1 TTATGATTTAAGGTTAGGGGT
91488049 T
1 T
91488050 AGGGGTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (21 bp):
TTATGATTTAAGGTTAGGGGT
Found at i:91488042 original size:28 final size:28
Alignment explanation
Indices: 91487997--91488056 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
91487987 ACTATTTTAA
*
91487997 GGTTTATGTATTATGGTTTAAGGGTT-GG
1 GGTTTATGTATTAAGG-TTAAGGGTTAGG
*
91488025 GGTTTATG-ATTTAAGGTTAGGGGTTAGG
1 GGTTTATGTA-TTAAGGTTAAGGGTTAGG
91488053 GGTT
1 GGTT
91488057 AGGGGTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 9 0.32
28 19 0.68
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.43
Consensus pattern (28 bp):
GGTTTATGTATTAAGGTTAAGGGTTAGG
Found at i:91488049 original size:7 final size:7
Alignment explanation
Indices: 91488039--91488064 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91488029 TATGATTTAA
91488039 GGTTAGG
1 GGTTAGG
91488046 GGTTAGG
1 GGTTAGG
91488053 GGTTAGG
1 GGTTAGG
91488060 GGTTA
1 GGTTA
91488065 ATACTTAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.54, T:0.31
Consensus pattern (7 bp):
GGTTAGG
Found at i:91488304 original size:21 final size:20
Alignment explanation
Indices: 91488270--91488325 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 20
91488260 TTATTTTGTG
*
91488270 GTTTATGGTTAAGGGATATA
1 GTTTAGGGTTAAGGGATATA
91488290 GTTTAGGGTTTAAGGGATATA
1 GTTTAGGG-TTAAGGGATATA
*
91488311 CTTTAGGGATTAAGG
1 GTTTAGGG-TTAAGG
91488326 TTATAGGGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 7 0.22
21 25 0.78
ACGTcount: A:0.29, C:0.02, G:0.32, T:0.38
Consensus pattern (20 bp):
GTTTAGGGTTAAGGGATATA
Found at i:91491245 original size:14 final size:13
Alignment explanation
Indices: 91491222--91491251 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
91491212 ATTACTATAA
91491222 TAATTATATGAAG
1 TAATTATATGAAG
91491235 TAATATATATGAAG
1 TAAT-TATATGAAG
91491249 TAA
1 TAA
91491252 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:91491630 original size:183 final size:183
Alignment explanation
Indices: 91491322--91491690 Score: 666
Period size: 183 Copynumber: 2.0 Consensus size: 183
91491312 GATATAGTTC
*
91491322 CATGTGTCTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
* *
91491387 ACTATTGGTTCAACTGAAGCTGCTATTTAATTTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
91491452 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* * *
91491505 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTTAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
91491570 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
* *
91491635 GTTTTTATATTTGCTTAAATTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
91491688 CAT
1 CAT
91491691 CTGTTCTAGG
Statistics
Matches: 178, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 178 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:91491911 original size:15 final size:15
Alignment explanation
Indices: 91491891--91491919 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
91491881 GGAGTAGACC
91491891 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
91491906 AGGTACGTTTTATT
1 AGGTACGTTTTATT
91491920 TCAAAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:91492645 original size:46 final size:46
Alignment explanation
Indices: 91492578--91492671 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
91492568 GAATCTTAAA
* *
91492578 AAATTCTCTGTTTTATCACAAATATTATAACTTATATAACTTAGAT
1 AAATTCTCCGTTTTATCACAAATATTATAACTTATATAACTTACAT
91492624 AAATTCTCCGTTTTATCACAAATATTATAACTTATATAACTTACAT
1 AAATTCTCCGTTTTATCACAAATATTATAACTTATATAACTTACAT
91492670 AA
1 AA
91492672 CTTATATAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.40, C:0.15, G:0.03, T:0.41
Consensus pattern (46 bp):
AAATTCTCCGTTTTATCACAAATATTATAACTTATATAACTTACAT
Found at i:91492663 original size:9 final size:9
Alignment explanation
Indices: 91492649--91492742 Score: 75
Period size: 9 Copynumber: 10.6 Consensus size: 9
91492639 TCACAAATAT
91492649 TATAACTTA
1 TATAACTTA
91492658 TATAACTTA
1 TATAACTTA
*
91492667 CATAACTTA
1 TATAACTTA
91492676 TATAACTTA
1 TATAACTTA
* *
91492685 GATAA-ATA
1 TATAACTTA
*
91492693 TATAATTTA
1 TATAACTTA
* *
91492702 CATAA-ATA
1 TATAACTTA
* *
91492710 TATATCATA
1 TATAACTTA
91492719 TCATAACTTA
1 T-ATAACTTA
*
91492729 CATAACTTA
1 TATAACTTA
*
91492738 CATAA
1 TATAA
91492743 TACTTAAATA
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
8 11 0.16
9 52 0.75
10 6 0.09
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
TATAACTTA
Found at i:91492673 original size:18 final size:18
Alignment explanation
Indices: 91492650--91492742 Score: 100
Period size: 18 Copynumber: 5.2 Consensus size: 18
91492640 CACAAATATT
91492650 ATAACTTATATAACTTAC
1 ATAACTTATATAACTTAC
*
91492668 ATAACTTATATAACTTAG
1 ATAACTTATATAACTTAC
* *
91492686 ATAA-ATATATAATTTAC
1 ATAACTTATATAACTTAC
* * *
91492703 ATAA-ATATATATCATATC
1 ATAACTTATATAACTTA-C
*
91492721 ATAACTTACATAACTTAC
1 ATAACTTATATAACTTAC
91492739 ATAA
1 ATAA
91492743 TACTTAAATA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
17 23 0.37
18 31 0.50
19 8 0.13
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
ATAACTTATATAACTTAC
Found at i:91498764 original size:43 final size:42
Alignment explanation
Indices: 91498738--91498896 Score: 246
Period size: 43 Copynumber: 3.7 Consensus size: 42
91498728 GTAAAAAAAG
*
91498738 CGCCGCTAAAAGTCTCGACCTTTAGCGGCGCTTTACCCACAAA
1 CGCCGCTAAAAGCCTCGACCTTTAGCGGCGCTTTA-CCACAAA
91498781 CGCCGCTAAAAGCCTCGACCTTTAGCGGCGCTTTACCCACAAA
1 CGCCGCTAAAAGCCTCGACCTTTAGCGGCGCTTTA-CCACAAA
* * *
91498824 CTCCGCTAAAAGCCTCGACCTTTAGCGGTGCTTTCCCCACAAA
1 CGCCGCTAAAAGCCTCGACCTTTAGCGGCGCTTT-ACCACAAA
*
91498867 CGCCACTAAAAGCCTCGACCTTTAGCGGCG
1 CGCCGCTAAAAGCCTCGACCTTTAGCGGCG
91498897 TTTTTTCCCA
Statistics
Matches: 108, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
43 108 1.00
ACGTcount: A:0.25, C:0.36, G:0.19, T:0.20
Consensus pattern (42 bp):
CGCCGCTAAAAGCCTCGACCTTTAGCGGCGCTTTACCACAAA
Found at i:91502488 original size:40 final size:40
Alignment explanation
Indices: 91502429--91502636 Score: 191
Period size: 40 Copynumber: 5.2 Consensus size: 40
91502419 CAATTGAATG
* * * *
91502429 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
91502469 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
91502509 ACATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
91502549 AAATCCGGGCTAATACCCGAAGGCTTTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
91502589 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
91502629 ATATCCGG
1 ATATCCGG
91502637 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 32, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:91502572 original size:80 final size:80
Alignment explanation
Indices: 91502430--91502636 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 80
91502420 AATTGAATGA
* * ** * ** * *
91502430 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
91502495 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* * *
91502508 TACATCCGGGCTAAGACCTGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
** *
91502573 TTTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
91502590 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
91502637 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
80 101 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:91504771 original size:21 final size:21
Alignment explanation
Indices: 91504725--91504779 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
91504715 TGATAAATCA
*
91504725 AATTTTTTT-TCCTGATTTTC
1 AATTTTTTTCTCTTGATTTTC
91504745 AATTTTTTTCTCTTGATTTTC
1 AATTTTTTTCTCTTGATTTTC
* *
91504766 AGTTTTTTCCTCTT
1 AATTTTTTTCTCTT
91504780 TAAAAAAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 9 0.29
21 22 0.71
ACGTcount: A:0.13, C:0.16, G:0.05, T:0.65
Consensus pattern (21 bp):
AATTTTTTTCTCTTGATTTTC
Found at i:91505171 original size:21 final size:21
Alignment explanation
Indices: 91505147--91505201 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
91505137 TTATCATATT
*
91505147 TATTATTAAAATAATATAAAA
1 TATTATTAAAATAAAATAAAA
* *
91505168 TATTATATAAATTAAAATTAAA
1 TATTAT-TAAAATAAAATAAAA
91505190 -ATTA-TAAAATAA
1 TATTATTAAAATAA
91505202 GTAATTGTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 7 0.24
21 10 0.34
22 12 0.41
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TATTATTAAAATAAAATAAAA
Found at i:91506536 original size:114 final size:114
Alignment explanation
Indices: 91506253--91506567 Score: 329
Period size: 114 Copynumber: 2.8 Consensus size: 114
91506243 AGTTTTAATA
* * * * * *
91506253 TTGGCCAGTAGATGACCGGCACTAAGTACATTTTTTGGGTCCCAATTCACTTTTTTTTTTTACTT
1 TTGGCAAGTAGATGGCCGACACCAAGTACATTTTTTGGCTCCCAATGCA-TTTTTTTTTTTACTT
* *
91506318 TGAGACACTAATGGCCTGCACCAGTGTCATTTTTAAAAAAAAAAATTGGGTG
65 TGAGACACTGATGGCCAGCACCAGTGTCA-TTTT-AAAAAAAAAATTGGGTG
* * * * * * * *
91506370 CTGCCCAA-TAAATGG-CTAGCACCAAGTATA-TTTTCGACTCCTAATGCA-TTTTTTTTTTACT
1 TTG-GCAAGTAGATGGCCGA-CACCAAGTACATTTTTTGGCTCCCAATGCATTTTTTTTTTTACT
* * *
91506431 TTGGGACACTGATGGCCAACACC-GATGTCA-TTT-AAAAAAAATTTGGGTG
64 TTGAGACACTGATGGCCAGCACCAG-TGTCATTTTAAAAAAAAAATTGGGTG
*
91506480 TTGGCAAGTAGATGGCCGACACCAAGTACATTTTTTGGCTCCCAATGCAATTTTTTTTTTTACTA
1 TTGGCAAGTAGATGGCCGACACCAAGTACATTTTTTGGCTCCCAATGC-ATTTTTTTTTTTACTT
*
91506545 TAAGACACTGATGGCCAGCACCA
65 TGAGACACTGATGGCCAGCACCA
91506568 CCTTTTTCAT
Statistics
Matches: 158, Mismatches: 31, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
109 3 0.02
110 33 0.21
111 16 0.10
112 4 0.03
113 33 0.21
114 37 0.23
116 14 0.09
117 16 0.10
118 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (114 bp):
TTGGCAAGTAGATGGCCGACACCAAGTACATTTTTTGGCTCCCAATGCATTTTTTTTTTTACTTT
GAGACACTGATGGCCAGCACCAGTGTCATTTTAAAAAAAAAATTGGGTG
Found at i:91506721 original size:52 final size:51
Alignment explanation
Indices: 91506630--91506731 Score: 127
Period size: 52 Copynumber: 2.0 Consensus size: 51
91506620 GGCATATCAC
* *
91506630 ATTAAAAAAATTATTTTTCCTTATTTTGGAACACTGATGGTCGGCACCAAGT
1 ATTAAAAAAATTAGTTTTCCTTATTTTGGAACAC-GATGGCCGGCACCAAGT
*
91506682 ATTAAAAAAATTAGTTTT-CTTAATTTTGGGAATCA-GATGGCCGGTACCAA
1 ATTAAAAAAATTAGTTTTCCTT-ATTTT-GGAA-CACGATGGCCGGCACCAA
91506732 TTTTATCAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
51 3 0.07
52 35 0.80
53 4 0.09
54 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (51 bp):
ATTAAAAAAATTAGTTTTCCTTATTTTGGAACACGATGGCCGGCACCAAGT
Found at i:91509322 original size:22 final size:22
Alignment explanation
Indices: 91509297--91509366 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
91509287 TTCTTATTCC
91509297 TAATTTAAAACACGTTAAATTA
1 TAATTTAAAACACGTTAAATTA
* * * *
91509319 TAATATAATATACATG-CATATT-
1 TAATTTAA-A-ACACGTTAAATTA
* *
91509341 TAATTTAAAGCACATTAAATTA
1 TAATTTAAAACACGTTAAATTA
91509363 TAAT
1 TAAT
91509367 ACAATATACA
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
20 2 0.06
21 5 0.15
22 18 0.53
23 5 0.15
24 4 0.12
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.39
Consensus pattern (22 bp):
TAATTTAAAACACGTTAAATTA
Found at i:91509346 original size:44 final size:44
Alignment explanation
Indices: 91509297--91509448 Score: 241
Period size: 44 Copynumber: 3.5 Consensus size: 44
91509287 TTCTTATTCC
* * *
91509297 TAATTTAAAACACGTTAAATTATAATATAATATACATGCATATT
1 TAATTTAAAACACATTAAATTATAATACAATATACATACATATT
*
91509341 TAATTTAAAGCACATTAAATTATAATACAATATACATACATATT
1 TAATTTAAAACACATTAAATTATAATACAATATACATACATATT
* *
91509385 TAATTTAAAACGCATTGAATTATAATACAATATACATACATATT
1 TAATTTAAAACACATTAAATTATAATACAATATACATACATATT
*
91509429 TAATTTGAAACACATTAAAT
1 TAATTTAAAACACATTAAAT
91509449 GAAATAAATT
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 98 1.00
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (44 bp):
TAATTTAAAACACATTAAATTATAATACAATATACATACATATT
Found at i:91509377 original size:22 final size:22
Alignment explanation
Indices: 91509352--91509421 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
91509342 AATTTAAAGC
91509352 ACATTAAATTATAATACAATAT
1 ACATTAAATTATAATACAATAT
** * *
91509374 ACA-TACATATT-TAATTTAAAAC
1 ACATTA-A-ATTATAATACAATAT
* *
91509396 GCATTGAATTATAATACAATAT
1 ACATTAAATTATAATACAATAT
91509418 ACAT
1 ACAT
91509422 ACATATTTAA
Statistics
Matches: 33, Mismatches: 11, Indels: 8
0.63 0.21 0.15
Matches are distributed among these distances:
21 5 0.15
22 24 0.73
23 4 0.12
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.36
Consensus pattern (22 bp):
ACATTAAATTATAATACAATAT
Found at i:91509521 original size:27 final size:25
Alignment explanation
Indices: 91509498--91509586 Score: 78
Period size: 27 Copynumber: 3.5 Consensus size: 25
91509488 ACGTAAATTA
91509498 AAATGGAAAGAAAGATAATTTAAATG
1 AAATGGAAAGAAAGAT-ATTTAAATG
* *
91509524 AAAT-G-AGGAAA-ATA-TTAAATTT
1 AAATGGAAAGAAAGATATTTAAA-TG
*
91509546 AAATGGAGAAAAAAGATGATTTAAATG
1 AAATGGA-AAGAAAGAT-ATTTAAATG
91509573 AAATGGAAATGAAA
1 AAATGGAAA-GAAA
91509587 TGAAATGAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 15
0.70 0.09 0.21
Matches are distributed among these distances:
21 5 0.10
22 6 0.12
23 3 0.06
24 5 0.10
25 5 0.10
26 8 0.16
27 12 0.24
28 5 0.10
ACGTcount: A:0.57, C:0.00, G:0.19, T:0.24
Consensus pattern (25 bp):
AAATGGAAAGAAAGATATTTAAATG
Found at i:91509845 original size:21 final size:21
Alignment explanation
Indices: 91509821--91509860 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
91509811 TTTAAATTGA
91509821 GAAAAAAATTAAACAAAATAT
1 GAAAAAAATTAAACAAAATAT
*
91509842 GAAAAAAATTAAATAAAAT
1 GAAAAAAATTAAACAAAAT
91509861 GTAATTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (21 bp):
GAAAAAAATTAAACAAAATAT
Found at i:91512019 original size:2 final size:2
Alignment explanation
Indices: 91512012--91512044 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
91512002 TTTCTAAATT
91512012 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91512045 GATTTGTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91517135 original size:50 final size:51
Alignment explanation
Indices: 91517058--91517186 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
91517048 GACCATGGCA
* *
91517058 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAACGAAAAATG
*
91517109 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAACGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAACGAAAAATG
* * *
91517159 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
91517187 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAACGAAAAATG
Found at i:91517200 original size:31 final size:31
Alignment explanation
Indices: 91517162--91517341 Score: 263
Period size: 31 Copynumber: 5.8 Consensus size: 31
91517152 ACAAATGACA
*
91517162 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91517193 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
91517224 AGTGAAAAGTGGTAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
* * * *
91517255 AATGAAAAGTGGTAGCTCCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
91517286 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
91517317 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
91517342 AAGTGACAAG
Statistics
Matches: 134, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
30 2 0.01
31 131 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:91517434 original size:47 final size:47
Alignment explanation
Indices: 91517365--91517530 Score: 166
Period size: 47 Copynumber: 3.7 Consensus size: 47
91517355 CAAGTGATTT
* * *
91517365 CTGTATAAAACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
91517412 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
91517459 C-GTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * *
91517501 -TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CTGTATAAGACCATATCTGGGATATGGCATC
91517531 ATTATGTGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
41 7 0.07
42 31 0.29
46 26 0.25
47 42 0.40
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:91517518 original size:42 final size:43
Alignment explanation
Indices: 91517460--91517574 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
91517450 TATGTGATTC
*
91517460 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
91517502 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
91517544 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
91517575 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:91520850 original size:10 final size:10
Alignment explanation
Indices: 91520835--91520861 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
91520825 TGATTGTGTT
91520835 TTGCATAACA
1 TTGCATAACA
91520845 TTGCATAACA
1 TTGCATAACA
91520855 TTGCATA
1 TTGCATA
91520862 CTAAAGGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (10 bp):
TTGCATAACA
Found at i:91525771 original size:55 final size:54
Alignment explanation
Indices: 91525711--91525873 Score: 170
Period size: 54 Copynumber: 3.0 Consensus size: 54
91525701 GAGGGGAAGA
** **
91525711 AGCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACTTTCTTAAAAA-AAAAGGGG
1 AGCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGAC-TTAATAAAAATAAAA-AAG
* * *
91525766 GGCCAAAGTAAAAACCCGCAATGGGCGA-TTTGAGAGC-TAATAAAAATAAAAAAG
1 AGCCAAAGTGAAAACCCGCAAAGGGC-ACTTTGAGA-CTTAATAAAAATAAAAAAG
* * *
91525820 AGCCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGACTCAATAAAAATGAAAAAA
1 AGCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACTTAATAAAAAT-AAAAAA
91525874 TAAAAAAGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
53 1 0.01
54 46 0.52
55 40 0.45
56 2 0.02
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (54 bp):
AGCCAAAGTGAAAACCCGCAAAGGGCACTTTGAGACTTAATAAAAATAAAAAAG
Found at i:91525887 original size:54 final size:54
Alignment explanation
Indices: 91525776--91525887 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
91525766 GGCCAAAGTA
* * ** *
91525776 AAAACCCGCAATGGGCGATTTGAGAGCTAATAAAAATAAAAAAGAGCCAAAGTG
1 AAAACCCGCAAAGAGCGATTTGAGAGCTAATAAAAATAAAAAAGAGAAAAAGAG
* *
91525830 AAAACCCGCAAAGAGCGCTTTGAGA-CTCAATAAAAATGAAAAAATA-AAAAAGAG
1 AAAACCCGCAAAGAGCGATTTGAGAGCT-AATAAAAAT-AAAAAAGAGAAAAAGAG
91525884 AAAA
1 AAAA
91525888 GGAGAGGCCA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
53 2 0.04
54 40 0.82
55 7 0.14
ACGTcount: A:0.54, C:0.14, G:0.19, T:0.13
Consensus pattern (54 bp):
AAAACCCGCAAAGAGCGATTTGAGAGCTAATAAAAATAAAAAAGAGAAAAAGAG
Found at i:91527336 original size:177 final size:176
Alignment explanation
Indices: 91527007--91527801 Score: 882
Period size: 177 Copynumber: 4.5 Consensus size: 176
91526997 TGGTGAAGTC
* * * * * *
91527007 AGATTTTATCTCCCTGAAGTTGCAGCGGAGCATATCAAAGACGATAAATCTTATCTCCATGTA-C
1 AGATCTTATCT-CCTAAAGTAGCAGCGGAGCAGATCAAAGATGGTAAATCTTATCTCCATGTATC
* * * *
91527071 TGGCAATGGAGCAAATTTAAGCCACTAACCTTATCTCTCTGAGGTAACAGGAGAGTAGGTTGAAG
65 -GGCAATGGAGCAGATTTAAGCCACTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
*
91527136 ATAGTG-GTCTTATCTTCCTGAAGTAGTAAGGAAGCAGACTAAAGATTGA
129 A-A-TGAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGA
* * * * *
91527185 AGATCTTATCTCTCT-AAGTAGTAGTGGAGCAGATCAAAGACGATAAATCTTATCTCCATGTACC
1 AGATCTTATCTC-CTAAAGTAGCAGCGGAGCAGATCAAAGATGGTAAATCTTATCTCCATGTATC
* * * *
91527249 GGCAATGGAGCAGATTTAAGTCACTAACCTTATCTCTCTGAGGTAGTAGGAGAGCATGTTGAAGA
65 GGCAATGGAGCAGATTTAAGCCACTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * *
91527314 TAGTG-GTATTATCTTCCTGAAGTAGCAAGGAAGCAGAATGAAGATTGA
130 -A-TGAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGA
* * * **
91527362 AAATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATC
1 AGATCTTATCT-CCTAAAGTAGCAGCGGAGCAGATCAAAGATGGTAAATCTTATCTCCATGTATC
* ** * * * *
91527427 GGAAATGGAATAGA-TTAAGCCACTAGCCTTATCTCTCTAAAGTAGCAAGAGAGTAGGTTGAAGA
65 GGCAATGGAGCAGATTTAAGCCACTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * *
91527491 ATGAGTCTTATCTTTCTGAGGTAGTAAGAAAGCAGACTAAAGATTGA
130 ATGAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGA
* *
91527538 AGATCTTATCTCCTTGAAGTTGCAGCGGAGCAGATCAAAGATGGTAAATCTTATCTCCATGTATC
1 AGATCTTATCTCC-TAAAGTAGCAGCGGAGCAGATCAAAGATGGTAAATCTTATCTCCATGTATC
* * * *
91527603 GGTAATGGAGCAAATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
65 GGCAATGGAGCAGATTTAAGCCACTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * * * * * *
91527668 ATGAGTCTTCTATTTCTGAGGTAGCAAGGAAGCGGACTGAAGATTAA
130 ATGAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGA
* * * ** * * * ** * *
91527715 AGATTTTATTTCCTCAAGTAGTGGTGGAACAGATCGAAGATGGCGAATCTTATCTCTA-GATATT
1 AGATCTTATCTCCTAAAGTAGCAGCGGAGCAGATCAAAGATGGTAAATCTTATCTCCATG-TATC
91527779 GGCAATGGAGCAGATTTAAGCCA
65 GGCAATGGAGCAGATTTAAGCCA
91527802 GTCCTATTTC
Statistics
Matches: 531, Mismatches: 78, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
175 5 0.01
176 163 0.31
177 298 0.56
178 65 0.12
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (176 bp):
AGATCTTATCTCCTAAAGTAGCAGCGGAGCAGATCAAAGATGGTAAATCTTATCTCCATGTATCG
GCAATGGAGCAGATTTAAGCCACTAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAA
TGAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGA
Found at i:91534022 original size:90 final size:89
Alignment explanation
Indices: 91533870--91534194 Score: 490
Period size: 90 Copynumber: 3.6 Consensus size: 89
91533860 ATTCTAGAAT
* * * * * *
91533870 ATTAATACACAAAAATATAAAATTCAAAC-AAAAATAATATGCACTAAATTAAATTTAAACACCC
1 ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
91533934 AACAAACTACAAACAGATAGGTAAA
66 AACAAACTACAAACAGAT-GGTAAA
91533959 ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
1 ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
*
91534024 AACAAACTACAAACAGATGGAAAAA
66 AACAAACTACAAACAGATGG-TAAA
* * * * *
91534049 ATTAGTGCACAAAATTTTTAAATTCAAACTATATATAATACAGACTAAATTAAATTTAAACACCC
1 ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
*
91534114 AACAAACTATAAACAGATTGGTAAA
66 AACAAACTACAAACAGA-TGGTAAA
*
91534139 ATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATT
1 ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATT
91534195 AACAGATACA
Statistics
Matches: 213, Mismatches: 20, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
89 29 0.14
90 181 0.85
91 3 0.01
ACGTcount: A:0.54, C:0.15, G:0.06, T:0.26
Consensus pattern (89 bp):
ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACTAAATTAAATTTAAACACCC
AACAAACTACAAACAGATGGTAAA
Found at i:91534283 original size:180 final size:176
Alignment explanation
Indices: 91533827--91534286 Score: 541
Period size: 180 Copynumber: 2.6 Consensus size: 176
91533817 AGTACACAAC
* *
91533827 AAATTAAATTTACAGATACAATAAAATACAAACATTCT-AGAATATTAATACACAAAAATATAAA
1 AAATTAAATTAACAGATACAAAAAAATACAAACATTCTAAGAA-ATTAATACAC-AAAATATAAA
*
91533891 ATTCAAAC-AAAAATAATATGC-ACTAAATTAAATTTAAACACCCAACAAACTACAAACAGATAG
64 ATTCAAACTAAATATAA-A--CAACTAAATTAAATTTAAACACCCAACAAACTACAAACAGATAG
91533954 GTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACT
126 GTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACT
* ** * * * ** * * * * *
91534005 AAATTAAATTTAA-ACACCCAACAAACTACAAACAGATGGAAAAAATTAGTGCACAAAATTTTTA
1 AAATTAAA-TTAACAGATACAAAAAAATACAAACA-TTCTAAGAAATTAATACACAAAA-TATAA
* * *
91534069 AATTCAAACTATATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTATAAACAGATTG
63 AATTCAAACTAAATATAA-ACA-ACTAAATTAAATTTAAACACCCAACAAACTACAAACAGATAG
*
91534134 GTAAAATTAATACACGAAAATTTTAAATTCAAACTACATATAATACGGACT
126 GTAAAATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACT
*
91534185 AAATTAAATTAACAGATACAAAAAAATACAAATATTCTAAGAAATTAATACACGAAAATATAAAA
1 AAATTAAATTAACAGATACAAAAAAATACAAACATTCTAAGAAATTAATACAC-AAAATATAAAA
* * * *
91534250 ATGAAACCTTAAATCCTAAACAACTACATTAAATTTA
65 TTCAAA-C-TAAAT-ATAAACAACTAAATTAAATTTA
91534287 TAGATATAAA
Statistics
Matches: 232, Mismatches: 38, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
178 29 0.12
179 50 0.22
180 143 0.62
181 7 0.03
182 3 0.01
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.26
Consensus pattern (176 bp):
AAATTAAATTAACAGATACAAAAAAATACAAACATTCTAAGAAATTAATACACAAAATATAAAAT
TCAAACTAAATATAAACAACTAAATTAAATTTAAACACCCAACAAACTACAAACAGATAGGTAAA
ATTAATACACAAAAATTTTAAATTCAAACTACATATAATACGGACT
Found at i:91535004 original size:70 final size:71
Alignment explanation
Indices: 91534929--91535074 Score: 258
Period size: 71 Copynumber: 2.1 Consensus size: 71
91534919 ATGGCGCTGG
91534929 CCATCAGTGTCCCAAAGTAAAAAT-AAAAATAAAAAGTGCATTGAGAGACGAAAAATGTACTTAG
1 CCATCAGTGTCCCAAAGTAAAAATAAAAAATAAAAAGTGCATTGAGAGACGAAAAATGTACTTAG
91534993 TACCGA
66 TACCGA
*
91534999 CCATCAGTGTCCCAAAGTAAAAATAAAAAATAAAAAGTGCATTGAGAGCCGAAAAATGTACTTAG
1 CCATCAGTGTCCCAAAGTAAAAATAAAAAATAAAAAGTGCATTGAGAGACGAAAAATGTACTTAG
* *
91535064 TGCCGG
66 TACCGA
91535070 CCATC
1 CCATC
91535075 TACTGACTAG
Statistics
Matches: 72, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
70 24 0.33
71 48 0.67
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (71 bp):
CCATCAGTGTCCCAAAGTAAAAATAAAAAATAAAAAGTGCATTGAGAGACGAAAAATGTACTTAG
TACCGA
Found at i:91539755 original size:24 final size:25
Alignment explanation
Indices: 91539710--91539765 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 25
91539700 ACCGTCTTAG
*
91539710 AAAAATTTTAAAAATCTAAAATA-A
1 AAAAATCTTAAAAATCTAAAATACA
*
91539734 AAAAATCTTAAAGAT-TATAAATACA
1 AAAAATCTTAAAAATCTA-AAATACA
91539759 AATAAAT
1 AA-AAAT
91539766 AACAATATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 18 0.67
25 3 0.11
26 4 0.15
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAAATCTTAAAAATCTAAAATACA
Found at i:91544735 original size:59 final size:59
Alignment explanation
Indices: 91544636--91544774 Score: 233
Period size: 59 Copynumber: 2.4 Consensus size: 59
91544626 TGTTGTTGTT
* *
91544636 TACAAATTGCTTAACACTTGGTATACATGGCTGCTGGTTAGAAAAGATAACAATTGATA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
* * *
91544695 TATAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAGTTGGTA
1 TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
91544754 TACAAATTGCTTAACAGTTGG
1 TACAAATTGCTTAACAGTTGG
91544775 ATAACAAATA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
59 74 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (59 bp):
TACAAATTGCTTAACAGTTGGTATACATGGCTGCTAGTTAGAAAAGATAACAATTGATA
Found at i:91545972 original size:40 final size:41
Alignment explanation
Indices: 91545912--91546019 Score: 141
Period size: 40 Copynumber: 2.6 Consensus size: 41
91545902 ATATTATAAA
91545912 AAAACTCATTGCATGCATATTAAAAAATAGGCAACA-C-GCC
1 AAAA-TCATTGCATGCATATTAAAAAATAGGCAACAGCTGCC
* *
91545952 AACAATCATTGCATGCATATT-AAAAATAGTCAACAGCTTTCC
1 AA-AATCATTGCATGCATATTAAAAAATAGGCAACAGC-TGCC
*
91545994 AAAATCATTGCATACATATTAAAAAA
1 AAAATCATTGCATGCATATTAAAAAA
91546020 AGTCAATAGC
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
39 13 0.22
40 19 0.32
41 19 0.32
42 9 0.15
ACGTcount: A:0.46, C:0.19, G:0.09, T:0.25
Consensus pattern (41 bp):
AAAATCATTGCATGCATATTAAAAAATAGGCAACAGCTGCC
Found at i:91546012 original size:41 final size:42
Alignment explanation
Indices: 91545917--91546049 Score: 166
Period size: 41 Copynumber: 3.2 Consensus size: 42
91545907 ATAAAAAAAC
* *
91545917 TCATTGCATGCATATTAAAAAATAGGCAACA-C--GCCAACAA
1 TCATTGCATGCATATT-AAAAATAGTCAACAGCTTTCCAACAA
91545957 TCATTGCATGCATATTAAAAATAGTCAACAGCTTTCCAA-AA
1 TCATTGCATGCATATTAAAAATAGTCAACAGCTTTCCAACAA
* * * *
91545998 TCATTGCATACATATTAAAAAAAGTCAATAGCTTTCTAACAA
1 TCATTGCATGCATATTAAAAATAGTCAACAGCTTTCCAACAA
*
91546040 TCAGTGCATG
1 TCATTGCATG
91546050 TGATCAGCAA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 13 0.16
40 17 0.21
41 37 0.46
42 14 0.17
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.27
Consensus pattern (42 bp):
TCATTGCATGCATATTAAAAATAGTCAACAGCTTTCCAACAA
Found at i:91547713 original size:15 final size:15
Alignment explanation
Indices: 91547693--91547721 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
91547683 ATGCATCACT
91547693 ATCACTACCAGACAC
1 ATCACTACCAGACAC
91547708 ATCACTACCAGACA
1 ATCACTACCAGACA
91547722 TGTTTTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.38, G:0.07, T:0.14
Consensus pattern (15 bp):
ATCACTACCAGACAC
Found at i:91548013 original size:9 final size:9
Alignment explanation
Indices: 91547999--91548028 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
91547989 ATAATGCTAG
91547999 ATATACACA
1 ATATACACA
91548008 ATATACACA
1 ATATACACA
91548017 ATATACACA
1 ATATACACA
91548026 ATA
1 ATA
91548029 AACATCATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (9 bp):
ATATACACA
Found at i:91548127 original size:26 final size:26
Alignment explanation
Indices: 91548051--91548128 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
91548041 GATATACATA
91548051 ATACACATCAGTTTGATAATGCATTC
1 ATACACATCAGTTTGATAATGCATTC
*** *
91548077 ATACA-AT--GGCAGAT-ATACA--C
1 ATACACATCAGTTTGATAATGCATTC
91548097 AATACACATCAGTTTGATAATGCATTC
1 -ATACACATCAGTTTGATAATGCATTC
91548124 ATACA
1 ATACA
91548129 ATGACAGATA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
20 1 0.03
21 5 0.14
22 6 0.16
23 4 0.11
24 4 0.11
25 6 0.16
26 10 0.27
27 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (26 bp):
ATACACATCAGTTTGATAATGCATTC
Found at i:91548194 original size:48 final size:47
Alignment explanation
Indices: 91548035--91548202 Score: 246
Period size: 47 Copynumber: 3.6 Consensus size: 47
91548025 AATAAACATC
* *
91548035 ATGGAAGATATACATAATACACATCAGTTTGATAATGCATTCATACA
1 ATGGCAGATATACACAATACACATCAGTTTGATAATGCATTCATACA
91548082 ATGGCAGATATACACAATACACATCAGTTTGATAATGCATTCATACA
1 ATGGCAGATATACACAATACACATCAGTTTGATAATGCATTCATACA
* * *
91548129 ATGACAGATATACACAATACGCATCAATTTGATAATAGCATTCATACA
1 ATGGCAGATATACACAATACACATCAGTTTGATAAT-GCATTCATACA
* * * *
91548177 ATGGCAGAAACAAACAATAAACATCA
1 ATGGCAGATATACACAATACACATCA
91548203 TGCACATGGC
Statistics
Matches: 109, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 78 0.72
48 31 0.28
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.26
Consensus pattern (47 bp):
ATGGCAGATATACACAATACACATCAGTTTGATAATGCATTCATACA
Found at i:91548266 original size:6 final size:6
Alignment explanation
Indices: 91548257--91548322 Score: 60
Period size: 6 Copynumber: 11.0 Consensus size: 6
91548247 ATCCAGATCG
* * * * * ** *
91548257 AAATCA AAATCA AATTCT AAATCT AAATCG AGATCA AAATTG GAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
91548305 AAATCA AAATCA AAATCA
1 AAATCA AAATCA AAATCA
91548323 GTGAGTGTTT
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.56, C:0.15, G:0.06, T:0.23
Consensus pattern (6 bp):
AAATCA
Found at i:91548349 original size:12 final size:12
Alignment explanation
Indices: 91548332--91548386 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
91548322 AGTGAGTGTT
*
91548332 TTAAAATTGAAA
1 TTAAAATCGAAA
91548344 TTAAAATCGAAA
1 TTAAAATCGAAA
* *
91548356 TCAAAATCAAAA
1 TTAAAATCGAAA
* *
91548368 TCAGAATCGAAA
1 TTAAAATCGAAA
91548380 TTAAAAT
1 TTAAAAT
91548387 TGAATTAGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.58, C:0.09, G:0.07, T:0.25
Consensus pattern (12 bp):
TTAAAATCGAAA
Found at i:91548356 original size:18 final size:17
Alignment explanation
Indices: 91548335--91548386 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
91548325 GAGTGTTTTA
*
91548335 AAATTGAAATTAAAATC
1 AAATCGAAATTAAAATC
* *
91548352 GAAATCAAAATCAAAATC
1 -AAATCGAAATTAAAATC
91548370 AGAATCGAAATTAAAAT
1 A-AATCGAAATTAAAAT
91548387 TGAATTAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
17 1 0.04
18 27 0.96
ACGTcount: A:0.60, C:0.10, G:0.08, T:0.23
Consensus pattern (17 bp):
AAATCGAAATTAAAATC
Found at i:91548858 original size:21 final size:21
Alignment explanation
Indices: 91548834--91548873 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
91548824 AACATGGTAA
91548834 GTTAACTTGCCACATCAGCTG
1 GTTAACTTGCCACATCAGCTG
*
91548855 GTTAACTTGCCACGTCAGC
1 GTTAACTTGCCACATCAGC
91548874 AATCCCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (21 bp):
GTTAACTTGCCACATCAGCTG
Found at i:91549477 original size:2 final size:2
Alignment explanation
Indices: 91549472--91549509 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
91549462 TCTCTCTCTT
91549472 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91549510 ATGTTTGCTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91550089 original size:2 final size:2
Alignment explanation
Indices: 91550077--91550119 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
91550067 CCAAAAGTTA
*
91550077 GT GT GT TT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
91550119 G
1 G
91550120 CAGTACTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
GT
Found at i:91551629 original size:31 final size:31
Alignment explanation
Indices: 91551594--91551662 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
91551584 ATTTTGTAGT
91551594 ACAACTATCATACACCATACTTAGAACAACA
1 ACAACTATCATACACCATACTTAGAACAACA
91551625 ACAACTATCATACACCATACTTAGAACAACA
1 ACAACTATCATACACCATACTTAGAACAACA
91551656 ACAACTA
1 ACAACTA
91551663 CTACTAGTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.49, C:0.29, G:0.03, T:0.19
Consensus pattern (31 bp):
ACAACTATCATACACCATACTTAGAACAACA
Found at i:91553607 original size:75 final size:75
Alignment explanation
Indices: 91553484--91553635 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
91553474 CCATGTGATG
91553484 AATTAGATAGCATTGTTTCAAAATTCTGGTGGTAGAAGGGACAAGAAAGAGGGGAATTCATTGGT
1 AATTAGATAGCATTGTTTCAAAATTCTGGTGGTAGAAGGGACAAGAAAGAGGGGAATTCATTGGT
91553549 GCATTTGGAA
66 GCATTTGGAA
91553559 AATTAGATAGCATTGTTTCAAAATTCTGGTGGTAGAAGGGACAAGAAAGAGGGGAATTCATTGGT
1 AATTAGATAGCATTGTTTCAAAATTCTGGTGGTAGAAGGGACAAGAAAGAGGGGAATTCATTGGT
91553624 GCATTTGGAA
66 GCATTTGGAA
91553634 AA
1 AA
91553636 ACCTTTGTTT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.36, C:0.08, G:0.29, T:0.28
Consensus pattern (75 bp):
AATTAGATAGCATTGTTTCAAAATTCTGGTGGTAGAAGGGACAAGAAAGAGGGGAATTCATTGGT
GCATTTGGAA
Found at i:91559539 original size:2 final size:2
Alignment explanation
Indices: 91559532--91559565 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
91559522 ATAAAAAGAA
91559532 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
91559566 GGGCAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:91564083 original size:17 final size:17
Alignment explanation
Indices: 91564061--91564096 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
91564051 ATGTAAGACT
91564061 ATGTCTAGGACATTGGC
1 ATGTCTAGGACATTGGC
91564078 ATGTCTAGGACATTGGC
1 ATGTCTAGGACATTGGC
91564095 AT
1 AT
91564097 CGTTAATCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (17 bp):
ATGTCTAGGACATTGGC
Found at i:91566754 original size:68 final size:70
Alignment explanation
Indices: 91566682--91566879 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
91566672 ACACCCTGTA
* * * *
91566682 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
91566744 ATAAAT
65 ATAAAT
*
91566750 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
91566815 ATAAAT
65 ATAAAT
*
91566821 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
91566880 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:91566793 original size:41 final size:41
Alignment explanation
Indices: 91566748--91566865 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
91566738 TGAAAGATAA
91566748 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
91566789 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91566819 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91566860 ATGTAG
1 ATGTAG
91566866 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:91566805 original size:71 final size:71
Alignment explanation
Indices: 91566716--91566879 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91566706 GAGATGTATC
91566716 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91566781 AGGACA
66 AGGACA
91566787 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91566852 AGGACA
66 AGGACA
91566858 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
91566880 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:91574323 original size:68 final size:70
Alignment explanation
Indices: 91574251--91574448 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
91574241 ACACCCTGTA
* * * *
91574251 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
91574313 ATAAAT
65 ATAAAT
*
91574319 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
91574384 ATAAAT
65 ATAAAT
*
91574390 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
91574449 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:91574362 original size:41 final size:41
Alignment explanation
Indices: 91574317--91574434 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
91574307 TGAAAGATAA
91574317 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
91574358 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91574388 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
91574429 ATGTAG
1 ATGTAG
91574435 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:91574374 original size:71 final size:71
Alignment explanation
Indices: 91574285--91574448 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91574275 GAGATGTATC
91574285 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91574350 AGGACA
66 AGGACA
91574356 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
91574421 AGGACA
66 AGGACA
91574427 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
91574449 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:91579905 original size:18 final size:18
Alignment explanation
Indices: 91579882--91579917 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
91579872 CGATGATAGC
91579882 TTGATAGTGTGATGGCGT
1 TTGATAGTGTGATGGCGT
91579900 TTGATAGTGTGATGGCGT
1 TTGATAGTGTGATGGCGT
91579918 CTCCAGTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.39, T:0.39
Consensus pattern (18 bp):
TTGATAGTGTGATGGCGT
Found at i:91581051 original size:42 final size:42
Alignment explanation
Indices: 91580947--91581057 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
91580937 TACCATATCA
* * * *
91580947 ATGCCATATCCCGGATATGGTCTTACATGAAATATCATATCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATATCATACCG
* * * *
91580989 ACGCCAT-GCCCTTGAAATGGTCTTATACGAAATCA-CATACCG
1 ATGCCATATCCC-AGATATGGTCTTATACGAAAT-ATCATACCG
91581031 ATGCCATATCCCAGATATGGTCTTATA
1 ATGCCATATCCCAGATATGGTCTTATA
91581058 TAGAATTTCG
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
41 3 0.05
42 48 0.87
43 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAATATCATACCG
Found at i:91585235 original size:28 final size:28
Alignment explanation
Indices: 91585186--91585255 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
91585176 TTTAAAACCC
* * *
91585186 TAGGGGT-ATATCGGTAATTTTGCTTTT
1 TAGGGGTAATTTCGATAATTTTGCTCTT
91585213 TAGGGGTAATTTCGATAATTTTGCTCTT
1 TAGGGGTAATTTCGATAATTTTGCTCTT
91585241 TAGGGGTAATTTCGA
1 TAGGGGTAATTTCGA
91585256 GATCTACGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 32 0.82
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTTCGATAATTTTGCTCTT
Found at i:91586357 original size:13 final size:13
Alignment explanation
Indices: 91586339--91586363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91586329 AGTTTCAGCT
91586339 AGAGAGGAAAAAA
1 AGAGAGGAAAAAA
91586352 AGAGAGGAAAAA
1 AGAGAGGAAAAA
91586364 CAACCCTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AGAGAGGAAAAAA
Found at i:91586905 original size:20 final size:20
Alignment explanation
Indices: 91586882--91586919 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
91586872 CACATCCAAA
*
91586882 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
91586902 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
91586920 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:91590981 original size:57 final size:58
Alignment explanation
Indices: 91590920--91591028 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 58
91590910 TCCTGTTTCC
* *
91590920 AACATATGCTCAAAAGAGCTTA-ATCAGGATTACCAATCCGGGCTAAATCCTATCTAT
1 AACATATGCTCAAAAGAGATTATATCAGGATTACCAATCCAGGCTAAATCCTATCTAT
* * *
91590977 AACATATGCTCAAGAGGGATTATATCAGGATTACCAGTCCAGGCTAAATCCT
1 AACATATGCTCAAAAGAGATTATATCAGGATTACCAATCCAGGCTAAATCCT
91591029 TTCTGTAATG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 19 0.41
58 27 0.59
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (58 bp):
AACATATGCTCAAAAGAGATTATATCAGGATTACCAATCCAGGCTAAATCCTATCTAT
Found at i:91603186 original size:46 final size:46
Alignment explanation
Indices: 91603134--91603309 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
91603124 TGGTTGAGCA
91603134 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* *** * * *
91603180 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACT-AGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCTAATG
* *
91603225 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* *
91603273 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91603310 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 17, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 71 0.66
47 33 0.31
48 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
Found at i:91603290 original size:93 final size:93
Alignment explanation
Indices: 91603131--91603301 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
91603121 GGATGGTTGA
* **
91603131 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
91603196 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
91603224 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
91603289 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
91603302 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:91620131 original size:55 final size:55
Alignment explanation
Indices: 91620047--91620160 Score: 183
Period size: 55 Copynumber: 2.1 Consensus size: 55
91620037 GTGCAGGGAT
* *
91620047 ACACGGTCAGACTACACGCCCGTGGGGCAGACCGTGTGTCACAGACGGCCAAGAC
1 ACACGGGCAGACTACACGCCAGTGGGGCAGACCGTGTGTCACAGACGGCCAAGAC
* * *
91620102 ACACGGGCGGACTACATGCCAGTGGGGCAGACCGTGTGTCACAGACGGCCTAGAC
1 ACACGGGCAGACTACACGCCAGTGGGGCAGACCGTGTGTCACAGACGGCCAAGAC
91620157 ACAC
1 ACAC
91620161 ACCCGTGTGT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.25, C:0.32, G:0.32, T:0.11
Consensus pattern (55 bp):
ACACGGGCAGACTACACGCCAGTGGGGCAGACCGTGTGTCACAGACGGCCAAGAC
Found at i:91620996 original size:48 final size:48
Alignment explanation
Indices: 91620955--91621270 Score: 305
Period size: 48 Copynumber: 6.6 Consensus size: 48
91620945 CATGCTCTAA
* * *
91620955 ACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAG
* * * * *
91621003 ACATGGTCTTACACTAGCTCTCGTCTCATTGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAG
** *
91621051 ACACAGTCTTACACTGGCTCTCATGAT-GTGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTGGCTCTCAT-ATCATGGCCGATGCCATGTCCCAG
* * * ** ** *
91621099 ACATGGTCTTACACTAG-TGCACATATTAACGCTAATGCCATGTCCTAG
1 ACATGGTCTTACACTGGCT-CTCATATCATGGCCGATGCCATGTCCCAG
* * * * *
91621147 ACATGGTCTTACACTGGCTCTCACAACATCGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAG
* * * * *
91621195 ACATCGCCTTACACTAGCTCTCATAT-AGTGGTCGATGCCATGTCCCAA
1 ACATGGTCTTACACTGGCTCTCATATCA-TGGCCGATGCCATGTCCCAG
* *
91621243 ACATGGTCTTACACTGGCACACATATCA
1 ACATGGTCTTACACTGGCTCTCATATCA
91621271 CCCAAATGTC
Statistics
Matches: 213, Mismatches: 49, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
47 4 0.02
48 206 0.97
49 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAG
Found at i:91621098 original size:96 final size:95
Alignment explanation
Indices: 91620934--91621260 Score: 345
Period size: 96 Copynumber: 3.4 Consensus size: 95
91620924 AATAGGGTGA
* * *
91620934 ATTGCCTATGCCATG-CTCTAAACATGGTCTTACACTGGCTCACATG-TCAAGGCCGATGCCATG
1 ATTGCCGATGCCATGTC-CTAAACATGGTCTTACACTGGCTCTCATGAT-ATGGCCGATGCCATG
* *
91620997 TCCCAGACATGGTCTTACACTAGCTCTCGTCT
64 TCCCAGACATGGTCTTACACTAGCTCTCATAT
* ** *
91621029 CATTGCCGATGCCATGTCCTAGACACAGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGT
1 -ATTGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATGATATGGCCGATGCCATGT
*
91621094 CCCAGACATGGTCTTACACTAG-TGCACATATT
65 CCCAGACATGGTCTTACACTAGCT-CTCATA-T
** ** * ** * * *
91621126 AACGCTAATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCACAACATCGCCGATGCCATGTT
1 ATTGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATGATATGGCCGATGCCATGTC
* * *
91621191 CCAAACATCGCCTTACACTAGCTCTCATAT
66 CCAGACATGGTCTTACACTAGCTCTCATAT
* * *
91621221 AGTGGTCGATGCCATGTCCCAAACATGGTCTTACACTGGC
1 A-TTGCCGATGCCATGTCCTAAACATGGTCTTACACTGGC
91621261 ACACATATCA
Statistics
Matches: 192, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
95 3 0.02
96 185 0.96
97 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
ATTGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATGATATGGCCGATGCCATGTC
CCAGACATGGTCTTACACTAGCTCTCATAT
Found at i:91621266 original size:144 final size:144
Alignment explanation
Indices: 91620953--91621270 Score: 401
Period size: 144 Copynumber: 2.2 Consensus size: 144
91620943 GCCATGCTCT
* * * *
91620953 AAACATGGTCTTACACTGGCTCACATGTCAAGGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 AAACATGGTCTTACACTGGCACACATATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACT
* * * * * *
91621018 AGCTCTCGTCTCATTGCCGATGCCATGTCCTAGACACAGTCTTACACTGGCTCTCATGATGTGGC
66 AGCTCTCGACACATCGCCGATGCCATGTCCTAAACACAGCCTTACACTAGCTCTCATGATGTGGC
91621083 CGATGCCATGTCCC
131 CGATGCCATGTCCC
* * ** * * *
91621097 AGACATGGTCTTACACTAGTGCACATATTAACGCTAATGCCATGTCCTAGACATGGTCTTACACT
1 AAACATGGTCTTACACTGGCACACATATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACT
*
91621162 GGCTCTC-ACAACATCGCCGATGCCATGTTCC-AAACATC-GCCTTACACTAGCTCTCAT-ATAG
66 AGCTCTCGAC-ACATCGCCGATGCCATG-TCCTAAACA-CAGCCTTACACTAGCTCTCATGAT-G
*
91621223 TGGTCGATGCCATGTCCC
127 TGGCCGATGCCATGTCCC
91621241 AAACATGGTCTTACACTGGCACACATATCA
1 AAACATGGTCTTACACTGGCACACATATCA
91621271 CCCAAATGTC
Statistics
Matches: 147, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
143 3 0.02
144 140 0.95
145 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (144 bp):
AAACATGGTCTTACACTGGCACACATATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACT
AGCTCTCGACACATCGCCGATGCCATGTCCTAAACACAGCCTTACACTAGCTCTCATGATGTGGC
CGATGCCATGTCCC
Found at i:91628562 original size:71 final size:71
Alignment explanation
Indices: 91628478--91628641 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91628468 CGATTTGTCT
91628478 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91628543 CTTTCA
66 CTTTCA
91628549 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91628614 CTTTCA
66 CTTTCA
91628620 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
91628642 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:91628679 original size:71 final size:70
Alignment explanation
Indices: 91628478--91628675 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
91628468 CGATTTGTCT
* * * *
91628478 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91628543 CTTTCA
65 CTTTCA
* * * *
91628549 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91628614 CTTTCA
65 CTTTCA
* *
91628620 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
91628676 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:91636131 original size:71 final size:71
Alignment explanation
Indices: 91636047--91636210 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
91636037 CGATTTGTCT
91636047 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91636112 CTTTCA
66 CTTTCA
91636118 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
91636183 CTTTCA
66 CTTTCA
91636189 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
91636211 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:91636248 original size:71 final size:70
Alignment explanation
Indices: 91636047--91636244 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
91636037 CGATTTGTCT
* * * *
91636047 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91636112 CTTTCA
65 CTTTCA
* * * *
91636118 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
91636183 CTTTCA
65 CTTTCA
* *
91636189 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
91636245 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:91641948 original size:99 final size:99
Alignment explanation
Indices: 91641777--91641977 Score: 393
Period size: 99 Copynumber: 2.0 Consensus size: 99
91641767 AAAATATAAA
91641777 TATAAATATAAAATCTCAAAAAATTACATGTTTGGTTAACTGATATTAAGTTATTTATTGAATTT
1 TATAAATATAAAATCTCAAAAAATTACATGTTTGGTTAACTGATATTAAGTTATTTATTGAATTT
91641842 GGTATCACGCGTAAAGTGACACCAACTCGGTTAC
66 GGTATCACGCGTAAAGTGACACCAACTCGGTTAC
91641876 TATAAATATAAAATCTCAAAAAATTACATGTTTGGTTAACTGATATTAAGTTATTTATTGAATTT
1 TATAAATATAAAATCTCAAAAAATTACATGTTTGGTTAACTGATATTAAGTTATTTATTGAATTT
*
91641941 GGTATCACGCGTAAAGTGACACCAATTCGGTTAC
66 GGTATCACGCGTAAAGTGACACCAACTCGGTTAC
91641975 TAT
1 TAT
91641978 TTAACCCTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 101 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (99 bp):
TATAAATATAAAATCTCAAAAAATTACATGTTTGGTTAACTGATATTAAGTTATTTATTGAATTT
GGTATCACGCGTAAAGTGACACCAACTCGGTTAC
Found at i:91649870 original size:21 final size:20
Alignment explanation
Indices: 91649839--91649904 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 20
91649829 ATTATTAAAA
91649839 AAATAAAAATTCTAAAGTATAT
1 AAAT-AAAATTCTAAA-TATAT
* *
91649861 AAATAAAATTATAAATATTT
1 AAATAAAATTCTAAATATAT
91649881 AAA-AAAA-TCTAAATA-AT
1 AAATAAAATTCTAAATATAT
*
91649898 ATATAAA
1 AAATAAA
91649905 CAAAATTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 3 0.08
18 10 0.26
19 4 0.11
20 7 0.18
21 10 0.26
22 4 0.11
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.32
Consensus pattern (20 bp):
AAATAAAATTCTAAATATAT
Found at i:91649909 original size:22 final size:20
Alignment explanation
Indices: 91649856--91649920 Score: 69
Period size: 22 Copynumber: 3.1 Consensus size: 20
91649846 AATTCTAAAG
*
91649856 TATATAAATAAAATTATA-AA
1 TATATAAA-AAAATTAAATAA
*
91649876 TATTTAAAAAAATCTAAATAA
1 TATATAAAAAAAT-TAAATAA
91649897 TATATAAACAAAATTAAAATAA
1 TATATAAA-AAAATT-AAATAA
91649919 TA
1 TA
91649921 ATTTTTAGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
19 5 0.13
20 10 0.26
21 10 0.26
22 13 0.34
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
TATATAAAAAAATTAAATAA
Found at i:91651828 original size:24 final size:24
Alignment explanation
Indices: 91651775--91651867 Score: 118
Period size: 24 Copynumber: 3.9 Consensus size: 24
91651765 AAGCTGATGG
*
91651775 ACAGTAAGCTC-TATTGAGCTG-AA
1 ACAGTAAGCTCTTA-CGAGCTGAAA
* *
91651798 ACGGTAAGCTCTGACGAGCTGAAA
1 ACAGTAAGCTCTTACGAGCTGAAA
*
91651822 ACAGTAAGCTCTTACGAGCTAAAA
1 ACAGTAAGCTCTTACGAGCTGAAA
*
91651846 AAAGTAAGCTCTTACGAGCTGA
1 ACAGTAAGCTCTTACGAGCTGA
91651868 TATATTGGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
23 16 0.27
24 44 0.73
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (24 bp):
ACAGTAAGCTCTTACGAGCTGAAA
Found at i:91659371 original size:49 final size:49
Alignment explanation
Indices: 91659150--91659389 Score: 279
Period size: 50 Copynumber: 4.9 Consensus size: 49
91659140 TAGCTAAGGC
* *
91659150 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA--TG-CCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * *
91659196 TATCCGGTACACATAGTAGCCTACGCTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * ** * *
91659246 TATCTGATACATGTAGTAGCCTGCACTTAGTACTACACACGTAATCAAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
91659297 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
91659346 TATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
91659390 ACTCACAATA
Statistics
Matches: 159, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
46 35 0.22
48 2 0.01
49 41 0.26
50 44 0.28
51 37 0.23
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:91659667 original size:27 final size:27
Alignment explanation
Indices: 91659637--91659690 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
91659627 CATACAACCC
* *
91659637 ATGTAATAGTAATTTAACATTCAATTT
1 ATGTAACAATAATTTAACATTCAATTT
**
91659664 ATGTAACAATAATTTGCCATTCAATTT
1 ATGTAACAATAATTTAACATTCAATTT
91659691 CACATGACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (27 bp):
ATGTAACAATAATTTAACATTCAATTT
Found at i:91661762 original size:22 final size:22
Alignment explanation
Indices: 91661737--91661779 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
91661727 GACTATGCAA
91661737 TCTGAGCTCATGAGTTATGTGG
1 TCTGAGCTCATGAGTTATGTGG
91661759 TCTGAGCTCATGAGTTATGTG
1 TCTGAGCTCATGAGTTATGTG
91661780 ACATATGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.30, T:0.37
Consensus pattern (22 bp):
TCTGAGCTCATGAGTTATGTGG
Found at i:91665370 original size:24 final size:24
Alignment explanation
Indices: 91665312--91665380 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
91665302 AGCTGATGGG
**
91665312 ACAGTAAGCTCTATTGAGCTG-AA
1 ACAGTAAGCTCTAACGAGCTGAAA
** *
91665335 ATGGTAAGCTCTAACAAGCTGAAA
1 ACAGTAAGCTCTAACGAGCTGAAA
*
91665359 ACAGTAAGCTCTTACGAGCTGA
1 ACAGTAAGCTCTAACGAGCTGA
91665381 TATATTGGTA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 16 0.44
24 20 0.56
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (24 bp):
ACAGTAAGCTCTAACGAGCTGAAA
Found at i:91667552 original size:40 final size:41
Alignment explanation
Indices: 91667507--91667612 Score: 162
Period size: 41 Copynumber: 2.6 Consensus size: 41
91667497 CAAGCACCAT
*
91667507 TGCCTTCGGGTCTTAACCCAGG-TA-TAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAACCC-GGATATTAACAACTCGCACGAA
*
91667547 TGCCTTCGGGTCTTAGCCCGGATATTAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAACCCGGATATTAACAACTCGCACGAA
*
91667588 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAACCCGGATAT
91667613 AATCACTAGC
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
39 2 0.03
40 20 0.32
41 40 0.65
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (41 bp):
TGCCTTCGGGTCTTAACCCGGATATTAACAACTCGCACGAA
Found at i:91667589 original size:41 final size:40
Alignment explanation
Indices: 91667484--91667648 Score: 183
Period size: 40 Copynumber: 4.1 Consensus size: 40
91667474 CAGAATTTAA
* ** * * *
91667484 CCGGATATAACCACAAGCACCATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
91667524 CCAGG-TATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CC-GGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
91667564 CCGGATATTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATA-TAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * *
91667605 CCGGATATAATC-ACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACGAA-TGCCTTCGGGTCTTAGC
91667645 CCGG
1 CCGG
91667649 GTATCATTCA
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
39 4 0.04
40 63 0.58
41 42 0.39
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:91668388 original size:2 final size:2
Alignment explanation
Indices: 91668381--91668410 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
91668371 ATGTGCAAAC
91668381 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91668411 GTACAAGAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:91670302 original size:21 final size:21
Alignment explanation
Indices: 91670276--91670318 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
91670266 GCAAAAGTTT
91670276 TATTTTTAATATGAATAAACC
1 TATTTTTAATATGAATAAACC
91670297 TATTTTTAATATGAATAAACC
1 TATTTTTAATATGAATAAACC
91670318 T
1 T
91670319 TGTCTCTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (21 bp):
TATTTTTAATATGAATAAACC
Found at i:91673069 original size:22 final size:22
Alignment explanation
Indices: 91673041--91673086 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
91673031 ATTTATTATA
*
91673041 ATTGGAGACTAATCATGACAAC
1 ATTGGAGACTAATCATGAAAAC
91673063 ATTGGAGACTAATCATGAAAAC
1 ATTGGAGACTAATCATGAAAAC
91673085 AT
1 AT
91673087 GAATAGATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.24
Consensus pattern (22 bp):
ATTGGAGACTAATCATGAAAAC
Found at i:91675779 original size:39 final size:39
Alignment explanation
Indices: 91675717--91675847 Score: 176
Period size: 39 Copynumber: 3.4 Consensus size: 39
91675707 TGCATGGTAT
* *
91675717 TGGAAAAATAT-CTGACTTGAAGTCCACAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
*
91675755 TGGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * * *
91675794 TGGAAATATATCTGGACTTAAAGTCCGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
91675833 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
91675848 GCTAAGTCCC
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
38 12 0.14
39 71 0.86
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:91675872 original size:39 final size:39
Alignment explanation
Indices: 91675829--91675989 Score: 245
Period size: 39 Copynumber: 4.1 Consensus size: 39
91675819 CGCAGGCTAA
**
91675829 GTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCATTC
1 GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
* *
91675868 GTGCTGGTATTATATCCGGGCTAAGTCCTGAAGGCATTC
1 GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
*
91675907 GTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTC
1 GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
91675946 GTGCT-G-ATGCTATATCCGGGCTAAGTCCCGAAGGCATTC
1 GTGCTGGAAT--TATATCCGGGCTAAGTCCCGAAGGCATTC
91675985 GTGCT
1 GTGCT
91675990 AAGTCCCGAA
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
37 2 0.02
38 1 0.01
39 112 0.97
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (39 bp):
GTGCTGGAATTATATCCGGGCTAAGTCCCGAAGGCATTC
Found at i:91675873 original size:78 final size:78
Alignment explanation
Indices: 91675717--91675951 Score: 230
Period size: 78 Copynumber: 3.0 Consensus size: 78
91675707 TGCATGGTAT
* * * *
91675717 TGGAAAAATATCT-GACTTGAAGTCCACAGGCTTTA-TGCTGGAAATATATCCGGACTTGAAGT-
1 TGGAAATATATCTGGACTT-AAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTC
* **
91675779 CCGCAGGC-TTTATGC
63 CCGAAGGCATTCGTGC
* *
91675794 TGGAAATATATCTGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCC
1 TGGAAATATATCTGGACTT-AAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCC
91675858 GAAGGCATTCGTGC
65 GAAGGCATTCGTGC
* * * * * * * *
91675872 TGGTATTATATCCGGGC-TAAGTCCTGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCC
1 TGGAAATATATCTGGACTTAAGTCC-GCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCC
91675936 GAAGGCATTCGTGC
65 GAAGGCATTCGTGC
91675950 TG
1 TG
91675952 ATGCTATATC
Statistics
Matches: 133, Mismatches: 19, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
76 10 0.08
77 28 0.21
78 95 0.71
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (78 bp):
TGGAAATATATCTGGACTTAAGTCCGCAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCG
AAGGCATTCGTGC
Found at i:91675993 original size:22 final size:22
Alignment explanation
Indices: 91675965--91676011 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
91675955 CTATATCCGG
91675965 GCTAAGTCCCGAAGGCATTCGT
1 GCTAAGTCCCGAAGGCATTCGT
91675987 GCTAAGTCCCGAAGGCATTCGT
1 GCTAAGTCCCGAAGGCATTCGT
91676009 GCT
1 GCT
91676012 GGTATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (22 bp):
GCTAAGTCCCGAAGGCATTCGT
Found at i:91683697 original size:3 final size:3
Alignment explanation
Indices: 91683689--91683743 Score: 83
Period size: 3 Copynumber: 18.3 Consensus size: 3
91683679 CTAATTTTAA
* * *
91683689 AAT AAT AAT AAT AAT AAT AAG AAT AAT AAT AAG AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91683737 AAT AAT A
1 AAT AAT A
91683744 GAATGAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:91683817 original size:12 final size:11
Alignment explanation
Indices: 91683802--91683840 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
91683792 AAAAGAAAAG
91683802 AAAAAATATAT
1 AAAAAATATAT
91683813 AAAAAAT-TAT
1 AAAAAATATAT
*
91683823 AAAAAATGAAAT
1 AAAAAAT-ATAT
91683835 AAAAAA
1 AAAAAA
91683841 AGATTAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 10 0.40
11 7 0.28
12 8 0.32
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (11 bp):
AAAAAATATAT
Found at i:91684321 original size:9 final size:9
Alignment explanation
Indices: 91684302--91684335 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
91684292 ATTGCTATAG
91684302 TAAACAATAA
1 TAAA-AATAA
*
91684312 TAATAATAA
1 TAAAAATAA
91684321 TAAAAATAA
1 TAAAAATAA
91684330 TAAAAA
1 TAAAAA
91684336 GCAAAGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 19 0.86
10 3 0.14
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (9 bp):
TAAAAATAA
Found at i:91685857 original size:177 final size:177
Alignment explanation
Indices: 91685533--91686147 Score: 768
Period size: 177 Copynumber: 3.5 Consensus size: 177
91685523 TAAGATCTCC
* * * * *
91685533 AGTCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATGAGACTACAATCTTCAGCCTGCTCCCTTA
1 AGTCATCAGTCTTCTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTG
* ** * * *
91685598 CTACCCCAGGGAGATAAGATTGGTTGCTGAAATCTGCTCCCCTACTACCTCAGGAAGATAAGATT
66 CTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTACTACCTCAGGAAGATAAGATT
*** ** ** * * *
91685663 TGTCGCTTTCGATCTGCCCCACTTCTATCCCAAGGAGAAAAAATCCG
131 CACCATTTTTAATCTGCCCCACTGCTATCTCAAGGAGACAAAATCCG
* * * *
91685710 AGTCATCAGTCTTCTCCCTTGTTACCTCAAGAAGATAATACTACAGTCTTTAGCCTGCTCCCTTG
1 AGTCATCAGTCTTCTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTG
* * * *
91685775 CTACCTTAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCTCTGCTACCTCAGGAAGAAAAGATT
66 CTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTACTACCTCAGGAAGATAAGATT
* * *
91685840 CACCATTTTTAATCTGCCCTACTGCTATCTCGAGGAGACAAAATCTG
131 CACCATTTTTAATCTGCCCCACTGCTATCTCAAGGAGACAAAATCCG
*
91685887 AGTCATCAGT-TTGCTCCCTTGCTACCTCAAAAAGATAAGACTACAATCTTCAGCCTGCTCCCTT
1 AGTCATCAGTCTT-CTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTTCAGCCTGCTCCCTT
* * *
91685951 GCTACCTCAGGGAGATAAGGCCAATGGCTAAAATCTACTCCCCTACTACCTC-GAGAAGATAAGA
65 GCTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTACTACCTCAG-GAAGATAAGA
* * *
91686015 TTCACCATTTTTTATTTGCCCCACTGCTATCTCAAGGAGACAAGATCTAC-
129 TTCACCATTTTTAATCTGCCCCACTGCTATCTCAAGGAGACAAAATC--CG
* * * *
91686065 AATCTTCAGTCTTTTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTTCAGCCTACTCCCTTG
1 AGTCATCAGTCTTCTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTG
* *
91686130 CTACCTCAAGAAGATAAG
66 CTACCTCAGGGAGATAAG
91686148 ACTACAATCT
Statistics
Matches: 376, Mismatches: 57, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
176 3 0.01
177 298 0.79
178 73 0.19
179 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (177 bp):
AGTCATCAGTCTTCTCCCTTGCTACCTCAAGAAGATAAGACTACAATCTTCAGCCTGCTCCCTTG
CTACCTCAGGGAGATAAGGCTAGTGGCTAAAATCTGCTCCCCTACTACCTCAGGAAGATAAGATT
CACCATTTTTAATCTGCCCCACTGCTATCTCAAGGAGACAAAATCCG
Found at i:91685948 original size:44 final size:44
Alignment explanation
Indices: 91685715--91686537 Score: 354
Period size: 44 Copynumber: 18.5 Consensus size: 44
91685705 ATCCGAGTCA
* * * * *
91685715 TCAGTCTTCTCCCTTGTTACCTCAAGAAGATAATACTACAGTCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* * * * * ****
91685759 TTAGCCTGCTCCCTTGCTACCTTAGGGAGATAAGGCTAGTGGCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
** * * * * *
91685803 AAAATCTGCT-CCTCTGCTACCTCAGGAAGAAAAGATTCACCATTT
1 TCAGTCTGCTCCCT-TGCTACCTCAGGAAGATAAGACT-ACAATCT
* * * * * * * *
91685848 TTAATCTG--CCCTACTGCTATCTCGAGG-AGACAAAATCT-GAGTCA
1 TCAGTCTGCTCCCT--TGCTACCTC-AGGAAGATAAGA-CTACAATCT
* **
91685892 TCAGTTTGCTCCCTTGCTACCTCAAAAAGATAAGACTACAATCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* * *
91685936 TCAGCCTGCTCCCTTGCTACCTCAGGGAGATAAGGC--CAATGGCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAAT--CT
** * * * * * * *
91685980 AAAATCTACTCCCCTACTACCTC-GAGAAGATAAGATTCACCATTTT
1 TCAGTCTGCTCCCTTGCTACCTCAG-GAAGATAAGACT-A-CAATCT
* * * * *
91686026 TTA-TTTGC-CCCACTGCTATCTCAAGG-AGACAAGATCTACAATCT
1 TCAGTCTGCTCCC-TTGCTACCTC-AGGAAGATAAGA-CTACAATCT
** *
91686070 TCAGTCTTTTCCCTTGCTACCTCAAGAAGATAAGACTACAATCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* * *
91686114 TCAGCCTACTCCCTTGCTACCTCAAGAAGATAAGACTACAATCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* * * * *****
91686158 TCAGCCTACTCCCTTGCTGCCTTA-GAGAGATAAGGA-TGGTGGCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGA-AGATAA-GACTACAATCT
** * * * *
91686202 AAAATCTGCTCCCTTGCTACCTCGGGAAGATAAGA-TTCACAGCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACA-ATCT
** * * * *
91686246 TTTGATCTGC-CCCACTGCTATCTCAAGG-AGACAAAATCTACAATCT
1 TCAG-TCTGCTCCC-TTGCTACCTC-AGGAAGATAAGA-CTACAATCT
* *
91686292 TCAGTCTGTTCCCTTGCTACCTCAGGAAGATAAGACTACAATTT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* * ****
91686336 TCAGCCTGCTCCCTTGCTACCTCA-GAGAGATAAGGCTAGTGGCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGA-AGATAAGACTACAATCT
** * * *
91686380 AAAATCTGCTCCCCTGCTACCTCAGGAAGATAAGA-TTC-ATCGT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATC-T
** * * ** * * *
91686423 CTTTGATTTGCTCCAC-TGTTATTTTAGGGAGACAAGATCTACAATCT
1 -TCAG-TCTGCTCC-CTTGCTACCTCAGGAAGATAAGA-CTACAATCT
*
91686470 TCAGTCTGCTCCCTTGCTACCTCGGGAAGATAAGACTACAATCT
1 TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
* *
91686514 TCAGCCTGCTCCTTTGCTACCTCA
1 TCAGTCTGCTCCCTTGCTACCTCA
91686538 AAGAGATAAG
Statistics
Matches: 566, Mismatches: 168, Indels: 90
0.69 0.20 0.11
Matches are distributed among these distances:
42 5 0.01
43 16 0.03
44 359 0.63
45 145 0.26
46 28 0.05
47 7 0.01
48 6 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (44 bp):
TCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGACTACAATCT
Done.