Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr11 124536837
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124536837
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 312 characters in sequence are not A, C, G, or T
File 319 of 427
Found at i:92866515 original size:27 final size:27
Alignment explanation
Indices: 92866450--92866528 Score: 77
Period size: 28 Copynumber: 2.9 Consensus size: 27
92866440 CTAATTTACA
* * *
92866450 AAATTACAAAAATACAAAAATACCCTT
1 AAATTGCAAAATTACAAAAATACCATT
*
92866477 AAATTTCAAAAATTACAAAAATACCATT
1 AAATTGC-AAAATTACAAAAATACCATT
** **
92866505 AGCTTGCAAAATTACCGAAATACC
1 AAATTGCAAAATTACAAAAATACC
92866529 CTTGGTTTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 21 0.49
28 22 0.51
ACGTcount: A:0.53, C:0.19, G:0.04, T:0.24
Consensus pattern (27 bp):
AAATTGCAAAATTACAAAAATACCATT
Found at i:92867029 original size:22 final size:22
Alignment explanation
Indices: 92866977--92867030 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
92866967 GCCAATTATT
* *
92866977 CTGATTATGGCTTTGTGCCAGC
1 CTGATTATGGCTCTGTGCCAAC
92866999 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGGCTCTGTGCCAAC
92867021 CTGATTATGG
1 CTGATTATGG
92867031 TTGTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 24 0.86
23 2 0.07
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:92867041 original size:22 final size:21
Alignment explanation
Indices: 92866977--92867041 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
92866967 GCCAATTATT
*
92866977 CTGATTATGGCTTTGTGCCAGC
1 CTGATTATGG-TTTGTGCCAAC
*
92866999 CT-ATATATGGCTCTGTGCCAAC
1 CTGAT-TATGG-TTTGTGCCAAC
*
92867021 CTGATTATGGTTGTGTACCAA
1 CTGATTATGGTT-TGTGCCAA
92867042 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 31 0.86
23 2 0.06
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (21 bp):
CTGATTATGGTTTGTGCCAAC
Found at i:92867202 original size:32 final size:32
Alignment explanation
Indices: 92867140--92867211 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 32
92867130 TACTCTAGTT
* * *
92867140 GATGGCTATGTGCCTAACATAATACAGTTACC
1 GATGGCTTTGTGCCTAAAATAAGACAGTTACC
* *
92867172 GATGGCTTTGTGCC-AATAATAAGACTGTTACT
1 GATGGCTTTGTGCCTAA-AATAAGACAGTTACC
*
92867204 GAAGGCTT
1 GATGGCTT
92867212 AAAGCTGTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 2 0.06
32 31 0.94
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (32 bp):
GATGGCTTTGTGCCTAAAATAAGACAGTTACC
Found at i:92870011 original size:21 final size:21
Alignment explanation
Indices: 92869986--92870025 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
92869976 AGAAATCCAT
92869986 TAAATA-GATAATTCAAACATA
1 TAAATATGATAATT-AAACATA
92870007 TAAATATGATAATTAAACA
1 TAAATATGATAATTAAACA
92870026 AGAATGTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (21 bp):
TAAATATGATAATTAAACATA
Found at i:92873142 original size:19 final size:19
Alignment explanation
Indices: 92873118--92873155 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
92873108 TAGTAAGATG
92873118 TTTGATTAAGTAAAATCAT
1 TTTGATTAAGTAAAATCAT
92873137 TTTGATTAAGTAAAATCAT
1 TTTGATTAAGTAAAATCAT
92873156 AACTAAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
TTTGATTAAGTAAAATCAT
Found at i:92881377 original size:21 final size:21
Alignment explanation
Indices: 92881344--92881399 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
92881334 AGATAATAGG
*
92881344 GTGAG-CTTAACAAGCTCAGT
1 GTGAGACTAAACAAGCTCAGT
92881364 GTGAGACTAAACAAGCTCAGT
1 GTGAGACTAAACAAGCTCAGT
92881385 GTGAGACTAAACAAG
1 GTGAGACTAAACAAG
92881400 TATTAAGCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.20
Consensus pattern (21 bp):
GTGAGACTAAACAAGCTCAGT
Found at i:92886345 original size:42 final size:42
Alignment explanation
Indices: 92886298--92886382 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
92886288 TTTAATGTCA
92886298 AATTATGAATTTACCCCTAACATTTTAACTTTTGTAAAATTT
1 AATTATGAATTTACCCCTAACATTTTAACTTTTGTAAAATTT
92886340 AATTATGAATTTACCCCTAACATTTTAACTTTTGTAAAATTT
1 AATTATGAATTTACCCCTAACATTTTAACTTTTGTAAAATTT
92886382 A
1 A
92886383 GTCACTAAAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.14, G:0.05, T:0.45
Consensus pattern (42 bp):
AATTATGAATTTACCCCTAACATTTTAACTTTTGTAAAATTT
Found at i:92887587 original size:33 final size:33
Alignment explanation
Indices: 92887541--92887617 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 33
92887531 TAATAAGACA
* * * *
92887541 AGCCTTGGATTTAAGAGGCTACAATGATGGGTC
1 AGCCTTAGATTTAAGAGGCTAAAAGGATAGGTC
* *
92887574 AGCCTTAGCTTTAAGAGGCTAAAAGGATAGGTG
1 AGCCTTAGATTTAAGAGGCTAAAAGGATAGGTC
92887607 AGCCTTA-ATTT
1 AGCCTTAGATTT
92887618 TAATAGGGCA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 3 0.08
33 34 0.92
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (33 bp):
AGCCTTAGATTTAAGAGGCTAAAAGGATAGGTC
Found at i:92891064 original size:40 final size:40
Alignment explanation
Indices: 92891019--92891185 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
92891009 CGGAATATAA
92891019 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
92891059 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
92891099 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
92891139 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
92891178 CCGGATAT
1 CCGGATAT
92891186 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:92891169 original size:80 final size:79
Alignment explanation
Indices: 92891019--92891185 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
92891009 CGGAATATAA
* *
92891019 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
92891084 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
92891099 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
92891161 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
92891178 CCGGATAT
1 CCGGATAT
92891186 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:92892034 original size:17 final size:19
Alignment explanation
Indices: 92892011--92892056 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
92892001 AAGAAGCATG
92892011 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
92892029 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
92892047 AATCATGCTC
1 AATCATGCTC
92892057 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:92899069 original size:40 final size:40
Alignment explanation
Indices: 92899024--92899190 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
92899014 CGGAATATAA
92899024 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
92899064 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
92899104 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
92899144 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
92899183 CCGGATAT
1 CCGGATAT
92899191 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:92899174 original size:80 final size:79
Alignment explanation
Indices: 92899024--92899190 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
92899014 CGGAATATAA
* *
92899024 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
92899089 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
92899104 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
92899166 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
92899183 CCGGATAT
1 CCGGATAT
92899191 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:92900039 original size:17 final size:19
Alignment explanation
Indices: 92900016--92900061 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
92900006 AAGAAGCATG
92900016 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
92900034 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
92900052 AATCATGCTC
1 AATCATGCTC
92900062 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:92915438 original size:2 final size:2
Alignment explanation
Indices: 92915431--92915470 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
92915421 TCAAGCCACC
92915431 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92915471 TTTTATCCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92920732 original size:50 final size:50
Alignment explanation
Indices: 92920628--92920805 Score: 191
Period size: 50 Copynumber: 3.6 Consensus size: 50
92920618 AGATACCGAC
* * * *
92920628 GCCATGTCCCAGACATGGTCTTAAACT-A-GCTCACACATCAAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCGAAGTCGAT
* * *
92920676 GCCATGTCCTAGACATTGTCTTACACTGACTCTCATATATCGAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCGAAGTCGAT
* * * * * ** *
92920726 TCCATGTCCTAGACATGGTCTTACA-TTAGCTCTCACCTGTCGGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCACATATCGAAGTCGAT
92920776 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
92920806 ACATATCACG
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
48 24 0.22
49 3 0.03
50 78 0.73
51 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCGAAGTCGAT
Found at i:92922324 original size:47 final size:45
Alignment explanation
Indices: 92922241--92922389 Score: 147
Period size: 46 Copynumber: 3.2 Consensus size: 45
92922231 CCTAGACACG
* * * *
92922241 GTCTTACATTGGCTTACATCTCAAGTCGAAGCCATGTCCTAGACAT
1 GTCTTACACTGGCTTACATCTCGAGCCGAAG-CATGTCCCAGACAT
* *
92922287 GGTCTTACACTGAC-TATCATCTCGTAGCCGACGCATGTCCCAGACAT
1 -GTCTTACACTGGCTTA-CATCTCG-AGCCGAAGCATGTCCCAGACAT
* * * * *
92922334 ATCCTACACTGGCTTACGTCTCGAGGCCGATGCATGTCCCAAACAT
1 GTCTTACACTGGCTTACATCTCGA-GCCGAAGCATGTCCCAGACAT
92922380 GTCTTACACT
1 GTCTTACACT
92922390 AGCACTCGTC
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 45 0.54
47 32 0.38
48 6 0.07
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
GTCTTACACTGGCTTACATCTCGAGCCGAAGCATGTCCCAGACAT
Found at i:92922400 original size:46 final size:46
Alignment explanation
Indices: 92922273--92922440 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 46
92922263 AAGTCGAAGC
* * * * *
92922273 CATGTCCTAGACATGGTCTTACACT-GACTATCATCTCGTA-GCCGACG
1 CATGTCCCAGACAT-GTCTTACACTAGCCTA-CGTCTC-AAGGCCGATG
* * * * *
92922320 CATGTCCCAGACATATCCTACACTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCGATG
* * *
92922366 CATGTCCCAAACATGTCTTACACTAGCACT-CGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCAAGGCCGATG
92922412 CGATGTCCCAGACATGGTCTTACACTAGC
1 C-ATGTCCCAGACAT-GTCTTACACTAGC
92922441 TCTCACAAAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 56 0.57
47 29 0.29
48 13 0.13
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAGGCCGATG
Found at i:92926539 original size:17 final size:18
Alignment explanation
Indices: 92926517--92926563 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
92926507 AAAAAATTAG
*
92926517 AATTTAGTTG-ATAAAAT
1 AATTTAATTGAATAAAAT
*
92926534 AATTTAATTGAATAAATT
1 AATTTAATTGAATAAAAT
92926552 AA-TTAATT-AATA
1 AATTTAATTGAATA
92926564 TTTTGAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 4 0.15
17 15 0.56
18 8 0.30
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (18 bp):
AATTTAATTGAATAAAAT
Found at i:92930759 original size:15 final size:15
Alignment explanation
Indices: 92930735--92930764 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92930725 TCACTATTAC
*
92930735 AATTATGGCTAAATT
1 AATTACGGCTAAATT
92930750 AATTACGGCTAAATT
1 AATTACGGCTAAATT
92930765 GCCATATGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (15 bp):
AATTACGGCTAAATT
Found at i:92937955 original size:77 final size:77
Alignment explanation
Indices: 92937865--92938195 Score: 479
Period size: 77 Copynumber: 4.3 Consensus size: 77
92937855 TAATGGAGAA
*
92937865 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCA
92937930 TTCGTGCTGGTG
66 TTCGTGCTGGTG
* * *
92937942 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTATATCCAGGCTAAGTCCCGAAGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCA
*
92938007 TTTGTGCTGGTG
66 TTCGTGCTGGTG
*
92938019 -TATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG-TATATCCGGGCTAAGTCCCGAAGGC
92938083 ATTCGTGCTGGTG
65 ATTCGTGCTGGTG
* * * *
92938096 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTATTATATCCGGGCTAAAGTCCCGCAG
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT-GTATATCCGGGCT-AAGTCCCGAAG
* *
92938160 GC-TTTGTGCTGGTA
63 GCATTCGTGCTGGTG
92938174 TTATATCCGGGCTTAAAGTCCC
1 TTATATCCGGGC-T-AAGTCCC
92938196 ACATGCTTTG
Statistics
Matches: 231, Mismatches: 17, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
76 36 0.16
77 107 0.46
78 55 0.24
79 33 0.14
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (77 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCTGGTG
Found at i:92937958 original size:39 final size:39
Alignment explanation
Indices: 92937865--92938195 Score: 483
Period size: 39 Copynumber: 8.5 Consensus size: 39
92937855 TAATGGAGAA
*
92937865 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
92937904 -TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
92937942 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
92937981 -TATATCCAGGCTAAGTCCCGAAGGTATTTGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
92938019 -TATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
92938057 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
92938096 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
* * *
92938135 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
92938174 TTATATCCGGGCTTAAAGTCCC
1 TTATATCCGGGC-T-AAGTCCC
92938196 ACATGCTTTG
Statistics
Matches: 274, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
38 105 0.38
39 148 0.54
40 21 0.08
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:92938030 original size:115 final size:115
Alignment explanation
Indices: 92937865--92938195 Score: 495
Period size: 115 Copynumber: 2.8 Consensus size: 115
92937855 TAATGGAGAA
*
92937865 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCAGGCTAAGTCCCGAAGG-ATTTGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCA
*
92937930 TTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
65 TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
92937981 -TATATCCAGGCTAAGTCCCGAAGGTATTTGTGCTGGTGTATGTCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCAGGCTAAGTCCCGAAGG-ATTTGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCA
92938045 TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
65 TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
92938096 TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTATTATATCCGGGCTAAAGTCCCGCAGG
1 TTATATCCAGGCT-AAGTCCCGAAGGATTTGTGCTGGT-GTATATCCGGGCT-AAGTCCCGAAGG
* *
92938161 C-TTTGTGCTGGTATTATATCCGGGCTTAAAGTCCC
63 CATTCGTGCTGGTGTTATATCCGGGC-T-AAGTCCC
92938196 ACATGCTTTG
Statistics
Matches: 197, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
115 111 0.56
116 22 0.11
117 44 0.22
118 13 0.07
119 7 0.04
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (115 bp):
TTATATCCAGGCTAAGTCCCGAAGGATTTGTGCTGGTGTATATCCGGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:92940041 original size:30 final size:30
Alignment explanation
Indices: 92939984--92940043 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
92939974 TTTTTCATAG
* * *
92939984 TTTTAGGTTAGGTTTTCTTTTTCCTTTTAT
1 TTTTAGATTAGGTTTCCCTTTTCCTTTTAT
*
92940014 TTTTAGATTAGGTTTACCCTTTTCTTTTTA
1 TTTTAGATTAGGTTT-CCCTTTTCCTTTTA
92940044 GAATAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.13, C:0.12, G:0.12, T:0.63
Consensus pattern (30 bp):
TTTTAGATTAGGTTTCCCTTTTCCTTTTAT
Found at i:92945484 original size:47 final size:46
Alignment explanation
Indices: 92945431--92945564 Score: 141
Period size: 46 Copynumber: 2.9 Consensus size: 46
92945421 AAGGTGGAAA
* * **
92945431 TATGTGGCAGTTTATCTACATTAATGTGACACTATTCATGATTTGAT
1 TATGTGGCAGTTTATCTGCATTATTGTGACACTATTCACAATTT-AT
*
92945478 TATGTGGCAGTATATCTGCGATT-TTGGTG--ACT-TGTCAACAATTTAT
1 TATGTGGCAGTTTATCTGC-ATTATT-GTGACACTAT-TC-ACAATTTAT
*
92945524 TATGTGGCAGTTTATCTGCATTATTATGACACTATTCACAA
1 TATGTGGCAGTTTATCTGCATTATTGTGACACTATTCACAA
92945565 ATTTGGTGTA
Statistics
Matches: 72, Mismatches: 7, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
45 6 0.08
46 31 0.43
47 28 0.39
48 7 0.10
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (46 bp):
TATGTGGCAGTTTATCTGCATTATTGTGACACTATTCACAATTTAT
Found at i:92951836 original size:73 final size:73
Alignment explanation
Indices: 92951717--92951861 Score: 254
Period size: 73 Copynumber: 2.0 Consensus size: 73
92951707 GACAAGGATG
* * *
92951717 TGTGTCAGGCCGTGTGAAAACTCCTGTAGGTTCAAATTTAGAATTTAATTCACACGGGCATGGGA
1 TGTGTCAGGCAGTGTGAAAACTCCTGTAGGTTCAAATTTAGAATTTAATTCACACGGCCACGGGA
92951782 CACGGGCA
66 CACGGGCA
*
92951790 TGTGTCAGGCAGTGTGAAAACTCCTGTAGGTTCAAATTTAGAATTTAATTCCCACGGCCACGGGA
1 TGTGTCAGGCAGTGTGAAAACTCCTGTAGGTTCAAATTTAGAATTTAATTCACACGGCCACGGGA
92951855 CACGGGC
66 CACGGGC
92951862 GTGTCCCTAG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (73 bp):
TGTGTCAGGCAGTGTGAAAACTCCTGTAGGTTCAAATTTAGAATTTAATTCACACGGCCACGGGA
CACGGGCA
Found at i:92957395 original size:20 final size:21
Alignment explanation
Indices: 92957357--92957395 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
92957347 TTATAATGAC
92957357 CACACGGGCGTGTTGCCCTTT
1 CACACGGGCGTGTTGCCCTTT
*
92957378 CACATGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
92957396 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.33, G:0.31, T:0.26
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTT
Found at i:92961951 original size:16 final size:17
Alignment explanation
Indices: 92961931--92961963 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
92961921 CAAAACGACA
92961931 AAAAATGAAAAA-AAAAC
1 AAAAA-GAAAAAGAAAAC
92961948 AAAAAGAAAAAGAAAA
1 AAAAAGAAAAAGAAAA
92961964 ATTAAATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.85, C:0.03, G:0.09, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAC
Found at i:92964313 original size:43 final size:43
Alignment explanation
Indices: 92964183--92964340 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
92964173 TTTTGATGTG
* * ***
92964183 TGATTTTGTGTAAGATCGTGTCTGGGATGTTGGCATCGAT-TT
1 TGATTTTGTGTAAGACCATGTCTGGGACAATGGCATCGATATT
* *
92964225 GAGATTTATGTGTAAGACCATGTCTGGGAC-ATCGGCTTCG-TATT
1 -TGATTT-TGTGTAAGACCATGTCTGGGACAAT-GGCATCGATATT
92964269 TGATTTTGTGTAAGACCATGTCTGGGACAATGGCATCGATATT
1 TGATTTTGTGTAAGACCATGTCTGGGACAATGGCATCGATATT
*** *
92964312 TGATTACATGTAAGACCACGTCTGGGACA
1 TGATTTTGTGTAAGACCATGTCTGGGACA
92964341 TTGGTATTGT
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.29
43 43 0.44
44 27 0.28
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (43 bp):
TGATTTTGTGTAAGACCATGTCTGGGACAATGGCATCGATATT
Found at i:92970745 original size:35 final size:35
Alignment explanation
Indices: 92970699--92970768 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
92970689 ACAAATCTGA
92970699 GTCAGAAAAATATTTTAATATTATTTTTCGTACTT
1 GTCAGAAAAATATTTTAATATTATTTTTCGTACTT
92970734 GTCAGAAAAATATTTTAATATTATTTTTCGTACTT
1 GTCAGAAAAATATTTTAATATTATTTTTCGTACTT
92970769 ATTGTGTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (35 bp):
GTCAGAAAAATATTTTAATATTATTTTTCGTACTT
Found at i:92971528 original size:42 final size:43
Alignment explanation
Indices: 92971470--92971570 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
92971460 ATCGATTTGA
* *
92971470 GATTTACGTGTAAGACCATATCTGAGACATCGGTATC-ATATTT
1 GATTT-CGTGTAAGACCATATCTGAGACAGCGGCATCAATATTT
* *
92971513 GATTTCGTGTAAGACCATGTCTGGGACAGCGGCATCAATATTT
1 GATTTCGTGTAAGACCATATCTGAGACAGCGGCATCAATATTT
* *
92971556 GATTACATGTAAGAC
1 GATTTCGTGTAAGAC
92971571 TACGTCTAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 27 0.53
43 24 0.47
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATATCTGAGACAGCGGCATCAATATTT
Found at i:92971590 original size:43 final size:43
Alignment explanation
Indices: 92971473--92971582 Score: 107
Period size: 43 Copynumber: 2.6 Consensus size: 43
92971463 GATTTGAGAT
* ** * *
92971473 TTACGTGTAAGACCATATCT-GAGACATCGGTATC-ATATTTGA
1 TTACATGTAAGACCACGTCTAG-GACAGCGGCATCAATATTTGA
* * * *
92971515 TTTCGTGTAAGACCATGTCTGGGACAGCGGCATCAATATTTGA
1 TTACATGTAAGACCACGTCTAGGACAGCGGCATCAATATTTGA
*
92971558 TTACATGTAAGACTACGTCTAGGAC
1 TTACATGTAAGACCACGTCTAGGAC
92971583 GTTGGCATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 28 0.49
43 29 0.51
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (43 bp):
TTACATGTAAGACCACGTCTAGGACAGCGGCATCAATATTTGA
Found at i:92975021 original size:2 final size:2
Alignment explanation
Indices: 92975014--92975057 Score: 63
Period size: 2 Copynumber: 22.0 Consensus size: 2
92975004 CCATAAATGG
*
92975014 CT CT CT CT TT CT CT CGT -T CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT C-T CT CT CT CT CT CT CT CT CT CT CT CT CT
92975056 CT
1 CT
92975058 TGCATTTTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
1 1 0.03
2 36 0.95
3 1 0.03
ACGTcount: A:0.00, C:0.45, G:0.02, T:0.52
Consensus pattern (2 bp):
CT
Found at i:92977560 original size:16 final size:16
Alignment explanation
Indices: 92977539--92977575 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
92977529 GTCAAAATAC
92977539 AATTTTATTATTT-ATT
1 AATTTT-TTATTTCATT
92977555 AATTTTTTATTTCATT
1 AATTTTTTATTTCATT
92977571 -ATTTT
1 AATTTT
92977576 CGAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
AATTTTTTATTTCATT
Found at i:92983638 original size:106 final size:102
Alignment explanation
Indices: 92983519--92983759 Score: 265
Period size: 106 Copynumber: 2.3 Consensus size: 102
92983509 AAAATTTGTC
*
92983519 AAATAAATCAAAAACAA-AAAAAAATTACATTC-A-TAACAAATCACAATAAACATTAAACTAAA
1 AAATAAATTAAAAACAACAAAAAAATTACATTCAACTAACAAATCACAATAAACATTAAACTAAA
*
92983581 CAAATACTTAACCTAATCATAAATTACTAACAAAATAACTTTA
66 C-AA-AC--AA-CTAATAAT-AATTACTAACAAAATAACTTTA
* *
92983624 AAATAAATTTAAAAA-AACATAAAAATTTACATTCATAACTTAACAAATCACAATAAATATTAAA
1 AAATAAA-TTAAAAACAACA-AAAAAATTACATTC--AAC-TAACAAATCACAATAAACATTAAA
* * * *
92983688 TTAAACAAACAATTTATAATAGTTACTAACAAAATAACTTTA
61 CTAAACAAACAACTAATAATAATTACTAACAAAATAACTTTA
* *
92983730 AAATAAATTAAAAGCAACATAAAAATTACA
1 AAATAAATTAAAAACAACAAAAAAATTACA
92983760 ATAAAAACTA
Statistics
Matches: 116, Mismatches: 11, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
105 24 0.21
106 39 0.34
107 18 0.16
108 2 0.02
110 3 0.03
111 2 0.02
112 28 0.24
ACGTcount: A:0.60, C:0.13, G:0.01, T:0.26
Consensus pattern (102 bp):
AAATAAATTAAAAACAACAAAAAAATTACATTCAACTAACAAATCACAATAAACATTAAACTAAA
CAAACAACTAATAATAATTACTAACAAAATAACTTTA
Found at i:92983680 original size:112 final size:106
Alignment explanation
Indices: 92983552--92983756 Score: 277
Period size: 106 Copynumber: 1.9 Consensus size: 106
92983542 ATTACATTCA
*
92983552 TAACAAATCACAATAAACATTAAACTAAACAAATACTTAACCTAATCATAAATTACTAACAAAAT
1 TAACAAATCACAATAAACATTAAACTAAAC-AA-AC--AA-CTAATAAT-AATTACTAACAAAAT
92983617 AACTTTAAAATAAATTTAAAA-AAACATAAAAATTTACATTCATAACT
60 AACTTTAAAATAAA-TTAAAAGAAACATAAAAATTTACATTCATAACT
* * * * *
92983664 TAACAAATCACAATAAATATTAAATTAAACAAACAATTTATAATAGTTACTAACAAAATAACTTT
1 TAACAAATCACAATAAACATTAAACTAAACAAACAACTAATAATAATTACTAACAAAATAACTTT
*
92983729 AAAATAAATTAAAAGCAACATAAAAATT
66 AAAATAAATTAAAAGAAACATAAAAATT
92983757 ACAATAAAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
105 6 0.07
106 40 0.47
107 5 0.06
108 2 0.02
110 2 0.02
111 2 0.02
112 28 0.33
ACGTcount: A:0.58, C:0.13, G:0.01, T:0.28
Consensus pattern (106 bp):
TAACAAATCACAATAAACATTAAACTAAACAAACAACTAATAATAATTACTAACAAAATAACTTT
AAAATAAATTAAAAGAAACATAAAAATTTACATTCATAACT
Found at i:92984558 original size:24 final size:26
Alignment explanation
Indices: 92984530--92984579 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
92984520 CTTTTTTTAT
92984530 TAAATAAAAAAC-TTT-AAAATATAA
1 TAAATAAAAAACATTTAAAAATATAA
* *
92984554 TAAATCAAATACATTTAAAAATATAA
1 TAAATAAAAAACATTTAAAAATATAA
92984580 AAACAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 10 0.45
25 3 0.14
26 9 0.41
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (26 bp):
TAAATAAAAAACATTTAAAAATATAA
Found at i:92989727 original size:12 final size:12
Alignment explanation
Indices: 92989706--92989736 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
92989696 GAGAGGTATC
*
92989706 ATGTGCAATTAT
1 ATGTGTAATTAT
92989718 ATGTGTAATTAT
1 ATGTGTAATTAT
92989730 ATGTGTA
1 ATGTGTA
92989737 GATTTTTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.45
Consensus pattern (12 bp):
ATGTGTAATTAT
Found at i:93007721 original size:50 final size:50
Alignment explanation
Indices: 93007661--93008307 Score: 814
Period size: 50 Copynumber: 12.9 Consensus size: 50
93007651 TTGATGTATA
* *
93007661 AGATACGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
**
93007711 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
93007759 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
93007809 AGATATGTATATATGGTAAAGCCGAATGGGTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * *
93007859 AGATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAAATGTATAAATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93007909 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93007957 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
93008005 AGATATGTATATGTGGTAAAACCGAATGGCTAATGCGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
**
93008057 AGATATGTATATGTGGTAAAGCCGAATGATTAATGTGAAATATATATAT-
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * * * ** * *
93008106 ATATATATATATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATG---T-GGTA-AAGCCG--AA--TG---G-CTAATGTGAAATATATATATG
*
93008167 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
* * *
93008217 AGATATGTATATGTGATAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93008265 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
93008308 GTAGGCGATG
Statistics
Matches: 525, Mismatches: 46, Indels: 52
0.84 0.07 0.08
Matches are distributed among these distances:
47 1 0.00
48 183 0.35
49 24 0.05
50 226 0.43
51 4 0.01
52 43 0.08
53 3 0.01
54 5 0.01
56 5 0.01
57 3 0.01
58 2 0.00
60 7 0.01
61 12 0.02
62 7 0.01
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:93007779 original size:98 final size:98
Alignment explanation
Indices: 93007654--93008307 Score: 927
Period size: 98 Copynumber: 6.5 Consensus size: 98
93007644 GCTGAAATTG
* * *
93007654 ATGTATAAGATACGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
93007719 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
93007752 ATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
* *
93007817 ATATATGGTAAAGCCGAATGGGTAATGTGAAATAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * * *
93007852 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAAATGTATAAATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
93007917 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
93007950 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
* *
93008013 ATATGTGGTAAAACCGAATGGCTAATGCGAAATATAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTG--A-A-AT
* **
93008050 ATATATGAGATATGTATATGTGGTAAAGCCGAATGATTAATGTGAAATATATATATATATATATA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----------A-A-ATATATA
*
93008115 TATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
54 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
93008160 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGAGATATG
* *
93008224 TATATGTGATAAAGCCGAATGGCTAGTGTGAAAT
65 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
93008258 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
93008308 GTAGGCGATG
Statistics
Matches: 499, Mismatches: 35, Indels: 44
0.86 0.06 0.08
Matches are distributed among these distances:
96 41 0.08
97 2 0.00
98 228 0.46
99 7 0.01
100 133 0.27
109 1 0.00
110 41 0.08
111 1 0.00
112 2 0.00
113 1 0.00
114 42 0.08
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (98 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:93008125 original size:62 final size:62
Alignment explanation
Indices: 93008044--93008161 Score: 209
Period size: 62 Copynumber: 1.9 Consensus size: 62
93008034 CTAATGCGAA
* *
93008044 ATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGATTAATGTGAAATATATATAT
1 ATATATATATATGAAATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATAT
*
93008106 ATATATATATATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATATATATATATGAAATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATAT
93008162 GTATGAGATA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.36
Consensus pattern (62 bp):
ATATATATATATGAAATATGTATATGTGGTAAAGCCGAATGACTAATGTGAAATATATATAT
Found at i:93008133 original size:162 final size:160
Alignment explanation
Indices: 93007948--93008259 Score: 509
Period size: 162 Copynumber: 1.9 Consensus size: 160
93007938 CTAATGTGAA
* * *
93007948 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATATATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
*
93008013 ATATGTGGTAAAACCGAATGG-CTAATGCGAAATATATATATATGAGATATGTATATGTGGTAAA
66 ATATGTGGTAAAACCGAATGGTC-AATGCG-AA-ATATATATATGAGATATGTATATGTGATAAA
*
93008077 GCCGAATGATTAATGTGAAATATATATATATAT
128 GCCGAATGACTAATGTGAAATATATATATATAT
93008110 ATATATATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATATATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
93008175 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGATAAAGCC
66 ATATGTGGTAAAACCGAATGGTCAATGCGAAATATATATATGAGATATGTATATGTGATAAAGCC
* *
93008240 GAATGGCTAGTGTGAAATAT
131 GAATGACTAATGTGAAATAT
93008260 GTATGAGATA
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
160 50 0.36
161 2 0.01
162 87 0.62
163 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.23, T:0.32
Consensus pattern (160 bp):
ATATATATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
ATATGTGGTAAAACCGAATGGTCAATGCGAAATATATATATGAGATATGTATATGTGATAAAGCC
GAATGACTAATGTGAAATATATATATATAT
Found at i:93008308 original size:48 final size:48
Alignment explanation
Indices: 93008110--93008310 Score: 305
Period size: 48 Copynumber: 4.1 Consensus size: 48
93008100 ATATATATAT
* *
93008110 ATATATATGAAATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
93008158 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA
* * *
93008207 TATATATATGAGATATGTATATGTGATAAAGCCGAATGGCTAGTGTGAA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
93008256 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
93008304 ATATGTA
1 ATATGTA
93008311 GGCGATGTGT
Statistics
Matches: 140, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
47 1 0.01
48 94 0.67
49 4 0.03
50 40 0.29
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:93008567 original size:37 final size:37
Alignment explanation
Indices: 93008459--93008567 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
93008449 AAATATATAT
* *
93008459 TCCGGGTAAGACCCGACGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
93008496 TCAGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
93008533 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
93008568 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:93009894 original size:40 final size:40
Alignment explanation
Indices: 93009840--93010158 Score: 431
Period size: 40 Copynumber: 8.0 Consensus size: 40
93009830 GAGAGTTATA
* *
93009840 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* **
93009880 TATATCCGGGCTAAGTCCTGAAGAGCATTTATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
93009920 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
93009960 TATATCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
93010000 TATATCAGGGTTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * * *
93010040 TATATCCGAGCTAAGTCTCGAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
93010080 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
93010120 TGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
93010159 ATGTGTATTC
Statistics
Matches: 243, Mismatches: 36, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 243 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:93013060 original size:50 final size:50
Alignment explanation
Indices: 93013000--93013744 Score: 1003
Period size: 50 Copynumber: 14.9 Consensus size: 50
93012990 TTGATGTATA
93013000 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
93013050 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
93013100 AGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATGTATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
**
93013150 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGCATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
93013198 AGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATTTATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93013248 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * *
93013298 AGATATGTATATGTGGTAAAACCGAATGGTTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93013346 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93013394 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93013442 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
93013492 AGATATGTATATATGGTAAAGCCGAATGGTTAATGTGAAATATATATAT-
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* * * ** * * * * *
93013541 ATATATATATATATGAGATATGTATATGTGGTAAAGCCGAATG-GCTAATGTGAAATATGTATG
1 AGATATGTATATGTG-G-TA---A-A-GCCG-AATGGCTAATGTG--AA-AT-ATATA--TATG
*
93013604 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
* *
93013654 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
93013702 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
93013745 GTAGGCGATG
Statistics
Matches: 624, Mismatches: 47, Indels: 48
0.87 0.07 0.07
Matches are distributed among these distances:
48 224 0.36
49 25 0.04
50 317 0.51
51 3 0.00
52 4 0.01
53 1 0.00
54 3 0.00
55 8 0.01
56 6 0.01
57 8 0.01
58 3 0.00
59 1 0.00
60 4 0.01
61 2 0.00
62 4 0.01
63 11 0.02
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:93013237 original size:98 final size:98
Alignment explanation
Indices: 93012993--93013744 Score: 987
Period size: 98 Copynumber: 7.5 Consensus size: 98
93012983 GTTGAAATTG
*
93012993 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
93013058 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * *
93013093 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATGTATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
93013158 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
93013191 ATGCATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATTTATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
93013256 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATGT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAA--T
* * * *
93013291 ATATATGAGATATGTATATGTGGTAAAACCGAATGGTTAATGTG-AA-ATATGTATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
93013354 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
93013387 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
*
93013450 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
66 ATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * * * *
93013485 ATATATGAGATATGTATATATGGTAAAGCCGAATGGTTAATGTGAAATATATATAT-ATATATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
* ** * * * *
93013549 ATATATGAGATATGTATATGTGGTAAAGCCGAATG-GCTAAT
66 ATATGTG-G-TA---A-A-GCCG-AATGGCTAATGTG-AAAT
* *
93013590 GTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 ATG---TA----TGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
*
93013654 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
58 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
93013695 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
93013745 GTAGGCGATG
Statistics
Matches: 576, Mismatches: 51, Indels: 52
0.85 0.08 0.08
Matches are distributed among these distances:
96 89 0.15
97 2 0.00
98 225 0.39
99 19 0.03
100 138 0.24
101 2 0.00
102 2 0.00
104 1 0.00
105 16 0.03
106 7 0.01
107 9 0.02
108 3 0.01
111 3 0.01
112 48 0.08
113 12 0.02
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (98 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:93013565 original size:162 final size:162
Alignment explanation
Indices: 93013385--93013696 Score: 554
Period size: 162 Copynumber: 1.9 Consensus size: 162
93013375 CTAATGTGAA
* *
93013385 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
93013450 ATATGTGGTAAAGCCGAATGG-CTAATGCGAAATATATATATGAGATATGTATATATGGTAAAGC
66 ATATGTGGTAAAGCCGAATGGTC-AATGCGAAATATATATATGAGATATGTATATATGGTAAAGC
*
93013514 CGAATGGTTAATGTGAAATATATATATATATAT
130 CGAATGGCTAATGTGAAATATATATATATATAT
93013547 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
* *
93013612 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
66 ATATGTGGTAAAGCCGAATGGTCAATGCGAAATATATATATGAGATATGTATATATGGTAAAGCC
*
93013677 GAATGGCTAGTGTGAAATAT
131 GAATGGCTAATGTGAAATAT
93013697 GTATGAGATA
Statistics
Matches: 143, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
162 142 0.99
163 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (162 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
ATATGTGGTAAAGCCGAATGGTCAATGCGAAATATATATATGAGATATGTATATATGGTAAAGCC
GAATGGCTAATGTGAAATATATATATATATAT
Found at i:93013649 original size:114 final size:114
Alignment explanation
Indices: 93013433--93013652 Score: 372
Period size: 112 Copynumber: 1.9 Consensus size: 114
93013423 CTAATGTGAA
*
93013433 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATAT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATAT
* *
93013498 GTATATATGGTAAAGCCGAATGGTTAATGTGAAATATATATATATATAT
66 GCATATATGGTAAAGCCGAATGGTCAATGTGAAATATATATATATATAT
* *
93013547 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATAT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATAT
*
93013610 GCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATAT
66 GCATATATGGTAAAGCCGAATGGTCAATGTGAAATATATATAT
93013653 GAGATATGTA
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
112 54 0.54
113 2 0.02
114 44 0.44
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (114 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATAT
GCATATATGGTAAAGCCGAATGGTCAATGTGAAATATATATATATATAT
Found at i:93013704 original size:210 final size:210
Alignment explanation
Indices: 93013337--93013744 Score: 687
Period size: 210 Copynumber: 1.9 Consensus size: 210
93013327 TTAATGTGAA
* *
93013337 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
*
93013402 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
*
93013467 ATGGCTAATGCGAAATATATATATGAGATATGTATATATGGTAAAGCCGAATGGTTAATGTGAAA
131 ATGGCTAATGCGAAATATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAA
93013532 TATATATATATATAT
196 TATATATATATATAT
93013547 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
93013612 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
66 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
* * * * *
93013676 CGAATGGCTAGTGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
128 CGAATGGCTAATGCGAAATATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTG
93013739 AAATAT
193 AAATAT
93013745 GTAGGCGATG
Statistics
Matches: 186, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
209 1 0.01
210 138 0.74
211 4 0.02
212 43 0.23
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (210 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGCGAAATATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAA
TATATATATATATAT
Found at i:93013745 original size:48 final size:48
Alignment explanation
Indices: 93013547--93013747 Score: 323
Period size: 48 Copynumber: 4.1 Consensus size: 48
93013537 ATATATATAT
*
93013547 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
93013595 ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA
* *
93013644 TATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
93013693 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
93013741 ATATGTA
1 ATATGTA
93013748 GGCGATGTGT
Statistics
Matches: 143, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
47 1 0.01
48 96 0.67
49 4 0.03
50 41 0.29
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:93014004 original size:37 final size:37
Alignment explanation
Indices: 93013896--93014004 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
93013886 AAATATATAT
* *
93013896 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
93013933 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
93013970 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
93014005 CATCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:93042797 original size:15 final size:16
Alignment explanation
Indices: 93042765--93042808 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
93042755 GTTTGGAATT
*
93042765 TTTTATATTTTTAAATAA
1 TTTT-TATTTTT-CATAA
93042783 TTTTT-TTTTTCATAA
1 TTTTTATTTTTCATAA
93042798 TTTTTATTTTT
1 TTTTTATTTTT
93042809 AAAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 9 0.38
16 10 0.42
17 1 0.04
18 4 0.17
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTTATTTTTCATAA
Found at i:93046904 original size:25 final size:25
Alignment explanation
Indices: 93046858--93046905 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
93046848 TCGATTAAAT
* **
93046858 AATGATATTATGGTTTTTGATATTG
1 AATGATATTATGGTATAGGATATTG
*
93046883 AATGATATTTTGGTATAGGATAT
1 AATGATATTATGGTATAGGATAT
93046906 ATGTATATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (25 bp):
AATGATATTATGGTATAGGATATTG
Found at i:93047833 original size:18 final size:18
Alignment explanation
Indices: 93047819--93048101 Score: 176
Period size: 18 Copynumber: 15.3 Consensus size: 18
93047809 GAACAATTAT
*
93047819 TTATTCAGTAACAATCAC
1 TTATTCAGTAACAATCAA
*
93047837 TTATTCTGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * * *
93047855 TTATTCAATAATAACCAG
1 TTATTCAGTAACAATCAA
* *
93047873 TTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAA
*
93047891 TTGATCGGTTATCCAGTAACAGTCAA
1 TT-A-----T-T-CAGTAACAATCAA
*
93047917 TTATTTAGTAA-AATCAGA
1 TTATTCAGTAACAATCA-A
* *
93047935 -TATTCAGTAGCAATTAA
1 TTATTCAGTAACAATCAA
* * * *
93047952 GTTATTCAATAGCAGTCAT
1 -TTATTCAGTAACAATCAA
* *
93047971 TTATTCAGTGACAATCAG
1 TTATTCAGTAACAATCAA
**
93047989 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAA
* * *
93048007 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAA
* *
93048025 TTATTCAGTAACAGTCTA
1 TTATTCAGTAACAATCAA
*
93048043 TTA-TCTAGTAACAGTCAA
1 TTATTC-AGTAACAATCAA
* *
93048061 TTATTCGGTAACAGTCAA
1 TTATTCAGTAACAATCAA
* *
93048079 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAA
93048097 TTATT
1 TTATT
93048102 TTATACTTTT
Statistics
Matches: 204, Mismatches: 47, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
17 15 0.07
18 156 0.76
19 17 0.08
20 1 0.00
24 1 0.00
25 2 0.01
26 12 0.06
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:93047859 original size:36 final size:36
Alignment explanation
Indices: 93047810--93048101 Score: 194
Period size: 36 Copynumber: 7.9 Consensus size: 36
93047800 TAACAATTAG
* * * *
93047810 AACAATTATTTATTCAGTAACAATCACTTATTCTGT
1 AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
* * *
93047846 AACAATCAATTATTCAATAATAACCAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
* * * * *
93047882 ATCGATCAATTGATCGGTTATCCAGTAACAGTCAATTATTTAGT
1 AACAATCAATT-A-----T-T-CAGTAACAATCAGTTATTCAGT
* * *
93047926 AA-AATCAGA-TATTCAGTAGCAATTAAGTTATTCAAT
1 AACAATCA-ATTATTCAGTAACAA-TCAGTTATTCAGT
* * * *
93047962 AGCAGTCATTTATTCAGTGACAATCAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
** * *
93047998 AATGATCAATTATTCAGTAATATTCAGTTATTCAGT
1 AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
* * * * *
93048034 AACAGTCTATTA-TCTAGTAACAGTCAATTATTCGGT
1 AACAATCAATTATTC-AGTAACAATCAGTTATTCAGT
* *
93048070 AACAGTCAATTATTCAGTAATAATCAGTTATT
1 AACAATCAATTATTCAGTAACAATCAGTTATT
93048102 TTATACTTTT
Statistics
Matches: 192, Mismatches: 50, Indels: 28
0.71 0.19 0.10
Matches are distributed among these distances:
35 9 0.05
36 138 0.72
37 19 0.10
42 2 0.01
43 6 0.03
44 18 0.09
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
AACAATCAATTATTCAGTAACAATCAGTTATTCAGT
Found at i:93048252 original size:6 final size:6
Alignment explanation
Indices: 93048241--93048287 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
93048231 AGTGTCGAAT
93048241 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
93048288 GTCGGCACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:93052816 original size:31 final size:31
Alignment explanation
Indices: 93052781--93052852 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
93052771 CACACGCCCG
* *
93052781 TGTGGACTACCCATGTCGACCCATACGCCTA
1 TGTGGACTACCCATGTCGACCCACACACCTA
* *
93052812 TGTGGACTACCCGTGTCGACCCACACACCTG
1 TGTGGACTACCCATGTCGACCCACACACCTA
*
93052843 TGTGGCCTAC
1 TGTGGACTAC
93052853 ATGACCCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.19, C:0.36, G:0.22, T:0.22
Consensus pattern (31 bp):
TGTGGACTACCCATGTCGACCCACACACCTA
Found at i:93072332 original size:29 final size:29
Alignment explanation
Indices: 93072183--93072374 Score: 208
Period size: 29 Copynumber: 6.5 Consensus size: 29
93072173 ACTCGATTTC
* * **
93072183 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
93072212 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
93072240 CGCACACCCAGTGCCGTATATTTCCATGCAT
1 -GCACACTTAGTGCCATATATTTCCA-GCAT
*
93072271 GCACACTTAGTTACCATATTATTTCCAGCAT
1 GCACACTTAG-TGCCATA-TATTTCCAGCAT
93072302 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93072331 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93072360 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
93072375 ATCTCGTCAC
Statistics
Matches: 138, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
28 2 0.01
29 92 0.67
30 16 0.12
31 20 0.14
32 8 0.06
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:93080404 original size:29 final size:29
Alignment explanation
Indices: 93080314--93080502 Score: 229
Period size: 29 Copynumber: 6.5 Consensus size: 29
93080304 ACTCGATTTC
* * **
93080314 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
93080343 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
93080371 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
93080401 GCACACTTAGTACCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93080430 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93080459 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
93080488 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
93080503 ATCTCGTCAC
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.01
29 135 0.98
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:93084099 original size:23 final size:23
Alignment explanation
Indices: 93084069--93084116 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
93084059 GCCGAGTTAG
93084069 TCCGGATATACTGAGTAAACCAA
1 TCCGGATATACTGAGTAAACCAA
93084092 TCCGGATATACTGAGTAAACCAA
1 TCCGGATATACTGAGTAAACCAA
93084115 TC
1 TC
93084117 ATTCATCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (23 bp):
TCCGGATATACTGAGTAAACCAA
Found at i:93084904 original size:2 final size:2
Alignment explanation
Indices: 93084899--93084938 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
93084889 ATATTCGCGC
93084899 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93084939 TTATTTGACT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93088642 original size:47 final size:46
Alignment explanation
Indices: 93088589--93088718 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 46
93088579 ACAATTGATA
93088589 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT-TATCCTGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCT-TCCT-G
** *
93088636 AGTACCTATACCATGGCCTATAGCCAAATCAAGGTAACTCCTTTCTG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT-CTTCCTG
* *
93088683 AATACCTACACCATGGCCCGTAGCCAAATCAAGGTA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
93088719 TTATTCACAC
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
47 70 0.95
48 3 0.04
49 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (46 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTTCCTG
Found at i:93101515 original size:31 final size:31
Alignment explanation
Indices: 93101480--93101541 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
93101470 TTTATTGTGC
93101480 TATTAAATTATGATAGAGGGATATTCTAACT
1 TATTAAATTATGATAGAGGGATATTCTAACT
93101511 TATTAAATTATGATAGAGGGATATTCTAACT
1 TATTAAATTATGATAGAGGGATATTCTAACT
93101542 AGGAAAGACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (31 bp):
TATTAAATTATGATAGAGGGATATTCTAACT
Found at i:93107100 original size:6 final size:6
Alignment explanation
Indices: 93107082--93107203 Score: 83
Period size: 6 Copynumber: 19.8 Consensus size: 6
93107072 AAAAAACATT
* *
93107082 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
93107131 ATCGGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCA-A TATCAAGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA -ATC-AG-A
*
93107182 A-CAGA ATCAAA ATCAGA ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
93107204 TATGAGGTAA
Statistics
Matches: 91, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
5 7 0.08
6 72 0.79
7 8 0.09
8 3 0.03
9 1 0.01
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:93107129 original size:31 final size:31
Alignment explanation
Indices: 93107091--93107232 Score: 169
Period size: 31 Copynumber: 4.5 Consensus size: 31
93107081 TATCAGAACT
* * *
93107091 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* * *
93107122 AGAATCAGAATCGGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
93107153 AGAATCAAAATCAGAATCA-ATATCAAGTAAC
1 AGAATCAAAATCAGAATCAGA-ATCAGGTAAC
* *
93107184 AGAATCAAAATCAGAATCAGTATGAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
93107215 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
93107233 GTGAAAGCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
31 85 0.89
32 11 0.11
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:93107188 original size:62 final size:62
Alignment explanation
Indices: 93107091--93107232 Score: 187
Period size: 62 Copynumber: 2.3 Consensus size: 62
93107081 TATCAGAACT
* * * * * *
93107091 AGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCGGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAAGTAACAGAATCAAAATCAGAATCAGTATCAGGTAAC
*
93107153 AGAATCAAAATCAGAATCA-ATATCAAGTAACAGAATCAAAATCAGAATCAGTATGAGGTAAC
1 AGAATCAAAATCAGAATCAGA-ATCAAGTAACAGAATCAAAATCAGAATCAGTATCAGGTAAC
*
93107215 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
93107233 GTGAAAGCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
61 1 0.01
62 58 0.83
63 11 0.16
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (62 bp):
AGAATCAAAATCAGAATCAGAATCAAGTAACAGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:93107399 original size:27 final size:27
Alignment explanation
Indices: 93107369--93107497 Score: 145
Period size: 27 Copynumber: 4.8 Consensus size: 27
93107359 GCTCAATTAT
*
93107369 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGACAGAGCCACCAGATA
*
93107396 CAGATATTATGGA-AGAGCCACCAGATA
1 CAGATATTGT-GACAGAGCCACCAGATA
*
93107423 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGACAGAGCCACCAGATA
* * *
93107449 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGACAGAGCCACCAGATA
* * *
93107477 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGACAGAGCCAC
93107498 TTAACAGAAT
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
26 8 0.09
27 74 0.81
28 9 0.10
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGACAGAGCCACCAGATA
Found at i:93107469 original size:54 final size:54
Alignment explanation
Indices: 93107369--93107497 Score: 170
Period size: 54 Copynumber: 2.4 Consensus size: 54
93107359 GCTCAATTAT
* * *
93107369 CAGATATTGTGACAGAGTCACCAGATACAGATATTATGGAAGAGCCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATACAGATATTATGGAAGAGCCACCAGAAA
* * *
93107423 CAGATATTGTGGCAGAGCCACCAGA-ACAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATATTGTGGCAGAGCCACCAGATACAGATA-TTATGGAAGAGCCACCAGAAA
* *
93107477 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
93107498 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
53 7 0.11
54 59 0.89
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
CAGATATTGTGGCAGAGCCACCAGATACAGATATTATGGAAGAGCCACCAGAAA
Found at i:93107523 original size:54 final size:54
Alignment explanation
Indices: 93107369--93107515 Score: 124
Period size: 54 Copynumber: 2.8 Consensus size: 54
93107359 GCTCAATTAT
* * * * *
93107369 CAGATATTGTGACAGAGTCACCAGATACAGATATTA--TGG-AAGAGCCACCAGATA
1 CAGATAATGTGGCAAAGCCACCAGA-ACAGATA-TACGTGGCAA-AGCCACCAGAAA
* * ** *
93107423 CAGATATTGTGGCAGAGCCACCAGAACAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATAATGTGGCAAAGCCACCAGAACAGATATACGTGGCAAAGCCACCAGAAA
**
93107477 CAGATAATGTGGCAAAGCCA-CTTAACAGA-ATACGTGGCA
1 CAGATAATGTGGCAAAGCCACCAGAACAGATATACGTGGCA
93107516 CAAAGCCATC
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
52 9 0.11
53 14 0.18
54 55 0.70
55 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.19
Consensus pattern (54 bp):
CAGATAATGTGGCAAAGCCACCAGAACAGATATACGTGGCAAAGCCACCAGAAA
Found at i:93107690 original size:22 final size:22
Alignment explanation
Indices: 93107656--93107720 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
93107646 GCAAATATGT
* *
93107656 TTGGTACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
93107678 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
93107700 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
93107721 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:93108204 original size:27 final size:27
Alignment explanation
Indices: 93108147--93108667 Score: 724
Period size: 27 Copynumber: 19.3 Consensus size: 27
93108137 GGGGCAAAAT
* * * *
93108147 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93108173 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
93108200 AGTAATTCTACCCTACAGAGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93108227 GAG-AATTCTACCCTACAAGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
93108254 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93108281 GGTAATTCTACCCTAAAGGGGTTTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93108308 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
93108335 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93108362 GGTAATTCTACCCTATAAGGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGGTATTTC
* *
93108390 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
93108417 GATAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93108444 GGTAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
93108471 GTTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93108498 GGTAATTCTACCCTATAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
*
93108525 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
93108552 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
93108579 GGTAATTCTACCCTACAGGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGGTATTTC
** * *
93108607 AATAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
93108634 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
93108661 GGTAATT
1 GGTAATT
93108668 TTATAAAAAA
Statistics
Matches: 438, Mismatches: 50, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
26 16 0.04
27 371 0.85
28 51 0.12
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:93108546 original size:217 final size:216
Alignment explanation
Indices: 93108147--93108667 Score: 764
Period size: 217 Copynumber: 2.4 Consensus size: 216
93108137 GGGGCAAAAT
* * * * * **
93108147 GGTAATTTTACCCCACAA--GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTA
1 GGTAATTCTACCCTACAAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTCGA-TAATTCTA
*
93108210 CCCTACAGAGGTATTGCGAG-AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGG
65 CCCTACAGAGGTATTTCG-GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGG
*
93108274 GTATTTCGGTAATTCTACCCTAAAGGGGTTTTTCAGTAATTCTACCCTACAGGGGTATTTCGGTA
129 GTATTTCGGTAATTCTACCCTAAAGGGGTTTGTCAGTAATTCTACCCTACAGGGGTATTTCGGTA
*
93108339 ATTCTACCCTACAGGGGTATTTC
194 ATTCTACCCTACAGGGGTATTCC
*
93108362 GGTAATTCTACCCTATAAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTA
1 GGTAATTCTACCCTACAAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATT-CGATAATTCTA
* *
93108427 CCCTACAGAGGTATTTCGGTAATTCTACCCTAC-AGGGATATTTCGTTAATTCTACCCTATAGGG
65 CCCTACAGAGGTATTTCGGTAATTCTACCCTACAAGGG-TATTTCGGTAATTCTACCCTACAGGG
* * *
93108491 GTATTTTGGTAATTCTACCCTATAGGGGTATTGTGA-TAATTCTACCCTACAGGGGTATTTCGGT
129 GTATTTCGGTAATTCTACCCTAAAGGGGT-TTGTCAGTAATTCTACCCTACAGGGGTATTTCGGT
93108555 AATTCTACCCTACAGGGGTATTCC
193 AATTCTACCCTACAGGGGTATTCC
* ** *
93108579 GGTAATTCTACCCTACAGGGGGTATTTCAATAATTCTACCCTATAGGGGTATTCCGGTAATTCTA
1 GGTAATTCTACCCTACAAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATT-CGATAATTCTA
*
93108644 CCCTACAGGGGTATTTCGGTAATT
65 CCCTACAGAGGTATTTCGGTAATT
93108668 TTATAAAAAA
Statistics
Matches: 277, Mismatches: 23, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
215 15 0.05
216 5 0.02
217 252 0.91
218 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (216 bp):
GGTAATTCTACCCTACAAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTCGATAATTCTAC
CCTACAGAGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGT
ATTTCGGTAATTCTACCCTAAAGGGGTTTGTCAGTAATTCTACCCTACAGGGGTATTTCGGTAAT
TCTACCCTACAGGGGTATTCC
Found at i:93108837 original size:27 final size:27
Alignment explanation
Indices: 93108649--93108830 Score: 229
Period size: 27 Copynumber: 6.7 Consensus size: 27
93108639 TTCTACCCTA
* *
93108649 CAGGGGTATTTCGGTAATTTTATAAAA
1 CAGGGGTATTTTGGTAATTTTATAAAC
* * * *
93108676 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
*
93108703 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
93108730 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* *
93108757 CAGGGGTATCTTGGTGATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* * * *
93108784 CAAGGGTATTTTAGTGATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
93108811 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
93108831 GGTAAACTAA
Statistics
Matches: 130, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTATAAAC
Found at i:93108837 original size:54 final size:54
Alignment explanation
Indices: 93108649--93108830 Score: 292
Period size: 54 Copynumber: 3.4 Consensus size: 54
93108639 TTCTACCCTA
* **
93108649 CAGGGGTATTTCGGTAATTTTATAAAAAAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* *
93108703 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
* * *
93108757 CAGGGGTATCTTGGTGATTTTATAAACCAAGGGTATTTTAGTGATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
93108811 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
93108831 GGTAAACTAA
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 116 1.00
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
Found at i:93110115 original size:37 final size:37
Alignment explanation
Indices: 93110056--93110164 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
93110046 AGCTCAGACG
* *
93110056 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
93110093 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
93110130 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
93110165 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:93110428 original size:100 final size:96
Alignment explanation
Indices: 93110310--93110495 Score: 293
Period size: 100 Copynumber: 1.9 Consensus size: 96
93110300 GCACATCGCC
* *
93110310 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTC----ATACATATTTCACA
93110375 TT-GACCATTCGGCTTTACCACATATGCATATCTCA
62 TTAG-CCATTCGGCTTTACCACATATGCATATCTCA
*
93110410 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAG
93110475 CCATTCGGCTTTACCACATAT
66 CCATTCGGCTTTACCACATAT
93110496 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
96 36 0.44
97 1 0.01
100 45 0.55
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATGCATATCTCA
Found at i:93110439 original size:48 final size:48
Alignment explanation
Indices: 93110310--93110496 Score: 286
Period size: 48 Copynumber: 3.8 Consensus size: 48
93110300 GCACATCGCC
*
93110310 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
93110362 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
93110410 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
93110458 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
93110497 TGCATGTTCA
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
48 82 0.65
49 1 0.01
51 1 0.01
52 42 0.33
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:93110602 original size:47 final size:47
Alignment explanation
Indices: 93110466--93110612 Score: 186
Period size: 47 Copynumber: 3.1 Consensus size: 47
93110456 CATACATATT
* * * *
93110466 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
93110513 CCATATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
93110560 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
93110607 TCACAT
1 TCACAT
93110613 AAAATCCTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:93112167 original size:2 final size:2
Alignment explanation
Indices: 93112160--93112199 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
93112150 TCATGCGCAA
93112160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93112200 GTGTGTGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93115492 original size:42 final size:40
Alignment explanation
Indices: 93115445--93115561 Score: 110
Period size: 41 Copynumber: 2.8 Consensus size: 40
93115435 CCATTTTAAG
93115445 GATCAAGTCTCAATGACCCTTGAAGCAAAATCATCCATCCAA
1 GATCAAGTCTCAATGACCCTTGAAGCAAAATCAT--ATCCAA
* ** * *
93115487 GATCAAGTCTTGAA-GACCCTTGGATCCAAACTCATTTCCAA
1 GATCAAGTC-TCAATGACCCTT-GAAGCAAAATCATATCCAA
* * *
93115528 GATCAAGTCTCGATAACCCCTGAAGCAAACATCA
1 GATCAAGTCTCAATGACCCTTGAAGCAAA-ATCA
93115562 ATTATTTATG
Statistics
Matches: 59, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
40 8 0.14
41 22 0.37
42 16 0.27
43 13 0.22
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (40 bp):
GATCAAGTCTCAATGACCCTTGAAGCAAAATCATATCCAA
Found at i:93128139 original size:16 final size:16
Alignment explanation
Indices: 93128118--93128148 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93128108 GTTTTTGTAT
93128118 TTATTTATTATTAATA
1 TTATTTATTATTAATA
*
93128134 TTATTTATTTTTAAT
1 TTATTTATTATTAAT
93128149 TGTGTTGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTTATTATTAATA
Found at i:93128198 original size:17 final size:16
Alignment explanation
Indices: 93128173--93128216 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 16
93128163 CTTACTATTA
*
93128173 TATTATTTATTAGTAT
1 TATTATTTATTAGGAT
93128189 TATGTATTTATTAGGAT
1 TAT-TATTTATTAGGAT
93128206 TATT-TTTATTA
1 TATTATTTATTA
93128217 TCATAGTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 7 0.27
16 4 0.15
17 15 0.58
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (16 bp):
TATTATTTATTAGGAT
Found at i:93134078 original size:87 final size:87
Alignment explanation
Indices: 93133805--93134089 Score: 268
Period size: 87 Copynumber: 3.3 Consensus size: 87
93133795 GATTCTGATA
* * * * * * * *
93133805 TGATATGGCAATTTTACTGCAACTTATTTGTACAACGGTGTATTGCACTATACCACACGTACGTC
1 TGATCTGGCAATTTTACTACAACTTATTCGTACAGCGGTTTACTGCACTGTACCGCACGTACGTC
* * * *
93133870 AGCTTTGCTGCTTACCAATATT
66 AGATTTGCTGCGTACCATTATC
* * * * * *
93133892 TGATCTGGTAGTTTTACTGCAACTTATTCGTACAGTGGTTTACTGCACTGTACCGCATGTACATC
1 TGATCTGGCAATTTTACTACAACTTATTCGTACAGCGGTTTACTGCACTGTACCGCACGTACGTC
* * *
93133957 A-ACTTTGCTACGTACTATTGTC
66 AGA-TTTGCTGCGTACCATTATC
** * * * *
93133979 TGATCTAACAATTTTACTACAACTTATTCGTATAGCGGTTTACCGCACTGTACTGTACGTACGTC
1 TGATCTGGCAATTTTACTACAACTTATTCGTACAGCGGTTTACTGCACTGTACCGCACGTACGTC
*
93134044 AGATTTACTGCGTACCATTATC
66 AGATTTGCTGCGTACCATTATC
*
93134066 T-AGTCTGGCAATTTAAACTACAAC
1 TGA-TCTGGCAATTT-TACTACAAC
93134090 ATGTTTGTTT
Statistics
Matches: 156, Mismatches: 38, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
86 1 0.01
87 146 0.94
88 9 0.06
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (87 bp):
TGATCTGGCAATTTTACTACAACTTATTCGTACAGCGGTTTACTGCACTGTACCGCACGTACGTC
AGATTTGCTGCGTACCATTATC
Found at i:93139503 original size:26 final size:26
Alignment explanation
Indices: 93139466--93139515 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
93139456 TGAGCATAAA
* * *
93139466 AAAATGTGATATTTAATAATAAATTT
1 AAAATGTAATATATAATAAAAAATTT
93139492 AAAATGTAATATATAATAAAAAAT
1 AAAATGTAATATATAATAAAAAAT
93139516 ATATTTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (26 bp):
AAAATGTAATATATAATAAAAAATTT
Found at i:93139825 original size:21 final size:20
Alignment explanation
Indices: 93139801--93140073 Score: 87
Period size: 22 Copynumber: 12.8 Consensus size: 20
93139791 TTTAATGATA
93139801 ATAATATATAGATAAAAATGT
1 ATAATATATA-ATAAAAATGT
93139822 ATAATAATATAA-AAAAATGACAT
1 ATAAT-ATATAATAAAAATG---T
* **
93139845 AATGATATATAATAAAATAAAT
1 -ATAATATATAATAAAA-ATGT
93139867 ATAATATATAATATAAAA-GT
1 ATAATATATAATA-AAAATGT
* * *
93139887 AT-ATATGTAAAAAATAATAT
1 ATAATATATAATAAA-AATGT
93139907 ATAATATATATATAAATAAT-T
1 ATAATATATA-ATAAA-AATGT
*
93139928 AATAAATATATAAT-ACAA-GT
1 -AT-AATATATAATAAAAATGT
* * *
93139948 A-AAAATATAATAATAATAT
1 ATAATATATAATAAAAATGT
* *
93139967 ATAA-ATAATAATGTAAAATAAT
1 ATAATAT-ATAAT-AAAAAT-GT
* * *
93139989 AATAATTTGTGAA-AAATAATAT
1 -ATAATATAT-AATAAA-AATGT
* **
93140011 ATAATAAATAATAATAATATAA
1 ATAATATATAATAA-AA-ATGT
*
93140033 ATAATATATAATAAAATAATCAT
1 ATAATATATAAT-AAA-AAT-GT
93140056 ATAATATATAATATAAAA
1 ATAATATATAATA-AAAA
93140074 AAAAGTTAAA
Statistics
Matches: 195, Mismatches: 25, Indels: 63
0.69 0.09 0.22
Matches are distributed among these distances:
17 9 0.05
18 5 0.03
19 15 0.08
20 25 0.13
21 40 0.21
22 48 0.25
23 41 0.21
24 11 0.06
25 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (20 bp):
ATAATATATAATAAAAATGT
Found at i:93139839 original size:20 final size:21
Alignment explanation
Indices: 93139801--93139939 Score: 67
Period size: 21 Copynumber: 6.5 Consensus size: 21
93139791 TTTAATGATA
93139801 ATAATATATAGATAAAAATGT
1 ATAATATATAGATAAAAATGT
*
93139822 ATAATAATATA-A-AAAAATGAC
1 ATAAT-ATATAGATAAAAATG-T
* **
93139843 ATAATGATATATAATAAAATAAAT
1 ATAAT-ATATA-GATAAAA-ATGT
93139867 ATAATATATA-ATATAAAA-GT
1 ATAATATATAGATA-AAAATGT
* * *
93139887 AT-ATATGTA-AAAAATAATAT
1 ATAATATATAGATAAA-AATGT
*
93139907 ATAATATATATATAAATAAT-T
1 ATAATATATAGATAAA-AATGT
93139928 AATAAATATATA
1 -AT-AATATATA
93139940 ATACAAGTAA
Statistics
Matches: 94, Mismatches: 11, Indels: 24
0.73 0.09 0.19
Matches are distributed among these distances:
18 2 0.02
19 10 0.11
20 13 0.14
21 27 0.29
22 18 0.19
23 14 0.15
24 9 0.10
25 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (21 bp):
ATAATATATAGATAAAAATGT
Found at i:93139903 original size:26 final size:26
Alignment explanation
Indices: 93139856--93140140 Score: 129
Period size: 24 Copynumber: 11.6 Consensus size: 26
93139846 ATGATATATA
*
93139856 ATAAAATA-A-ATAT-AATATATAAT
1 ATAAAATATATATATAAATAAATAAT
*
93139879 ATAAAAGTATATATGTAAA-AAATAAT
1 ATAAAA-TATATATATAAATAAATAAT
* *
93139905 ATATAATATATATATAAATAATTAAT
1 ATAAAATATATATATAAATAAATAAT
* * *
93139931 A-AATATATA-ATACAAGTAAA-AAT
1 ATAAAATATATATATAAATAAATAAT
93139954 ATAATAATA-ATATATAAAT-AATAAT
1 ATAA-AATATATATATAAATAAATAAT
* ***
93139979 GTAAAATA-ATA-AT-AATTTGTGAA-
1 ATAAAATATATATATAAATAAAT-AAT
93140002 A-AATAATATATA-ATAAATAATAATAAT
1 ATAA-AATATATATATAAAT-A-AATAAT
93140029 AT-AAATA-ATATAT-AATAAAATAAT
1 ATAAAATATATATATAAAT-AAATAAT
*
93140053 CATATAATATATAATATAAA-AAA-AAGT
1 -ATAAAATATAT-ATATAAATAAATAA-T
* * *
93140080 -TAAAA-ATA-AAACAAAT-AACAAT
1 ATAAAATATATATATAAATAAATAAT
* *
93140102 ATAAAA-AAATATATATAT-AATAAT
1 ATAAAATATATATATAAATAAATAAT
*
93140126 A-AAAATAAATATATA
1 ATAAAATATATATATA
93140141 GGGTTAGATT
Statistics
Matches: 203, Mismatches: 29, Indels: 59
0.70 0.10 0.20
Matches are distributed among these distances:
22 13 0.06
23 30 0.15
24 58 0.29
25 50 0.25
26 35 0.17
27 11 0.05
28 4 0.02
29 2 0.01
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (26 bp):
ATAAAATATATATATAAATAAATAAT
Found at i:93140069 original size:30 final size:30
Alignment explanation
Indices: 93139798--93140070 Score: 153
Period size: 30 Copynumber: 9.0 Consensus size: 30
93139788 ACCTTTAATG
* *
93139798 ATAATAATATATAGATA-AAAATGTATAATAAT
1 ATAATAATA-ATA-ATATATAATATATAAT-AT
* *
93139830 ATAA-AAAAATGACATA-ATGATATATAATA-
1 ATAATAATAAT-A-ATATATAATATATAATAT
*
93139859 A-AATAA-ATATAATATATAATATAAAAGTAT
1 ATAATAATA-ATAATATATAATATATAA-TAT
* *
93139889 ATATGTAAAAAATAATATATAATATAT-ATAT
1 ATA-AT-AATAATAATATATAATATATAATAT
* *
93139920 A-AATAATTAATAAATATATAATACAAGTAA-AA
1 ATAATAA-TAAT-AATATATAATA-TA-TAATAT
*
93139952 AT-ATAATAATAATATATAA-ATAATAATGT
1 ATAATAATAATAATATATAATAT-ATAATAT
* * * *
93139981 AAAATAATAATAATTTGTGAA-AAATAATAT
1 ATAATAATAATAATATAT-AATATATAATAT
*
93140011 ATAATAAATAATAATA-AT-ATAAATAATAT
1 ATAAT-AATAATAATATATAATATATAATAT
93140040 ATAATAA-AATAATCATATAATATATAATAT
1 ATAATAATAATAAT-ATATAATATATAATAT
93140070 A
1 A
93140071 AAAAAAAGTT
Statistics
Matches: 191, Mismatches: 25, Indels: 52
0.71 0.09 0.19
Matches are distributed among these distances:
27 9 0.05
28 22 0.12
29 30 0.16
30 60 0.31
31 38 0.20
32 13 0.07
33 18 0.09
34 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.34
Consensus pattern (30 bp):
ATAATAATAATAATATATAATATATAATAT
Found at i:93143973 original size:22 final size:23
Alignment explanation
Indices: 93143948--93143994 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
93143938 ATTTCAAGTT
* *
93143948 TTAAATTATGTTATTTA-ACTTA
1 TTAAAGTATATTATTTATACTTA
93143970 TT-AAGTATATTATTTATACTTA
1 TTAAAGTATATTATTTATACTTA
93143992 TTA
1 TTA
93143995 TAAAACCCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55
Consensus pattern (23 bp):
TTAAAGTATATTATTTATACTTA
Found at i:93145167 original size:22 final size:22
Alignment explanation
Indices: 93145133--93145189 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
93145123 ATCTTTGTTC
93145133 AGCACTTCGGTGCTCTCTGATT
1 AGCACTTCGGTGCTCTCTGATT
93145155 AGCA-TTCGTGTGCTCTCT-ATTT
1 AGCACTTCG-GTGCTCTCTGA-TT
93145177 AGCACTTCGGTGC
1 AGCACTTCGGTGC
93145190 ACTTTGGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.16
22 23 0.72
23 4 0.12
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.37
Consensus pattern (22 bp):
AGCACTTCGGTGCTCTCTGATT
Found at i:93145181 original size:44 final size:44
Alignment explanation
Indices: 93145105--93145189 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
93145095 GCCCTATTAA
* *
93145105 CTGATTAGCATATCTGTGATCTTTGTTCAGCACTTCGGTGCTCT
1 CTGATTAGCATATCTGTGATCTCTATTCAGCACTTCGGTGCTCT
* *
93145149 CTGATTAGCAT-TCGTGTGCTCTCTATTTAGCACTTCGGTGC
1 CTGATTAGCATATC-TGTGATCTCTATTCAGCACTTCGGTGC
93145190 ACTTTGGTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.40
Consensus pattern (44 bp):
CTGATTAGCATATCTGTGATCTCTATTCAGCACTTCGGTGCTCT
Found at i:93151274 original size:26 final size:26
Alignment explanation
Indices: 93151245--93151352 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
93151235 TGGTACAAAT
*
93151245 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
93151271 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93151297 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93151323 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93151349 TGAT
1 TGAT
93151353 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93154880 original size:21 final size:22
Alignment explanation
Indices: 93154847--93154898 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
93154837 TAATTTAAAT
* *
93154847 TTTAAAA--TTATATATATTTA
1 TTTAAAATTTTATATAGAGTTA
93154867 -TTAAAATTTTATATAGAGTTA
1 TTTAAAATTTTATATAGAGTTA
93154888 TTTAAAATTTT
1 TTTAAAATTTT
93154899 TAATGTTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 6 0.22
21 11 0.41
22 10 0.37
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTAAAATTTTATATAGAGTTA
Found at i:93157002 original size:28 final size:29
Alignment explanation
Indices: 93156962--93157016 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
93156952 AATAACACAA
*
93156962 TTTGTGAAGTTTTCTCATATTAAATGTAT
1 TTTGTGAAGTTTTCTCATATCAAATGTAT
* * *
93156991 TTTGTG-ATTTTTTTTATATCAAATGT
1 TTTGTGAAGTTTTCTCATATCAAATGT
93157017 GACATATTCG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 16 0.73
29 6 0.27
ACGTcount: A:0.25, C:0.05, G:0.13, T:0.56
Consensus pattern (29 bp):
TTTGTGAAGTTTTCTCATATCAAATGTAT
Found at i:93158757 original size:21 final size:23
Alignment explanation
Indices: 93158732--93158779 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
93158722 GTAAAGGGTA
93158732 GCACACGACCGTGT-G-ACAGAG
1 GCACACGACCGTGTGGTACAGAG
*
93158753 GCACACGCCCGTGTGGTACAGAG
1 GCACACGACCGTGTGGTACAGAG
93158776 GCAC
1 GCAC
93158780 GGCCGTGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 13 0.54
22 1 0.04
23 10 0.42
ACGTcount: A:0.25, C:0.31, G:0.33, T:0.10
Consensus pattern (23 bp):
GCACACGACCGTGTGGTACAGAG
Found at i:93158780 original size:21 final size:21
Alignment explanation
Indices: 93158734--93158788 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
93158724 AAAGGGTAGC
93158734 ACACGACCGTGT-GACAGAGG
1 ACACGACCGTGTGGACAGAGG
*
93158754 CACACGCCCGTGTGGTACAGAGG
1 -ACACGACCGTGTGG-ACAGAGG
*
93158777 -CACGGCCGTGTG
1 ACACGACCGTGTG
93158789 ATCAGGCCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 22 0.73
22 1 0.03
23 7 0.23
ACGTcount: A:0.22, C:0.29, G:0.36, T:0.13
Consensus pattern (21 bp):
ACACGACCGTGTGGACAGAGG
Found at i:93161259 original size:20 final size:19
Alignment explanation
Indices: 93161221--93161259 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
93161211 TTAAAACTTT
* *
93161221 AATTAATTTTTAGTGGAAA
1 AATTAATTTCTACTGGAAA
93161240 AATTAATTCTCTACTGGAAA
1 AATTAATT-TCTACTGGAAA
93161260 CCAAAACTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (19 bp):
AATTAATTTCTACTGGAAA
Found at i:93162625 original size:11 final size:12
Alignment explanation
Indices: 93162598--93162634 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
93162588 GAAAAGAAAA
93162598 TAAAATCTAATT
1 TAAAATCTAATT
93162610 TAAAATCTAA-T
1 TAAAATCTAATT
93162621 TAAAA-CTAAATT
1 TAAAATCT-AATT
93162633 TA
1 TA
93162635 CTCATAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 2 0.09
11 8 0.35
12 13 0.57
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (12 bp):
TAAAATCTAATT
Found at i:93167845 original size:38 final size:38
Alignment explanation
Indices: 93167803--93167889 Score: 174
Period size: 38 Copynumber: 2.3 Consensus size: 38
93167793 ATAGACATGC
93167803 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
93167841 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
93167879 ATGTTCGGCCA
1 ATGTTCGGCCA
93167890 TAGGTAAGCA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 49 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:93168605 original size:40 final size:40
Alignment explanation
Indices: 93168560--93168665 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
93168550 GTGCGAGTTG
*
93168560 CTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA
1 CTATATCCGGGCTAAGACCCGAAGGCATCTGTGCTAGCGA
* *
93168600 CTATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGA
1 CTATATCCGGGCTAAGACCCGAAGGCATCTGTGCTAGCGA
*
93168640 CCATATCCGGGCTAAGACCCGAAGGC
1 CTATATCCGGGCTAAGACCCGAAGGC
93168666 CTTGTGCAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (40 bp):
CTATATCCGGGCTAAGACCCGAAGGCATCTGTGCTAGCGA
Found at i:93170814 original size:47 final size:47
Alignment explanation
Indices: 93170754--93170968 Score: 147
Period size: 47 Copynumber: 4.6 Consensus size: 47
93170744 CGATAGCCAG
*
93170754 TGTAAGAATGTGTCTGGGACATGGCATCAG-CGTAAAGATGAGTGCTAA
1 TGTAAG-ACGTGTCTGGGACAT-GCATCAGACGTAAAGATGAGTGCTAA
* * * * *
93170802 TGTAAGACGTGTCTAGGACATGCATC-GACCTCAATGATG-GTAGCCAG
1 TGTAAGACGTGTCTGGGACATGCATCAGACGT-AAAGATGAGT-GCTAA
* * **
93170849 TGTAAGACGTGTCTGGGACACGCATCAG-C-T-AAGCTTCGTGC-AA
1 TGTAAGACGTGTCTGGGACATGCATCAGACGTAAAGATGAGTGCTAA
* * * * * * *
93170892 GTGTAAGACATGTCTGGAACATGCATCAGCACGTATACACGAGAGCTAG
1 -TGTAAGACGTGTCTGGGACATGCATCAG-ACGTAAAGATGAGTGCTAA
*
93170941 TGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGA-CGTGTCTGGGACAT-GCATC
93170969 GGCAACTTAA
Statistics
Matches: 130, Mismatches: 24, Indels: 24
0.73 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 30 0.23
45 3 0.02
46 11 0.08
47 48 0.37
48 18 0.14
49 14 0.11
50 5 0.04
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
TGTAAGACGTGTCTGGGACATGCATCAGACGTAAAGATGAGTGCTAA
Found at i:93170821 original size:94 final size:92
Alignment explanation
Indices: 93170703--93170968 Score: 238
Period size: 94 Copynumber: 2.9 Consensus size: 92
93170693 TGAGACAAGG
* * * * *
93170703 GCTAGTGTAAGACGTGTCCGGGACATGTATCAGCCAC-ATTACGATAGCCAGTGTAAGAATGTGT
1 GCTAATGTAAGACGTGT-CTGGACATGCATCAGCCACAATCACGATAGCCAGTGTAAGAACGTGT
93170767 CTGGGACATGGCATCAGCGTAAAGATGAGT
65 CTGGGACATGGCATCAGC-T-AAGATGAGT
* * * *
93170797 GCTAATGTAAGACGTGTCTAGGACATGCATC-GACCTCAATGATGGTAGCCAGTGTAAG-ACGTG
1 GCTAATGTAAGACGTGTCT-GGACATGCATCAG-CCACAATCACGATAGCCAGTGTAAGAACGTG
* * **
93170860 TCTGGGACA-CGCATCAGCTAAGCTTCGT
64 TCTGGGACATGGCATCAGCTAAGATGAGT
* * * * * *
93170888 GC-AAGTGTAAGACATGTCTGGAACATGCATCAG-CACGTATACACGAGAGCTAGTGTAAGACCA
1 GCTAA-TGTAAGACGTGTCTGG-ACATGCATCAGCCAC-AAT-CACGATAGCCAGTGTAAGAACG
93170951 TGTCTGGGACATGGCATC
62 TGTCTGGGACATGGCATC
93170969 GGCAACTTAA
Statistics
Matches: 139, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
90 6 0.04
91 32 0.23
92 15 0.11
93 22 0.16
94 47 0.34
95 17 0.12
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (92 bp):
GCTAATGTAAGACGTGTCTGGACATGCATCAGCCACAATCACGATAGCCAGTGTAAGAACGTGTC
TGGGACATGGCATCAGCTAAGATGAGT
Found at i:93170915 original size:91 final size:95
Alignment explanation
Indices: 93170747--93170918 Score: 230
Period size: 91 Copynumber: 1.9 Consensus size: 95
93170737 CACATTACGA
* * *
93170747 TAGCCAGTGTAAGAATGTGTCTGGGACATGGCATCAGCGTAAAGATGAGTGCTAATGTAAGACGT
1 TAGCCAGTGTAAGAACGTGTCTGGGACATCGCATCAGCGTAAAGATGAGTGCTAATGTAAGACAT
93170812 GTCTAGGACATGCATCGACCTCAATGATGG
66 GTCTAGGACATGCATCGACCTCAATGATGG
* **
93170842 TAGCCAGTGTAAG-ACGTGTCTGGGACA-CGCATCAGC-T-AAGCTTCGTGC-AAGTGTAAGACA
1 TAGCCAGTGTAAGAACGTGTCTGGGACATCGCATCAGCGTAAAGATGAGTGCTAA-TGTAAGACA
93170902 TGTCT-GGAACATGCATC
65 TGTCTAGG-ACATGCATC
93170919 AGCACGTATA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
90 4 0.06
91 30 0.43
92 1 0.01
93 8 0.12
94 13 0.19
95 13 0.19
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
TAGCCAGTGTAAGAACGTGTCTGGGACATCGCATCAGCGTAAAGATGAGTGCTAATGTAAGACAT
GTCTAGGACATGCATCGACCTCAATGATGG
Found at i:93174626 original size:47 final size:46
Alignment explanation
Indices: 93174567--93174930 Score: 281
Period size: 47 Copynumber: 7.8 Consensus size: 46
93174557 GTGAGCTAGC
*
93174567 GTAAG-CCATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGG--ACATTATGAGAGTCAGT
* *
93174613 GTAACACCATGTCTGGGACATGGCATCGG-CATTGA-GACGAGAGCTAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACATT-ATGA-GAG-TC-AGT
* * * *
93174661 GTAAGA-CATGTCTAGGACAT-ACATCGG-C-TAAATGATGTGTCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACAT-TATGA-GAGTCAGT
** * *
93174705 AAAAGACCATGTCTGGGACATGGCATTGGCACAGATACGTGAGAGTCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGG-ACA-TTA--TGAGAGTCAGT
*
93174755 GTAAGACCATGTCTGAGACATGGCATC-GAC-TTAACATGAGAGTCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACATT---ATGAGAGTCAGT
*
93174802 ATAAGACCATGTCTGGGACATGGCATC-GAC-TTAACGTGAGAGTCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACATT-A--TGAGAGTCAGT
* * * *
93174849 GTAAGACCCTGTCTAGGACATGGCGTC-GAC-TTAGCGTGAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGACATTA---TGAGAGTCAGT
93174896 GTAAGACCATGTCTGGGACATGGCATCGG-CATTAT
1 GTAAGACCATGTCTGGGACATGGCATCGGACATTAT
93174931 ACCCTATGTG
Statistics
Matches: 261, Mismatches: 33, Indels: 49
0.76 0.10 0.14
Matches are distributed among these distances:
44 7 0.03
45 24 0.09
46 26 0.10
47 146 0.56
48 22 0.08
49 3 0.01
50 30 0.11
51 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GTAAGACCATGTCTGGGACATGGCATCGGACATTATGAGAGTCAGT
Found at i:93174749 original size:94 final size:96
Alignment explanation
Indices: 93174618--93174926 Score: 341
Period size: 94 Copynumber: 3.3 Consensus size: 96
93174608 CCAGTGTAAC
* *
93174618 ACCATGTCTGGGACATGGCATCGGCATTGAGAC--GAGAG-CTAGTGTAAGA-CATGTCTAGGAC
1 ACCATGTCTGGGACATGGCATTGGCACTGA-ACGTGAGAGTC-AGTGTAAGACCATGTCTAGGAC
* *
93174679 AT-ACATCGGC-TAA-ATGATGTGTCAGTAAAAG
64 ATGACATCGACTTAACATGA-GAGTCAGTAAAAG
*
93174710 ACCATGTCTGGGACATGGCATTGGCACAGATACGTGAGAGTCAGTGTAAGACCATGTCT-GAGAC
1 ACCATGTCTGGGACATGGCATTGGCACTGA-ACGTGAGAGTCAGTGTAAGACCATGTCTAG-GAC
* *
93174774 ATGGCATCGACTTAACATGAGAGTCAGTATAAG
64 ATGACATCGACTTAACATGAGAGTCAGTAAAAG
* * *
93174807 ACCATGTCTGGGACATGGCA-TCG-ACTTAACGTGAGAGTCAGTGTAAGACCCTGTCTAGGACAT
1 ACCATGTCTGGGACATGGCATTGGCACTGAACGTGAGAGTCAGTGTAAGACCATGTCTAGGACAT
* * * * * **
93174870 GGCGTCGACTTAGCGTGAGAGCCAGTGTAAG
66 GACATCGACTTAACATGAGAGTCAGTAAAAG
*
93174901 ACCATGTCTGGGACATGGCATCGGCA
1 ACCATGTCTGGGACATGGCATTGGCA
93174927 TTATACCCTA
Statistics
Matches: 187, Mismatches: 19, Indels: 18
0.83 0.08 0.08
Matches are distributed among these distances:
92 29 0.16
94 93 0.50
95 18 0.10
96 9 0.05
97 34 0.18
98 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (96 bp):
ACCATGTCTGGGACATGGCATTGGCACTGAACGTGAGAGTCAGTGTAAGACCATGTCTAGGACAT
GACATCGACTTAACATGAGAGTCAGTAAAAG
Found at i:93174907 original size:141 final size:141
Alignment explanation
Indices: 93174602--93174929 Score: 362
Period size: 141 Copynumber: 2.3 Consensus size: 141
93174592 GGCCACATTA
* * * * *
93174602 TGAGAGCCAGTGTAACACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAACACGAGAGCTAGTATAAGA
* * * *
93174667 CATGTCTAGGACATACATCGGCTAAATGATGTGTCAGTAAAAGACCATGTCTGGGACATGGCATT
66 CATGTCTAGGACATACATCGACTAAATGATGAGTCAGTAAAAGACCATGTCTAGGACATGGCAGT
*
93174732 GGCACAGATACG
131 CGCACA-ATACG
* * *
93174744 TGAGAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGAC-TTAACATGAGAG-TCAGTATAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAACACGAGAGCT-AGTATAAG
* * * ** *
93174807 ACCATGTCTGGGACATGGCATCGACTTAACGTGA-GAGTCAGTGTAAGACCCTGTCTAGGACATG
65 A-CATGTCTAGGACAT-ACATCGAC-TAA-ATGATGAGTCAGTAAAAGACCATGTCTAGGACATG
*
93174871 GC-GTCG-AC-TTAGCG
126 GCAGTCGCACAATA-CG
*
93174885 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTA
93174930 TACCCTATGT
Statistics
Matches: 156, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
140 3 0.02
141 57 0.37
142 55 0.35
143 8 0.05
144 30 0.19
145 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (141 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTAACACGAGAGCTAGTATAAGA
CATGTCTAGGACATACATCGACTAAATGATGAGTCAGTAAAAGACCATGTCTAGGACATGGCAGT
CGCACAATACG
Found at i:93175945 original size:28 final size:28
Alignment explanation
Indices: 93175901--93175961 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
93175891 CACGGGCTAG
* *
93175901 GACACGGGCGTGTCATGGCCGTATGAGA
1 GACACGGGCGTGCCATGGCCATATGAGA
*
93175929 GACACGGGCGTGCCATGGCCATGTGAGA
1 GACACGGGCGTGCCATGGCCATATGAGA
93175957 GACAC
1 GACAC
93175962 CGGCCATAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.15
Consensus pattern (28 bp):
GACACGGGCGTGCCATGGCCATATGAGA
Found at i:93182563 original size:46 final size:47
Alignment explanation
Indices: 93182433--93182613 Score: 165
Period size: 50 Copynumber: 3.8 Consensus size: 47
93182423 TGGCCACATT
* *
93182433 ACGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAG
1 ACGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCA-TGAA
* *
93182481 ACGAGAGCTAGTGTAAGA-TATGTCTGGGACAT-GCATCGGC-T-AA
1 ACGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCATGAA
* * * * *
93182524 ATGATGTGTTAGTATAAGACCATGTCTGGGACATGGCATCGGCACGGAT
1 ACGA-GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCA-TGAA
* * *
93182573 ACGTGAGAG-TCAGTGTAAAACCATGTTTGGGACATGGCATC
1 AC--GAGAGCT-AGTATAAGACCATGTCTGGGACATGGCATC
93182614 AACTTAATGT
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
44 12 0.11
45 13 0.12
46 16 0.15
47 13 0.12
48 16 0.15
49 3 0.03
50 29 0.27
51 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
ACGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCATGAA
Found at i:93182643 original size:47 final size:49
Alignment explanation
Indices: 93182538--93182648 Score: 145
Period size: 47 Copynumber: 2.3 Consensus size: 49
93182528 TGTGTTAGTA
*
93182538 TAAGACCATGTCTGGGACATGGCATCGGCACGGATACGTGAGAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATC-GAACGGATACGTGAGAGTCAGTG
* * ** *
93182588 TAAAACCATGTTTGGGACATGGCATC-AACTTA-ATGTGAGAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGAACGGATACGTGAGAGTCAGTG
93182635 TAAGACCATGTCTG
1 TAAGACCATGTCTG
93182649 AACCATGTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
47 26 0.49
48 3 0.06
50 24 0.45
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATCGAACGGATACGTGAGAGTCAGTG
Found at i:93182685 original size:58 final size:57
Alignment explanation
Indices: 93182591--93182702 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 57
93182581 GTCAGTGTAA
* ** *
93182591 AACCATGTTTGGGACATGGCATCAACTTAATGTGAGAGTCAGTGTAAGACCATGTCTG
1 AACCATGTCTGGGACATGGCATCAACTTAACATGAGAGCCAGTGTAAGA-CATGTCTG
* * *
93182649 AACCATGTCTGGGACATGGCGTCGACTTAGCATGAGAGCCAGTGTAAGACATGT
1 AACCATGTCTGGGACATGGCATCAACTTAACATGAGAGCCAGTGTAAGACATGT
93182703 TTCGGACATG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 5 0.11
58 42 0.89
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (57 bp):
AACCATGTCTGGGACATGGCATCAACTTAACATGAGAGCCAGTGTAAGACATGTCTG
Found at i:93200445 original size:12 final size:12
Alignment explanation
Indices: 93200428--93200465 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
93200418 CTACCACCTC
93200428 TACATCTACTGT
1 TACATCTACTGT
93200440 TACATCTACT-T
1 TACATCTACTGT
*
93200451 CTACATCTACCGT
1 -TACATCTACTGT
93200464 TA
1 TA
93200466 TGTCAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
11 1 0.04
12 21 0.91
13 1 0.04
ACGTcount: A:0.26, C:0.29, G:0.05, T:0.39
Consensus pattern (12 bp):
TACATCTACTGT
Found at i:93203919 original size:32 final size:32
Alignment explanation
Indices: 93203883--93203943 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
93203873 CCCTTTATCG
*
93203883 GGCTATAAATTCCACTACTGTAAATGAAATCA
1 GGCTATAAATTCCACTAATGTAAATGAAATCA
93203915 GGCTATAAATTCCACTAATGTAAATGAAA
1 GGCTATAAATTCCACTAATGTAAATGAAA
93203944 CTATGTCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (32 bp):
GGCTATAAATTCCACTAATGTAAATGAAATCA
Found at i:93205097 original size:42 final size:41
Alignment explanation
Indices: 93204994--93205129 Score: 132
Period size: 43 Copynumber: 3.2 Consensus size: 41
93204984 AAAATTCATG
*
93204994 GTGGGAAAAGCGCCGCTAAAAGTCATGGCTTTTAGCG-GCATTT
1 GTGGG-AAAGCGCCGCTAAAAGTCCTGGCTTTTAGCGAG--TTT
* **
93205037 GTTGGGGAAGCATCGCTAAAAGTCCTGGCTTTTAGCGAGTTT
1 G-TGGGAAAGCGCCGCTAAAAGTCCTGGCTTTTAGCGAGTTT
* * *
93205079 GTGAGAAAGGCGCCGCTAAAAGT-CAGTGCTTTTAGCAACGTTT
1 GTGGGAAA-GCGCCGCTAAAAGTCCTG-GCTTTTAGCGA-GTTT
93205122 GTGGGAAA
1 GTGGGAAA
93205130 ATAGCTGCTA
Statistics
Matches: 77, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
41 7 0.09
42 26 0.34
43 39 0.51
44 5 0.06
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (41 bp):
GTGGGAAAGCGCCGCTAAAAGTCCTGGCTTTTAGCGAGTTT
Found at i:93205966 original size:23 final size:23
Alignment explanation
Indices: 93205935--93206547 Score: 559
Period size: 23 Copynumber: 26.7 Consensus size: 23
93205925 AAATAAGTAC
* *
93205935 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
93205958 TTAAGCACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
93205981 TTAAACACTTCAATTTGCAGCAT
1 TTAAACACTTCAATTTACAGCAT
* * *
93206004 TCAAACACTTCAATTTGCACCACT
1 TTAAACACTTCAATTTACAGCA-T
*
93206028 TT-AACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* *
93206051 TT-AACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTACAGCAT
* * *
93206073 TTATACACCTCAA-TTACAGTGA-
1 TTAAACACTTCAATTTACAG-CAT
* * * *
93206095 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * **
93206118 CTAAACACTTCAATTTGCAATAT
1 TTAAACACTTCAATTTACAGCAT
*
93206141 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
93206164 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* * *
93206187 TCAAACACTTCAAATTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
*
93206211 TT-AACACTTCAATTTACAGTAT
1 TTAAACACTTCAATTTACAGCAT
*
93206233 TTAAACACTTCAATTTATAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
93206256 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* *
93206280 TT-AACTCTTCAATTTACAGCAC
1 TTAAACACTTCAATTTACAGCAT
* *
93206302 TAAAACTA-TTCAATTTGCAGCACT
1 TTAAAC-ACTTCAATTTACAGCA-T
* * *
93206326 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
93206348 TTAAACACTTCAATTTATAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
93206371 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
93206395 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
93206417 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * **
93206441 TT-AACATTTCAATTAACAATAT
1 TTAAACACTTCAATTTACAGCAT
93206463 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* ** *
93206486 TCAAACACTTCAATTTGTAGTACT
1 TTAAACACTTCAATTTACAGCA-T
*
93206510 TT-AACACTTTAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
93206532 TAAAACACTTCAATTT
1 TTAAACACTTCAATTT
93206548 GTAGCACTTT
Statistics
Matches: 475, Mismatches: 92, Indels: 46
0.77 0.15 0.08
Matches are distributed among these distances:
22 33 0.07
23 428 0.90
24 14 0.03
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.34
Consensus pattern (23 bp):
TTAAACACTTCAATTTACAGCAT
Found at i:93206570 original size:115 final size:115
Alignment explanation
Indices: 93205933--93206574 Score: 697
Period size: 115 Copynumber: 5.6 Consensus size: 115
93205923 CAAAATAAGT
* * * * * * * * *
93205933 ACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAACA-TTTAAACACTTCAATTT
1 ACTTTAACACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTT-AACATTTCAATTA
* ** * * * *
93205997 GCAGCATTCAAACACTTCAATTTGCACCACTT-TAACACTTCAATTTGCAGC
65 ACAATATTTAAACACTTCAATTTACAGCA-TTCAAACACTTCAATTTGCAGC
* * * * * * * ** *
93206048 ACTTTAACA-TCTCAATTAACAACATTTATACACCTCAA-TTACAGTGA-TAAAACATCTCAATG
1 ACTTTAACACT-TCAATTTACAGCATTAAAACACTTCAATTTGCAG-CACTTTAACATTTCAAT-
* ** ** * ** * * *
93206110 T-CCAGCAACTAAACACTTCAATTTGCAATATTTAAGCACTTCAATTTACAGC
63 TAACAATATTTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
* * * *
93206162 A-TTTAAACACTTCAATTTACAGCATTCAAACACTTCAAATTGCAGCACTTTAACACTTCAATTT
1 ACTTT-AACACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAACATTTCAATTA
* *
93206226 ACAGTATTTAAACACTTCAATTTATAGCATTCAAACACTTCAATTTGCAGC
65 ACAATATTTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
* *
93206277 ACTTTAACTCTTCAATTTACAGCACTAAAACTA-TTCAATTTGCAGCACTTTAACATTTCAATTA
1 ACTTTAACACTTCAATTTACAGCATTAAAAC-ACTTCAATTTGCAGCACTTTAACATTTCAATTA
* *
93206341 ACAACATTTAAACACTTCAATTTATAGCATTCAAACACTTCAATTTGCAGC
65 ACAATATTTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
93206392 ACTTTAACACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAACATTTCAATTAA
1 ACTTTAACACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAACATTTCAATTAA
* *
93206457 CAATATTTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGTAGT
66 CAATATTTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
* * *
93206507 ACTTTAACACTTTAATTTACAGCATTAAAACACTTCAATTTGTAGCACTTTAATATTTCAATTAA
1 ACTTTAACACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAACATTTCAATTAA
93206572 CAA
66 CAA
93206575 AACAACATTT
Statistics
Matches: 455, Mismatches: 60, Indels: 24
0.84 0.11 0.04
Matches are distributed among these distances:
113 5 0.01
114 84 0.18
115 362 0.80
116 4 0.01
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (115 bp):
ACTTTAACACTTCAATTTACAGCATTAAAACACTTCAATTTGCAGCACTTTAACATTTCAATTAA
CAATATTTAAACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGC
Found at i:93210295 original size:21 final size:21
Alignment explanation
Indices: 93210256--93210319 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
93210246 AAATATTAAG
* * *
93210256 TTTTTAAGTTTTTATTTTTTA
1 TTTTTAAATTTTAAATTTTTA
93210277 TTTTTAAATTTTAAA-TTTTA
1 TTTTTAAATTTTAAATTTTTA
* *
93210297 TTTTGGAGATTTTATAATTTTTA
1 TTTT-TAAATTTTA-AATTTTTA
93210320 AATTAACATA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 9 0.26
21 19 0.54
22 2 0.06
23 5 0.14
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (21 bp):
TTTTTAAATTTTAAATTTTTA
Found at i:93212683 original size:40 final size:40
Alignment explanation
Indices: 93212605--93212828 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
93212595 ACCCAAGTAT
* *
93212605 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
93212644 TTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
93212684 CTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
93212724 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
93212767 GTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
93212807 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
93212829 CATCCGAATA
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 11 0.07
40 113 0.71
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:93212803 original size:83 final size:80
Alignment explanation
Indices: 93212605--93212828 Score: 290
Period size: 83 Copynumber: 2.8 Consensus size: 80
93212595 ACCCAAGTAT
* * * * *
93212605 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCTTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
93212669 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* * *
93212684 CTTCGGGACTTAGCCCGGATGTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
93212748 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
93212767 GTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
93212829 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 13 0.10
80 47 0.38
83 65 0.52
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Done.